AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1345120


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1345120 MtrunA17_Chr2g0286841 92.105 342 22 2 1 337 1 342 0.0 556
Msa1345120 MtrunA17_Chr4g0066521 61.318 349 117 5 2 337 1 344 1.39e-130 376
Msa1345120 MtrunA17_Chr8g0358391 39.474 342 172 8 10 337 22 342 3.50e-59 194
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1345120 AT4G15545.1 53.824 340 131 8 6 337 16 337 1.40e-104 310
Msa1345120 AT1G16520.1 37.982 337 182 5 10 337 7 325 3.64e-63 204
Msa1345120 AT1G56080.1 37.752 347 153 8 7 333 4 307 3.96e-57 187

Find 80 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGAAAGCTGATGAGATCTT+TGG 0.305279 tig0007105:-67779 Msa1345120:CDS
TAATGCGAGGAGTCGTAGTT+TGG 0.347026 tig0007105:+68661 None:intergenic
TTCAGCAAGTGCAAGCTTAT+CGG 0.366407 tig0007105:+69930 None:intergenic
CATGGCAGAGCTGGAAGCTC+AGG 0.384727 tig0007105:-69986 Msa1345120:CDS
AACAAATAATTATTGAAAGT+TGG 0.395684 tig0007105:+68462 None:intergenic
GATCTGTATACTATATTTGA+AGG 0.396057 tig0007105:-67743 Msa1345120:CDS
CGGTTTCCCTTCAAATTGAC+AGG 0.406170 tig0007105:-68557 Msa1345120:CDS
GCTGAAGTAGAGGAAATATC+AGG 0.423713 tig0007105:+67682 None:intergenic
ATTTCCTGCATCAGAAGTAT+TGG 0.424653 tig0007105:+68927 None:intergenic
TGCAGCTATGTTACATAGTC+AGG 0.425161 tig0007105:-69115 Msa1345120:CDS
AGACGAGCTCATGGCAGAGC+TGG 0.426103 tig0007105:-69995 Msa1345120:CDS
AGAAAGCTGATGAGATCTTT+GGG 0.427930 tig0007105:-67778 Msa1345120:CDS
GATGATGCTTGAGATCTTAC+AGG 0.430804 tig0007105:+68708 None:intergenic
GTTTGCATTGAAGAAGATCT+AGG 0.432984 tig0007105:+68949 None:intergenic
GTAGAGGAAATATCAGGTAT+TGG 0.443756 tig0007105:+67688 None:intergenic
ATTAACATGTAAATCATAGT+TGG 0.445931 tig0007105:+67650 None:intergenic
AGCTCAGGCAGAGCCTCTCC+AGG 0.451645 tig0007105:-69971 Msa1345120:CDS
AATGCGAGGAGTCGTAGTTT+GGG 0.451995 tig0007105:+68662 None:intergenic
GCAGGTTTAGATGTTCTTGA+TGG 0.455452 tig0007105:+68597 None:intergenic
GTTATAGGAGAAATTGTTGA+AGG 0.457411 tig0007105:-69783 Msa1345120:intron
AAGAAGTCCTGTCAATTTGA+AGG 0.461711 tig0007105:+68550 None:intergenic
GATACAGATGCAGAAACAAT+AGG 0.464230 tig0007105:+68621 None:intergenic
CGTTTGTCTTATGAGCAGTT+TGG 0.470820 tig0007105:-67961 Msa1345120:CDS
GTACAGTGAGGAAGCTCAGT+AGG 0.476497 tig0007105:-69742 Msa1345120:CDS
GGAGAGGAATGCAGAAGCAT+TGG 0.489445 tig0007105:+70298 None:intergenic
ACTGGTTCAATGTCTAGCTC+TGG 0.504686 tig0007105:-68513 Msa1345120:CDS
TGCACTTGCTGAACAAGATA+AGG 0.510112 tig0007105:-69920 Msa1345120:intron
AGGGAAACCGCATGGCGCCT+TGG 0.511504 tig0007105:+68570 None:intergenic
CGGCTTCAGAAAGAGCAGCC+TGG 0.513407 tig0007105:+69953 None:intergenic
AGAACTTGCAGCAACTCCTC+GGG 0.515170 tig0007105:+70138 None:intergenic
ATTAGTTATTATTACAGTCA+TGG 0.521790 tig0007105:+67606 None:intergenic
CAAACCAATACTTCTGATGC+AGG 0.521825 tig0007105:-68931 Msa1345120:CDS
CGTGTTGACACGTGTTGAAA+GGG 0.523596 tig0007105:+70062 None:intergenic
ACTCCTCGCATTAGTCCTCC+TGG 0.526413 tig0007105:-68651 Msa1345120:CDS
GTAGAGCAGAAACTTCTGAT+TGG 0.533919 tig0007105:+70037 None:intergenic
TAGAACTTGCAGCAACTCCT+CGG 0.534065 tig0007105:+70137 None:intergenic
TTCCCACAAACAAACAAAAG+AGG 0.537066 tig0007105:-67908 Msa1345120:intron
AGAAGTCCTGTCAATTTGAA+GGG 0.540242 tig0007105:+68551 None:intergenic
TAACTAATAAGTTTGAAATG+AGG 0.554083 tig0007105:-67591 Msa1345120:three_prime_UTR
CAAACTGCTCATAAGACAAA+CGG 0.554300 tig0007105:+67962 None:intergenic
CATCTAAACCTGCGTCTCCA+AGG 0.554770 tig0007105:-68587 Msa1345120:CDS
GCCACATCGAGTTGCTCGAA+AGG 0.555075 tig0007105:+70105 None:intergenic
TTATTGAAAGTTGGACATTG+AGG 0.558245 tig0007105:+68471 None:intergenic
ACCACTTCCACATCTCAGCT+TGG 0.564003 tig0007105:-69087 Msa1345120:CDS
ACTTCCACATCTCAGCTTGG+AGG 0.564335 tig0007105:-69084 Msa1345120:intron
TGTAACATAGCTGCAATGTT+GGG 0.565145 tig0007105:+69123 None:intergenic
TCAATGTCTAGCTCTGGCAC+AGG 0.576331 tig0007105:-68507 Msa1345120:CDS
ATGTAACATAGCTGCAATGT+TGG 0.581127 tig0007105:+69122 None:intergenic
GCTCAGTAGGGATGTCTCCA+AGG 0.581456 tig0007105:-69729 Msa1345120:intron
TCAGAAAGAGCAGCCTGGAG+AGG 0.582682 tig0007105:+69958 None:intergenic
GCGTGTTGACACGTGTTGAA+AGG 0.583885 tig0007105:+70061 None:intergenic
TACAGTGAGGAAGCTCAGTA+GGG 0.584079 tig0007105:-69741 Msa1345120:CDS
TCCAAGCTGAGATGTGGAAG+TGG 0.584301 tig0007105:+69086 None:intergenic
ATCGAGTTGCTCGAAAGGAT+CGG 0.586114 tig0007105:+70110 None:intergenic
GCATGGCGCCTTGGAGACGC+AGG 0.586987 tig0007105:+68579 None:intergenic
GAAACAATAGGAGGTGAACC+AGG 0.588601 tig0007105:+68633 None:intergenic
GCTAGACATTGAACCAGTAG+AGG 0.593995 tig0007105:+68518 None:intergenic
TGCAGGAAATTCCTTTGCAG+AGG 0.596634 tig0007105:-68914 Msa1345120:CDS
TCCTTTCGAGCAACTCGATG+TGG 0.598793 tig0007105:-70106 Msa1345120:CDS
CAATTTGAAGGGAAACCGCA+TGG 0.598917 tig0007105:+68562 None:intergenic
AGTACCTCCAAGCTGAGATG+TGG 0.600275 tig0007105:+69080 None:intergenic
AGAGAAGAACATGTTGGTGG+CGG 0.608636 tig0007105:-70187 Msa1345120:exon
AGCAAGTGCAAGCTTATCGG+CGG 0.608654 tig0007105:+69933 None:intergenic
GCAGAGGATCGTCAATCAGA+TGG 0.614191 tig0007105:-68898 Msa1345120:intron
ACTTATGCAATCACTTCAAG+AGG 0.616703 tig0007105:-69589 Msa1345120:CDS
AAGAGAGAAGAACATGTTGG+TGG 0.623218 tig0007105:-70190 Msa1345120:exon
TGATTGACGATCCTCTGCAA+AGG 0.623637 tig0007105:+68903 None:intergenic
GACACGTGTTGAAAGGGCAA+TGG 0.633302 tig0007105:+70068 None:intergenic
TGCGTCTCCAAGGCGCCATG+CGG 0.654382 tig0007105:-68577 Msa1345120:CDS
ACGTGTTGAAAGGGCAATGG+AGG 0.665793 tig0007105:+70071 None:intergenic
ACAGATGCAGAAACAATAGG+AGG 0.674096 tig0007105:+68624 None:intergenic
GCAACTCCTCGGGAATATCG+AGG 0.680265 tig0007105:+70148 None:intergenic
ATTGGAACGTGATAAGACAA+TGG 0.689309 tig0007105:+70316 None:intergenic
TTCAAACCTCGATATTCCCG+AGG 0.693018 tig0007105:-70154 Msa1345120:CDS
AGTTGCTCGAAAGGATCGGA+CGG 0.696761 tig0007105:+70114 None:intergenic
ATGTTGGTGGCGGAATTGAG+TGG 0.699161 tig0007105:-70177 Msa1345120:CDS
GAACCAGGAGGACTAATGCG+AGG 0.700895 tig0007105:+68648 None:intergenic
CTTCACTTTCTAGTACAGTG+AGG 0.701338 tig0007105:-69754 Msa1345120:CDS
TGCATTGAAGAAGATCTAGG+TGG 0.725090 tig0007105:+68952 None:intergenic
ACAATAGGAGGTGAACCAGG+AGG 0.746649 tig0007105:+68636 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTATTATTTATTAATAAA+TGG - tig0007105:68452-68471 Msa1345120:intron 0.0%
!! ATTATTATTTATTAATAAAT+GGG - tig0007105:68453-68472 Msa1345120:intron 0.0%
!!! TCTTAAATTTTAATTTGTTT+TGG - tig0007105:68093-68112 Msa1345120:intron 10.0%
!! ATGAATTAGTTAAAAAAATA+AGG - tig0007105:68537-68556 Msa1345120:CDS 10.0%
!!! AAATTATATGCAATTAATTT+TGG + tig0007105:68920-68939 None:intergenic 10.0%
!! GTATATATGTATATAAATTA+AGG - tig0007105:69514-69533 Msa1345120:intron 10.0%
!!! TTATGATTTTATTCATAGTT+TGG + tig0007105:67642-67661 None:intergenic 15.0%
!!! TTTTTCTACTTTCTTTTAAT+TGG + tig0007105:67705-67724 None:intergenic 15.0%
!!! ATTTGCATGAAATTTTTATT+TGG - tig0007105:68059-68078 Msa1345120:intron 15.0%
!!! AATTTTCATTTTAGTAAATG+AGG - tig0007105:68242-68261 Msa1345120:intron 15.0%
!! AAATATTAATAACAACTTAC+AGG + tig0007105:68364-68383 None:intergenic 15.0%
!! ATTAATTAAACCAAAACTAA+TGG + tig0007105:68636-68655 None:intergenic 15.0%
!!! CAATTAAGCATTTTAAAAAA+TGG + tig0007105:68673-68692 None:intergenic 15.0%
!! ATTAGATGATTAATGATATT+TGG + tig0007105:69050-69069 None:intergenic 15.0%
!! ATTAATCATCTAATTAATAC+AGG - tig0007105:69056-69075 Msa1345120:intron 15.0%
!!! TTAATTATAAGTGTCTATTT+TGG + tig0007105:69119-69138 None:intergenic 15.0%
!! AACAAATAATTATTGAAAGT+TGG + tig0007105:69457-69476 None:intergenic 15.0%
!! TATATGATCACTTTAATTAA+TGG - tig0007105:69490-69509 Msa1345120:intron 15.0%
!! GAGGTTAATTAATGTTATAA+TGG - tig0007105:68261-68280 Msa1345120:intron 20.0%
!! TTAATATGAATATATGCAGT+TGG - tig0007105:68288-68307 Msa1345120:intron 20.0%
!!! TTAAGCATTTTAAAAAATGG+AGG + tig0007105:68670-68689 None:intergenic 20.0%
!! ATTCAAATATAGTTAACAAG+AGG - tig0007105:68728-68747 Msa1345120:intron 20.0%
!! ACAAATGTTACCATAAAAAA+GGG + tig0007105:70057-70076 None:intergenic 20.0%
!! TACAAATGTTACCATAAAAA+AGG + tig0007105:70058-70077 None:intergenic 20.0%
!! ATTAACATGTAAATCATAGT+TGG + tig0007105:70269-70288 None:intergenic 20.0%
!! ATTAGTTATTATTACAGTCA+TGG + tig0007105:70313-70332 None:intergenic 20.0%
!!! TAACTAATAAGTTTGAAATG+AGG - tig0007105:70325-70344 Msa1345120:five_prime_UTR 20.0%
!! ATTTTATTCATAGTTTGGAG+AGG + tig0007105:67637-67656 None:intergenic 25.0%
! TTAATTTAGAAAACGGTTCA+CGG + tig0007105:68029-68048 None:intergenic 25.0%
! AAATTTCATGCAAATTGAAC+CGG + tig0007105:68054-68073 None:intergenic 25.0%
! GAGATTGTGTAAATTGTTAT+AGG - tig0007105:68118-68137 Msa1345120:intron 25.0%
!!! TTAGACTTACTTTTTTCAGT+AGG - tig0007105:68481-68500 Msa1345120:CDS 25.0%
!!! TAGACTTACTTTTTTCAGTA+GGG - tig0007105:68482-68501 Msa1345120:CDS 25.0%
!! GTACAAAGTTCAAATTTTCT+TGG - tig0007105:68593-68612 Msa1345120:CDS 25.0%
!! TTATTTTCCAAAAATGTAGC+TGG - tig0007105:69184-69203 Msa1345120:intron 25.0%
! CATTCAATAAATGATGTATG+TGG - tig0007105:69737-69756 Msa1345120:CDS 25.0%
! AAACATGTAGAAATAAGTGA+AGG + tig0007105:69920-69939 None:intergenic 25.0%
!!! TCTACATGTTTGTTATCATT+AGG - tig0007105:69929-69948 Msa1345120:CDS 25.0%
!!! TGCATTTTTAGCAAATGTTA+AGG - tig0007105:69978-69997 Msa1345120:CDS 25.0%
! CAAATGTTACCATAAAAAAG+GGG + tig0007105:70056-70075 None:intergenic 25.0%
! AATTTCACAAACACAACAAA+AGG + tig0007105:70104-70123 None:intergenic 25.0%
! GATCTGTATACTATATTTGA+AGG - tig0007105:70173-70192 Msa1345120:CDS 25.0%
AAAAAGAGAGAAGAACATGT+TGG - tig0007105:67723-67742 Msa1345120:CDS 30.0%
TAATTTAGAAAACGGTTCAC+GGG + tig0007105:68028-68047 None:intergenic 30.0%
! ACCGTTTTCTAAATTAAACC+CGG - tig0007105:68032-68051 Msa1345120:intron 30.0%
! ACCGGGTTTAATTTAGAAAA+CGG + tig0007105:68036-68055 None:intergenic 30.0%
AATTTCATGCAAATTGAACC+GGG + tig0007105:68053-68072 None:intergenic 30.0%
GTTATAGGAGAAATTGTTGA+AGG - tig0007105:68133-68152 Msa1345120:intron 30.0%
AAACCAAATTATTTGCACCT+TGG + tig0007105:68207-68226 None:intergenic 30.0%
ATATGAATATATGCAGTTGG+AGG - tig0007105:68291-68310 Msa1345120:intron 30.0%
!! CGTAAAATGACCATTAGTTT+TGG - tig0007105:68623-68642 Msa1345120:CDS 30.0%
! TTGACATGTAACATGGTTTT+TGG - tig0007105:68753-68772 Msa1345120:intron 30.0%
TGTTCCAAATGAAAAGAACA+TGG - tig0007105:68893-68912 Msa1345120:intron 30.0%
TTATTGAAAGTTGGACATTG+AGG + tig0007105:69448-69467 None:intergenic 30.0%
! CTTTTGCTTATAATAGTGAC+CGG - tig0007105:69811-69830 Msa1345120:intron 30.0%
AAGTGAAGGATTCAAAAGTT+AGG + tig0007105:69906-69925 None:intergenic 30.0%
!!! GTATACAGATCTTTGTTTTC+TGG + tig0007105:70164-70183 None:intergenic 30.0%
ATTGGAACGTGATAAGACAA+TGG + tig0007105:67603-67622 None:intergenic 35.0%
TCTCCAAGGTGCAAATAATT+TGG - tig0007105:68201-68220 Msa1345120:intron 35.0%
ACTTATGCAATCACTTCAAG+AGG - tig0007105:68327-68346 Msa1345120:intron 35.0%
AGAGGATTTGACATGTAACA+TGG - tig0007105:68746-68765 Msa1345120:intron 35.0%
!!! TGTAACATGGTTTTTGGTGT+AGG - tig0007105:68759-68778 Msa1345120:intron 35.0%
!!! GTAACATGGTTTTTGGTGTA+GGG - tig0007105:68760-68779 Msa1345120:intron 35.0%
TGTAACATAGCTGCAATGTT+GGG + tig0007105:68796-68815 None:intergenic 35.0%
ATGTAACATAGCTGCAATGT+TGG + tig0007105:68797-68816 None:intergenic 35.0%
! TGGACCATGTTCTTTTCATT+TGG + tig0007105:68900-68919 None:intergenic 35.0%
GTTTGCATTGAAGAAGATCT+AGG + tig0007105:68970-68989 None:intergenic 35.0%
! ATTTCCTGCATCAGAAGTAT+TGG + tig0007105:68992-69011 None:intergenic 35.0%
GATACAGATGCAGAAACAAT+AGG + tig0007105:69298-69317 None:intergenic 35.0%
AGAAGTCCTGTCAATTTGAA+GGG + tig0007105:69368-69387 None:intergenic 35.0%
AAGAAGTCCTGTCAATTTGA+AGG + tig0007105:69369-69388 None:intergenic 35.0%
! TCTTCAATGTTTTCCTCTAC+TGG - tig0007105:69385-69404 Msa1345120:intron 35.0%
CCTTTGCTTATAATAGTGAC+CGG + tig0007105:69702-69721 None:intergenic 35.0%
CAAACTGCTCATAAGACAAA+CGG + tig0007105:69957-69976 None:intergenic 35.0%
TTCCCACAAACAAACAAAAG+AGG - tig0007105:70008-70027 Msa1345120:CDS 35.0%
!! CACCTCTTTTGTTTGTTTGT+GGG + tig0007105:70013-70032 None:intergenic 35.0%
!! TCACCTCTTTTGTTTGTTTG+TGG + tig0007105:70014-70033 None:intergenic 35.0%
TGTTGTGTTTGTGAAATTGC+AGG - tig0007105:70106-70125 Msa1345120:CDS 35.0%
AAGAAAGCTGATGAGATCTT+TGG - tig0007105:70137-70156 Msa1345120:CDS 35.0%
AGAAAGCTGATGAGATCTTT+GGG - tig0007105:70138-70157 Msa1345120:CDS 35.0%
GTAGAGGAAATATCAGGTAT+TGG + tig0007105:70231-70250 None:intergenic 35.0%
GAAAAAAGAAGCTGAAGTAG+AGG + tig0007105:70247-70266 None:intergenic 35.0%
AAGAGAGAAGAACATGTTGG+TGG - tig0007105:67726-67745 Msa1345120:CDS 40.0%
GTAGAGCAGAAACTTCTGAT+TGG + tig0007105:67882-67901 None:intergenic 40.0%
TTCAGCAAGTGCAAGCTTAT+CGG + tig0007105:67989-68008 None:intergenic 40.0%
! TGCACTTGCTGAACAAGATA+AGG - tig0007105:67996-68015 Msa1345120:intron 40.0%
! CTTCACTTTCTAGTACAGTG+AGG - tig0007105:68162-68181 Msa1345120:intron 40.0%
TGCAGCTATGTTACATAGTC+AGG - tig0007105:68801-68820 Msa1345120:intron 40.0%
TGCATTGAAGAAGATCTAGG+TGG + tig0007105:68967-68986 None:intergenic 40.0%
CAAACCAATACTTCTGATGC+AGG - tig0007105:68985-69004 Msa1345120:intron 40.0%
! TACAGGTCCAGCTACATTTT+TGG + tig0007105:69194-69213 None:intergenic 40.0%
GATGATGCTTGAGATCTTAC+AGG + tig0007105:69211-69230 None:intergenic 40.0%
ACAGATGCAGAAACAATAGG+AGG + tig0007105:69295-69314 None:intergenic 40.0%
GCAGGTTTAGATGTTCTTGA+TGG + tig0007105:69322-69341 None:intergenic 40.0%
TGCTTAACATATACTCCCTC+CGG - tig0007105:69680-69699 Msa1345120:intron 40.0%
TGCTTATAATAGTGACCGGA+GGG + tig0007105:69815-69834 None:intergenic 40.0%
TTGCTTATAATAGTGACCGG+AGG + tig0007105:69814-69833 None:intergenic 40.0%
CCGGTCACTATTATAAGCAA+AGG - tig0007105:69699-69718 Msa1345120:intron 40.0%
TGCTTATAATAGTGACCGGA+TGG - tig0007105:69815-69834 Msa1345120:intron 40.0%
GATAGCGCACTTGTTTAATC+TGG - tig0007105:69845-69864 Msa1345120:intron 40.0%
GCACTTGTTTAATCTGGTAG+TGG - tig0007105:69851-69870 Msa1345120:intron 40.0%
CGTTTGTCTTATGAGCAGTT+TGG - tig0007105:69955-69974 Msa1345120:CDS 40.0%
!!! GTATCTCGTCCCCTTTTTTA+TGG - tig0007105:70044-70063 Msa1345120:CDS 40.0%
GCTGAAGTAGAGGAAATATC+AGG + tig0007105:70237-70256 None:intergenic 40.0%
! AGAGAAGAACATGTTGGTGG+CGG - tig0007105:67729-67748 Msa1345120:CDS 45.0%
TTCAAACCTCGATATTCCCG+AGG - tig0007105:67762-67781 Msa1345120:CDS 45.0%
TAGAACTTGCAGCAACTCCT+CGG + tig0007105:67782-67801 None:intergenic 45.0%
! ATCGAGTTGCTCGAAAGGAT+CGG + tig0007105:67809-67828 None:intergenic 45.0%
! CGTGTTGACACGTGTTGAAA+GGG + tig0007105:67857-67876 None:intergenic 45.0%
TGCCAAAAAAGACGAGCTCA+TGG - tig0007105:67912-67931 Msa1345120:CDS 45.0%
!!! TGCCATGAGCTCGTCTTTTT+TGG + tig0007105:67917-67936 None:intergenic 45.0%
TACAGTGAGGAAGCTCAGTA+GGG - tig0007105:68175-68194 Msa1345120:intron 45.0%
! GCAGTTGGAGGTTTTCAGAA+AGG - tig0007105:68303-68322 Msa1345120:intron 45.0%
TGCAGGAAATTCCTTTGCAG+AGG - tig0007105:69002-69021 Msa1345120:intron 45.0%
TGATTGACGATCCTCTGCAA+AGG + tig0007105:69016-69035 None:intergenic 45.0%
AATGCGAGGAGTCGTAGTTT+GGG + tig0007105:69257-69276 None:intergenic 45.0%
TAATGCGAGGAGTCGTAGTT+TGG + tig0007105:69258-69277 None:intergenic 45.0%
GAAACAATAGGAGGTGAACC+AGG + tig0007105:69286-69305 None:intergenic 45.0%
CAATTTGAAGGGAAACCGCA+TGG + tig0007105:69357-69376 None:intergenic 45.0%
CGGTTTCCCTTCAAATTGAC+AGG - tig0007105:69359-69378 Msa1345120:intron 45.0%
GCTAGACATTGAACCAGTAG+AGG + tig0007105:69401-69420 None:intergenic 45.0%
! ACTGGTTCAATGTCTAGCTC+TGG - tig0007105:69403-69422 Msa1345120:intron 45.0%
TTCTTGTCTCAGCACGAACT+CGG - tig0007105:69574-69593 Msa1345120:intron 45.0%
TTCTTTCGCCAAGTCAGGTA+AGG - tig0007105:69612-69631 Msa1345120:CDS 45.0%
TCTTTCGCCAAGTCAGGTAA+GGG - tig0007105:69613-69632 Msa1345120:intron 45.0%
AAAGGGGACGAGATACATGA+GGG + tig0007105:70040-70059 None:intergenic 45.0%
AAAAGGGGACGAGATACATG+AGG + tig0007105:70041-70060 None:intergenic 45.0%
!!! AAATTAATATTTTTTAATAG+AGG - tig0007105:68416-68435 Msa1345120:intron 5.0%
!! AATATAATAATTACAATATT+TGG - tig0007105:68560-68579 Msa1345120:CDS 5.0%
!! TATATATGTATATAAATTAA+GGG - tig0007105:69515-69534 Msa1345120:intron 5.0%
! GGAGAGGAATGCAGAAGCAT+TGG + tig0007105:67621-67640 None:intergenic 50.0%
!! ATGTTGGTGGCGGAATTGAG+TGG - tig0007105:67739-67758 Msa1345120:CDS 50.0%
AGAACTTGCAGCAACTCCTC+GGG + tig0007105:67781-67800 None:intergenic 50.0%
AGTTGCTCGAAAGGATCGGA+CGG + tig0007105:67805-67824 None:intergenic 50.0%
TCCTTTCGAGCAACTCGATG+TGG - tig0007105:67810-67829 Msa1345120:intron 50.0%
ACGTGTTGAAAGGGCAATGG+AGG + tig0007105:67848-67867 None:intergenic 50.0%
GACACGTGTTGAAAGGGCAA+TGG + tig0007105:67851-67870 None:intergenic 50.0%
! GCGTGTTGACACGTGTTGAA+AGG + tig0007105:67858-67877 None:intergenic 50.0%
AGCAAGTGCAAGCTTATCGG+CGG + tig0007105:67986-68005 None:intergenic 50.0%
GTACAGTGAGGAAGCTCAGT+AGG - tig0007105:68174-68193 Msa1345120:intron 50.0%
!!! TGGTTTTTGGTGTAGGGAGC+AGG - tig0007105:68766-68785 Msa1345120:intron 50.0%
ACCACTTCCACATCTCAGCT+TGG - tig0007105:68829-68848 Msa1345120:intron 50.0%
TCCAAGCTGAGATGTGGAAG+TGG + tig0007105:68833-68852 None:intergenic 50.0%
ACTTCCACATCTCAGCTTGG+AGG - tig0007105:68832-68851 Msa1345120:intron 50.0%
AGTACCTCCAAGCTGAGATG+TGG + tig0007105:68839-68858 None:intergenic 50.0%
GCAGAGGATCGTCAATCAGA+TGG - tig0007105:69018-69037 Msa1345120:intron 50.0%
ACAATAGGAGGTGAACCAGG+AGG + tig0007105:69283-69302 None:intergenic 50.0%
CATCTAAACCTGCGTCTCCA+AGG - tig0007105:69329-69348 Msa1345120:intron 50.0%
!! TCAATGTCTAGCTCTGGCAC+AGG - tig0007105:69409-69428 Msa1345120:intron 50.0%
TCTTGTCTCAGCACGAACTC+GGG - tig0007105:69575-69594 Msa1345120:CDS 50.0%
AGGAGTTCTTTCGCCAAGTC+AGG - tig0007105:69607-69626 Msa1345120:CDS 50.0%
CCAAAGACCCTTACCTGACT+TGG + tig0007105:69623-69642 None:intergenic 50.0%
CCAAGTCAGGTAAGGGTCTT+TGG - tig0007105:69620-69639 Msa1345120:intron 50.0%
GCGCTATCACTTACTCCATC+CGG + tig0007105:69833-69852 None:intergenic 50.0%
GCAACTCCTCGGGAATATCG+AGG + tig0007105:67771-67790 None:intergenic 55.0%
! GCCACATCGAGTTGCTCGAA+AGG + tig0007105:67814-67833 None:intergenic 55.0%
TCAGAAAGAGCAGCCTGGAG+AGG + tig0007105:67961-67980 None:intergenic 55.0%
GCTCAGTAGGGATGTCTCCA+AGG - tig0007105:68187-68206 Msa1345120:intron 55.0%
ACTCCTCGCATTAGTCCTCC+TGG - tig0007105:69265-69284 Msa1345120:intron 55.0%
GAACCAGGAGGACTAATGCG+AGG + tig0007105:69271-69290 None:intergenic 55.0%
ACGAACTCGGGTGGATGGAA+AGG - tig0007105:69587-69606 Msa1345120:CDS 55.0%
AGACGAGCTCATGGCAGAGC+TGG - tig0007105:67921-67940 Msa1345120:CDS 60.0%
CATGGCAGAGCTGGAAGCTC+AGG - tig0007105:67930-67949 Msa1345120:CDS 60.0%
CGGCTTCAGAAAGAGCAGCC+TGG + tig0007105:67966-67985 None:intergenic 60.0%
TGTCTCAGCACGAACTCGGG+TGG - tig0007105:69578-69597 Msa1345120:CDS 60.0%
TCAGCACGAACTCGGGTGGA+TGG - tig0007105:69582-69601 Msa1345120:CDS 60.0%
AGCTCAGGCAGAGCCTCTCC+AGG - tig0007105:67945-67964 Msa1345120:CDS 65.0%
! TGCGTCTCCAAGGCGCCATG+CGG - tig0007105:69339-69358 Msa1345120:intron 65.0%
AGGGAAACCGCATGGCGCCT+TGG + tig0007105:69349-69368 None:intergenic 65.0%
GCATGGCGCCTTGGAGACGC+AGG + tig0007105:69340-69359 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0007105 gene 67571 70367 67571 ID=Msa1345120;Name=Msa1345120
tig0007105 mRNA 67571 70367 67571 ID=Msa1345120-mRNA-1;Parent=Msa1345120;Name=Msa1345120-mRNA-1;_AED=0.11;_eAED=0.11;_QI=168|0.85|0.87|1|1|1|8|147|337
tig0007105 exon 67571 67810 67571 ID=Msa1345120-mRNA-1:exon:4877;Parent=Msa1345120-mRNA-1
tig0007105 exon 67909 67987 67909 ID=Msa1345120-mRNA-1:exon:4876;Parent=Msa1345120-mRNA-1
tig0007105 exon 68465 68735 68465 ID=Msa1345120-mRNA-1:exon:4875;Parent=Msa1345120-mRNA-1
tig0007105 exon 68899 68991 68899 ID=Msa1345120-mRNA-1:exon:4874;Parent=Msa1345120-mRNA-1
tig0007105 exon 69085 69157 69085 ID=Msa1345120-mRNA-1:exon:4873;Parent=Msa1345120-mRNA-1
tig0007105 exon 69575 69631 69575 ID=Msa1345120-mRNA-1:exon:4872;Parent=Msa1345120-mRNA-1
tig0007105 exon 69730 69798 69730 ID=Msa1345120-mRNA-1:exon:4871;Parent=Msa1345120-mRNA-1
tig0007105 exon 69921 70367 69921 ID=Msa1345120-mRNA-1:exon:4870;Parent=Msa1345120-mRNA-1
tig0007105 five_prime_UTR 70200 70367 70200 ID=Msa1345120-mRNA-1:five_prime_utr;Parent=Msa1345120-mRNA-1
tig0007105 CDS 69921 70199 69921 ID=Msa1345120-mRNA-1:cds;Parent=Msa1345120-mRNA-1
tig0007105 CDS 69730 69798 69730 ID=Msa1345120-mRNA-1:cds;Parent=Msa1345120-mRNA-1
tig0007105 CDS 69575 69631 69575 ID=Msa1345120-mRNA-1:cds;Parent=Msa1345120-mRNA-1
tig0007105 CDS 69085 69157 69085 ID=Msa1345120-mRNA-1:cds;Parent=Msa1345120-mRNA-1
tig0007105 CDS 68899 68991 68899 ID=Msa1345120-mRNA-1:cds;Parent=Msa1345120-mRNA-1
tig0007105 CDS 68465 68735 68465 ID=Msa1345120-mRNA-1:cds;Parent=Msa1345120-mRNA-1
tig0007105 CDS 67909 67987 67909 ID=Msa1345120-mRNA-1:cds;Parent=Msa1345120-mRNA-1
tig0007105 CDS 67718 67810 67718 ID=Msa1345120-mRNA-1:cds;Parent=Msa1345120-mRNA-1
tig0007105 three_prime_UTR 67571 67717 67571 ID=Msa1345120-mRNA-1:three_prime_utr;Parent=Msa1345120-mRNA-1
Gene Sequence

>Msa1345120

ATGTTGGTGGCGGAATTGAGTGGTTCAAACCTCGATATTCCCGAGGAGTTGCTGCAAGTTCTACCGTCCGATCCTTTCGAGCAACTCGATGTGGCTCGCAAAATCACCTCCATTGCCCTTTCAACACGTGTCAACACGCTCCAATCAGAAGTTTCTGCTCTACGTGATGAGCTTGCCAAAAAAGACGAGCTCATGGCAGAGCTGGAAGCTCAGGCAGAGCCTCTCCAGGCTGCTCTTTCTGAAGCCGCCGATAAGCTTGCACTTGCTGAACAAGATAAGGAGAAATTGTTGAAGGAGAATGCTTCACTTTCTAGTACAGTGAGGAAGCTCAGTAGGGATGTCTCCAAGTTGGAGGTTTTCAGAAAGGCACTTATGCAATCACTTCAAGAGGATGAAGAAAAACCTGGAGCAGGATCACCCAACATTGCAGCTATGTTACATAGTCAGGCAAGTACCACTTCCACATCTCAGCTTGGAGATGAAGATGCTTCATTGCCACCTAGATCTTCTTCAATGCAAACCAATACTTCTGATGCAGGAAATTCCTTTGCAGAGGATCGTCAATCAGATGCTGGACCTGTAAGATCTCAAGCATCATCATCACATAATATTTTGTTAGCATCCCAAACTACGACTCCTCGCATTAGTCCTCCTGGTTCACCTCCTATTGTTTCTGCATCTGTATCACCATCAAGAACATCTAAACCTGCGTCTCCAAGGCGCCATGCGGTTTCCCTTCAAATTGACAGGACTTCTTCAATGTTTTCCTCTACTGGTTCAATGTCTAGCTCTGGCACAGGTTTCTGCATGCTACCTCAATGTCCAACTTTCAATAATTATTTGAGCCGTTTGTCTTATGAGCAGTTTGGTGCATTTTTAGCAAATGTTAAGGAACTGAATTCCCACAAACAAACAAAAGAGGAGACACTAAAGAAAGCTGATGAGATCTTTGGGCCAGAAAACAAAGATCTGTATACTATATTTGAAGGATTGATTAGTCGCAATGTTCATTAA

Protein sequence

>Msa1345120

MLVAELSGSNLDIPEELLQVLPSDPFEQLDVARKITSIALSTRVNTLQSEVSALRDELAKKDELMAELEAQAEPLQAALSEAADKLALAEQDKEKLLKENASLSSTVRKLSRDVSKLEVFRKALMQSLQEDEEKPGAGSPNIAAMLHSQASTTSTSQLGDEDASLPPRSSSMQTNTSDAGNSFAEDRQSDAGPVRSQASSSHNILLASQTTTPRISPPGSPPIVSASVSPSRTSKPASPRRHAVSLQIDRTSSMFSSTGSMSSSGTGFCMLPQCPTFNNYLSRLSYEQFGAFLANVKELNSHKQTKEETLKKADEIFGPENKDLYTIFEGLISRNVH*