AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0500580


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0500580 MtrunA17_Chr3g0133901 98.502 267 4 0 1 267 1 267 0.0 536
Msa0500580 MtrunA17_Chr3g0092091 50.476 210 96 4 57 266 52 253 6.40e-66 206
Msa0500580 MtrunA17_Chr8g0345631 49.763 211 101 4 51 259 55 262 8.48e-65 203
Msa0500580 MtrunA17_Chr5g0448421 46.809 235 101 9 45 262 47 274 5.46e-60 191
Msa0500580 MtrunA17_Chr5g0448411 45.188 239 110 8 41 262 38 272 4.78e-59 189
Msa0500580 MtrunA17_Chr2g0301081 47.847 209 105 3 57 264 61 266 7.38e-56 180
Msa0500580 MtrunA17_Chr2g0279001 44.724 199 83 6 58 235 57 249 1.03e-40 141
Msa0500580 MtrunA17_Chr6g0462031 36.752 234 113 7 37 262 32 238 1.90e-40 140
Msa0500580 MtrunA17_Chr1g0157481 39.256 242 106 7 49 264 103 329 4.80e-40 141
Msa0500580 MtrunA17_Chr5g0447531 41.667 192 98 4 68 253 66 249 8.59e-37 131
Msa0500580 MtrunA17_Chr4g0051941 40.722 194 101 5 66 253 65 250 4.33e-36 129
Msa0500580 MtrunA17_Chr6g0453141 39.409 203 91 6 66 253 64 249 1.95e-35 127
Msa0500580 MtrunA17_Chr6g0453151 39.409 203 91 6 66 253 131 316 2.56e-35 129
Msa0500580 MtrunA17_Chr6g0453181 38.424 203 93 6 66 253 64 249 9.44e-35 125
Msa0500580 MtrunA17_Chr6g0476641 37.383 214 96 7 68 265 91 282 2.96e-34 125
Msa0500580 MtrunA17_Chr4g0006181 32.959 267 101 5 52 265 106 347 2.96e-34 126
Msa0500580 MtrunA17_Chr6g0453161 39.409 203 91 6 66 253 66 251 2.51e-33 127
Msa0500580 MtrunA17_Chr6g0453161 38.424 203 93 6 66 253 331 516 1.01e-32 125
Msa0500580 MtrunA17_Chr2g0318521 37.624 202 94 5 68 253 63 248 2.04e-31 117
Msa0500580 MtrunA17_Chr3g0113311 30.303 231 95 4 60 243 59 270 2.45e-22 93.2
Msa0500580 MtrunA17_Chr6g0464511 33.511 188 89 5 66 253 45 196 6.41e-22 90.9
Msa0500580 MtrunA17_Chr2g0296081 56.000 75 28 2 189 263 33 102 2.56e-18 78.2
Msa0500580 MtrunA17_Chr6g0453171 50.000 70 34 1 188 257 18 86 2.33e-17 75.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0500580 AT1G45474.2 77.826 230 44 2 39 267 33 256 6.68e-130 369
Msa0500580 AT1G45474.1 77.826 230 44 2 39 267 33 256 6.68e-130 369
Msa0500580 AT3G47470.1 44.000 250 124 5 21 262 9 250 3.77e-63 199
Msa0500580 AT3G61470.1 48.131 214 107 3 50 262 44 254 4.39e-63 199
Msa0500580 AT1G61520.3 45.339 236 104 9 44 262 43 270 1.49e-57 185
Msa0500580 AT1G61520.1 45.339 236 104 9 44 262 43 270 1.49e-57 185
Msa0500580 AT1G19150.1 44.976 209 111 3 57 264 64 269 3.45e-55 179
Msa0500580 AT1G61520.2 46.602 206 89 8 74 262 14 215 1.24e-51 168
Msa0500580 AT1G15820.1 44.976 209 80 8 52 235 48 246 1.29e-41 144
Msa0500580 AT3G54890.1 39.806 206 96 6 61 258 48 233 1.75e-38 135
Msa0500580 AT1G76570.1 37.607 234 106 7 56 264 109 327 1.69e-37 135
Msa0500580 AT2G05100.1 35.686 255 134 7 21 253 3 249 1.09e-36 131
Msa0500580 AT2G05070.1 35.686 255 134 7 21 253 3 249 1.74e-36 130
Msa0500580 AT2G34430.1 41.237 194 101 4 66 253 64 250 2.50e-36 130
Msa0500580 AT3G27690.1 35.985 264 143 7 2 253 1 250 2.67e-36 130
Msa0500580 AT2G34420.1 41.237 194 101 4 66 253 63 249 3.02e-36 130
Msa0500580 AT3G27690.2 35.985 264 143 7 2 253 33 282 4.94e-36 130
Msa0500580 AT4G10340.1 37.129 202 117 4 68 267 82 275 1.43e-35 129
Msa0500580 AT1G29930.1 41.237 194 101 4 66 253 65 251 2.38e-35 127
Msa0500580 AT1G29920.1 41.237 194 101 4 66 253 65 251 2.53e-35 127
Msa0500580 AT1G29910.1 41.237 194 101 4 66 253 65 251 2.53e-35 127
Msa0500580 AT3G08940.2 32.963 270 103 6 49 265 43 287 1.00e-34 126
Msa0500580 AT5G01530.1 33.206 262 97 5 57 265 54 290 2.07e-33 123
Msa0500580 AT5G54270.1 37.255 204 92 5 68 253 64 249 2.99e-32 119
Msa0500580 AT2G05100.2 33.086 269 149 8 21 266 3 263 5.06e-30 115
Msa0500580 AT3G54890.2 37.811 201 73 6 61 258 48 199 1.75e-29 110
Msa0500580 AT3G54890.4 37.870 169 78 5 61 222 48 196 1.74e-25 100
Msa0500580 AT2G40100.1 30.041 243 91 7 57 246 55 271 6.04e-20 87.0
Msa0500580 AT3G54890.3 61.667 60 23 0 61 120 48 107 2.33e-18 80.5
Msa0500580 AT5G28450.1 43.434 99 53 2 162 259 71 167 6.40e-16 73.9

Find 93 sgRNAs with CRISPR-Local

Find 292 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAGTCTGCCTGGAGATTT+TGG 0.083031 3_4:+41088055 Msa0500580:intron
GCTAAAGAGGGTTCCTTCTT+TGG 0.210992 3_4:+41088775 Msa0500580:CDS
AACTGTAAATGAAAATTTAA+AGG 0.224011 3_4:-41089389 None:intergenic
ACATACCACTTTAAGCTTTC+AGG 0.257681 3_4:-41088106 None:intergenic
CTTCGCGTCGCAGGAGTTAA+TGG 0.271659 3_4:+41088512 Msa0500580:CDS
AAAATTCTTTCTTTAAGCTT+TGG 0.289874 3_4:+41089330 Msa0500580:three_prime_UTR
CTTTGCAATGCTTGGAGTCT+TGG 0.296257 3_4:+41088153 Msa0500580:CDS
AAATTCTTTCTTTAAGCTTT+GGG 0.310231 3_4:+41089331 Msa0500580:three_prime_UTR
CGTTGTTCAACTACTCTTGA+TGG 0.331931 3_4:+41088598 Msa0500580:CDS
TGGCTCAGGCCTGCTGCTGC+AGG 0.332089 3_4:+41087834 Msa0500580:CDS
AAGTAAATGTATTAGTCTTA+TGG 0.334702 3_4:+41089285 Msa0500580:three_prime_UTR
GAGTTAATGGCATACCAATT+TGG 0.351396 3_4:+41088525 Msa0500580:CDS
TTAAAGAATGTTGCTGGAAA+TGG 0.353609 3_4:-41087767 None:intergenic
AGGCCTGCTGCTGCAGGAAC+GGG 0.357983 3_4:+41087840 Msa0500580:CDS
CATTCTCGCTTTGCAATGCT+TGG 0.365225 3_4:+41088145 Msa0500580:CDS
CTAATTATCCGCTCCTATCC+CGG 0.370042 3_4:-41087706 None:intergenic
CCCTCTTTAGCTTGAGATCC+AGG 0.372198 3_4:-41088763 None:intergenic
GCACCAGCTTCAAACCAAAT+TGG 0.375590 3_4:-41088539 None:intergenic
ACTGTAAATGAAAATTTAAA+GGG 0.378215 3_4:-41089388 None:intergenic
TTTGCAATGCTTGGAGTCTT+GGG 0.379571 3_4:+41088154 Msa0500580:CDS
CAGGCCTGCTGCTGCAGGAA+CGG 0.383245 3_4:+41087839 Msa0500580:CDS
GGGTTCCTTCTTTGGATTGG+AGG 0.390165 3_4:+41088783 Msa0500580:CDS
ACAGGTATGCTGAAACAAAA+AGG 0.395693 3_4:+41088722 Msa0500580:intron
GGATTGGAGGCTTCACTTGG+AGG 0.408465 3_4:+41088796 Msa0500580:CDS
CAGTGGTGTCCTGCTGTTGA+AGG 0.408562 3_4:-41087813 None:intergenic
TTAATCAACAGCAATGTCAT+TGG 0.423067 3_4:+41087786 Msa0500580:CDS
AGAGGGTTCCTTCTTTGGAT+TGG 0.425551 3_4:+41088780 Msa0500580:CDS
TTTGGATTGGAGGCTTCACT+TGG 0.427397 3_4:+41088793 Msa0500580:CDS
CAGCAGCAGGCCTGAGCCAG+TGG 0.431308 3_4:-41087830 None:intergenic
TGTTGATTAAAGAATGTTGC+TGG 0.432156 3_4:-41087773 None:intergenic
CTTGCAATGGTAGCAATACT+TGG 0.449516 3_4:+41089138 Msa0500580:CDS
TCACTTGGAGGCTTAGAGCC+AGG 0.454641 3_4:+41088808 Msa0500580:CDS
GGTCCTCTGCTAAATCCTCT+TGG 0.466721 3_4:+41088967 Msa0500580:CDS
TGTATTAGTCTTATGGAACT+TGG 0.467889 3_4:+41089292 Msa0500580:three_prime_UTR
ACAGCGACCCACATGGCTCC+CGG 0.470053 3_4:+41087902 Msa0500580:CDS
CAGCAGGACACCACTGGCTC+AGG 0.472502 3_4:+41087820 Msa0500580:CDS
GTTGTTCAACTACTCTTGAT+GGG 0.474147 3_4:+41088599 Msa0500580:CDS
ACATTAAAAGTGCTCGTGAA+TGG 0.476630 3_4:+41089001 Msa0500580:CDS
ACGTTCCATCAAGATAGGTC+GGG 0.483613 3_4:-41087935 None:intergenic
ACTCCCGTTCCTGCAGCAGC+AGG 0.483851 3_4:-41087843 None:intergenic
TGCTCCACAAGGTTATCAAT+TGG 0.488850 3_4:-41089195 None:intergenic
AACAATTGATTTGTAGTCCC+GGG 0.493837 3_4:+41087688 Msa0500580:five_prime_UTR
GGGTTCGACCCACTTGGACT+TGG 0.499119 3_4:+41088076 Msa0500580:CDS
TCCTGGATCTCAAGCTAAAG+AGG 0.502469 3_4:+41088762 Msa0500580:CDS
TTGATTTGTAGTCCCGGGAT+AGG 0.505378 3_4:+41087693 Msa0500580:five_prime_UTR
GTGGTATGTGCAAGCAGAGT+TGG 0.513095 3_4:+41088120 Msa0500580:CDS
ATCAAGTCCCGGGAGCCATG+TGG 0.514514 3_4:-41087910 None:intergenic
TTTCAACAAATAGGTACCCT+GGG 0.517399 3_4:+41088944 Msa0500580:intron
AAACAATTGATTTGTAGTCC+CGG 0.518317 3_4:+41087687 Msa0500580:five_prime_UTR
ATGCAGCTACTTCGCGTCGC+AGG 0.521060 3_4:+41088503 Msa0500580:intron
CACTTGGAGGCTTAGAGCCA+GGG 0.521376 3_4:+41088809 Msa0500580:CDS
TGAACAAAGTATCATGATGT+TGG 0.523991 3_4:-41089454 None:intergenic
CAGCGACCCACATGGCTCCC+GGG 0.535164 3_4:+41087903 Msa0500580:CDS
TCAAGTCCCGGGAGCCATGT+GGG 0.535885 3_4:-41087909 None:intergenic
ACTAAGAACTAGAACTTGCA+AGG 0.536025 3_4:-41089254 None:intergenic
TAATTATCCGCTCCTATCCC+GGG 0.541171 3_4:-41087705 None:intergenic
TACGTTCCATCAAGATAGGT+CGG 0.542041 3_4:-41087936 None:intergenic
ATACCAATTTGGTTTGAAGC+TGG 0.542713 3_4:+41088536 Msa0500580:CDS
GGGTCGAACCCAAAATCTCC+AGG 0.547605 3_4:-41088064 None:intergenic
CGTTCCATCAAGATAGGTCG+GGG 0.549545 3_4:-41087934 None:intergenic
GGCTTACGTTCCATCAAGAT+AGG 0.552815 3_4:-41087940 None:intergenic
AAGCTTAAAGAGATCAAGAA+TGG 0.555296 3_4:+41089024 Msa0500580:CDS
CTTCAACAGCAGGACACCAC+TGG 0.557036 3_4:+41087814 Msa0500580:CDS
TGAAGCCTCCAATCCAAAGA+AGG 0.557622 3_4:-41088788 None:intergenic
GTTTCAACAAATAGGTACCC+TGG 0.560016 3_4:+41088943 Msa0500580:intron
TGGAGCATCTCTCAAATCCA+TGG 0.566001 3_4:+41089211 Msa0500580:CDS
TGTTACAGGGCGACTTGCAA+TGG 0.566623 3_4:+41089125 Msa0500580:intron
TTCTTTCTTTAAGCTTTGGG+AGG 0.576059 3_4:+41089334 Msa0500580:three_prime_UTR
ATTGGTAAACCTTCAACAGC+AGG 0.584446 3_4:+41087804 Msa0500580:CDS
CAGCACAACAGCGACCCACA+TGG 0.585644 3_4:+41087895 Msa0500580:CDS
CCTGGATCTCAAGCTAAAGA+GGG 0.589518 3_4:+41088763 Msa0500580:CDS
CTGTAAATGAAAATTTAAAG+GGG 0.599752 3_4:-41089387 None:intergenic
CGACCCACTTGGACTTGGAG+AGG 0.600286 3_4:+41088081 Msa0500580:CDS
CAAGCTTCAGTGACTCATGT+TGG 0.608285 3_4:+41089171 Msa0500580:CDS
AAATACGAGTTTGCCAACAC+AGG 0.611621 3_4:+41088566 Msa0500580:CDS
AGGATCCTGAAAGCTTAAAG+TGG 0.613738 3_4:+41088101 Msa0500580:CDS
TTGTTCAACTACTCTTGATG+GGG 0.618405 3_4:+41088600 Msa0500580:CDS
AATACGAGTTTGCCAACACA+GGG 0.621022 3_4:+41088567 Msa0500580:CDS
AACGACGAGTGTCCCTGTGT+TGG 0.634037 3_4:-41088579 None:intergenic
CTAAGAACTAGAACTTGCAA+GGG 0.646168 3_4:-41089253 None:intergenic
GCACAAATTTGTTTATAACG+TGG 0.647469 3_4:-41087870 None:intergenic
ATGTCTTTAGCTAGGCCAAG+AGG 0.649507 3_4:-41088982 None:intergenic
GGATCCTCTCCAAGTCCAAG+TGG 0.657850 3_4:-41088085 None:intergenic
TTGTAGTCCCGGGATAGGAG+CGG 0.657877 3_4:+41087698 Msa0500580:five_prime_UTR
AGCGGATAATTAGAGAACAA+TGG 0.668449 3_4:+41087716 Msa0500580:exon
GATTTGAGAGATGCTCCACA+AGG 0.672076 3_4:-41089206 None:intergenic
TGGACCAATTGATAACCTTG+TGG 0.673898 3_4:+41089191 Msa0500580:CDS
GATCCTCTCCAAGTCCAAGT+GGG 0.674722 3_4:-41088084 None:intergenic
TCATGATACTTTGTTCACTG+TGG 0.678659 3_4:+41089460 Msa0500580:three_prime_UTR
AGGCCAAGAGGATTTAGCAG+AGG 0.679125 3_4:-41088970 None:intergenic
TTCAACAAATAGGTACCCTG+GGG 0.698699 3_4:+41088945 Msa0500580:intron
GTTCCATCAAGATAGGTCGG+GGG 0.742215 3_4:-41087933 None:intergenic
TCAACAAATAGGTACCCTGG+GGG 0.781200 3_4:+41088946 Msa0500580:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACTTTGATTATATATATG+CGG - chr3_4:41088290-41088309 None:intergenic 15.0%
!!! ATAATCAAAGTTTTGAATAA+AGG + chr3_4:41088297-41088316 Msa0500580:intron 15.0%
!!! TATGTTTTCTATATCATTAT+AGG + chr3_4:41088672-41088691 Msa0500580:intron 15.0%
!!! AAAGAAAGAATTTTGTTTTA+TGG - chr3_4:41089324-41089343 None:intergenic 15.0%
!! ACTGTAAATGAAAATTTAAA+GGG - chr3_4:41089391-41089410 None:intergenic 15.0%
!! AACTGTAAATGAAAATTTAA+AGG - chr3_4:41089392-41089411 None:intergenic 15.0%
!! AAACTTTGATTATATATATG+CGG - chr3_4:41088290-41088309 None:intergenic 15.0%
!!! ATAATCAAAGTTTTGAATAA+AGG + chr3_4:41088297-41088316 Msa0500580:intron 15.0%
!!! TATGTTTTCTATATCATTAT+AGG + chr3_4:41088672-41088691 Msa0500580:intron 15.0%
!!! AAAGAAAGAATTTTGTTTTA+TGG - chr3_4:41089324-41089343 None:intergenic 15.0%
!! ACTGTAAATGAAAATTTAAA+GGG - chr3_4:41089391-41089410 None:intergenic 15.0%
!! AACTGTAAATGAAAATTTAA+AGG - chr3_4:41089392-41089411 None:intergenic 15.0%
!!! AACATAATGGTTTTATATTG+AGG + chr3_4:41088348-41088367 Msa0500580:intron 20.0%
!!! GTATACATGATTTTAAATAG+CGG - chr3_4:41088449-41088468 None:intergenic 20.0%
!!! ATTTAAAATCATGTATACGA+TGG + chr3_4:41088451-41088470 Msa0500580:intron 20.0%
!!! ATAATCTTGTTTCAACAAAT+AGG + chr3_4:41088935-41088954 Msa0500580:intron 20.0%
!!! AAGTAAATGTATTAGTCTTA+TGG + chr3_4:41089285-41089304 Msa0500580:three_prime_UTR 20.0%
!! AAAATTCTTTCTTTAAGCTT+TGG + chr3_4:41089330-41089349 Msa0500580:three_prime_UTR 20.0%
!! AAATTCTTTCTTTAAGCTTT+GGG + chr3_4:41089331-41089350 Msa0500580:three_prime_UTR 20.0%
!! CTGTAAATGAAAATTTAAAG+GGG - chr3_4:41089390-41089409 None:intergenic 20.0%
!!! AACATAATGGTTTTATATTG+AGG + chr3_4:41088348-41088367 Msa0500580:intron 20.0%
!!! GTATACATGATTTTAAATAG+CGG - chr3_4:41088449-41088468 None:intergenic 20.0%
!!! ATTTAAAATCATGTATACGA+TGG + chr3_4:41088451-41088470 Msa0500580:intron 20.0%
!!! ATAATCTTGTTTCAACAAAT+AGG + chr3_4:41088935-41088954 Msa0500580:intron 20.0%
!!! AAGTAAATGTATTAGTCTTA+TGG + chr3_4:41089285-41089304 Msa0500580:three_prime_UTR 20.0%
!! AAAATTCTTTCTTTAAGCTT+TGG + chr3_4:41089330-41089349 Msa0500580:three_prime_UTR 20.0%
!! AAATTCTTTCTTTAAGCTTT+GGG + chr3_4:41089331-41089350 Msa0500580:three_prime_UTR 20.0%
!! CTGTAAATGAAAATTTAAAG+GGG - chr3_4:41089390-41089409 None:intergenic 20.0%
!!! TGGCATTTTAAGATGAATTT+AGG - chr3_4:41087990-41088009 None:intergenic 25.0%
!! TTCAAGTTATAGTAACGTTA+AGG + chr3_4:41088024-41088043 Msa0500580:intron 25.0%
! TCAAGTTATAGTAACGTTAA+GGG + chr3_4:41088025-41088044 Msa0500580:intron 25.0%
! CTCAATATAAAAAACGTTAC+TGG - chr3_4:41088240-41088259 None:intergenic 25.0%
!!! TAATGGTTTTATATTGAGGT+TGG + chr3_4:41088352-41088371 Msa0500580:intron 25.0%
!! CATAGATTGATAACAAGTTT+AGG - chr3_4:41088486-41088505 None:intergenic 25.0%
! ACGAAGAAAAAAGAAAAACA+CGG - chr3_4:41088886-41088905 None:intergenic 25.0%
! TTGCAAATATTCTTGTTACA+GGG + chr3_4:41089112-41089131 Msa0500580:intron 25.0%
!!! TGAATAATAGTTTTATGCCA+TGG - chr3_4:41089231-41089250 None:intergenic 25.0%
!! TTAAAGGGGAAAACATTTTA+GGG - chr3_4:41089376-41089395 None:intergenic 25.0%
!! TTTAAAGGGGAAAACATTTT+AGG - chr3_4:41089377-41089396 None:intergenic 25.0%
!!! TGGCATTTTAAGATGAATTT+AGG - chr3_4:41087990-41088009 None:intergenic 25.0%
!! TTCAAGTTATAGTAACGTTA+AGG + chr3_4:41088024-41088043 Msa0500580:intron 25.0%
! TCAAGTTATAGTAACGTTAA+GGG + chr3_4:41088025-41088044 Msa0500580:intron 25.0%
! CTCAATATAAAAAACGTTAC+TGG - chr3_4:41088240-41088259 None:intergenic 25.0%
!!! TAATGGTTTTATATTGAGGT+TGG + chr3_4:41088352-41088371 Msa0500580:intron 25.0%
!! CATAGATTGATAACAAGTTT+AGG - chr3_4:41088486-41088505 None:intergenic 25.0%
! ACGAAGAAAAAAGAAAAACA+CGG - chr3_4:41088886-41088905 None:intergenic 25.0%
! TTGCAAATATTCTTGTTACA+GGG + chr3_4:41089112-41089131 Msa0500580:intron 25.0%
!!! TGAATAATAGTTTTATGCCA+TGG - chr3_4:41089231-41089250 None:intergenic 25.0%
!! TTAAAGGGGAAAACATTTTA+GGG - chr3_4:41089376-41089395 None:intergenic 25.0%
!! TTTAAAGGGGAAAACATTTT+AGG - chr3_4:41089377-41089396 None:intergenic 25.0%
!! AAACAATTGATTTGTAGTCC+CGG + chr3_4:41087687-41087706 Msa0500580:five_prime_UTR 30.0%
TTAAAGAATGTTGCTGGAAA+TGG - chr3_4:41087770-41087789 None:intergenic 30.0%
! TGTTGATTAAAGAATGTTGC+TGG - chr3_4:41087776-41087795 None:intergenic 30.0%
TTAATCAACAGCAATGTCAT+TGG + chr3_4:41087786-41087805 Msa0500580:CDS 30.0%
! GCACAAATTTGTTTATAACG+TGG - chr3_4:41087873-41087892 None:intergenic 30.0%
TGATCTAAACTGCAACATAA+TGG + chr3_4:41088335-41088354 Msa0500580:intron 30.0%
! GTTTTATATTGAGGTTGGAT+TGG + chr3_4:41088357-41088376 Msa0500580:intron 30.0%
TTATTAACTTTCACTTGCAC+AGG + chr3_4:41088704-41088723 Msa0500580:intron 30.0%
! CACTTTTAATGTCTTTAGCT+AGG - chr3_4:41088993-41089012 None:intergenic 30.0%
AAGCTTAAAGAGATCAAGAA+TGG + chr3_4:41089024-41089043 Msa0500580:CDS 30.0%
GTTGCAAATATTCTTGTTAC+AGG + chr3_4:41089111-41089130 Msa0500580:intron 30.0%
!! TGTATTAGTCTTATGGAACT+TGG + chr3_4:41089292-41089311 Msa0500580:three_prime_UTR 30.0%
! TGAACAAAGTATCATGATGT+TGG - chr3_4:41089457-41089476 None:intergenic 30.0%
!! AAACAATTGATTTGTAGTCC+CGG + chr3_4:41087687-41087706 Msa0500580:five_prime_UTR 30.0%
TTAAAGAATGTTGCTGGAAA+TGG - chr3_4:41087770-41087789 None:intergenic 30.0%
! TGTTGATTAAAGAATGTTGC+TGG - chr3_4:41087776-41087795 None:intergenic 30.0%
TTAATCAACAGCAATGTCAT+TGG + chr3_4:41087786-41087805 Msa0500580:CDS 30.0%
! GCACAAATTTGTTTATAACG+TGG - chr3_4:41087873-41087892 None:intergenic 30.0%
TGATCTAAACTGCAACATAA+TGG + chr3_4:41088335-41088354 Msa0500580:intron 30.0%
! GTTTTATATTGAGGTTGGAT+TGG + chr3_4:41088357-41088376 Msa0500580:intron 30.0%
TTATTAACTTTCACTTGCAC+AGG + chr3_4:41088704-41088723 Msa0500580:intron 30.0%
! CACTTTTAATGTCTTTAGCT+AGG - chr3_4:41088993-41089012 None:intergenic 30.0%
AAGCTTAAAGAGATCAAGAA+TGG + chr3_4:41089024-41089043 Msa0500580:CDS 30.0%
GTTGCAAATATTCTTGTTAC+AGG + chr3_4:41089111-41089130 Msa0500580:intron 30.0%
!! TGTATTAGTCTTATGGAACT+TGG + chr3_4:41089292-41089311 Msa0500580:three_prime_UTR 30.0%
! TGAACAAAGTATCATGATGT+TGG - chr3_4:41089457-41089476 None:intergenic 30.0%
!! AACAATTGATTTGTAGTCCC+GGG + chr3_4:41087688-41087707 Msa0500580:five_prime_UTR 35.0%
AGCGGATAATTAGAGAACAA+TGG + chr3_4:41087716-41087735 Msa0500580:exon 35.0%
ACATACCACTTTAAGCTTTC+AGG - chr3_4:41088109-41088128 None:intergenic 35.0%
GAGTTAATGGCATACCAATT+TGG + chr3_4:41088525-41088544 Msa0500580:CDS 35.0%
!! ATACCAATTTGGTTTGAAGC+TGG + chr3_4:41088536-41088555 Msa0500580:CDS 35.0%
GTTGTTCAACTACTCTTGAT+GGG + chr3_4:41088599-41088618 Msa0500580:CDS 35.0%
TTGTTCAACTACTCTTGATG+GGG + chr3_4:41088600-41088619 Msa0500580:CDS 35.0%
ACAGGTATGCTGAAACAAAA+AGG + chr3_4:41088722-41088741 Msa0500580:intron 35.0%
! TGCTGAAACAAAAAGGTACA+TGG + chr3_4:41088729-41088748 Msa0500580:CDS 35.0%
! TACATGGATTTTGTTAGTCC+TGG + chr3_4:41088745-41088764 Msa0500580:CDS 35.0%
TCACAATTGTAAGCTAGTTG+AGG + chr3_4:41088909-41088928 Msa0500580:intron 35.0%
TTTCAACAAATAGGTACCCT+GGG + chr3_4:41088944-41088963 Msa0500580:intron 35.0%
!! ACATTAAAAGTGCTCGTGAA+TGG + chr3_4:41089001-41089020 Msa0500580:CDS 35.0%
TGCAACTATGAAAACAAGCT+TGG - chr3_4:41089097-41089116 None:intergenic 35.0%
CTAAGAACTAGAACTTGCAA+GGG - chr3_4:41089256-41089275 None:intergenic 35.0%
ACTAAGAACTAGAACTTGCA+AGG - chr3_4:41089257-41089276 None:intergenic 35.0%
!! TTCTTTCTTTAAGCTTTGGG+AGG + chr3_4:41089334-41089353 Msa0500580:three_prime_UTR 35.0%
TCATGATACTTTGTTCACTG+TGG + chr3_4:41089460-41089479 Msa0500580:three_prime_UTR 35.0%
!! AACAATTGATTTGTAGTCCC+GGG + chr3_4:41087688-41087707 Msa0500580:five_prime_UTR 35.0%
AGCGGATAATTAGAGAACAA+TGG + chr3_4:41087716-41087735 Msa0500580:exon 35.0%
ACATACCACTTTAAGCTTTC+AGG - chr3_4:41088109-41088128 None:intergenic 35.0%
GAGTTAATGGCATACCAATT+TGG + chr3_4:41088525-41088544 Msa0500580:CDS 35.0%
!! ATACCAATTTGGTTTGAAGC+TGG + chr3_4:41088536-41088555 Msa0500580:CDS 35.0%
GTTGTTCAACTACTCTTGAT+GGG + chr3_4:41088599-41088618 Msa0500580:CDS 35.0%
TTGTTCAACTACTCTTGATG+GGG + chr3_4:41088600-41088619 Msa0500580:CDS 35.0%
ACAGGTATGCTGAAACAAAA+AGG + chr3_4:41088722-41088741 Msa0500580:intron 35.0%
! TGCTGAAACAAAAAGGTACA+TGG + chr3_4:41088729-41088748 Msa0500580:CDS 35.0%
! TACATGGATTTTGTTAGTCC+TGG + chr3_4:41088745-41088764 Msa0500580:CDS 35.0%
TCACAATTGTAAGCTAGTTG+AGG + chr3_4:41088909-41088928 Msa0500580:intron 35.0%
TTTCAACAAATAGGTACCCT+GGG + chr3_4:41088944-41088963 Msa0500580:intron 35.0%
!! ACATTAAAAGTGCTCGTGAA+TGG + chr3_4:41089001-41089020 Msa0500580:CDS 35.0%
TGCAACTATGAAAACAAGCT+TGG - chr3_4:41089097-41089116 None:intergenic 35.0%
CTAAGAACTAGAACTTGCAA+GGG - chr3_4:41089256-41089275 None:intergenic 35.0%
ACTAAGAACTAGAACTTGCA+AGG - chr3_4:41089257-41089276 None:intergenic 35.0%
!! TTCTTTCTTTAAGCTTTGGG+AGG + chr3_4:41089334-41089353 Msa0500580:three_prime_UTR 35.0%
TCATGATACTTTGTTCACTG+TGG + chr3_4:41089460-41089479 Msa0500580:three_prime_UTR 35.0%
ATTGGTAAACCTTCAACAGC+AGG + chr3_4:41087804-41087823 Msa0500580:CDS 40.0%
TACGTTCCATCAAGATAGGT+CGG - chr3_4:41087939-41087958 None:intergenic 40.0%
TTAGGAGTCAAAATGCAGAG+AGG - chr3_4:41087972-41087991 None:intergenic 40.0%
CTTGAAAAGAGAACTAGCAC+TGG - chr3_4:41088010-41088029 None:intergenic 40.0%
AGGATCCTGAAAGCTTAAAG+TGG + chr3_4:41088101-41088120 Msa0500580:CDS 40.0%
TTTGCAATGCTTGGAGTCTT+GGG + chr3_4:41088154-41088173 Msa0500580:CDS 40.0%
! TTAGATCATCGTAGCTTTGC+AGG - chr3_4:41088323-41088342 None:intergenic 40.0%
TAGAGAATCACAGCCAAACA+TGG - chr3_4:41088383-41088402 None:intergenic 40.0%
TTGGCTGTGATTCTCTATCA+AGG + chr3_4:41088386-41088405 Msa0500580:intron 40.0%
AAATACGAGTTTGCCAACAC+AGG + chr3_4:41088566-41088585 Msa0500580:CDS 40.0%
AATACGAGTTTGCCAACACA+GGG + chr3_4:41088567-41088586 Msa0500580:CDS 40.0%
CGTTGTTCAACTACTCTTGA+TGG + chr3_4:41088598-41088617 Msa0500580:CDS 40.0%
!! TGGGGTAGGATTTTAATCAC+TGG + chr3_4:41088618-41088637 Msa0500580:intron 40.0%
TCAACTCATCAACCAGAAGT+TGG - chr3_4:41088647-41088666 None:intergenic 40.0%
TATCGGAAATGGAAATACCC+TGG - chr3_4:41088829-41088848 None:intergenic 40.0%
GTTTGTACGGTTATCGGAAA+TGG - chr3_4:41088840-41088859 None:intergenic 40.0%
GTGTGTGTTTGTACGGTTAT+CGG - chr3_4:41088846-41088865 None:intergenic 40.0%
TGCACAAGTGTGTGTTTGTA+CGG - chr3_4:41088853-41088872 None:intergenic 40.0%
GTTTCAACAAATAGGTACCC+TGG + chr3_4:41088943-41088962 Msa0500580:intron 40.0%
TTCAACAAATAGGTACCCTG+GGG + chr3_4:41088945-41088964 Msa0500580:intron 40.0%
CTTGCAATGGTAGCAATACT+TGG + chr3_4:41089138-41089157 Msa0500580:CDS 40.0%
! TGGACCAATTGATAACCTTG+TGG + chr3_4:41089191-41089210 Msa0500580:CDS 40.0%
TGCTCCACAAGGTTATCAAT+TGG - chr3_4:41089198-41089217 None:intergenic 40.0%
ATTGGTAAACCTTCAACAGC+AGG + chr3_4:41087804-41087823 Msa0500580:CDS 40.0%
TACGTTCCATCAAGATAGGT+CGG - chr3_4:41087939-41087958 None:intergenic 40.0%
TTAGGAGTCAAAATGCAGAG+AGG - chr3_4:41087972-41087991 None:intergenic 40.0%
CTTGAAAAGAGAACTAGCAC+TGG - chr3_4:41088010-41088029 None:intergenic 40.0%
AGGATCCTGAAAGCTTAAAG+TGG + chr3_4:41088101-41088120 Msa0500580:CDS 40.0%
TTTGCAATGCTTGGAGTCTT+GGG + chr3_4:41088154-41088173 Msa0500580:CDS 40.0%
! TTAGATCATCGTAGCTTTGC+AGG - chr3_4:41088323-41088342 None:intergenic 40.0%
TAGAGAATCACAGCCAAACA+TGG - chr3_4:41088383-41088402 None:intergenic 40.0%
TTGGCTGTGATTCTCTATCA+AGG + chr3_4:41088386-41088405 Msa0500580:intron 40.0%
AAATACGAGTTTGCCAACAC+AGG + chr3_4:41088566-41088585 Msa0500580:CDS 40.0%
AATACGAGTTTGCCAACACA+GGG + chr3_4:41088567-41088586 Msa0500580:CDS 40.0%
CGTTGTTCAACTACTCTTGA+TGG + chr3_4:41088598-41088617 Msa0500580:CDS 40.0%
!! TGGGGTAGGATTTTAATCAC+TGG + chr3_4:41088618-41088637 Msa0500580:intron 40.0%
TCAACTCATCAACCAGAAGT+TGG - chr3_4:41088647-41088666 None:intergenic 40.0%
TATCGGAAATGGAAATACCC+TGG - chr3_4:41088829-41088848 None:intergenic 40.0%
GTTTGTACGGTTATCGGAAA+TGG - chr3_4:41088840-41088859 None:intergenic 40.0%
GTGTGTGTTTGTACGGTTAT+CGG - chr3_4:41088846-41088865 None:intergenic 40.0%
TGCACAAGTGTGTGTTTGTA+CGG - chr3_4:41088853-41088872 None:intergenic 40.0%
GTTTCAACAAATAGGTACCC+TGG + chr3_4:41088943-41088962 Msa0500580:intron 40.0%
TTCAACAAATAGGTACCCTG+GGG + chr3_4:41088945-41088964 Msa0500580:intron 40.0%
CTTGCAATGGTAGCAATACT+TGG + chr3_4:41089138-41089157 Msa0500580:CDS 40.0%
! TGGACCAATTGATAACCTTG+TGG + chr3_4:41089191-41089210 Msa0500580:CDS 40.0%
TGCTCCACAAGGTTATCAAT+TGG - chr3_4:41089198-41089217 None:intergenic 40.0%
!! TTGATTTGTAGTCCCGGGAT+AGG + chr3_4:41087693-41087712 Msa0500580:five_prime_UTR 45.0%
TAATTATCCGCTCCTATCCC+GGG - chr3_4:41087708-41087727 None:intergenic 45.0%
CTAATTATCCGCTCCTATCC+CGG - chr3_4:41087709-41087728 None:intergenic 45.0%
ACGTTCCATCAAGATAGGTC+GGG - chr3_4:41087938-41087957 None:intergenic 45.0%
GGCTTACGTTCCATCAAGAT+AGG - chr3_4:41087943-41087962 None:intergenic 45.0%
! CAAAATGCAGAGAGGCGTAA+GGG - chr3_4:41087964-41087983 None:intergenic 45.0%
! TCAAAATGCAGAGAGGCGTA+AGG - chr3_4:41087965-41087984 None:intergenic 45.0%
AATCTCCAGGCAGACTGAAA+AGG - chr3_4:41088054-41088073 None:intergenic 45.0%
! TTCAGTCTGCCTGGAGATTT+TGG + chr3_4:41088055-41088074 Msa0500580:intron 45.0%
! TCAGTCTGCCTGGAGATTTT+GGG + chr3_4:41088056-41088075 Msa0500580:intron 45.0%
CATTCTCGCTTTGCAATGCT+TGG + chr3_4:41088145-41088164 Msa0500580:CDS 45.0%
CTTTGCAATGCTTGGAGTCT+TGG + chr3_4:41088153-41088172 Msa0500580:CDS 45.0%
GCACCAGCTTCAAACCAAAT+TGG - chr3_4:41088542-41088561 None:intergenic 45.0%
TCAACTACTCTTGATGGGGT+AGG + chr3_4:41088604-41088623 Msa0500580:intron 45.0%
!! AATCACTGGCTTCCAACTTC+TGG + chr3_4:41088632-41088651 Msa0500580:intron 45.0%
TCCTGGATCTCAAGCTAAAG+AGG + chr3_4:41088762-41088781 Msa0500580:CDS 45.0%
CCTGGATCTCAAGCTAAAGA+GGG + chr3_4:41088763-41088782 Msa0500580:CDS 45.0%
GCTAAAGAGGGTTCCTTCTT+TGG + chr3_4:41088775-41088794 Msa0500580:CDS 45.0%
AGAGGGTTCCTTCTTTGGAT+TGG + chr3_4:41088780-41088799 Msa0500580:CDS 45.0%
TGAAGCCTCCAATCCAAAGA+AGG - chr3_4:41088791-41088810 None:intergenic 45.0%
! TTTGGATTGGAGGCTTCACT+TGG + chr3_4:41088793-41088812 Msa0500580:CDS 45.0%
TCAACAAATAGGTACCCTGG+GGG + chr3_4:41088946-41088965 Msa0500580:intron 45.0%
ATGTCTTTAGCTAGGCCAAG+AGG - chr3_4:41088985-41089004 None:intergenic 45.0%
CAAGCTTCAGTGACTCATGT+TGG + chr3_4:41089171-41089190 Msa0500580:CDS 45.0%
GATTTGAGAGATGCTCCACA+AGG - chr3_4:41089209-41089228 None:intergenic 45.0%
! TGGAGCATCTCTCAAATCCA+TGG + chr3_4:41089211-41089230 Msa0500580:CDS 45.0%
!! TTGATTTGTAGTCCCGGGAT+AGG + chr3_4:41087693-41087712 Msa0500580:five_prime_UTR 45.0%
TAATTATCCGCTCCTATCCC+GGG - chr3_4:41087708-41087727 None:intergenic 45.0%
CTAATTATCCGCTCCTATCC+CGG - chr3_4:41087709-41087728 None:intergenic 45.0%
ACGTTCCATCAAGATAGGTC+GGG - chr3_4:41087938-41087957 None:intergenic 45.0%
GGCTTACGTTCCATCAAGAT+AGG - chr3_4:41087943-41087962 None:intergenic 45.0%
! CAAAATGCAGAGAGGCGTAA+GGG - chr3_4:41087964-41087983 None:intergenic 45.0%
! TCAAAATGCAGAGAGGCGTA+AGG - chr3_4:41087965-41087984 None:intergenic 45.0%
AATCTCCAGGCAGACTGAAA+AGG - chr3_4:41088054-41088073 None:intergenic 45.0%
! TTCAGTCTGCCTGGAGATTT+TGG + chr3_4:41088055-41088074 Msa0500580:intron 45.0%
! TCAGTCTGCCTGGAGATTTT+GGG + chr3_4:41088056-41088075 Msa0500580:intron 45.0%
CATTCTCGCTTTGCAATGCT+TGG + chr3_4:41088145-41088164 Msa0500580:CDS 45.0%
CTTTGCAATGCTTGGAGTCT+TGG + chr3_4:41088153-41088172 Msa0500580:CDS 45.0%
GCACCAGCTTCAAACCAAAT+TGG - chr3_4:41088542-41088561 None:intergenic 45.0%
TCAACTACTCTTGATGGGGT+AGG + chr3_4:41088604-41088623 Msa0500580:intron 45.0%
!! AATCACTGGCTTCCAACTTC+TGG + chr3_4:41088632-41088651 Msa0500580:intron 45.0%
TCCTGGATCTCAAGCTAAAG+AGG + chr3_4:41088762-41088781 Msa0500580:CDS 45.0%
CCTGGATCTCAAGCTAAAGA+GGG + chr3_4:41088763-41088782 Msa0500580:CDS 45.0%
GCTAAAGAGGGTTCCTTCTT+TGG + chr3_4:41088775-41088794 Msa0500580:CDS 45.0%
AGAGGGTTCCTTCTTTGGAT+TGG + chr3_4:41088780-41088799 Msa0500580:CDS 45.0%
TGAAGCCTCCAATCCAAAGA+AGG - chr3_4:41088791-41088810 None:intergenic 45.0%
! TTTGGATTGGAGGCTTCACT+TGG + chr3_4:41088793-41088812 Msa0500580:CDS 45.0%
TCAACAAATAGGTACCCTGG+GGG + chr3_4:41088946-41088965 Msa0500580:intron 45.0%
ATGTCTTTAGCTAGGCCAAG+AGG - chr3_4:41088985-41089004 None:intergenic 45.0%
CAAGCTTCAGTGACTCATGT+TGG + chr3_4:41089171-41089190 Msa0500580:CDS 45.0%
GATTTGAGAGATGCTCCACA+AGG - chr3_4:41089209-41089228 None:intergenic 45.0%
! TGGAGCATCTCTCAAATCCA+TGG + chr3_4:41089211-41089230 Msa0500580:CDS 45.0%
GTTCCATCAAGATAGGTCGG+GGG - chr3_4:41087936-41087955 None:intergenic 50.0%
CGTTCCATCAAGATAGGTCG+GGG - chr3_4:41087937-41087956 None:intergenic 50.0%
! GGTAACCTTTTCAGTCTGCC+TGG + chr3_4:41088046-41088065 Msa0500580:intron 50.0%
!!! GATTTTGGGTTCGACCCACT+TGG + chr3_4:41088070-41088089 Msa0500580:CDS 50.0%
GATCCTCTCCAAGTCCAAGT+GGG - chr3_4:41088087-41088106 None:intergenic 50.0%
GTGGTATGTGCAAGCAGAGT+TGG + chr3_4:41088120-41088139 Msa0500580:CDS 50.0%
!! GAGGTTGGATTGGCCATGTT+TGG + chr3_4:41088367-41088386 Msa0500580:intron 50.0%
!! CCCTCTTTAGCTTGAGATCC+AGG - chr3_4:41088766-41088785 None:intergenic 50.0%
! GGGTTCCTTCTTTGGATTGG+AGG + chr3_4:41088783-41088802 Msa0500580:CDS 50.0%
GGTCCTCTGCTAAATCCTCT+TGG + chr3_4:41088967-41088986 Msa0500580:CDS 50.0%
AGGCCAAGAGGATTTAGCAG+AGG - chr3_4:41088973-41088992 None:intergenic 50.0%
TGTTACAGGGCGACTTGCAA+TGG + chr3_4:41089125-41089144 Msa0500580:intron 50.0%
GTTCCATCAAGATAGGTCGG+GGG - chr3_4:41087936-41087955 None:intergenic 50.0%
CGTTCCATCAAGATAGGTCG+GGG - chr3_4:41087937-41087956 None:intergenic 50.0%
! GGTAACCTTTTCAGTCTGCC+TGG + chr3_4:41088046-41088065 Msa0500580:intron 50.0%
!!! GATTTTGGGTTCGACCCACT+TGG + chr3_4:41088070-41088089 Msa0500580:CDS 50.0%
GATCCTCTCCAAGTCCAAGT+GGG - chr3_4:41088087-41088106 None:intergenic 50.0%
GTGGTATGTGCAAGCAGAGT+TGG + chr3_4:41088120-41088139 Msa0500580:CDS 50.0%
!! GAGGTTGGATTGGCCATGTT+TGG + chr3_4:41088367-41088386 Msa0500580:intron 50.0%
!! CCCTCTTTAGCTTGAGATCC+AGG - chr3_4:41088766-41088785 None:intergenic 50.0%
! GGGTTCCTTCTTTGGATTGG+AGG + chr3_4:41088783-41088802 Msa0500580:CDS 50.0%
GGTCCTCTGCTAAATCCTCT+TGG + chr3_4:41088967-41088986 Msa0500580:CDS 50.0%
AGGCCAAGAGGATTTAGCAG+AGG - chr3_4:41088973-41088992 None:intergenic 50.0%
TGTTACAGGGCGACTTGCAA+TGG + chr3_4:41089125-41089144 Msa0500580:intron 50.0%
TTGTAGTCCCGGGATAGGAG+CGG + chr3_4:41087698-41087717 Msa0500580:five_prime_UTR 55.0%
CAGTGGTGTCCTGCTGTTGA+AGG - chr3_4:41087816-41087835 None:intergenic 55.0%
CTTCAACAGCAGGACACCAC+TGG + chr3_4:41087814-41087833 Msa0500580:CDS 55.0%
GATCCCCCGACCTATCTTGA+TGG + chr3_4:41087930-41087949 Msa0500580:CDS 55.0%
GGGTCGAACCCAAAATCTCC+AGG - chr3_4:41088067-41088086 None:intergenic 55.0%
GGATCCTCTCCAAGTCCAAG+TGG - chr3_4:41088088-41088107 None:intergenic 55.0%
CTTCGCGTCGCAGGAGTTAA+TGG + chr3_4:41088512-41088531 Msa0500580:CDS 55.0%
AACGACGAGTGTCCCTGTGT+TGG - chr3_4:41088582-41088601 None:intergenic 55.0%
GGATTGGAGGCTTCACTTGG+AGG + chr3_4:41088796-41088815 Msa0500580:CDS 55.0%
TCACTTGGAGGCTTAGAGCC+AGG + chr3_4:41088808-41088827 Msa0500580:CDS 55.0%
CACTTGGAGGCTTAGAGCCA+GGG + chr3_4:41088809-41088828 Msa0500580:CDS 55.0%
GATTTAGCAGAGGACCCCCA+GGG - chr3_4:41088963-41088982 None:intergenic 55.0%
TTGTAGTCCCGGGATAGGAG+CGG + chr3_4:41087698-41087717 Msa0500580:five_prime_UTR 55.0%
CAGTGGTGTCCTGCTGTTGA+AGG - chr3_4:41087816-41087835 None:intergenic 55.0%
CTTCAACAGCAGGACACCAC+TGG + chr3_4:41087814-41087833 Msa0500580:CDS 55.0%
GATCCCCCGACCTATCTTGA+TGG + chr3_4:41087930-41087949 Msa0500580:CDS 55.0%
GGGTCGAACCCAAAATCTCC+AGG - chr3_4:41088067-41088086 None:intergenic 55.0%
GGATCCTCTCCAAGTCCAAG+TGG - chr3_4:41088088-41088107 None:intergenic 55.0%
CTTCGCGTCGCAGGAGTTAA+TGG + chr3_4:41088512-41088531 Msa0500580:CDS 55.0%
AACGACGAGTGTCCCTGTGT+TGG - chr3_4:41088582-41088601 None:intergenic 55.0%
GGATTGGAGGCTTCACTTGG+AGG + chr3_4:41088796-41088815 Msa0500580:CDS 55.0%
TCACTTGGAGGCTTAGAGCC+AGG + chr3_4:41088808-41088827 Msa0500580:CDS 55.0%
CACTTGGAGGCTTAGAGCCA+GGG + chr3_4:41088809-41088828 Msa0500580:CDS 55.0%
GATTTAGCAGAGGACCCCCA+GGG - chr3_4:41088963-41088982 None:intergenic 55.0%
CAGCACAACAGCGACCCACA+TGG + chr3_4:41087895-41087914 Msa0500580:CDS 60.0%
TCAAGTCCCGGGAGCCATGT+GGG - chr3_4:41087912-41087931 None:intergenic 60.0%
ATCAAGTCCCGGGAGCCATG+TGG - chr3_4:41087913-41087932 None:intergenic 60.0%
TAGGTCGGGGGATCAAGTCC+CGG - chr3_4:41087924-41087943 None:intergenic 60.0%
GGGTTCGACCCACTTGGACT+TGG + chr3_4:41088076-41088095 Msa0500580:CDS 60.0%
CGACCCACTTGGACTTGGAG+AGG + chr3_4:41088081-41088100 Msa0500580:CDS 60.0%
ATGCAGCTACTTCGCGTCGC+AGG + chr3_4:41088503-41088522 Msa0500580:intron 60.0%
GGATTTAGCAGAGGACCCCC+AGG - chr3_4:41088964-41088983 None:intergenic 60.0%
CAGCACAACAGCGACCCACA+TGG + chr3_4:41087895-41087914 Msa0500580:CDS 60.0%
TCAAGTCCCGGGAGCCATGT+GGG - chr3_4:41087912-41087931 None:intergenic 60.0%
ATCAAGTCCCGGGAGCCATG+TGG - chr3_4:41087913-41087932 None:intergenic 60.0%
TAGGTCGGGGGATCAAGTCC+CGG - chr3_4:41087924-41087943 None:intergenic 60.0%
GGGTTCGACCCACTTGGACT+TGG + chr3_4:41088076-41088095 Msa0500580:CDS 60.0%
CGACCCACTTGGACTTGGAG+AGG + chr3_4:41088081-41088100 Msa0500580:CDS 60.0%
ATGCAGCTACTTCGCGTCGC+AGG + chr3_4:41088503-41088522 Msa0500580:intron 60.0%
GGATTTAGCAGAGGACCCCC+AGG - chr3_4:41088964-41088983 None:intergenic 60.0%
!! CAGCAGGACACCACTGGCTC+AGG + chr3_4:41087820-41087839 Msa0500580:CDS 65.0%
CAGGCCTGCTGCTGCAGGAA+CGG + chr3_4:41087839-41087858 Msa0500580:CDS 65.0%
AGGCCTGCTGCTGCAGGAAC+GGG + chr3_4:41087840-41087859 Msa0500580:CDS 65.0%
ACTCCCGTTCCTGCAGCAGC+AGG - chr3_4:41087846-41087865 None:intergenic 65.0%
ACAGCGACCCACATGGCTCC+CGG + chr3_4:41087902-41087921 Msa0500580:CDS 65.0%
AGGTCGGGGGATCAAGTCCC+GGG - chr3_4:41087923-41087942 None:intergenic 65.0%
!! CAGCAGGACACCACTGGCTC+AGG + chr3_4:41087820-41087839 Msa0500580:CDS 65.0%
CAGGCCTGCTGCTGCAGGAA+CGG + chr3_4:41087839-41087858 Msa0500580:CDS 65.0%
AGGCCTGCTGCTGCAGGAAC+GGG + chr3_4:41087840-41087859 Msa0500580:CDS 65.0%
ACTCCCGTTCCTGCAGCAGC+AGG - chr3_4:41087846-41087865 None:intergenic 65.0%
ACAGCGACCCACATGGCTCC+CGG + chr3_4:41087902-41087921 Msa0500580:CDS 65.0%
AGGTCGGGGGATCAAGTCCC+GGG - chr3_4:41087923-41087942 None:intergenic 65.0%
CAGCAGCAGGCCTGAGCCAG+TGG - chr3_4:41087833-41087852 None:intergenic 70.0%
TGGCTCAGGCCTGCTGCTGC+AGG + chr3_4:41087834-41087853 Msa0500580:CDS 70.0%
CAGCGACCCACATGGCTCCC+GGG + chr3_4:41087903-41087922 Msa0500580:CDS 70.0%
CAGCAGCAGGCCTGAGCCAG+TGG - chr3_4:41087833-41087852 None:intergenic 70.0%
TGGCTCAGGCCTGCTGCTGC+AGG + chr3_4:41087834-41087853 Msa0500580:CDS 70.0%
CAGCGACCCACATGGCTCCC+GGG + chr3_4:41087903-41087922 Msa0500580:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 41087670 41089527 41087670 ID=Msa0500580;Name=Msa0500580
chr3_4 mRNA 41087670 41089527 41087670 ID=Msa0500580-mRNA-1;Parent=Msa0500580;Name=Msa0500580-mRNA-1;_AED=0.35;_eAED=0.35;_QI=65|1|1|1|1|1|6|252|267
chr3_4 exon 41087670 41087955 41087670 ID=Msa0500580-mRNA-1:exon:8475;Parent=Msa0500580-mRNA-1
chr3_4 exon 41088060 41088192 41088060 ID=Msa0500580-mRNA-1:exon:8476;Parent=Msa0500580-mRNA-1
chr3_4 exon 41088509 41088621 41088509 ID=Msa0500580-mRNA-1:exon:8477;Parent=Msa0500580-mRNA-1
chr3_4 exon 41088726 41088830 41088726 ID=Msa0500580-mRNA-1:exon:8478;Parent=Msa0500580-mRNA-1
chr3_4 exon 41088957 41089045 41088957 ID=Msa0500580-mRNA-1:exon:8479;Parent=Msa0500580-mRNA-1
chr3_4 exon 41089133 41089527 41089133 ID=Msa0500580-mRNA-1:exon:8480;Parent=Msa0500580-mRNA-1
chr3_4 five_prime_UTR 41087670 41087734 41087670 ID=Msa0500580-mRNA-1:five_prime_utr;Parent=Msa0500580-mRNA-1
chr3_4 CDS 41087735 41087955 41087735 ID=Msa0500580-mRNA-1:cds;Parent=Msa0500580-mRNA-1
chr3_4 CDS 41088060 41088192 41088060 ID=Msa0500580-mRNA-1:cds;Parent=Msa0500580-mRNA-1
chr3_4 CDS 41088509 41088621 41088509 ID=Msa0500580-mRNA-1:cds;Parent=Msa0500580-mRNA-1
chr3_4 CDS 41088726 41088830 41088726 ID=Msa0500580-mRNA-1:cds;Parent=Msa0500580-mRNA-1
chr3_4 CDS 41088957 41089045 41088957 ID=Msa0500580-mRNA-1:cds;Parent=Msa0500580-mRNA-1
chr3_4 CDS 41089133 41089275 41089133 ID=Msa0500580-mRNA-1:cds;Parent=Msa0500580-mRNA-1
chr3_4 three_prime_UTR 41089276 41089527 41089276 ID=Msa0500580-mRNA-1:three_prime_utr;Parent=Msa0500580-mRNA-1
Gene Sequence

>Msa0500580

ATGGTTGCACTTGCAGCAATAGCAAGAAGCTTCCATTTCCAGCAACATTCTTTAATCAACAGCAATGTCATTGGTAAACCTTCAACAGCAGGACACCACTGGCTCAGGCCTGCTGCTGCAGGAACGGGAGTCACTCCACGTTATAAACAAATTTGTGCTGCAGCACAACAGCGACCCACATGGCTCCCGGGACTTGATCCCCCGACCTATCTTGATGGAACTCTGCCTGGAGATTTTGGGTTCGACCCACTTGGACTTGGAGAGGATCCTGAAAGCTTAAAGTGGTATGTGCAAGCAGAGTTGGTTCATTCTCGCTTTGCAATGCTTGGAGTCTTGGGAATTTTAGTCACAGATCTACTTCGCGTCGCAGGAGTTAATGGCATACCAATTTGGTTTGAAGCTGGTGCAGTAAAATACGAGTTTGCCAACACAGGGACACTCGTCGTTGTTCAACTACTCTTGATGGGGTATGCTGAAACAAAAAGGTACATGGATTTTGTTAGTCCTGGATCTCAAGCTAAAGAGGGTTCCTTCTTTGGATTGGAGGCTTCACTTGGAGGCTTAGAGCCAGGGTACCCTGGGGGTCCTCTGCTAAATCCTCTTGGCCTAGCTAAAGACATTAAAAGTGCTCGTGAATGGAAGCTTAAAGAGATCAAGAATGGGCGACTTGCAATGGTAGCAATACTTGGTATCTTTGTACAAGCTTCAGTGACTCATGTTGGACCAATTGATAACCTTGTGGAGCATCTCTCAAATCCATGGCATAAAACTATTATTCAGACCCTTGCAAGTTCTAGTTCTTAG

Protein sequence

>Msa0500580

MVALAAIARSFHFQQHSLINSNVIGKPSTAGHHWLRPAAAGTGVTPRYKQICAAAQQRPTWLPGLDPPTYLDGTLPGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVLGILVTDLLRVAGVNGIPIWFEAGAVKYEFANTGTLVVVQLLLMGYAETKRYMDFVSPGSQAKEGSFFGLEASLGGLEPGYPGGPLLNPLGLAKDIKSAREWKLKEIKNGRLAMVAILGIFVQASVTHVGPIDNLVEHLSNPWHKTIIQTLASSSS*