AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0624360


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0624360 MtrunA17_Chr8g0358961 96.476 227 8 0 1 227 1 227 1.93e-168 462
Msa0624360 MtrunA17_Chr4g0058821 42.222 180 95 4 39 215 23 196 9.23e-35 123
Msa0624360 MtrunA17_Chr8g0368391 36.058 208 119 5 13 215 5 203 1.64e-33 120
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0624360 AT1G17100.1 62.632 190 68 1 35 221 42 231 2.30e-89 263
Msa0624360 AT1G78450.1 47.768 224 104 4 4 222 1 216 9.62e-70 213
Msa0624360 AT1G78460.1 45.455 187 94 3 35 220 40 219 7.55e-52 167

Find 49 sgRNAs with CRISPR-Local

Find 180 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTATCTCAATTTCATTATC+AGG 0.236313 4_3:-2264503 Msa0624360:CDS
AAGCTACTAGAACTGGTTTC+AGG 0.240236 4_3:-2264334 Msa0624360:CDS
TTCTTGTTTGATTTGGAAAA+TGG 0.250380 4_3:-2262932 Msa0624360:CDS
GACTTTATAATTCGTCTGTT+TGG 0.265253 4_3:-2264394 Msa0624360:CDS
GGATTTGCTTGGTTCACTTT+TGG 0.290356 4_3:+2263199 None:intergenic
TAGGCTATTTGATTACATTC+AGG 0.303343 4_3:-2263332 Msa0624360:CDS
GATATGGTTCTTGTTTGATT+TGG 0.325272 4_3:-2262939 Msa0624360:CDS
TGAACATGAAGACCCTTTGC+AGG 0.337320 4_3:+2263172 None:intergenic
AATGTCTTGAATAGGAGAAT+TGG 0.347748 4_3:+2264367 None:intergenic
TATGCAGCAGTTAGACAATT+TGG 0.366995 4_3:-2263133 Msa0624360:CDS
ATTCAAAAGGGGCATTGTAC+TGG 0.369508 4_3:+2262981 None:intergenic
CTTGTTGAAGCTACTAGAAC+TGG 0.386778 4_3:-2264341 Msa0624360:CDS
ACAAATGAAGACTCACAAAA+TGG 0.387846 4_3:+2263238 None:intergenic
AGCTTCTATGACATCATAGT+TGG 0.390370 4_3:+2264436 None:intergenic
TTGCAGGAGGTGGATTTGCT+TGG 0.398401 4_3:+2263188 None:intergenic
ACCCTATTATCATATTCAAA+AGG 0.401311 4_3:+2262968 None:intergenic
ACAAGAGAAATGTCTTGAAT+AGG 0.403479 4_3:+2264359 None:intergenic
CCCTATTATCATATTCAAAA+GGG 0.409363 4_3:+2262969 None:intergenic
AGGCTATTTGATTACATTCA+GGG 0.450840 4_3:-2263331 Msa0624360:CDS
TGAAGACCCTTTGCAGGAGG+TGG 0.452104 4_3:+2263178 None:intergenic
TGAGGAAGCTGCAGCGTTGA+AGG 0.460765 4_3:-2263083 Msa0624360:CDS
AACTATGATGTCATAGAAGC+TGG 0.463929 4_3:-2264434 Msa0624360:CDS
ATAATAGGGTGAATGAGATA+TGG 0.465751 4_3:-2262955 Msa0624360:CDS
GCGTTGAAGGACAGTATTGC+CGG 0.485645 4_3:-2263070 Msa0624360:CDS
GATGTCATAGAAGCTGGAAA+TGG 0.490076 4_3:-2264428 Msa0624360:CDS
AGGGTCTTCATGTTCAAAGA+TGG 0.509198 4_3:-2263165 Msa0624360:CDS
AGCAAATCCACCTCCTGCAA+AGG 0.509519 4_3:-2263185 Msa0624360:CDS
GCAAATCCACCTCCTGCAAA+GGG 0.510194 4_3:-2263184 Msa0624360:CDS
GGACACTCTATGCGTTTGCA+TGG 0.518091 4_3:+2264458 None:intergenic
TGTTGTGCTGGTTACAGCCA+TGG 0.533600 4_3:+2264550 None:intergenic
GGTAAGACTTCAGAGAGAAC+AGG 0.536541 4_3:+2263271 None:intergenic
TTCAAAAGGGGCATTGTACT+GGG 0.538233 4_3:+2262982 None:intergenic
TGAGAGCTTCCATGTTGTGC+TGG 0.538362 4_3:+2264538 None:intergenic
AACTCGAAGCATGCAATCCA+TGG 0.545237 4_3:-2264567 None:intergenic
ATTGAACAAAGCCGTAGAGC+TGG 0.550259 4_3:-2263028 Msa0624360:CDS
GCTTCTATGACATCATAGTT+GGG 0.553146 4_3:+2264437 None:intergenic
TCACAAAATGGTCCATCACT+TGG 0.562399 4_3:+2263250 None:intergenic
TCTGAAGTCTTACCAAGTGA+TGG 0.564116 4_3:-2263262 Msa0624360:CDS
CTGAAGCATGACCAGCTCTA+CGG 0.568630 4_3:+2263017 None:intergenic
GCAGCAGTTAGACAATTTGG+TGG 0.569529 4_3:-2263130 Msa0624360:CDS
GGCTATTTGATTACATTCAG+GGG 0.574090 4_3:-2263330 Msa0624360:CDS
TTTGTCAAAGATACAGATGT+TGG 0.582094 4_3:-2263106 Msa0624360:CDS
AGCAGAAGACCACTTAGTAC+CGG 0.588835 4_3:+2263051 None:intergenic
ACAGTATTGCCGGTACTAAG+TGG 0.612734 4_3:-2263060 Msa0624360:CDS
TGGCTGTAACCAGCACAACA+TGG 0.625059 4_3:-2264547 Msa0624360:CDS
CCTATTATCATATTCAAAAG+GGG 0.627523 4_3:+2262970 None:intergenic
CAAAGATACAGATGTTGGTG+AGG 0.634324 4_3:-2263101 Msa0624360:CDS
ACATGAAGACCCTTTGCAGG+AGG 0.641553 4_3:+2263175 None:intergenic
CTACTAGAACTGGTTTCAGG+AGG 0.662955 4_3:-2264331 Msa0624360:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAGTTAAACATCATATTTTT+TGG + chr4_3:2263251-2263270 None:intergenic 15.0%
!! AAAGTTGAATACATATAAAA+GGG - chr4_3:2263383-2263402 Msa0624360:intron 15.0%
!! AATGTGAAATGATTTATATT+TGG - chr4_3:2263834-2263853 Msa0624360:intron 15.0%
!!! TTAATCTTTTTCTTTTTCTT+AGG - chr4_3:2264122-2264141 Msa0624360:intron 15.0%
!!! AAGTTAAACATCATATTTTT+TGG + chr4_3:2263251-2263270 None:intergenic 15.0%
!! AAAGTTGAATACATATAAAA+GGG - chr4_3:2263383-2263402 Msa0624360:intron 15.0%
!! AATGTGAAATGATTTATATT+TGG - chr4_3:2263834-2263853 Msa0624360:intron 15.0%
!!! TTAATCTTTTTCTTTTTCTT+AGG - chr4_3:2264122-2264141 Msa0624360:intron 15.0%
!!! AGTTTTTTCAGTAATAGTTT+AGG - chr4_3:2263184-2263203 Msa0624360:CDS 20.0%
!! GAAAGTTGAATACATATAAA+AGG - chr4_3:2263382-2263401 Msa0624360:intron 20.0%
!!! AAATTAATTGTCTCTAGAAT+GGG + chr4_3:2263918-2263937 None:intergenic 20.0%
!!! AAAATTAATTGTCTCTAGAA+TGG + chr4_3:2263919-2263938 None:intergenic 20.0%
!!! AGTTTTTTCAGTAATAGTTT+AGG - chr4_3:2263184-2263203 Msa0624360:CDS 20.0%
!! GAAAGTTGAATACATATAAA+AGG - chr4_3:2263382-2263401 Msa0624360:intron 20.0%
!!! AAATTAATTGTCTCTAGAAT+GGG + chr4_3:2263918-2263937 None:intergenic 20.0%
!!! AAAATTAATTGTCTCTAGAA+TGG + chr4_3:2263919-2263938 None:intergenic 20.0%
! CTTATCTCAATTTCATTATC+AGG - chr4_3:2262970-2262989 Msa0624360:CDS 25.0%
! TTTCAAATTATTAGCTGTGT+CGG + chr4_3:2263478-2263497 None:intergenic 25.0%
! AACTAATTCTAACTTGAAGT+TGG + chr4_3:2263633-2263652 None:intergenic 25.0%
!!! ACAATTGATTTTGACATGTT+TGG + chr4_3:2263688-2263707 None:intergenic 25.0%
!!! ACAATTGATTTTAGCATGTT+TGG + chr4_3:2263954-2263973 None:intergenic 25.0%
! ATGCTAAAATCAATTGTTTC+TGG - chr4_3:2263957-2263976 Msa0624360:intron 25.0%
! TGAACTTAATGATCATTCAT+TGG + chr4_3:2264028-2264047 None:intergenic 25.0%
!!! AAGTTTTAATGAAGTGTTTG+TGG - chr4_3:2264062-2264081 Msa0624360:intron 25.0%
! AATCAAGTTTAGTAACTCTT+CGG + chr4_3:2264104-2264123 None:intergenic 25.0%
! CCTATTATCATATTCAAAAG+GGG + chr4_3:2264506-2264525 None:intergenic 25.0%
! CCCTATTATCATATTCAAAA+GGG + chr4_3:2264507-2264526 None:intergenic 25.0%
!! CCCTTTTGAATATGATAATA+GGG - chr4_3:2264504-2264523 Msa0624360:CDS 25.0%
! ACCCTATTATCATATTCAAA+AGG + chr4_3:2264508-2264527 None:intergenic 25.0%
!!! TTCTTGTTTGATTTGGAAAA+TGG - chr4_3:2264541-2264560 Msa0624360:CDS 25.0%
! CTTATCTCAATTTCATTATC+AGG - chr4_3:2262970-2262989 Msa0624360:CDS 25.0%
! TTTCAAATTATTAGCTGTGT+CGG + chr4_3:2263478-2263497 None:intergenic 25.0%
! AACTAATTCTAACTTGAAGT+TGG + chr4_3:2263633-2263652 None:intergenic 25.0%
!!! ACAATTGATTTTGACATGTT+TGG + chr4_3:2263688-2263707 None:intergenic 25.0%
!!! ACAATTGATTTTAGCATGTT+TGG + chr4_3:2263954-2263973 None:intergenic 25.0%
! ATGCTAAAATCAATTGTTTC+TGG - chr4_3:2263957-2263976 Msa0624360:intron 25.0%
! TGAACTTAATGATCATTCAT+TGG + chr4_3:2264028-2264047 None:intergenic 25.0%
!!! AAGTTTTAATGAAGTGTTTG+TGG - chr4_3:2264062-2264081 Msa0624360:intron 25.0%
! AATCAAGTTTAGTAACTCTT+CGG + chr4_3:2264104-2264123 None:intergenic 25.0%
! CCTATTATCATATTCAAAAG+GGG + chr4_3:2264506-2264525 None:intergenic 25.0%
! CCCTATTATCATATTCAAAA+GGG + chr4_3:2264507-2264526 None:intergenic 25.0%
!! CCCTTTTGAATATGATAATA+GGG - chr4_3:2264504-2264523 Msa0624360:CDS 25.0%
! ACCCTATTATCATATTCAAA+AGG + chr4_3:2264508-2264527 None:intergenic 25.0%
!!! TTCTTGTTTGATTTGGAAAA+TGG - chr4_3:2264541-2264560 Msa0624360:CDS 25.0%
GACTTTATAATTCGTCTGTT+TGG - chr4_3:2263079-2263098 Msa0624360:CDS 30.0%
AATGTCTTGAATAGGAGAAT+TGG + chr4_3:2263109-2263128 None:intergenic 30.0%
ACAAGAGAAATGTCTTGAAT+AGG + chr4_3:2263117-2263136 None:intergenic 30.0%
TAGGCTATTTGATTACATTC+AGG - chr4_3:2264141-2264160 Msa0624360:intron 30.0%
AGGCTATTTGATTACATTCA+GGG - chr4_3:2264142-2264161 Msa0624360:intron 30.0%
ACAAATGAAGACTCACAAAA+TGG + chr4_3:2264238-2264257 None:intergenic 30.0%
TTTGTCAAAGATACAGATGT+TGG - chr4_3:2264367-2264386 Msa0624360:CDS 30.0%
! CCCCTTTTGAATATGATAAT+AGG - chr4_3:2264503-2264522 Msa0624360:CDS 30.0%
ATAATAGGGTGAATGAGATA+TGG - chr4_3:2264518-2264537 Msa0624360:CDS 30.0%
! GATATGGTTCTTGTTTGATT+TGG - chr4_3:2264534-2264553 Msa0624360:CDS 30.0%
GACTTTATAATTCGTCTGTT+TGG - chr4_3:2263079-2263098 Msa0624360:CDS 30.0%
AATGTCTTGAATAGGAGAAT+TGG + chr4_3:2263109-2263128 None:intergenic 30.0%
ACAAGAGAAATGTCTTGAAT+AGG + chr4_3:2263117-2263136 None:intergenic 30.0%
TAGGCTATTTGATTACATTC+AGG - chr4_3:2264141-2264160 Msa0624360:intron 30.0%
AGGCTATTTGATTACATTCA+GGG - chr4_3:2264142-2264161 Msa0624360:intron 30.0%
ACAAATGAAGACTCACAAAA+TGG + chr4_3:2264238-2264257 None:intergenic 30.0%
TTTGTCAAAGATACAGATGT+TGG - chr4_3:2264367-2264386 Msa0624360:CDS 30.0%
! CCCCTTTTGAATATGATAAT+AGG - chr4_3:2264503-2264522 Msa0624360:CDS 30.0%
ATAATAGGGTGAATGAGATA+TGG - chr4_3:2264518-2264537 Msa0624360:CDS 30.0%
! GATATGGTTCTTGTTTGATT+TGG - chr4_3:2264534-2264553 Msa0624360:CDS 30.0%
GCTTCTATGACATCATAGTT+GGG + chr4_3:2263039-2263058 None:intergenic 35.0%
AGCTTCTATGACATCATAGT+TGG + chr4_3:2263040-2263059 None:intergenic 35.0%
AACTATGATGTCATAGAAGC+TGG - chr4_3:2263039-2263058 Msa0624360:CDS 35.0%
! TTAGTGTGTGTTTGGTTTCA+CGG + chr4_3:2264004-2264023 None:intergenic 35.0%
!! TCATTGGTTTAGTGTGTGTT+TGG + chr4_3:2264012-2264031 None:intergenic 35.0%
AGTTTAGTAACTCTTCGGAT+GGG + chr4_3:2264099-2264118 None:intergenic 35.0%
AAGTTTAGTAACTCTTCGGA+TGG + chr4_3:2264100-2264119 None:intergenic 35.0%
GGCTATTTGATTACATTCAG+GGG - chr4_3:2264143-2264162 Msa0624360:intron 35.0%
!!! CTGTCATCTCAATTTTTTGC+TGG + chr4_3:2264180-2264199 None:intergenic 35.0%
TATGCAGCAGTTAGACAATT+TGG - chr4_3:2264340-2264359 Msa0624360:CDS 35.0%
GCTTCTATGACATCATAGTT+GGG + chr4_3:2263039-2263058 None:intergenic 35.0%
AGCTTCTATGACATCATAGT+TGG + chr4_3:2263040-2263059 None:intergenic 35.0%
AACTATGATGTCATAGAAGC+TGG - chr4_3:2263039-2263058 Msa0624360:CDS 35.0%
! TTAGTGTGTGTTTGGTTTCA+CGG + chr4_3:2264004-2264023 None:intergenic 35.0%
!! TCATTGGTTTAGTGTGTGTT+TGG + chr4_3:2264012-2264031 None:intergenic 35.0%
AGTTTAGTAACTCTTCGGAT+GGG + chr4_3:2264099-2264118 None:intergenic 35.0%
AAGTTTAGTAACTCTTCGGA+TGG + chr4_3:2264100-2264119 None:intergenic 35.0%
GGCTATTTGATTACATTCAG+GGG - chr4_3:2264143-2264162 Msa0624360:intron 35.0%
!!! CTGTCATCTCAATTTTTTGC+TGG + chr4_3:2264180-2264199 None:intergenic 35.0%
TATGCAGCAGTTAGACAATT+TGG - chr4_3:2264340-2264359 Msa0624360:CDS 35.0%
GATGTCATAGAAGCTGGAAA+TGG - chr4_3:2263045-2263064 Msa0624360:CDS 40.0%
CTTGTTGAAGCTACTAGAAC+TGG - chr4_3:2263132-2263151 Msa0624360:CDS 40.0%
! AAGCTACTAGAACTGGTTTC+AGG - chr4_3:2263139-2263158 Msa0624360:CDS 40.0%
GTGTTTGCTTCTAGTGTGAT+TGG - chr4_3:2263298-2263317 Msa0624360:CDS 40.0%
! AATTACAAGTGTCGCTGTGT+CGG - chr4_3:2263518-2263537 Msa0624360:intron 40.0%
TATGAAGCACAGACAATCCT+CGG + chr4_3:2263585-2263604 None:intergenic 40.0%
! TAATGAAGTGTTTGTGGTGC+TGG - chr4_3:2264068-2264087 Msa0624360:intron 40.0%
! TCTGAAGTCTTACCAAGTGA+TGG - chr4_3:2264211-2264230 Msa0624360:intron 40.0%
TCACAAAATGGTCCATCACT+TGG + chr4_3:2264226-2264245 None:intergenic 40.0%
!! GGATTTGCTTGGTTCACTTT+TGG + chr4_3:2264277-2264296 None:intergenic 40.0%
AGGGTCTTCATGTTCAAAGA+TGG - chr4_3:2264308-2264327 Msa0624360:intron 40.0%
CAAAGATACAGATGTTGGTG+AGG - chr4_3:2264372-2264391 Msa0624360:CDS 40.0%
!! TTCAAAAGGGGCATTGTACT+GGG + chr4_3:2264494-2264513 None:intergenic 40.0%
!! ATTCAAAAGGGGCATTGTAC+TGG + chr4_3:2264495-2264514 None:intergenic 40.0%
GATGTCATAGAAGCTGGAAA+TGG - chr4_3:2263045-2263064 Msa0624360:CDS 40.0%
CTTGTTGAAGCTACTAGAAC+TGG - chr4_3:2263132-2263151 Msa0624360:CDS 40.0%
! AAGCTACTAGAACTGGTTTC+AGG - chr4_3:2263139-2263158 Msa0624360:CDS 40.0%
GTGTTTGCTTCTAGTGTGAT+TGG - chr4_3:2263298-2263317 Msa0624360:CDS 40.0%
! AATTACAAGTGTCGCTGTGT+CGG - chr4_3:2263518-2263537 Msa0624360:intron 40.0%
TATGAAGCACAGACAATCCT+CGG + chr4_3:2263585-2263604 None:intergenic 40.0%
! TAATGAAGTGTTTGTGGTGC+TGG - chr4_3:2264068-2264087 Msa0624360:intron 40.0%
! TCTGAAGTCTTACCAAGTGA+TGG - chr4_3:2264211-2264230 Msa0624360:intron 40.0%
TCACAAAATGGTCCATCACT+TGG + chr4_3:2264226-2264245 None:intergenic 40.0%
!! GGATTTGCTTGGTTCACTTT+TGG + chr4_3:2264277-2264296 None:intergenic 40.0%
AGGGTCTTCATGTTCAAAGA+TGG - chr4_3:2264308-2264327 Msa0624360:intron 40.0%
CAAAGATACAGATGTTGGTG+AGG - chr4_3:2264372-2264391 Msa0624360:CDS 40.0%
!! TTCAAAAGGGGCATTGTACT+GGG + chr4_3:2264494-2264513 None:intergenic 40.0%
!! ATTCAAAAGGGGCATTGTAC+TGG + chr4_3:2264495-2264514 None:intergenic 40.0%
! CTACTAGAACTGGTTTCAGG+AGG - chr4_3:2263142-2263161 Msa0624360:CDS 45.0%
GGGAGTTGAAAAATCGTGTC+TGG - chr4_3:2263403-2263422 Msa0624360:intron 45.0%
ACTGAGATACACCTAATCCG+AGG - chr4_3:2263565-2263584 Msa0624360:intron 45.0%
GAGGATTGTCTGTGCTTCAT+AGG - chr4_3:2263584-2263603 Msa0624360:intron 45.0%
TTGTCTGTGCTTCATAGGTC+TGG - chr4_3:2263589-2263608 Msa0624360:intron 45.0%
!! ACTCTTCCCACTTTTCACGT+TGG - chr4_3:2263725-2263744 Msa0624360:intron 45.0%
!! CTCTTCCCACTTTTCACGTT+GGG - chr4_3:2263726-2263745 Msa0624360:intron 45.0%
CACTTCCCAACGTGAAAAGT+GGG + chr4_3:2263734-2263753 None:intergenic 45.0%
ACACTTCCCAACGTGAAAAG+TGG + chr4_3:2263735-2263754 None:intergenic 45.0%
! TGTGTGTTTGGTTTCACGGT+GGG + chr4_3:2264000-2264019 None:intergenic 45.0%
GGTAAGACTTCAGAGAGAAC+AGG + chr4_3:2264205-2264224 None:intergenic 45.0%
TGAACATGAAGACCCTTTGC+AGG + chr4_3:2264304-2264323 None:intergenic 45.0%
GCAGCAGTTAGACAATTTGG+TGG - chr4_3:2264343-2264362 Msa0624360:CDS 45.0%
ACAGTATTGCCGGTACTAAG+TGG - chr4_3:2264413-2264432 Msa0624360:CDS 45.0%
AGCAGAAGACCACTTAGTAC+CGG + chr4_3:2264425-2264444 None:intergenic 45.0%
ATTGAACAAAGCCGTAGAGC+TGG - chr4_3:2264445-2264464 Msa0624360:CDS 45.0%
! CTACTAGAACTGGTTTCAGG+AGG - chr4_3:2263142-2263161 Msa0624360:CDS 45.0%
GGGAGTTGAAAAATCGTGTC+TGG - chr4_3:2263403-2263422 Msa0624360:intron 45.0%
ACTGAGATACACCTAATCCG+AGG - chr4_3:2263565-2263584 Msa0624360:intron 45.0%
GAGGATTGTCTGTGCTTCAT+AGG - chr4_3:2263584-2263603 Msa0624360:intron 45.0%
TTGTCTGTGCTTCATAGGTC+TGG - chr4_3:2263589-2263608 Msa0624360:intron 45.0%
!! ACTCTTCCCACTTTTCACGT+TGG - chr4_3:2263725-2263744 Msa0624360:intron 45.0%
!! CTCTTCCCACTTTTCACGTT+GGG - chr4_3:2263726-2263745 Msa0624360:intron 45.0%
CACTTCCCAACGTGAAAAGT+GGG + chr4_3:2263734-2263753 None:intergenic 45.0%
ACACTTCCCAACGTGAAAAG+TGG + chr4_3:2263735-2263754 None:intergenic 45.0%
! TGTGTGTTTGGTTTCACGGT+GGG + chr4_3:2264000-2264019 None:intergenic 45.0%
GGTAAGACTTCAGAGAGAAC+AGG + chr4_3:2264205-2264224 None:intergenic 45.0%
TGAACATGAAGACCCTTTGC+AGG + chr4_3:2264304-2264323 None:intergenic 45.0%
GCAGCAGTTAGACAATTTGG+TGG - chr4_3:2264343-2264362 Msa0624360:CDS 45.0%
ACAGTATTGCCGGTACTAAG+TGG - chr4_3:2264413-2264432 Msa0624360:CDS 45.0%
AGCAGAAGACCACTTAGTAC+CGG + chr4_3:2264425-2264444 None:intergenic 45.0%
ATTGAACAAAGCCGTAGAGC+TGG - chr4_3:2264445-2264464 Msa0624360:CDS 45.0%
!! TGTTGTGCTGGTTACAGCCA+TGG + chr4_3:2262926-2262945 None:intergenic 50.0%
TGGCTGTAACCAGCACAACA+TGG - chr4_3:2262926-2262945 Msa0624360:CDS 50.0%
TGAGAGCTTCCATGTTGTGC+TGG + chr4_3:2262938-2262957 None:intergenic 50.0%
GGACACTCTATGCGTTTGCA+TGG + chr4_3:2263018-2263037 None:intergenic 50.0%
! GTGTCTGGAGCTATGAAGCA+CGG - chr4_3:2263418-2263437 Msa0624360:intron 50.0%
GCACAGACAATCCTCGGATT+AGG + chr4_3:2263579-2263598 None:intergenic 50.0%
! GTGTGTGTTTGGTTTCACGG+TGG + chr4_3:2264001-2264020 None:intergenic 50.0%
! TTGCAGGAGGTGGATTTGCT+TGG + chr4_3:2264288-2264307 None:intergenic 50.0%
AGCAAATCCACCTCCTGCAA+AGG - chr4_3:2264288-2264307 Msa0624360:intron 50.0%
GCAAATCCACCTCCTGCAAA+GGG - chr4_3:2264289-2264308 Msa0624360:intron 50.0%
ACATGAAGACCCTTTGCAGG+AGG + chr4_3:2264301-2264320 None:intergenic 50.0%
GCGTTGAAGGACAGTATTGC+CGG - chr4_3:2264403-2264422 Msa0624360:CDS 50.0%
CTGAAGCATGACCAGCTCTA+CGG + chr4_3:2264459-2264478 None:intergenic 50.0%
!! TGTTGTGCTGGTTACAGCCA+TGG + chr4_3:2262926-2262945 None:intergenic 50.0%
TGGCTGTAACCAGCACAACA+TGG - chr4_3:2262926-2262945 Msa0624360:CDS 50.0%
TGAGAGCTTCCATGTTGTGC+TGG + chr4_3:2262938-2262957 None:intergenic 50.0%
GGACACTCTATGCGTTTGCA+TGG + chr4_3:2263018-2263037 None:intergenic 50.0%
! GTGTCTGGAGCTATGAAGCA+CGG - chr4_3:2263418-2263437 Msa0624360:intron 50.0%
GCACAGACAATCCTCGGATT+AGG + chr4_3:2263579-2263598 None:intergenic 50.0%
! GTGTGTGTTTGGTTTCACGG+TGG + chr4_3:2264001-2264020 None:intergenic 50.0%
! TTGCAGGAGGTGGATTTGCT+TGG + chr4_3:2264288-2264307 None:intergenic 50.0%
AGCAAATCCACCTCCTGCAA+AGG - chr4_3:2264288-2264307 Msa0624360:intron 50.0%
GCAAATCCACCTCCTGCAAA+GGG - chr4_3:2264289-2264308 Msa0624360:intron 50.0%
ACATGAAGACCCTTTGCAGG+AGG + chr4_3:2264301-2264320 None:intergenic 50.0%
GCGTTGAAGGACAGTATTGC+CGG - chr4_3:2264403-2264422 Msa0624360:CDS 50.0%
CTGAAGCATGACCAGCTCTA+CGG + chr4_3:2264459-2264478 None:intergenic 50.0%
GGAGCTATGAAGCACGGATG+CGG - chr4_3:2263424-2263443 Msa0624360:intron 55.0%
ATGAAGCACGGATGCGGACA+CGG - chr4_3:2263430-2263449 Msa0624360:intron 55.0%
TGAAGACCCTTTGCAGGAGG+TGG + chr4_3:2264298-2264317 None:intergenic 55.0%
! TGAGGAAGCTGCAGCGTTGA+AGG - chr4_3:2264390-2264409 Msa0624360:CDS 55.0%
GGAGCTATGAAGCACGGATG+CGG - chr4_3:2263424-2263443 Msa0624360:intron 55.0%
ATGAAGCACGGATGCGGACA+CGG - chr4_3:2263430-2263449 Msa0624360:intron 55.0%
TGAAGACCCTTTGCAGGAGG+TGG + chr4_3:2264298-2264317 None:intergenic 55.0%
! TGAGGAAGCTGCAGCGTTGA+AGG - chr4_3:2264390-2264409 Msa0624360:CDS 55.0%
ATGCGGACACGGACACGACA+CGG - chr4_3:2263441-2263460 Msa0624360:intron 60.0%
ATGCGGACACGGACACGACA+CGG - chr4_3:2263441-2263460 Msa0624360:intron 60.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 2262916 2264579 2262916 ID=Msa0624360;Name=Msa0624360
chr4_3 mRNA 2262916 2264579 2262916 ID=Msa0624360-mRNA-1;Parent=Msa0624360;Name=Msa0624360-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|1|0.5|1|1|1|2|0|227
chr4_3 exon 2262916 2263351 2262916 ID=Msa0624360-mRNA-1:exon:589;Parent=Msa0624360-mRNA-1
chr4_3 exon 2264332 2264579 2264332 ID=Msa0624360-mRNA-1:exon:588;Parent=Msa0624360-mRNA-1
chr4_3 CDS 2264332 2264579 2264332 ID=Msa0624360-mRNA-1:cds;Parent=Msa0624360-mRNA-1
chr4_3 CDS 2262916 2263351 2262916 ID=Msa0624360-mRNA-1:cds;Parent=Msa0624360-mRNA-1
Gene Sequence

>Msa0624360

ATGCAATCCATGGCTGTAACCAGCACAACATGGAAGCTCTCACTGTTCTTGACTCTTATCTCAATTTCATTATCAGGTATTCTTTCATATGATATTGTACCATGCAAACGCATAGAGTGTCCCAACTATGATGTCATAGAAGCTGGAAATGGCTATGAAATCAGACTTTATAATTCGTCTGTTTGGATTTCCAATTCTCCTATTCAAGACATTTCTCTTGTTGAAGCTACTAGAACTGGTTTCAGGAGGCTATTTGATTACATTCAGGGGAAGAACAACTACCAGCAAAAAATTGAGATGACAGCACCTGTTCTCTCTGAAGTCTTACCAAGTGATGGACCATTTTGTGAGTCTTCATTTGTTGTCAGCTTTTATGTACCAAAAGTGAACCAAGCAAATCCACCTCCTGCAAAGGGTCTTCATGTTCAAAGATGGAAAACTGTGTATGCAGCAGTTAGACAATTTGGTGGTTTTGTCAAAGATACAGATGTTGGTGAGGAAGCTGCAGCGTTGAAGGACAGTATTGCCGGTACTAAGTGGTCTTCTGCTATTGAACAAAGCCGTAGAGCTGGTCATGCTTCAGTTTACTCTGTTGCCCAGTACAATGCCCCTTTTGAATATGATAATAGGGTGAATGAGATATGGTTCTTGTTTGATTTGGAAAATGGTTTGCATTCTATGTGA

Protein sequence

>Msa0624360

MQSMAVTSTTWKLSLFLTLISISLSGILSYDIVPCKRIECPNYDVIEAGNGYEIRLYNSSVWISNSPIQDISLVEATRTGFRRLFDYIQGKNNYQQKIEMTAPVLSEVLPSDGPFCESSFVVSFYVPKVNQANPPPAKGLHVQRWKTVYAAVRQFGGFVKDTDVGEEAAALKDSIAGTKWSSAIEQSRRAGHASVYSVAQYNAPFEYDNRVNEIWFLFDLENGLHSM*