Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0529060 | XP_024630318.1 | 84.694 | 294 | 11 | 1 | 1 | 260 | 1 | 294 | 4.52e-173 | 489 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0529060 | A0A396I5P8 | 84.694 | 294 | 11 | 1 | 1 | 260 | 1 | 294 | 2.16e-173 | 489 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004180 | Msa0529060 | 0.826732 | 2.308849e-54 | -8.615850e-47 |
| Msa0024320 | Msa0529060 | 0.803488 | 3.404205e-49 | -8.615850e-47 |
| Msa0042210 | Msa0529060 | 0.843460 | 1.382337e-58 | -8.615850e-47 |
| Msa0051710 | Msa0529060 | 0.811053 | 8.486524e-51 | -8.615850e-47 |
| Msa0070580 | Msa0529060 | 0.813425 | 2.576167e-51 | -8.615850e-47 |
| Msa0075080 | Msa0529060 | 0.825229 | 5.254093e-54 | -8.615850e-47 |
| Msa0076590 | Msa0529060 | 0.814365 | 1.599166e-51 | -8.615850e-47 |
| Msa0078160 | Msa0529060 | 0.810744 | 9.896546e-51 | -8.615850e-47 |
| Msa0078170 | Msa0529060 | 0.810001 | 1.431889e-50 | -8.615850e-47 |
| Msa0102290 | Msa0529060 | 0.806274 | 8.908114e-50 | -8.615850e-47 |
| Msa0122930 | Msa0529060 | 0.817576 | 3.070231e-52 | -8.615850e-47 |
| Msa0127510 | Msa0529060 | 0.803219 | 3.869537e-49 | -8.615850e-47 |
| Msa0136090 | Msa0529060 | -0.801117 | 1.047646e-48 | -8.615850e-47 |
| Msa0145590 | Msa0529060 | 0.807900 | 4.031607e-50 | -8.615850e-47 |
| Msa0162170 | Msa0529060 | 0.833813 | 4.297494e-56 | -8.615850e-47 |
| Msa0167570 | Msa0529060 | 0.827081 | 1.904794e-54 | -8.615850e-47 |
| Msa0168470 | Msa0529060 | 0.818773 | 1.645656e-52 | -8.615850e-47 |
| Msa0185540 | Msa0529060 | 0.813809 | 2.120564e-51 | -8.615850e-47 |
| Msa0191180 | Msa0529060 | 0.827071 | 1.915148e-54 | -8.615850e-47 |
| Msa0224180 | Msa0529060 | 0.831607 | 1.516370e-55 | -8.615850e-47 |
| Msa0238460 | Msa0529060 | 0.810924 | 9.050184e-51 | -8.615850e-47 |
| Msa0380470 | Msa0529060 | 0.812315 | 4.509453e-51 | -8.615850e-47 |
| Msa0382050 | Msa0529060 | 0.803454 | 3.459851e-49 | -8.615850e-47 |
| Msa0386230 | Msa0529060 | 0.821020 | 5.039747e-53 | -8.615850e-47 |
| Msa0390760 | Msa0529060 | 0.831469 | 1.640359e-55 | -8.615850e-47 |
| Msa0429990 | Msa0529060 | 0.802359 | 5.824757e-49 | -8.615850e-47 |
| Msa0431550 | Msa0529060 | 0.812578 | 3.951985e-51 | -8.615850e-47 |
| Msa0436660 | Msa0529060 | 0.806702 | 7.235549e-50 | -8.615850e-47 |
| Msa0446110 | Msa0529060 | 0.808584 | 2.882440e-50 | -8.615850e-47 |
| Msa0464730 | Msa0529060 | 0.804716 | 1.890294e-49 | -8.615850e-47 |
| Msa0469770 | Msa0529060 | 0.812053 | 5.145534e-51 | -8.615850e-47 |
| Msa0471130 | Msa0529060 | 0.806247 | 9.024488e-50 | -8.615850e-47 |
| Msa0474660 | Msa0529060 | 0.807744 | 4.352003e-50 | -8.615850e-47 |
| Msa0476140 | Msa0529060 | 0.819714 | 1.004775e-52 | -8.615850e-47 |
| Msa0476560 | Msa0529060 | 0.801818 | 7.523058e-49 | -8.615850e-47 |
| Msa0261020 | Msa0529060 | 0.814033 | 1.892839e-51 | -8.615850e-47 |
| Msa0264230 | Msa0529060 | -0.801454 | 8.936872e-49 | -8.615850e-47 |
| Msa0279800 | Msa0529060 | 0.806617 | 7.542073e-50 | -8.615850e-47 |
| Msa0284980 | Msa0529060 | 0.807276 | 5.471204e-50 | -8.615850e-47 |
| Msa0285510 | Msa0529060 | 0.806525 | 7.884535e-50 | -8.615850e-47 |
| Msa0291320 | Msa0529060 | -0.802991 | 4.313338e-49 | -8.615850e-47 |
| Msa0293060 | Msa0529060 | 0.800861 | 1.181543e-48 | -8.615850e-47 |
| Msa0322480 | Msa0529060 | 0.803417 | 3.521873e-49 | -8.615850e-47 |
| Msa0487480 | Msa0529060 | 0.809992 | 1.438410e-50 | -8.615850e-47 |
| Msa0490740 | Msa0529060 | 0.809515 | 1.821057e-50 | -8.615850e-47 |
| Msa0500580 | Msa0529060 | 0.810507 | 1.113564e-50 | -8.615850e-47 |
| Msa0506700 | Msa0529060 | 0.819447 | 1.155647e-52 | -8.615850e-47 |
| Msa0512930 | Msa0529060 | 0.816186 | 6.295168e-52 | -8.615850e-47 |
| Msa0514630 | Msa0529060 | 0.835219 | 1.905482e-56 | -8.615850e-47 |
| Msa0524710 | Msa0529060 | -0.806439 | 8.222970e-50 | -8.615850e-47 |
| Msa0529060 | Msa0529070 | 0.988514 | 2.561964e-174 | -8.615850e-47 |
| Msa0529060 | Msa0538020 | 0.808481 | 3.032079e-50 | -8.615850e-47 |
| Msa0529060 | Msa0543010 | 0.820743 | 5.836795e-53 | -8.615850e-47 |
| Msa0529060 | Msa0549700 | 0.801308 | 9.571138e-49 | -8.615850e-47 |
| Msa0529060 | Msa0562040 | 0.803195 | 3.914113e-49 | -8.615850e-47 |
| Msa0529060 | Msa0597800 | -0.819897 | 9.124367e-53 | -8.615850e-47 |
| Msa0529060 | Msa0598470 | 0.803704 | 3.069504e-49 | -8.615850e-47 |
| Msa0529060 | Msa0608720 | 0.812160 | 4.876416e-51 | -8.615850e-47 |
| Msa0529060 | Msa0616570 | 0.803899 | 2.796291e-49 | -8.615850e-47 |
| Msa0529060 | Msa0619450 | 0.828617 | 8.140164e-55 | -8.615850e-47 |
| Msa0529060 | Msa0619530 | 0.818245 | 2.167755e-52 | -8.615850e-47 |
| Msa0529060 | Msa0619960 | 0.828336 | 9.511929e-55 | -8.615850e-47 |
| Msa0529060 | Msa0620050 | 0.824681 | 7.074736e-54 | -8.615850e-47 |
| Msa0529060 | Msa0624260 | 0.821814 | 3.305834e-53 | -8.615850e-47 |
| Msa0529060 | Msa0624360 | 0.819807 | 9.564415e-53 | -8.615850e-47 |
| Msa0529060 | Msa0637590 | -0.805138 | 1.542767e-49 | -8.615850e-47 |
| Msa0529060 | Msa0649140 | 0.806614 | 7.552203e-50 | -8.615850e-47 |
| Msa0529060 | Msa0655980 | 0.804685 | 1.918831e-49 | -8.615850e-47 |
| Msa0529060 | Msa0659580 | 0.828359 | 9.393786e-55 | -8.615850e-47 |
| Msa0529060 | Msa0667840 | 0.807484 | 4.942225e-50 | -8.615850e-47 |
| Msa0529060 | Msa0673620 | 0.833936 | 4.005405e-56 | -8.615850e-47 |
| Msa0529060 | Msa0677250 | 0.803759 | 2.990202e-49 | -8.615850e-47 |
| Msa0529060 | Msa0681100 | 0.820138 | 8.034981e-53 | -8.615850e-47 |
| Msa0529060 | Msa0699200 | 0.837880 | 4.003244e-57 | -8.615850e-47 |
| Msa0529060 | Msa0699900 | 0.803952 | 2.727173e-49 | -8.615850e-47 |
| Msa0529060 | Msa0708360 | 0.830528 | 2.790953e-55 | -8.615850e-47 |
| Msa0529060 | Msa0711860 | 0.810217 | 1.286270e-50 | -8.615850e-47 |
| Msa0529060 | Msa0753590 | 0.816293 | 5.959494e-52 | -8.615850e-47 |
| Msa0529060 | Msa0766910 | 0.804237 | 2.378360e-49 | -8.615850e-47 |
| Msa0529060 | Msa0784780 | 0.829116 | 6.161206e-55 | -8.615850e-47 |
| Msa0529060 | Msa0799150 | 0.834324 | 3.201484e-56 | -8.615850e-47 |
| Msa0529060 | Msa0807840 | 0.806829 | 6.803314e-50 | -8.615850e-47 |
| Msa0529060 | Msa0814660 | -0.805962 | 1.036139e-49 | -8.615850e-47 |
| Msa0529060 | Msa0858250 | 0.821263 | 4.431235e-53 | -8.615850e-47 |
| Msa0529060 | Msa0868500 | 0.800422 | 1.452092e-48 | -8.615850e-47 |
| Msa0529060 | Msa0882480 | 0.802184 | 6.328434e-49 | -8.615850e-47 |
| Msa0529060 | Msa0941410 | 0.805953 | 1.040515e-49 | -8.615850e-47 |
| Msa0529060 | Msa0961200 | 0.803079 | 4.137586e-49 | -8.615850e-47 |
| Msa0529060 | Msa0967540 | 0.816649 | 4.958903e-52 | -8.615850e-47 |
| Msa0529060 | Msa0970160 | 0.806586 | 7.656974e-50 | -8.615850e-47 |
| Msa0529060 | Msa0974410 | 0.800161 | 1.641361e-48 | -8.615850e-47 |
| Msa0529060 | Msa0978540 | 0.815693 | 8.111114e-52 | -8.615850e-47 |
| Msa0529060 | Msa0995130 | 0.801107 | 1.052511e-48 | -8.615850e-47 |
| Msa0529060 | Msa1031190 | 0.800620 | 1.323371e-48 | -8.615850e-47 |
| Msa0529060 | Msa1040330 | -0.804195 | 2.427698e-49 | -8.615850e-47 |
| Msa0529060 | Msa1045750 | 0.802512 | 5.417621e-49 | -8.615850e-47 |
| Msa0529060 | Msa1047390 | 0.805443 | 1.331809e-49 | -8.615850e-47 |
| Msa0529060 | Msa1058550 | 0.825874 | 3.694465e-54 | -8.615850e-47 |
| Msa0529060 | Msa1076530 | 0.813820 | 2.108683e-51 | -8.615850e-47 |
| Msa0529060 | Msa1095880 | 0.814774 | 1.297884e-51 | -8.615850e-47 |
| Msa0529060 | Msa1128850 | 0.810367 | 1.194215e-50 | -8.615850e-47 |
| Msa0529060 | Msa1131300 | 0.832418 | 9.560553e-56 | -8.615850e-47 |
| Msa0529060 | Msa1136770 | 0.813155 | 2.952989e-51 | -8.615850e-47 |
| Msa0529060 | Msa1148100 | 0.811926 | 5.484270e-51 | -8.615850e-47 |
| Msa0529060 | Msa1156100 | 0.824006 | 1.019407e-53 | -8.615850e-47 |
| Msa0529060 | Msa1163130 | 0.801411 | 9.119644e-49 | -8.615850e-47 |
| Msa0529060 | Msa1163230 | 0.804590 | 2.008589e-49 | -8.615850e-47 |
| Msa0529060 | Msa1190300 | 0.816079 | 6.651751e-52 | -8.615850e-47 |
| Msa0529060 | Msa1190320 | 0.807244 | 5.557315e-50 | -8.615850e-47 |
| Msa0529060 | Msa1190670 | 0.807854 | 4.123405e-50 | -8.615850e-47 |
| Msa0529060 | Msa1191270 | -0.814567 | 1.442950e-51 | -8.615850e-47 |
| Msa0529060 | Msa1203320 | 0.820515 | 6.587162e-53 | -8.615850e-47 |
| Msa0529060 | Msa1222900 | 0.823279 | 1.508487e-53 | -8.615850e-47 |
| Msa0529060 | Msa1244940 | 0.808930 | 2.431060e-50 | -8.615850e-47 |
| Msa0529060 | Msa1266750 | 0.801367 | 9.309612e-49 | -8.615850e-47 |
| Msa0529060 | Msa1278120 | 0.820778 | 5.730727e-53 | -8.615850e-47 |
| Msa0529060 | Msa1287100 | 0.815490 | 8.999933e-52 | -8.615850e-47 |
| Msa0529060 | Msa1303690 | 0.807587 | 4.699549e-50 | -8.615850e-47 |
| Msa0529060 | Msa1317380 | 0.809167 | 2.163611e-50 | -8.615850e-47 |
| Msa0529060 | Msa1325260 | 0.826813 | 2.207903e-54 | -8.615850e-47 |
| Msa0529060 | Msa1330080 | 0.809247 | 2.079854e-50 | -8.615850e-47 |
| Msa0529060 | Msa1363170 | 0.808008 | 3.824830e-50 | -8.615850e-47 |
| Msa0529060 | Msa1369390 | 0.800424 | 1.450781e-48 | -8.615850e-47 |
| Msa0529060 | Msa1369400 | 0.802851 | 4.610391e-49 | -8.615850e-47 |
| Msa0529060 | Msa1375650 | 0.817865 | 2.641690e-52 | -8.615850e-47 |
| Msa0529060 | Msa1379270 | 0.804859 | 1.764260e-49 | -8.615850e-47 |
| Msa0529060 | Msa1398150 | 0.800395 | 1.470655e-48 | -8.615850e-47 |
| Msa0529060 | Msa1437590 | -0.805971 | 1.031789e-49 | -8.615850e-47 |
| Msa0529060 | Msa1439000 | 0.809793 | 1.587537e-50 | -8.615850e-47 |
| Msa0529060 | Msa1460340 | 0.802683 | 4.995008e-49 | -8.615850e-47 |
| Msa0529060 | Msa1462700 | 0.822080 | 2.868332e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0529060 | MtrunA17_Chr4g0021461 | 84.694 | 294 | 11 | 1 | 1 | 260 | 1 | 294 | 4.16e-177 | 489 |
| Msa0529060 | MtrunA17_Chr8g0361751 | 39.796 | 98 | 59 | 0 | 154 | 251 | 219 | 316 | 2.57e-17 | 80.1 |
| Msa0529060 | MtrunA17_Chr1g0202351 | 34.021 | 97 | 64 | 0 | 155 | 251 | 210 | 306 | 4.44e-13 | 67.8 |
| Msa0529060 | MtrunA17_Chr8g0387651 | 29.932 | 147 | 91 | 2 | 117 | 251 | 190 | 336 | 1.06e-12 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0529060 | AT2G20725.1 | 50.820 | 183 | 89 | 1 | 76 | 257 | 119 | 301 | 5.51e-59 | 189 |
| Msa0529060 | AT1G14270.4 | 42.000 | 100 | 58 | 0 | 160 | 259 | 113 | 212 | 6.02e-19 | 83.2 |
| Msa0529060 | AT1G14270.3 | 42.000 | 100 | 58 | 0 | 160 | 259 | 113 | 212 | 6.02e-19 | 83.2 |
| Msa0529060 | AT1G14270.2 | 42.000 | 100 | 58 | 0 | 160 | 259 | 133 | 232 | 9.48e-19 | 83.2 |
| Msa0529060 | AT1G14270.1 | 34.228 | 149 | 94 | 1 | 115 | 259 | 190 | 338 | 3.86e-18 | 83.2 |
| Msa0529060 | AT5G60750.1 | 32.990 | 97 | 65 | 0 | 155 | 251 | 243 | 339 | 4.54e-12 | 65.5 |
Find 52 sgRNAs with CRISPR-Local
Find 395 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGACAGATTACTTGGCTTTA+AGG | 0.139149 | 4_1:+2227785 | Msa0529060:CDS |
| CTGCATTGTCACTCCTCTTT+TGG | 0.166860 | 4_1:+2231344 | Msa0529060:CDS |
| ATTTGGGTTTATTGCTCTTC+TGG | 0.227639 | 4_1:+2227740 | Msa0529060:CDS |
| TTGTCATCAGCTCTGGGATT+TGG | 0.232068 | 4_1:+2227723 | Msa0529060:CDS |
| TGTCATCAGCTCTGGGATTT+GGG | 0.270923 | 4_1:+2227724 | Msa0529060:CDS |
| TTCCCGTAACACTGAGTAAA+AGG | 0.285731 | 4_1:-2226344 | None:intergenic |
| TCCTTGGATGCTCCTATTGC+TGG | 0.317162 | 4_1:+2231511 | Msa0529060:CDS |
| CTACTTGCTGACAGATTACT+TGG | 0.328616 | 4_1:+2227777 | Msa0529060:CDS |
| AATTTCCCACTCAACTTGAT+AGG | 0.351762 | 4_1:+2226224 | Msa0529060:CDS |
| TTTGTACAACTGTTCATCAT+TGG | 0.365425 | 4_1:+2231483 | Msa0529060:CDS |
| TACAGCTTGTTGCCACTTCA+TGG | 0.373289 | 4_1:-2231412 | None:intergenic |
| TTCAGTGCAATTCACTTCTC+TGG | 0.383677 | 4_1:+2231453 | Msa0529060:CDS |
| CAAATTTCCAGTCCAGCAAT+AGG | 0.384377 | 4_1:-2231523 | None:intergenic |
| ATATATGTCATGTCAGTAAC+GGG | 0.385237 | 4_1:+2226178 | None:intergenic |
| TTCATCATTGGGTGTGTCCT+TGG | 0.388968 | 4_1:+2231495 | Msa0529060:CDS |
| AATTATTGAGTGACAGGAAC+TGG | 0.398989 | 4_1:+2227697 | Msa0529060:CDS |
| CTCTTGAGATATCACTGTTT+AGG | 0.403202 | 4_1:-2231302 | None:intergenic |
| TTGGAAGAAGTTGTTTATAG+AGG | 0.413244 | 4_1:+2231363 | Msa0529060:CDS |
| TTGAATGGTAAGAAGAGATA+TGG | 0.430408 | 4_1:-2227589 | None:intergenic |
| TTGTACAACTGTTCATCATT+GGG | 0.432716 | 4_1:+2231484 | Msa0529060:CDS |
| TTACTCAGTGTTACGGGAAG+AGG | 0.442324 | 4_1:+2226348 | Msa0529060:CDS |
| TCTTGAGTTTAATGCGGCTC+TGG | 0.446196 | 4_1:+2227614 | Msa0529060:CDS |
| CCAAGAGGTGCCATTGCAAA+AGG | 0.465524 | 4_1:+2226305 | Msa0529060:CDS |
| GAAAAGATAAAGAACAAGAT+TGG | 0.486664 | 4_1:-2226401 | None:intergenic |
| GGATGCTCCTATTGCTGGAC+TGG | 0.488522 | 4_1:+2231516 | Msa0529060:CDS |
| ATTAAACTCAAGAACTTGAA+TGG | 0.494812 | 4_1:-2227604 | None:intergenic |
| CATGGCAGAGTGGTGATGTA+TGG | 0.496794 | 4_1:+2226377 | Msa0529060:CDS |
| TAAACAACTTCTTCCAAAAG+AGG | 0.497470 | 4_1:-2231357 | None:intergenic |
| AGGAGGATCTCCTTCAATGT+TGG | 0.499718 | 4_1:-2231282 | None:intergenic |
| ATAACAAATTATTGAGTGAC+AGG | 0.502222 | 4_1:+2227691 | Msa0529060:CDS |
| TCCCACTCAACTTGATAGGT+TGG | 0.507603 | 4_1:+2226228 | Msa0529060:CDS |
| TTGAGATATCACTGTTTAGG+AGG | 0.536495 | 4_1:-2231299 | None:intergenic |
| TATATATGTCATGTCAGTAA+CGG | 0.555577 | 4_1:+2226177 | None:intergenic |
| TTGTTGCCACTTCATGGTGG+AGG | 0.558411 | 4_1:-2231406 | None:intergenic |
| CAAATAGAAACTCGAAATTG+AGG | 0.559048 | 4_1:+2226281 | Msa0529060:CDS |
| TCCAGCAATAGGAGCATCCA+AGG | 0.564400 | 4_1:-2231512 | None:intergenic |
| TGTTAGCAATCCAACATTGA+AGG | 0.566242 | 4_1:+2231272 | Msa0529060:CDS |
| CACTTTCCTCCACCATGAAG+TGG | 0.568923 | 4_1:+2231400 | Msa0529060:CDS |
| AAACTTGAAAATTTATACTG+TGG | 0.587683 | 4_1:-2227660 | None:intergenic |
| TTTATACTGTGGTTTAGCCG+TGG | 0.593031 | 4_1:-2227649 | None:intergenic |
| TACCAACCTATCAAGTTGAG+TGG | 0.599341 | 4_1:-2226230 | None:intergenic |
| CATACATCACCACTCTGCCA+TGG | 0.603331 | 4_1:-2226376 | None:intergenic |
| ACCAACCTATCAAGTTGAGT+GGG | 0.612583 | 4_1:-2226229 | None:intergenic |
| AGCTTGTTGCCACTTCATGG+TGG | 0.613499 | 4_1:-2231409 | None:intergenic |
| GTACAAAGAATGAATAACAA+TGG | 0.630175 | 4_1:-2231553 | None:intergenic |
| TCAAGTTCTTGAGTTTAATG+CGG | 0.637510 | 4_1:+2227608 | Msa0529060:CDS |
| TCTGGTTGTATTGAAGTCCA+CGG | 0.651123 | 4_1:+2227632 | Msa0529060:CDS |
| TACGGGAAGAGGATAGTCCA+TGG | 0.659102 | 4_1:+2226359 | Msa0529060:CDS |
| ACTCGAAATTGAGGTCCAAG+AGG | 0.683963 | 4_1:+2226290 | Msa0529060:CDS |
| GAGGATAGTCCATGGCAGAG+TGG | 0.688866 | 4_1:+2226367 | Msa0529060:CDS |
| ATGTCATGTCAGTAACGGGG+TGG | 0.692719 | 4_1:+2226182 | None:intergenic |
| TATATGTCATGTCAGTAACG+GGG | 0.747589 | 4_1:+2226179 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAATTACTAACAAAATA+AGG | - | chr4_1:2226537-2226556 | None:intergenic | 10.0% |
| !!! | TATTTTGTTAGTAATTTTAT+TGG | + | chr4_1:2226537-2226556 | Msa0529060:intron | 10.0% |
| !!! | ATTTTGTTAGTAATTTTATT+GGG | + | chr4_1:2226538-2226557 | Msa0529060:intron | 10.0% |
| !!! | TAAAAAAAAATATTTTACAG+GGG | - | chr4_1:2226608-2226627 | None:intergenic | 10.0% |
| !!! | GAAAAAATTAATATTTTACA+GGG | - | chr4_1:2226636-2226655 | None:intergenic | 10.0% |
| !!! | TGAAAAAATTAATATTTTAC+AGG | - | chr4_1:2226637-2226656 | None:intergenic | 10.0% |
| !!! | AAATCAAAAAAATATTTTAC+AGG | + | chr4_1:2226772-2226791 | Msa0529060:intron | 10.0% |
| !!! | AATCAAAAAAATATTTTACA+GGG | + | chr4_1:2226773-2226792 | Msa0529060:intron | 10.0% |
| !! | AGAATTAAAAAAATAAATGA+AGG | + | chr4_1:2230025-2230044 | Msa0529060:intron | 10.0% |
| !! | GAATTAAAAAAATAAATGAA+GGG | + | chr4_1:2230026-2230045 | Msa0529060:intron | 10.0% |
| !!! | TGGAAAAAAAAAACTTTTAT+AGG | + | chr4_1:2226744-2226763 | Msa0529060:intron | 15.0% |
| !!! | GGAAAAAAAAAACTTTTATA+GGG | + | chr4_1:2226745-2226764 | Msa0529060:intron | 15.0% |
| !!! | ATCAAAAAAATATTTTACAG+GGG | + | chr4_1:2226774-2226793 | Msa0529060:intron | 15.0% |
| !! | TATTTAAATTACAAACAGTT+TGG | - | chr4_1:2226928-2226947 | None:intergenic | 15.0% |
| !! | TTAAATAAATCTATACGAAA+AGG | - | chr4_1:2227214-2227233 | None:intergenic | 15.0% |
| !!! | TAACAAATTTTAGTTGTAAT+TGG | + | chr4_1:2227246-2227265 | Msa0529060:intron | 15.0% |
| !! | TATGTTAAATAATCTTCTAA+AGG | - | chr4_1:2227305-2227324 | None:intergenic | 15.0% |
| !! | TTAGAAGATTATTTAACATA+AGG | + | chr4_1:2227305-2227324 | Msa0529060:intron | 15.0% |
| !! | AAATTTCTATAAGTGATAAT+CGG | - | chr4_1:2227894-2227913 | None:intergenic | 15.0% |
| !!! | TAAAGTTAACATTTGTTAAA+GGG | - | chr4_1:2228144-2228163 | None:intergenic | 15.0% |
| !! | TTTAACAAATGTTAACTTTA+GGG | + | chr4_1:2228144-2228163 | Msa0529060:intron | 15.0% |
| !!! | AGGAATTTTTTTGTTTTATT+AGG | - | chr4_1:2231070-2231089 | None:intergenic | 15.0% |
| !! | ATAAAAATAAGTCATGAATA+AGG | - | chr4_1:2231589-2231608 | None:intergenic | 15.0% |
| !!! | AGTTTCTATTTGTGTTTTTT+TGG | - | chr4_1:2226273-2226292 | None:intergenic | 20.0% |
| !! | AAAATAAGGATAAAGGATAA+AGG | - | chr4_1:2226523-2226542 | None:intergenic | 20.0% |
| !! | TACTAACAAAATAAGGATAA+AGG | - | chr4_1:2226530-2226549 | None:intergenic | 20.0% |
| !!! | AAAAAAAAACTTTTATAGGG+TGG | + | chr4_1:2226748-2226767 | Msa0529060:intron | 20.0% |
| !! | TTCGTATAGATTTATTTAAG+TGG | + | chr4_1:2227215-2227234 | Msa0529060:intron | 20.0% |
| !! | AAGATTATTTAACATAAGGT+TGG | + | chr4_1:2227309-2227328 | Msa0529060:intron | 20.0% |
| !!! | GAATTGGAATTTTCATTTTA+AGG | + | chr4_1:2227420-2227439 | Msa0529060:intron | 20.0% |
| !!! | TTTTATACAACAAGTTTCTA+AGG | + | chr4_1:2227482-2227501 | Msa0529060:intron | 20.0% |
| !!! | TGTTAAGATATTTTAACACA+TGG | + | chr4_1:2227542-2227561 | Msa0529060:intron | 20.0% |
| !! | AAACTTGAAAATTTATACTG+TGG | - | chr4_1:2227663-2227682 | None:intergenic | 20.0% |
| !! | TCACTATATTTACATCTATT+TGG | - | chr4_1:2227952-2227971 | None:intergenic | 20.0% |
| !! | AAATAGATGTAAATATAGTG+AGG | + | chr4_1:2227951-2227970 | Msa0529060:intron | 20.0% |
| !!! | GAATTTTTATTTTGGTCTAA+AGG | - | chr4_1:2227989-2228008 | None:intergenic | 20.0% |
| !!! | CTACACAAGAATTTTTATTT+TGG | - | chr4_1:2227997-2228016 | None:intergenic | 20.0% |
| !!! | CTAAAGTTAACATTTGTTAA+AGG | - | chr4_1:2228145-2228164 | None:intergenic | 20.0% |
| !! | CTTTAACAAATGTTAACTTT+AGG | + | chr4_1:2228143-2228162 | Msa0529060:intron | 20.0% |
| !! | ATGATCACTAAACTATTATT+AGG | + | chr4_1:2230553-2230572 | Msa0529060:intron | 20.0% |
| !! | CTTGTTTCATTAAGAAAATA+AGG | - | chr4_1:2230617-2230636 | None:intergenic | 20.0% |
| !! | AAAAAAAACACAAAATTCGA+TGG | - | chr4_1:2231210-2231229 | None:intergenic | 20.0% |
| !! | ATGGTAAAAGTTACATTAAA+GGG | - | chr4_1:2231235-2231254 | None:intergenic | 20.0% |
| !! | TATGGTAAAAGTTACATTAA+AGG | - | chr4_1:2231236-2231255 | None:intergenic | 20.0% |
| ! | GAAAAGATAAAGAACAAGAT+TGG | - | chr4_1:2226404-2226423 | None:intergenic | 25.0% |
| !! | TTTTGTATGATCTATTAGGT+GGG | - | chr4_1:2226665-2226684 | None:intergenic | 25.0% |
| !! | TTTTTGTATGATCTATTAGG+TGG | - | chr4_1:2226666-2226685 | None:intergenic | 25.0% |
| ! | ACCTAATAGATCATACAAAA+AGG | + | chr4_1:2226665-2226684 | Msa0529060:intron | 25.0% |
| !! | TCCTTTTTGTATGATCTATT+AGG | - | chr4_1:2226669-2226688 | None:intergenic | 25.0% |
| ! | ATGGAAATAACCTATATTAC+AGG | + | chr4_1:2226803-2226822 | Msa0529060:intron | 25.0% |
| ! | TGGAAATAACCTATATTACA+GGG | + | chr4_1:2226804-2226823 | Msa0529060:intron | 25.0% |
| ! | GTGTATAAAATTAGGGTTAA+CGG | - | chr4_1:2226838-2226857 | None:intergenic | 25.0% |
| !!! | CAGTTTGGTGTATAAAATTA+GGG | - | chr4_1:2226845-2226864 | None:intergenic | 25.0% |
| !!! | TCAGTTTGGTGTATAAAATT+AGG | - | chr4_1:2226846-2226865 | None:intergenic | 25.0% |
| ! | AATTACAAACAGTTTGGATT+TGG | - | chr4_1:2226922-2226941 | None:intergenic | 25.0% |
| ! | TAATTTAAATACGTTCGACA+AGG | + | chr4_1:2226937-2226956 | Msa0529060:intron | 25.0% |
| ! | GAAAATAGTTCTTCTAAATC+TGG | + | chr4_1:2227062-2227081 | Msa0529060:intron | 25.0% |
| ! | GTATCCTTATGGAATTAATA+CGG | + | chr4_1:2227272-2227291 | Msa0529060:intron | 25.0% |
| ! | TCTTATGTTGCAAATATAAC+AGG | + | chr4_1:2227361-2227380 | Msa0529060:intron | 25.0% |
| !!! | CTTTCATTTTCTGAAATGAA+AGG | + | chr4_1:2227456-2227475 | Msa0529060:intron | 25.0% |
| ! | ATTAAACTCAAGAACTTGAA+TGG | - | chr4_1:2227607-2227626 | None:intergenic | 25.0% |
| ! | ATAACAAATTATTGAGTGAC+AGG | + | chr4_1:2227691-2227710 | Msa0529060:CDS | 25.0% |
| !! | CTTATAGAAATTTTGCTACT+AGG | + | chr4_1:2227901-2227920 | Msa0529060:intron | 25.0% |
| !! | AGAGGTTTTTGAACATAAAT+AGG | + | chr4_1:2229133-2229152 | Msa0529060:intron | 25.0% |
| !!! | GTTTTCTAAGAAAAATGTCA+TGG | - | chr4_1:2229417-2229436 | None:intergenic | 25.0% |
| ! | ATTGCAGATTCATATAACTA+TGG | + | chr4_1:2229522-2229541 | Msa0529060:intron | 25.0% |
| !!! | TTTTCAGGTTATGATTTCTA+TGG | - | chr4_1:2229745-2229764 | None:intergenic | 25.0% |
| !! | TCAATGATTTGGAAAATGAA+AGG | + | chr4_1:2229885-2229904 | Msa0529060:intron | 25.0% |
| !! | AGTTATTGTTGTTACAAAAG+CGG | + | chr4_1:2230000-2230019 | Msa0529060:intron | 25.0% |
| ! | TTAGGTATACATTATCAACT+AGG | + | chr4_1:2230087-2230106 | Msa0529060:intron | 25.0% |
| ! | TCTTTACAATTCAAAGTCAA+AGG | + | chr4_1:2230216-2230235 | Msa0529060:intron | 25.0% |
| ! | TAACAACACTAGTAATAGAT+TGG | + | chr4_1:2230387-2230406 | Msa0529060:intron | 25.0% |
| !!! | ATAGATTACCTTTTGTTGTA+AGG | + | chr4_1:2230582-2230601 | Msa0529060:intron | 25.0% |
| ! | TGTATTAACAAAATTTCAGG+AGG | - | chr4_1:2231090-2231109 | None:intergenic | 25.0% |
| ! | TGGTGTATTAACAAAATTTC+AGG | - | chr4_1:2231093-2231112 | None:intergenic | 25.0% |
| ! | GTACAAAGAATGAATAACAA+TGG | - | chr4_1:2231556-2231575 | None:intergenic | 25.0% |
| CAAATAGAAACTCGAAATTG+AGG | + | chr4_1:2226281-2226300 | Msa0529060:CDS | 30.0% | |
| ! | GTGTTTTATCCCTGTAATAT+AGG | + | chr4_1:2226567-2226586 | Msa0529060:intron | 30.0% |
| ! | TGGTTTTTGTATGACCTATT+AGG | + | chr4_1:2226714-2226733 | Msa0529060:intron | 30.0% |
| ! | GGTTTTTGTATGACCTATTA+GGG | + | chr4_1:2226715-2226734 | Msa0529060:intron | 30.0% |
| ! | GTTTTTGTATGACCTATTAG+GGG | + | chr4_1:2226716-2226735 | Msa0529060:intron | 30.0% |
| ! | TATTTTACAGGGGATAAACA+TGG | + | chr4_1:2226784-2226803 | Msa0529060:intron | 30.0% |
| GGAAATAACCTATATTACAG+GGG | + | chr4_1:2226805-2226824 | Msa0529060:intron | 30.0% | |
| ATCATTTGAGTCCATGAATA+TGG | - | chr4_1:2226994-2227013 | None:intergenic | 30.0% | |
| TCAAATGTTTAGTAATCGCA+AGG | - | chr4_1:2227176-2227195 | None:intergenic | 30.0% | |
| !! | GTAATTGGTTTGTATCCTTA+TGG | + | chr4_1:2227261-2227280 | Msa0529060:intron | 30.0% |
| ATCACCGTATTAATTCCATA+AGG | - | chr4_1:2227279-2227298 | None:intergenic | 30.0% | |
| TAAATTTGTGCAGTTCTGTA+AGG | + | chr4_1:2227395-2227414 | Msa0529060:intron | 30.0% | |
| !! | ATACAACAAGTTTCTAAGGT+AGG | + | chr4_1:2227486-2227505 | Msa0529060:intron | 30.0% |
| AAAGTCAAAACAACGTGAAA+AGG | - | chr4_1:2227522-2227541 | None:intergenic | 30.0% | |
| !! | TCTTTTTCATTCACAAATGC+AGG | + | chr4_1:2227566-2227585 | Msa0529060:intron | 30.0% |
| TTGAATGGTAAGAAGAGATA+TGG | - | chr4_1:2227592-2227611 | None:intergenic | 30.0% | |
| TCAAGTTCTTGAGTTTAATG+CGG | + | chr4_1:2227608-2227627 | Msa0529060:CDS | 30.0% | |
| ATGATTTCTAACGATATACG+AGG | + | chr4_1:2228436-2228455 | Msa0529060:intron | 30.0% | |
| TGATTTCTAACGATATACGA+GGG | + | chr4_1:2228437-2228456 | Msa0529060:intron | 30.0% | |
| TCTTTGTAAGAAAGATTCCT+TGG | + | chr4_1:2228591-2228610 | Msa0529060:intron | 30.0% | |
| TATACATAGTGAATTGAGAC+TGG | + | chr4_1:2228636-2228655 | Msa0529060:intron | 30.0% | |
| ATACATAGTGAATTGAGACT+GGG | + | chr4_1:2228637-2228656 | Msa0529060:intron | 30.0% | |
| GTTGAGAAAATGGTATTTGA+TGG | + | chr4_1:2228750-2228769 | Msa0529060:intron | 30.0% | |
| !!! | AAACTGGTTTTGAATGAACA+AGG | + | chr4_1:2228862-2228881 | Msa0529060:intron | 30.0% |
| !!! | AACTGGTTTTGAATGAACAA+GGG | + | chr4_1:2228863-2228882 | Msa0529060:intron | 30.0% |
| TTATGTTCAAAAACCTCTCT+AGG | - | chr4_1:2229131-2229150 | None:intergenic | 30.0% | |
| GAACATAAATAGGCTCAAAT+TGG | + | chr4_1:2229143-2229162 | Msa0529060:intron | 30.0% | |
| TAAACACCAGATACCATATT+GGG | + | chr4_1:2229837-2229856 | Msa0529060:intron | 30.0% | |
| GTGACAACTCTTAACAAAAT+AGG | + | chr4_1:2229947-2229966 | Msa0529060:intron | 30.0% | |
| CTCTTAACAAAATAGGAAAG+AGG | + | chr4_1:2229954-2229973 | Msa0529060:intron | 30.0% | |
| TGTATTAGAGTAGTTATACC+TGG | - | chr4_1:2230056-2230075 | None:intergenic | 30.0% | |
| GTATAACTACTCTAATACAC+TGG | + | chr4_1:2230057-2230076 | Msa0529060:intron | 30.0% | |
| TGCTGTGATAAAGAATGATA+TGG | + | chr4_1:2230160-2230179 | Msa0529060:intron | 30.0% | |
| TAGTCAAAGTAGAAGAAAGA+TGG | + | chr4_1:2230189-2230208 | Msa0529060:intron | 30.0% | |
| AATGATTCAGAACTTTGACA+AGG | - | chr4_1:2230255-2230274 | None:intergenic | 30.0% | |
| !! | TCAAAGTTCTGAATCATTCA+TGG | + | chr4_1:2230257-2230276 | Msa0529060:intron | 30.0% |
| !! | CAAAGTTCTGAATCATTCAT+GGG | + | chr4_1:2230258-2230277 | Msa0529060:intron | 30.0% |
| ! | TAGTGTTGTTAAATGTGCTT+TGG | - | chr4_1:2230378-2230397 | None:intergenic | 30.0% |
| ! | ATTATTTAGGGAGTATGTGA+AGG | - | chr4_1:2230995-2231014 | None:intergenic | 30.0% |
| TAAACAACTTCTTCCAAAAG+AGG | - | chr4_1:2231360-2231379 | None:intergenic | 30.0% | |
| TTGGAAGAAGTTGTTTATAG+AGG | + | chr4_1:2231363-2231382 | Msa0529060:CDS | 30.0% | |
| TTTGTACAACTGTTCATCAT+TGG | + | chr4_1:2231483-2231502 | Msa0529060:CDS | 30.0% | |
| TTGTACAACTGTTCATCATT+GGG | + | chr4_1:2231484-2231503 | Msa0529060:CDS | 30.0% | |
| AATTTCCCACTCAACTTGAT+AGG | + | chr4_1:2226224-2226243 | Msa0529060:CDS | 35.0% | |
| ! | CTTGTTCTTTCCTTTTGCAA+TGG | - | chr4_1:2226318-2226337 | None:intergenic | 35.0% |
| ! | CTTCCTTTTACTCAGTGTTA+CGG | + | chr4_1:2226341-2226360 | Msa0529060:CDS | 35.0% |
| ! | TTCCTTTTACTCAGTGTTAC+GGG | + | chr4_1:2226342-2226361 | Msa0529060:CDS | 35.0% |
| CGGAAATGACCTATATTACA+GGG | - | chr4_1:2226579-2226598 | None:intergenic | 35.0% | |
| CCTGTAATATAGGTCATTTC+CGG | + | chr4_1:2226577-2226596 | Msa0529060:intron | 35.0% | |
| CTGTAATATAGGTCATTTCC+GGG | + | chr4_1:2226578-2226597 | Msa0529060:intron | 35.0% | |
| ! | ATATTTTACAGGGGTAAACC+CGG | - | chr4_1:2226599-2226618 | None:intergenic | 35.0% |
| ! | GTGTTTTACCCCTGTAATAT+AGG | - | chr4_1:2226816-2226835 | None:intergenic | 35.0% |
| ! | GTCTCTTTTGCTAATCAGTT+TGG | - | chr4_1:2226860-2226879 | None:intergenic | 35.0% |
| AACAAACAGCATGAGAGAAA+TGG | + | chr4_1:2226885-2226904 | Msa0529060:intron | 35.0% | |
| TTTGAGTCCATGAATATGGA+AGG | - | chr4_1:2226990-2227009 | None:intergenic | 35.0% | |
| ACACCTTAAGTGGGAATAAA+TGG | + | chr4_1:2227110-2227129 | Msa0529060:intron | 35.0% | |
| CACCTTAAGTGGGAATAAAT+GGG | + | chr4_1:2227111-2227130 | Msa0529060:intron | 35.0% | |
| TTCCCATTTATTCCCACTTA+AGG | - | chr4_1:2227116-2227135 | None:intergenic | 35.0% | |
| GGGAATAAATGGGAAATATG+AGG | + | chr4_1:2227121-2227140 | Msa0529060:intron | 35.0% | |
| ATGTTGCAAATATAACAGGC+TGG | + | chr4_1:2227365-2227384 | Msa0529060:intron | 35.0% | |
| AATTATTGAGTGACAGGAAC+TGG | + | chr4_1:2227697-2227716 | Msa0529060:CDS | 35.0% | |
| ! | ATTTGGGTTTATTGCTCTTC+TGG | + | chr4_1:2227740-2227759 | Msa0529060:CDS | 35.0% |
| !! | TGACAGATTACTTGGCTTTA+AGG | + | chr4_1:2227785-2227804 | Msa0529060:CDS | 35.0% |
| !!! | CTACTAGGTGTTTTAGAAGT+GGG | + | chr4_1:2227916-2227935 | Msa0529060:intron | 35.0% |
| CTATAATTGCCGAACTTTCT+TGG | + | chr4_1:2228093-2228112 | Msa0529060:intron | 35.0% | |
| ACCATTCTACCAAGAAAGTT+CGG | - | chr4_1:2228105-2228124 | None:intergenic | 35.0% | |
| AGAATGGTACATCAGTTCAT+AGG | + | chr4_1:2228117-2228136 | Msa0529060:intron | 35.0% | |
| !! | TGTTAACTTTAGGGTGTGTT+TGG | + | chr4_1:2228153-2228172 | Msa0529060:intron | 35.0% |
| TGTGTTTGGATTGAGGATTT+AGG | + | chr4_1:2228167-2228186 | Msa0529060:intron | 35.0% | |
| TTTGGATTGAGGATTTAGGA+GGG | + | chr4_1:2228171-2228190 | Msa0529060:intron | 35.0% | |
| ! | TAAATCCTTAAGGGTGTGTT+TGG | - | chr4_1:2228389-2228408 | None:intergenic | 35.0% |
| AACACACCCTTAAGGATTTA+TGG | + | chr4_1:2228389-2228408 | Msa0529060:intron | 35.0% | |
| CACACTCCATAAATCCTTAA+GGG | - | chr4_1:2228398-2228417 | None:intergenic | 35.0% | |
| CTTAAGGATTTATGGAGTGT+GGG | + | chr4_1:2228397-2228416 | Msa0529060:intron | 35.0% | |
| !! | CAAAAGGTTTAAGTTGGATG+TGG | + | chr4_1:2228463-2228482 | Msa0529060:intron | 35.0% |
| GTATAAGTGAGAAAACTGTG+AGG | + | chr4_1:2228485-2228504 | Msa0529060:intron | 35.0% | |
| ACAAAGCTCTTAGTTGTGAT+AGG | + | chr4_1:2228534-2228553 | Msa0529060:intron | 35.0% | |
| TGTAAGAAAGATTCCTTGGT+TGG | + | chr4_1:2228595-2228614 | Msa0529060:intron | 35.0% | |
| AATTGCATGTAAACCAACCA+AGG | - | chr4_1:2228611-2228630 | None:intergenic | 35.0% | |
| TTGAAGAAGAATGTTCAGAC+TGG | + | chr4_1:2228711-2228730 | Msa0529060:intron | 35.0% | |
| GTGTATGACAGTTGAGAAAA+TGG | + | chr4_1:2228740-2228759 | Msa0529060:intron | 35.0% | |
| TTCTTTACCTTTCCAAGTCA+AGG | + | chr4_1:2228776-2228795 | Msa0529060:intron | 35.0% | |
| TCTTTACCTTTCCAAGTCAA+GGG | + | chr4_1:2228777-2228796 | Msa0529060:intron | 35.0% | |
| TCGATTTACGTGTGTATGTT+TGG | + | chr4_1:2228825-2228844 | Msa0529060:intron | 35.0% | |
| !!! | ACTGGTTTTGAATGAACAAG+GGG | + | chr4_1:2228864-2228883 | Msa0529060:intron | 35.0% |
| ATAACTGAAGCAAACTGTTG+TGG | + | chr4_1:2229003-2229022 | Msa0529060:intron | 35.0% | |
| ATTGAGACAGATATGAACCA+GGG | + | chr4_1:2229092-2229111 | Msa0529060:intron | 35.0% | |
| CAATTCAAATGAGGTCATGA+TGG | - | chr4_1:2229253-2229272 | None:intergenic | 35.0% | |
| CATCATGACCTCATTTGAAT+TGG | + | chr4_1:2229251-2229270 | Msa0529060:intron | 35.0% | |
| !! | GAGTAAGAAAGATTAGCTTG+AGG | + | chr4_1:2229315-2229334 | Msa0529060:intron | 35.0% |
| TTCTCTCATTAGTTGCTAGT+TGG | - | chr4_1:2229502-2229521 | None:intergenic | 35.0% | |
| CATTTGAATGCGATCTTTGA+AGG | - | chr4_1:2229552-2229571 | None:intergenic | 35.0% | |
| TTATGCATCTTCACTTACGT+TGG | + | chr4_1:2229686-2229705 | Msa0529060:intron | 35.0% | |
| TATGCATCTTCACTTACGTT+GGG | + | chr4_1:2229687-2229706 | Msa0529060:intron | 35.0% | |
| ! | ATCATAACCTGAAAAGTGTG+TGG | + | chr4_1:2229750-2229769 | Msa0529060:intron | 35.0% |
| TTCTACAGAAGTCATTCCTA+AGG | + | chr4_1:2229807-2229826 | Msa0529060:intron | 35.0% | |
| !! | TGGTGTTTAGTTTGATCCTT+AGG | - | chr4_1:2229826-2229845 | None:intergenic | 35.0% |
| CTAAACACCAGATACCATAT+TGG | + | chr4_1:2229836-2229855 | Msa0529060:intron | 35.0% | |
| AGATATCCCAATATGGTATC+TGG | - | chr4_1:2229846-2229865 | None:intergenic | 35.0% | |
| AGATACCATATTGGGATATC+TGG | + | chr4_1:2229845-2229864 | Msa0529060:intron | 35.0% | |
| ACTGAAAGCTCTCAATGATT+TGG | + | chr4_1:2229874-2229893 | Msa0529060:intron | 35.0% | |
| AAATAAATGAAGGGATTGCC+AGG | + | chr4_1:2230035-2230054 | Msa0529060:intron | 35.0% | |
| TAATACACTGGCATGCAATT+AGG | + | chr4_1:2230069-2230088 | Msa0529060:intron | 35.0% | |
| CATACTCAGTCATACATGTT+TGG | + | chr4_1:2230701-2230720 | Msa0529060:intron | 35.0% | |
| CAGTCATACATGTTTGGTAA+AGG | + | chr4_1:2230707-2230726 | Msa0529060:intron | 35.0% | |
| !!! | TGTTGGACGTTAGTTTTCTT+AGG | - | chr4_1:2230908-2230927 | None:intergenic | 35.0% |
| AGCATTATAAGTTTCATCCC+TGG | + | chr4_1:2231037-2231056 | Msa0529060:intron | 35.0% | |
| ATAAGTTTCATCCCTGGATA+CGG | + | chr4_1:2231043-2231062 | Msa0529060:intron | 35.0% | |
| ! | TTTTATTAGGACCGTATCCA+GGG | - | chr4_1:2231057-2231076 | None:intergenic | 35.0% |
| TGTTAGCAATCCAACATTGA+AGG | + | chr4_1:2231272-2231291 | Msa0529060:CDS | 35.0% | |
| TTGAGATATCACTGTTTAGG+AGG | - | chr4_1:2231302-2231321 | None:intergenic | 35.0% | |
| CTCTTGAGATATCACTGTTT+AGG | - | chr4_1:2231305-2231324 | None:intergenic | 35.0% | |
| !! | ACCAACCTATCAAGTTGAGT+GGG | - | chr4_1:2226232-2226251 | None:intergenic | 40.0% |
| !! | TACCAACCTATCAAGTTGAG+TGG | - | chr4_1:2226233-2226252 | None:intergenic | 40.0% |
| TTCCCGTAACACTGAGTAAA+AGG | - | chr4_1:2226347-2226366 | None:intergenic | 40.0% | |
| AGAATCCACCAAAACTGAGA+GGG | - | chr4_1:2226438-2226457 | None:intergenic | 40.0% | |
| CCGGAAATGACCTATATTAC+AGG | - | chr4_1:2226580-2226599 | None:intergenic | 40.0% | |
| ! | TTTTCCAGAACACCCCTAAT+AGG | - | chr4_1:2226731-2226750 | None:intergenic | 40.0% |
| CATGAGAGAAATGGTTGAAG+AGG | + | chr4_1:2226894-2226913 | Msa0529060:intron | 40.0% | |
| GTTCTTCTAAATCTGGTCAG+TGG | + | chr4_1:2227069-2227088 | Msa0529060:intron | 40.0% | |
| ATAGACTCACACACCTTAAG+TGG | + | chr4_1:2227100-2227119 | Msa0529060:intron | 40.0% | |
| TAGACTCACACACCTTAAGT+GGG | + | chr4_1:2227101-2227120 | Msa0529060:intron | 40.0% | |
| AAGACTGCTTACAGTAGATG+TGG | - | chr4_1:2227345-2227364 | None:intergenic | 40.0% | |
| GCAGTTCTGTAAGGTTGAAT+TGG | + | chr4_1:2227404-2227423 | Msa0529060:intron | 40.0% | |
| TCTGGTTGTATTGAAGTCCA+CGG | + | chr4_1:2227632-2227651 | Msa0529060:CDS | 40.0% | |
| TTTATACTGTGGTTTAGCCG+TGG | - | chr4_1:2227652-2227671 | None:intergenic | 40.0% | |
| ! | TGGTTTTTGTCATCAGCTCT+GGG | + | chr4_1:2227717-2227736 | Msa0529060:CDS | 40.0% |
| ! | CTACTTGCTGACAGATTACT+TGG | + | chr4_1:2227777-2227796 | Msa0529060:CDS | 40.0% |
| !!! | GCTACTAGGTGTTTTAGAAG+TGG | + | chr4_1:2227915-2227934 | Msa0529060:intron | 40.0% |
| AGAAGAACAGCTTATCAGTC+TGG | + | chr4_1:2228015-2228034 | Msa0529060:intron | 40.0% | |
| GAAGAACAGCTTATCAGTCT+GGG | + | chr4_1:2228016-2228035 | Msa0529060:intron | 40.0% | |
| !! | CAAAGAAGTATTTACCCCCA+TGG | - | chr4_1:2228049-2228068 | None:intergenic | 40.0% |
| GGGGGTAAATACTTCTTTGA+TGG | + | chr4_1:2228050-2228069 | Msa0529060:intron | 40.0% | |
| GTTCGGCAATTATAGCAATG+AGG | - | chr4_1:2228088-2228107 | None:intergenic | 40.0% | |
| ! | TTTAGGGTGTGTTTGGATTG+AGG | + | chr4_1:2228160-2228179 | Msa0529060:intron | 40.0% |
| GTTTGGATTGAGGATTTAGG+AGG | + | chr4_1:2228170-2228189 | Msa0529060:intron | 40.0% | |
| TTGGATTGAGGATTTAGGAG+GGG | + | chr4_1:2228172-2228191 | Msa0529060:intron | 40.0% | |
| CCACACTCCATAAATCCTTA+AGG | - | chr4_1:2228399-2228418 | None:intergenic | 40.0% | |
| CCTTAAGGATTTATGGAGTG+TGG | + | chr4_1:2228396-2228415 | Msa0529060:intron | 40.0% | |
| GGGAGACAAAAGGTTTAAGT+TGG | + | chr4_1:2228457-2228476 | Msa0529060:intron | 40.0% | |
| CTTAGTTGTGATAGGCTAAG+AGG | + | chr4_1:2228542-2228561 | Msa0529060:intron | 40.0% | |
| ! | AGGAGATCAGTGTAGTTTGT+AGG | + | chr4_1:2228562-2228581 | Msa0529060:intron | 40.0% |
| ! | GGAGATCAGTGTAGTTTGTA+GGG | + | chr4_1:2228563-2228582 | Msa0529060:intron | 40.0% |
| ! | ACATTTAGCTTCCCTTGACT+TGG | - | chr4_1:2228791-2228810 | None:intergenic | 40.0% |
| GGATGAGCATTTGTCAAAAC+TGG | + | chr4_1:2228846-2228865 | Msa0529060:intron | 40.0% | |
| ATGTGGTGACAACATAACGT+AGG | + | chr4_1:2228915-2228934 | Msa0529060:intron | 40.0% | |
| TGTTACTCTACGTATCAGTC+TGG | - | chr4_1:2229048-2229067 | None:intergenic | 40.0% | |
| CTGGTTCATATCTGTCTCAA+TGG | - | chr4_1:2229093-2229112 | None:intergenic | 40.0% | |
| CATTGAGACAGATATGAACC+AGG | + | chr4_1:2229091-2229110 | Msa0529060:intron | 40.0% | |
| TTGAGACAGATATGAACCAG+GGG | + | chr4_1:2229093-2229112 | Msa0529060:intron | 40.0% | |
| TGTCAGGTTTGTAAAGAGTC+TGG | - | chr4_1:2229193-2229212 | None:intergenic | 40.0% | |
| CGCATTCAAATGCTCTTTCA+TGG | + | chr4_1:2229560-2229579 | Msa0529060:intron | 40.0% | |
| GAGTTTCTTCTTTGGATCCA+AGG | - | chr4_1:2229623-2229642 | None:intergenic | 40.0% | |
| GATCCAAAGAAGAAACTCAG+AGG | + | chr4_1:2229625-2229644 | Msa0529060:intron | 40.0% | |
| ATGCATCTTCACTTACGTTG+GGG | + | chr4_1:2229688-2229707 | Msa0529060:intron | 40.0% | |
| ! | TTCTTCTTTTACCACTGCTC+TGG | - | chr4_1:2229721-2229740 | None:intergenic | 40.0% |
| ! | ATAACCTGAAAAGTGTGTGG+TGG | + | chr4_1:2229753-2229772 | Msa0529060:intron | 40.0% |
| TCACTCCAGATATCCCAATA+TGG | - | chr4_1:2229853-2229872 | None:intergenic | 40.0% | |
| AGGAAAGAGGAACTAACTGA+AGG | + | chr4_1:2229967-2229986 | Msa0529060:intron | 40.0% | |
| TCAAAGTCAAAGGAAGCTCA+AGG | + | chr4_1:2230226-2230245 | Msa0529060:intron | 40.0% | |
| ! | ACTAGGTAGGCTTTTAAGCA+AGG | - | chr4_1:2230289-2230308 | None:intergenic | 40.0% |
| AAAGAGTCGAAGCTTCTTCA+AGG | + | chr4_1:2230338-2230357 | Msa0529060:intron | 40.0% | |
| AAGAGTCGAAGCTTCTTCAA+GGG | + | chr4_1:2230339-2230358 | Msa0529060:intron | 40.0% | |
| ATGTGCTTTGGTAAAGCCTA+GGG | - | chr4_1:2230366-2230385 | None:intergenic | 40.0% | |
| AATGTGCTTTGGTAAAGCCT+AGG | - | chr4_1:2230367-2230386 | None:intergenic | 40.0% | |
| TCGCTAGCTGTAGCAATATT+GGG | - | chr4_1:2230446-2230465 | None:intergenic | 40.0% | |
| TTCGCTAGCTGTAGCAATAT+TGG | - | chr4_1:2230447-2230466 | None:intergenic | 40.0% | |
| TAGCAGCTCCTTACAACAAA+AGG | - | chr4_1:2230593-2230612 | None:intergenic | 40.0% | |
| GAAGGATCATGAGAGTTTGT+TGG | - | chr4_1:2230925-2230944 | None:intergenic | 40.0% | |
| ATGAGAGTGAGAGTTTGTGA+AGG | - | chr4_1:2230943-2230962 | None:intergenic | 40.0% | |
| ATGAGAGTGAGAGTTTGTGA+AGG | - | chr4_1:2230943-2230962 | None:intergenic | 40.0% | |
| !! | GTTTTATTAGGACCGTATCC+AGG | - | chr4_1:2231058-2231077 | None:intergenic | 40.0% |
| AATAACTACACACAGTCACG+AGG | - | chr4_1:2231121-2231140 | None:intergenic | 40.0% | |
| CGTGACTGTGTGTAGTTATT+CGG | + | chr4_1:2231121-2231140 | Msa0529060:intron | 40.0% | |
| TTCAGTGCAATTCACTTCTC+TGG | + | chr4_1:2231453-2231472 | Msa0529060:CDS | 40.0% | |
| CAAATTTCCAGTCCAGCAAT+AGG | - | chr4_1:2231526-2231545 | None:intergenic | 40.0% | |
| TCCCACTCAACTTGATAGGT+TGG | + | chr4_1:2226228-2226247 | Msa0529060:CDS | 45.0% | |
| ACTCGAAATTGAGGTCCAAG+AGG | + | chr4_1:2226290-2226309 | Msa0529060:CDS | 45.0% | |
| TTACTCAGTGTTACGGGAAG+AGG | + | chr4_1:2226348-2226367 | Msa0529060:CDS | 45.0% | |
| ! | CTTCACATCCCTCTCAGTTT+TGG | + | chr4_1:2226427-2226446 | Msa0529060:intron | 45.0% |
| GAGAATCCACCAAAACTGAG+AGG | - | chr4_1:2226439-2226458 | None:intergenic | 45.0% | |
| TGAGTTTGTGGGTGAAGAAG+AGG | - | chr4_1:2226490-2226509 | None:intergenic | 45.0% | |
| TCTTCTTCACCCACAAACTC+AGG | + | chr4_1:2226489-2226508 | Msa0529060:intron | 45.0% | |
| GTGACGTTACCTGAGTTTGT+GGG | - | chr4_1:2226501-2226520 | None:intergenic | 45.0% | |
| !! | ATGACCTATTAGGGGTGTTC+TGG | + | chr4_1:2226724-2226743 | Msa0529060:intron | 45.0% |
| GACGTCACCTTCCATATTCA+TGG | + | chr4_1:2226980-2226999 | Msa0529060:intron | 45.0% | |
| TCTTGAGTTTAATGCGGCTC+TGG | + | chr4_1:2227614-2227633 | Msa0529060:CDS | 45.0% | |
| !! | CTGGTTTTTGTCATCAGCTC+TGG | + | chr4_1:2227716-2227735 | Msa0529060:CDS | 45.0% |
| !! | TTGTCATCAGCTCTGGGATT+TGG | + | chr4_1:2227723-2227742 | Msa0529060:CDS | 45.0% |
| !! | TGTCATCAGCTCTGGGATTT+GGG | + | chr4_1:2227724-2227743 | Msa0529060:CDS | 45.0% |
| GCCGAACTTTCTTGGTAGAA+TGG | + | chr4_1:2228101-2228120 | Msa0529060:intron | 45.0% | |
| ATTGAGGATTTAGGAGGGGA+AGG | + | chr4_1:2228176-2228195 | Msa0529060:intron | 45.0% | |
| TTGAGGATTTAGGAGGGGAA+GGG | + | chr4_1:2228177-2228196 | Msa0529060:intron | 45.0% | |
| TTTGGATGGAGGGTTTAGGA+GGG | - | chr4_1:2228371-2228390 | None:intergenic | 45.0% | |
| TGTGTTTGGATGGAGGGTTT+AGG | - | chr4_1:2228375-2228394 | None:intergenic | 45.0% | |
| ! | TAAGGGTGTGTTTGGATGGA+GGG | - | chr4_1:2228381-2228400 | None:intergenic | 45.0% |
| ! | TTAAGGGTGTGTTTGGATGG+AGG | - | chr4_1:2228382-2228401 | None:intergenic | 45.0% |
| TCCATCCAAACACACCCTTA+AGG | + | chr4_1:2228381-2228400 | Msa0529060:intron | 45.0% | |
| ! | TCCTTAAGGGTGTGTTTGGA+TGG | - | chr4_1:2228385-2228404 | None:intergenic | 45.0% |
| CGATATACGAGGGAGACAAA+AGG | + | chr4_1:2228447-2228466 | Msa0529060:intron | 45.0% | |
| GAGAAAACTGTGAGGTTGAC+TGG | + | chr4_1:2228493-2228512 | Msa0529060:intron | 45.0% | |
| AAAACTGTGAGGTTGACTGG+CGG | + | chr4_1:2228496-2228515 | Msa0529060:intron | 45.0% | |
| ! | ACTATCTAGGATGGCATGCT+TGG | + | chr4_1:2228666-2228685 | Msa0529060:intron | 45.0% |
| !! | TAGCTTCCCTTGACTTGGAA+AGG | - | chr4_1:2228786-2228805 | None:intergenic | 45.0% |
| GACAACATAACGTAGGCATG+AGG | + | chr4_1:2228922-2228941 | Msa0529060:intron | 45.0% | |
| AACATAACGTAGGCATGAGG+TGG | + | chr4_1:2228925-2228944 | Msa0529060:intron | 45.0% | |
| ACTGAAGCAAACTGTTGTGG+AGG | + | chr4_1:2229006-2229025 | Msa0529060:intron | 45.0% | |
| AGAGTAACATTTCTTCCCCG+AGG | + | chr4_1:2229059-2229078 | Msa0529060:intron | 45.0% | |
| GAGTAACATTTCTTCCCCGA+GGG | + | chr4_1:2229060-2229079 | Msa0529060:intron | 45.0% | |
| AGTAACATTTCTTCCCCGAG+GGG | + | chr4_1:2229061-2229080 | Msa0529060:intron | 45.0% | |
| ! | TCTCAATGGTTTTCTCCCCT+CGG | - | chr4_1:2229079-2229098 | None:intergenic | 45.0% |
| ! | TTGCAGCTTTAGTGAGTGTC+AGG | - | chr4_1:2229209-2229228 | None:intergenic | 45.0% |
| TGACACTCACTAAAGCTGCA+AGG | + | chr4_1:2229208-2229227 | Msa0529060:intron | 45.0% | |
| CACTAAAGCTGCAAGGTCAA+CGG | + | chr4_1:2229215-2229234 | Msa0529060:intron | 45.0% | |
| TGATCGGGCCAATTCAAATG+AGG | - | chr4_1:2229262-2229281 | None:intergenic | 45.0% | |
| TGCTGACATACTCTGGTGAT+CGG | - | chr4_1:2229278-2229297 | None:intergenic | 45.0% | |
| AATCCTCTGCTGACATACTC+TGG | - | chr4_1:2229285-2229304 | None:intergenic | 45.0% | |
| TGGATTCTCTCGCGATAGAT+GGG | - | chr4_1:2229482-2229501 | None:intergenic | 45.0% | |
| TTGGATTCTCTCGCGATAGA+TGG | - | chr4_1:2229483-2229502 | None:intergenic | 45.0% | |
| ! | GTTGACTCTCTCAACATGGT+TGG | - | chr4_1:2229597-2229616 | None:intergenic | 45.0% |
| !! | GTTCGTTGACTCTCTCAACA+TGG | - | chr4_1:2229601-2229620 | None:intergenic | 45.0% |
| TTGAGAGAGTCAACGAACCT+TGG | + | chr4_1:2229603-2229622 | Msa0529060:intron | 45.0% | |
| GTGCCTCTGAGTTTCTTCTT+TGG | - | chr4_1:2229631-2229650 | None:intergenic | 45.0% | |
| GTATGCTTCCTAGTGTTCAG+TGG | + | chr4_1:2230137-2230156 | Msa0529060:intron | 45.0% | |
| ! | GCTTTTAGTGGCTACTAGGT+AGG | - | chr4_1:2230302-2230321 | None:intergenic | 45.0% |
| ! | CCATGCTTTTAGTGGCTACT+AGG | - | chr4_1:2230306-2230325 | None:intergenic | 45.0% |
| CCTAGTAGCCACTAAAAGCA+TGG | + | chr4_1:2230303-2230322 | Msa0529060:intron | 45.0% | |
| ! | ACGGGAAACCATGCTTTTAG+TGG | - | chr4_1:2230314-2230333 | None:intergenic | 45.0% |
| AAGCTTCGACTCTTTCGCTA+CGG | - | chr4_1:2230333-2230352 | None:intergenic | 45.0% | |
| AACTCGATGCTTGTGCAGAA+AGG | - | chr4_1:2230503-2230522 | None:intergenic | 45.0% | |
| CAGTCTGCAGCAATGCAATA+TGG | - | chr4_1:2231254-2231273 | None:intergenic | 45.0% | |
| AGGAGGATCTCCTTCAATGT+TGG | - | chr4_1:2231285-2231304 | None:intergenic | 45.0% | |
| ! | CTGCATTGTCACTCCTCTTT+TGG | + | chr4_1:2231344-2231363 | Msa0529060:CDS | 45.0% |
| !! | TACAGCTTGTTGCCACTTCA+TGG | - | chr4_1:2231415-2231434 | None:intergenic | 45.0% |
| TTCATCATTGGGTGTGTCCT+TGG | + | chr4_1:2231495-2231514 | Msa0529060:CDS | 45.0% | |
| !!! | ATAAAAAAAAATATTTTACA+GGG | - | chr4_1:2226609-2226628 | None:intergenic | 5.0% |
| !!! | AATAAAAAAAAATATTTTAC+AGG | - | chr4_1:2226610-2226629 | None:intergenic | 5.0% |
| !!! | TATTTTTTTTACAAAAATTT+TGG | + | chr4_1:2226694-2226713 | Msa0529060:intron | 5.0% |
| !! | ATAAAACAATATATTATTTA+GGG | - | chr4_1:2231007-2231026 | None:intergenic | 5.0% |
| !! | AATAAAACAATATATTATTT+AGG | - | chr4_1:2231008-2231027 | None:intergenic | 5.0% |
| !!! | AAATAATATATTGTTTTATT+TGG | + | chr4_1:2231008-2231027 | Msa0529060:intron | 5.0% |
| ! | CCTTTTGCAATGGCACCTCT+TGG | - | chr4_1:2226308-2226327 | None:intergenic | 50.0% |
| !! | CCAAGAGGTGCCATTGCAAA+AGG | + | chr4_1:2226305-2226324 | Msa0529060:CDS | 50.0% |
| TACGGGAAGAGGATAGTCCA+TGG | + | chr4_1:2226359-2226378 | Msa0529060:CDS | 50.0% | |
| CATACATCACCACTCTGCCA+TGG | - | chr4_1:2226379-2226398 | None:intergenic | 50.0% | |
| ! | CATGGCAGAGTGGTGATGTA+TGG | + | chr4_1:2226377-2226396 | Msa0529060:CDS | 50.0% |
| !! | CACATCCCTCTCAGTTTTGG+TGG | + | chr4_1:2226430-2226449 | Msa0529060:intron | 50.0% |
| TCCTGTGAAGAACGCAACGA+CGG | - | chr4_1:2226461-2226480 | None:intergenic | 50.0% | |
| GGTGACGTTACCTGAGTTTG+TGG | - | chr4_1:2226502-2226521 | None:intergenic | 50.0% | |
| GACACTCATATGCAGAGGTC+GGG | - | chr4_1:2227154-2227173 | None:intergenic | 50.0% | |
| GGACACTCATATGCAGAGGT+CGG | - | chr4_1:2227155-2227174 | None:intergenic | 50.0% | |
| GCAAGGACACTCATATGCAG+AGG | - | chr4_1:2227159-2227178 | None:intergenic | 50.0% | |
| TTTGGTCTAAAGGCGAGAGC+AGG | - | chr4_1:2227979-2227998 | None:intergenic | 50.0% | |
| ! | TCAGTCTGGGATGCAAACCA+TGG | + | chr4_1:2228029-2228048 | Msa0529060:intron | 50.0% |
| ! | CAGTCTGGGATGCAAACCAT+GGG | + | chr4_1:2228030-2228049 | Msa0529060:intron | 50.0% |
| ! | AGTCTGGGATGCAAACCATG+GGG | + | chr4_1:2228031-2228050 | Msa0529060:intron | 50.0% |
| TTGGATGGAGGGTTTAGGAG+GGG | - | chr4_1:2228370-2228389 | None:intergenic | 50.0% | |
| GTTTGGATGGAGGGTTTAGG+AGG | - | chr4_1:2228372-2228391 | None:intergenic | 50.0% | |
| GACTGGGAGTTGCACTATCT+AGG | + | chr4_1:2228653-2228672 | Msa0529060:intron | 50.0% | |
| GGGAGTTGCACTATCTAGGA+TGG | + | chr4_1:2228657-2228676 | Msa0529060:intron | 50.0% | |
| GGTTGAGCTAGAGCATGATG+TGG | + | chr4_1:2228898-2228917 | Msa0529060:intron | 50.0% | |
| GCATGAGGTGGAGTTTGATG+CGG | + | chr4_1:2228937-2228956 | Msa0529060:intron | 50.0% | |
| AAGCTGTGGAACAGCCTGAA+AGG | + | chr4_1:2228969-2228988 | Msa0529060:intron | 50.0% | |
| TATGCCTTCACCAGCCTTTC+AGG | - | chr4_1:2228986-2229005 | None:intergenic | 50.0% | |
| GAAGCAAACTGTTGTGGAGG+TGG | + | chr4_1:2229009-2229028 | Msa0529060:intron | 50.0% | |
| TGTGGAGGTGGATGAAACTG+TGG | + | chr4_1:2229021-2229040 | Msa0529060:intron | 50.0% | |
| ! | TCAATGGTTTTCTCCCCTCG+GGG | - | chr4_1:2229077-2229096 | None:intergenic | 50.0% |
| ! | CTCAATGGTTTTCTCCCCTC+GGG | - | chr4_1:2229078-2229097 | None:intergenic | 50.0% |
| GACAGATATGAACCAGGGGA+AGG | + | chr4_1:2229097-2229116 | Msa0529060:intron | 50.0% | |
| AGATATGAACCAGGGGAAGG+AGG | + | chr4_1:2229100-2229119 | Msa0529060:intron | 50.0% | |
| TGAGGTCATGATGGCTGCTA+TGG | - | chr4_1:2229244-2229263 | None:intergenic | 50.0% | |
| GCTGACATACTCTGGTGATC+GGG | - | chr4_1:2229277-2229296 | None:intergenic | 50.0% | |
| TCACCAGAGTATGTCAGCAG+AGG | + | chr4_1:2229279-2229298 | Msa0529060:intron | 50.0% | |
| GTCTCTGTTACAGAGCTTGC+TGG | + | chr4_1:2229348-2229367 | Msa0529060:intron | 50.0% | |
| GGATTCTCTCGCGATAGATG+GGG | - | chr4_1:2229481-2229500 | None:intergenic | 50.0% | |
| ! | TCGACCACCACACACTTTTC+AGG | - | chr4_1:2229760-2229779 | None:intergenic | 50.0% |
| ! | TGAAAAGTGTGTGGTGGTCG+AGG | + | chr4_1:2229759-2229778 | Msa0529060:intron | 50.0% |
| AGCTGCTGCACTAGTCAAAG+TGG | + | chr4_1:2230110-2230129 | Msa0529060:intron | 50.0% | |
| CTGCACTAGTCAAAGTGGCA+TGG | + | chr4_1:2230115-2230134 | Msa0529060:intron | 50.0% | |
| TCACAGCACCACTGAACACT+AGG | - | chr4_1:2230148-2230167 | None:intergenic | 50.0% | |
| AGCTTCGACTCTTTCGCTAC+GGG | - | chr4_1:2230332-2230351 | None:intergenic | 50.0% | |
| AAGCTTCTTCAAGGGACCCT+AGG | + | chr4_1:2230347-2230366 | Msa0529060:intron | 50.0% | |
| ACTACACACAGTCACGAGGT+CGG | - | chr4_1:2231117-2231136 | None:intergenic | 50.0% | |
| CACTTTCCTCCACCATGAAG+TGG | + | chr4_1:2231400-2231419 | Msa0529060:CDS | 50.0% | |
| ! | TTGTTGCCACTTCATGGTGG+AGG | - | chr4_1:2231409-2231428 | None:intergenic | 50.0% |
| !! | AGCTTGTTGCCACTTCATGG+TGG | - | chr4_1:2231412-2231431 | None:intergenic | 50.0% |
| TCCTTGGATGCTCCTATTGC+TGG | + | chr4_1:2231511-2231530 | Msa0529060:CDS | 50.0% | |
| !! | TCCAGCAATAGGAGCATCCA+AGG | - | chr4_1:2231515-2231534 | None:intergenic | 50.0% |
| GAGGATAGTCCATGGCAGAG+TGG | + | chr4_1:2226367-2226386 | Msa0529060:CDS | 55.0% | |
| TCCGTCGTTGCGTTCTTCAC+AGG | + | chr4_1:2226457-2226476 | Msa0529060:intron | 55.0% | |
| ! | GTCTGGGATGCAAACCATGG+GGG | + | chr4_1:2228032-2228051 | Msa0529060:intron | 55.0% |
| AGGATTTAGGAGGGGAAGGG+AGG | + | chr4_1:2228180-2228199 | Msa0529060:intron | 55.0% | |
| GGATTTAGGAGGGGAAGGGA+GGG | + | chr4_1:2228181-2228200 | Msa0529060:intron | 55.0% | |
| GATTTAGGAGGGGAAGGGAG+GGG | + | chr4_1:2228182-2228201 | Msa0529060:intron | 55.0% | |
| ATGGAGGGTTTAGGAGGGGA+GGG | - | chr4_1:2228366-2228385 | None:intergenic | 55.0% | |
| GGTTGACTGGCGGAGGATAT+CGG | + | chr4_1:2228506-2228525 | Msa0529060:intron | 55.0% | |
| GTTGACTGGCGGAGGATATC+GGG | + | chr4_1:2228507-2228526 | Msa0529060:intron | 55.0% | |
| GAACAAGGGGACGCAAGCAT+AGG | + | chr4_1:2228877-2228896 | Msa0529060:intron | 55.0% | |
| TGAGGTGGAGTTTGATGCGG+TGG | + | chr4_1:2228940-2228959 | Msa0529060:intron | 55.0% | |
| TGCGGTGGTAGCATAAGCTG+TGG | + | chr4_1:2228955-2228974 | Msa0529060:intron | 55.0% | |
| TGTGGAACAGCCTGAAAGGC+TGG | + | chr4_1:2228973-2228992 | Msa0529060:intron | 55.0% | |
| ACAGCCTGAAAGGCTGGTGA+AGG | + | chr4_1:2228979-2228998 | Msa0529060:intron | 55.0% | |
| TATGAACCAGGGGAAGGAGG+TGG | + | chr4_1:2229103-2229122 | Msa0529060:intron | 55.0% | |
| GGTCATGATGGCTGCTATGG+TGG | - | chr4_1:2229241-2229260 | None:intergenic | 55.0% | |
| CGAACTCTCTGGTGAAGTGC+AGG | + | chr4_1:2229371-2229390 | Msa0529060:intron | 55.0% | |
| GGGGAAGATTACCAGAGCAG+TGG | + | chr4_1:2229707-2229726 | Msa0529060:intron | 55.0% | |
| AAAGTGTGTGGTGGTCGAGG+TGG | + | chr4_1:2229762-2229781 | Msa0529060:intron | 55.0% | |
| GGATGCTCCTATTGCTGGAC+TGG | + | chr4_1:2231516-2231535 | Msa0529060:CDS | 55.0% | |
| GATGGAGGGTTTAGGAGGGG+AGG | - | chr4_1:2228367-2228386 | None:intergenic | 60.0% | |
| ACTGTGAGGTTGACTGGCGG+AGG | + | chr4_1:2228499-2228518 | Msa0529060:intron | 60.0% | |
| ACTGGCGGAGGATATCGGGA+TGG | + | chr4_1:2228511-2228530 | Msa0529060:intron | 60.0% | |
| GAAGGAGGTGGAGCCTAGAG+AGG | + | chr4_1:2229115-2229134 | Msa0529060:intron | 60.0% | |
| !! | GAGCTTGCTGGCGAACTCTC+TGG | + | chr4_1:2229360-2229379 | Msa0529060:intron | 60.0% |
| CACACAGTCACGAGGTCGGT+TGG | - | chr4_1:2231113-2231132 | None:intergenic | 60.0% | |
| TTAGGAGGGGAAGGGAGGGG+AGG | + | chr4_1:2228185-2228204 | Msa0529060:intron | 65.0% | |
| TAGGAGGGGAAGGGAGGGGA+GGG | + | chr4_1:2228186-2228205 | Msa0529060:intron | 65.0% | |
| TAGGCTCCACCTCCTTCCCC+TGG | - | chr4_1:2229112-2229131 | None:intergenic | 65.0% | |
| TGTGGTGGTCGAGGTGGTGC+TGG | + | chr4_1:2229768-2229787 | Msa0529060:intron | 65.0% | |
| ! | GGTGGTCGAGGTGGTGCTGG+TGG | + | chr4_1:2229771-2229790 | Msa0529060:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 2226187 | 2231627 | 2226187 | ID=Msa0529060;Name=Msa0529060 |
| chr4_1 | mRNA | 2226187 | 2231627 | 2226187 | ID=Msa0529060-mRNA-1;Parent=Msa0529060;Name=Msa0529060-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0.5|0.66|1|0|0.66|3|16|260 |
| chr4_1 | exon | 2226187 | 2226408 | 2226187 | ID=Msa0529060-mRNA-1:exon:651;Parent=Msa0529060-mRNA-1 |
| chr4_1 | exon | 2227588 | 2227806 | 2227588 | ID=Msa0529060-mRNA-1:exon:652;Parent=Msa0529060-mRNA-1 |
| chr4_1 | exon | 2231270 | 2231627 | 2231270 | ID=Msa0529060-mRNA-1:exon:653;Parent=Msa0529060-mRNA-1 |
| chr4_1 | CDS | 2226187 | 2226408 | 2226187 | ID=Msa0529060-mRNA-1:cds;Parent=Msa0529060-mRNA-1 |
| chr4_1 | CDS | 2227588 | 2227806 | 2227588 | ID=Msa0529060-mRNA-1:cds;Parent=Msa0529060-mRNA-1 |
| chr4_1 | CDS | 2231270 | 2231611 | 2231270 | ID=Msa0529060-mRNA-1:cds;Parent=Msa0529060-mRNA-1 |
| chr4_1 | three_prime_UTR | 2231612 | 2231627 | 2231612 | ID=Msa0529060-mRNA-1:three_prime_utr;Parent=Msa0529060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
