AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0687620


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0687620 MtrunA17_Chr4g0038211 100.000 215 0 0 1 215 182 396 9.95e-157 439
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0687620 AT5G23120.1 90.698 215 20 0 1 215 189 403 3.07e-143 405
Msa0687620 AT5G23120.2 90.698 215 20 0 1 215 212 426 3.99e-143 406

Find 100 sgRNAs with CRISPR-Local

Find 335 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAATATGGTTTGTTCAAAT+TGG 0.178483 4_4:-52520973 None:intergenic
CATGATTTGTAATAGAAATA+TGG 0.219424 4_4:-52520987 None:intergenic
TTTGAATTTGTGTTGTAAAA+TGG 0.230624 4_4:+52521048 Msa0687620:five_prime_UTR
TCCCATGTTCTGGATTCTTC+TGG 0.285677 4_4:-52522846 None:intergenic
CAATTGGAAGGCTGCTGTTC+AGG 0.287529 4_4:+52521709 Msa0687620:CDS
TACTTAGGTGAGTTATTTAC+AGG 0.289326 4_4:-52526090 None:intergenic
GGGGACGAGGCAAACCCTTT+TGG 0.313718 4_4:+52521101 Msa0687620:five_prime_UTR
CAGCTCTCCATCCCATGTTC+TGG 0.319178 4_4:-52522856 None:intergenic
CAGTGTCGGCTACTCTTAAT+AGG 0.333230 4_4:+52521735 Msa0687620:CDS
CCGCTCAGTGCTGAACTTCC+TGG 0.336143 4_4:+52521297 Msa0687620:five_prime_UTR
GACAAGAAGGGATTTGTATT+GGG 0.359279 4_4:+52525040 Msa0687620:CDS
CCAATTGTATCCTCTGTTTG+AGG 0.361796 4_4:-52521693 None:intergenic
TCCTGATGCTGGAGAGAGTT+GGG 0.369099 4_4:+52521266 Msa0687620:five_prime_UTR
TGCTGAACTTCCTGGCGATA+TGG 0.370530 4_4:+52521305 Msa0687620:exon
CAGGACGAGGCTTGGGCAGC+AGG 0.377236 4_4:+52524075 Msa0687620:intron
TGACAAGAAGGGATTTGTAT+TGG 0.379966 4_4:+52525039 Msa0687620:CDS
TTAGTATTGAAGAGAGCTAT+TGG 0.383191 4_4:+52525831 Msa0687620:three_prime_UTR
GGAGAGCTGATGGTGGTCTC+TGG 0.387735 4_4:+52522870 Msa0687620:CDS
GGAGTGTACAATAGAATTGC+AGG 0.392250 4_4:-52521246 None:intergenic
CTAAAGATGGTGGAAGAACT+TGG 0.399326 4_4:+52521127 Msa0687620:five_prime_UTR
ATTCTCTTGAGAACTAATAA+TGG 0.408224 4_4:+52524108 Msa0687620:CDS
TCCCAACTCTCTCCAGCATC+AGG 0.409768 4_4:-52521267 None:intergenic
GGATTTGTATTGGGAAATGA+TGG 0.410591 4_4:+52525049 Msa0687620:CDS
CACCATCTTTAGTCTCCAAA+AGG 0.415846 4_4:-52521116 None:intergenic
CATGACCTGGGAGCCTGGTC+AGG 0.417923 4_4:+52522210 Msa0687620:CDS
GATATATTGCTGAAGTACTT+AGG 0.426205 4_4:-52526105 None:intergenic
GCAGATAACTGAAGAGTTTG+AGG 0.428888 4_4:+52523602 Msa0687620:intron
CCTGTTCAAAGCCGAGGGTT+CGG 0.431022 4_4:+52523630 Msa0687620:CDS
CCGAACCCTCGGCTTTGAAC+AGG 0.435583 4_4:-52523630 None:intergenic
TTTAATTCTATCAGCTTCAA+AGG 0.439570 4_4:+52521198 Msa0687620:five_prime_UTR
GAATGTGCAGGTATACATAA+AGG 0.445622 4_4:+52521616 Msa0687620:intron
ATGGATACAGGACGAGGCTT+GGG 0.449840 4_4:+52524068 Msa0687620:intron
CCTCAAACAGAGGATACAAT+TGG 0.450180 4_4:+52521693 Msa0687620:CDS
ACAGTTTCTAGTGGTATTAG+TGG 0.451172 4_4:+52522100 Msa0687620:CDS
TTCTACATGACCTGGGAGCC+TGG 0.456770 4_4:+52522205 Msa0687620:CDS
GGTCTCTGGCTTCTTGTTCG+TGG 0.472681 4_4:+52522884 Msa0687620:CDS
GCTTGGGCAGCAGGTGGCAG+TGG 0.472705 4_4:+52524084 Msa0687620:CDS
GGAGTCTTGCTTCGCTACCT+TGG 0.483417 4_4:+52525070 Msa0687620:CDS
TATGGATACAGGACGAGGCT+TGG 0.491666 4_4:+52524067 Msa0687620:intron
TTAATTCTATCAGCTTCAAA+GGG 0.492876 4_4:+52521199 Msa0687620:five_prime_UTR
CCTCACCTGACCAGGCTCCC+AGG 0.496515 4_4:-52522215 None:intergenic
CTGGCAACTGCTCTGTTATG+TGG 0.499429 4_4:-52522827 None:intergenic
GGTTCGGCATTCTTGATGTC+GGG 0.503991 4_4:+52523646 Msa0687620:CDS
CTAATAATGGTGGCAAGTCA+TGG 0.505941 4_4:+52524121 Msa0687620:CDS
ATCAGCTTCAAAGGGAAAGA+AGG 0.507563 4_4:+52521207 Msa0687620:five_prime_UTR
CTATTGTACACTCCTGATGC+TGG 0.512463 4_4:+52521255 Msa0687620:five_prime_UTR
AGTGGTGCAAGCTATTACAC+TGG 0.515102 4_4:+52522118 Msa0687620:CDS
TTTGTGTTGTAAAATGGAAA+CGG 0.519374 4_4:+52521054 Msa0687620:five_prime_UTR
GGGTTCGGCATTCTTGATGT+CGG 0.521429 4_4:+52523645 Msa0687620:CDS
ACCATCTTTAGTCTCCAAAA+GGG 0.524391 4_4:-52521115 None:intergenic
AGTAAAAGCCTCACCTGACC+AGG 0.530594 4_4:-52522223 None:intergenic
CAGGTTCATTGATGACAAGA+AGG 0.533069 4_4:+52525027 Msa0687620:intron
CTCCTGATGCTGGAGAGAGT+TGG 0.533505 4_4:+52521265 Msa0687620:five_prime_UTR
GATAGAGCTTTAATTTAGCA+TGG 0.534142 4_4:+52525092 Msa0687620:exon
TAATGAGAAGAGCGCGGAGA+TGG 0.535243 4_4:+52521643 Msa0687620:CDS
GCTCTCTTCAATACTAAGCA+TGG 0.539098 4_4:-52525825 None:intergenic
CATCAAGAATGCCGAACCCT+CGG 0.540289 4_4:-52523641 None:intergenic
AAATGGAAACGGATTTGTCC+TGG 0.542361 4_4:+52521065 Msa0687620:five_prime_UTR
CTCTTCAGAACAGTTTCTAG+TGG 0.545286 4_4:+52522091 Msa0687620:intron
AAATCTTCATCTTCTGCGGA+TGG 0.551204 4_4:-52521165 None:intergenic
GTTAAAATCTTCATCTTCTG+CGG 0.555309 4_4:-52521169 None:intergenic
AGCCTAGTGCATAGCTTCAA+CGG 0.558162 4_4:+52526011 Msa0687620:three_prime_UTR
GAAGAATCCAGAACATGGGA+TGG 0.558266 4_4:+52522849 Msa0687620:CDS
AGCATGTATACCATATCGCC+AGG 0.562377 4_4:-52521315 None:intergenic
GCGGAGATGGTGACTGATGA+AGG 0.562743 4_4:+52521656 Msa0687620:CDS
TGCCAGAAGAATCCAGAACA+TGG 0.568338 4_4:+52522844 Msa0687620:CDS
CTAAATTAAAGCTCTATCCA+AGG 0.575896 4_4:-52525087 None:intergenic
TGTTGTCAGCAGCTTTGTCA+CGG 0.577018 4_4:-52524146 None:intergenic
ACTGCAACATACCTTCCATC+GGG 0.579159 4_4:-52522166 None:intergenic
GTGGCAACTTCTACATGACC+TGG 0.579453 4_4:+52522197 Msa0687620:CDS
ATATATGTTACCTCAAACAG+AGG 0.581515 4_4:+52521683 Msa0687620:CDS
GACTGCAACATACCTTCCAT+CGG 0.584903 4_4:-52522167 None:intergenic
GACGAGGCTTGGGCAGCAGG+TGG 0.586594 4_4:+52524078 Msa0687620:CDS
AGGTTCATTGATGACAAGAA+GGG 0.586700 4_4:+52525028 Msa0687620:intron
GCTTCAAAGGGAAAGAAGGA+TGG 0.587319 4_4:+52521211 Msa0687620:five_prime_UTR
TACCGTTGAAGCTATGCACT+AGG 0.588689 4_4:-52526013 None:intergenic
AAATTCCTGTTCAAAGCCGA+GGG 0.590036 4_4:+52523625 Msa0687620:CDS
TCCCCAGAAGAAAACCTACC+AGG 0.590188 4_4:-52521083 None:intergenic
CTCTGGCTTCTTGTTCGTGG+AGG 0.590994 4_4:+52522887 Msa0687620:CDS
GAAATTCCTGTTCAAAGCCG+AGG 0.592799 4_4:+52523624 Msa0687620:CDS
TGATGTCGGGTATCGTTCAA+CGG 0.598924 4_4:+52523659 Msa0687620:CDS
GGGAAAGAAGGATGGATCGT+GGG 0.604713 4_4:+52521219 Msa0687620:five_prime_UTR
ATTTAAATGTAATAGTAGCA+TGG 0.604825 4_4:-52525959 None:intergenic
TAAAGATGGTGGAAGAACTT+GGG 0.606864 4_4:+52521128 Msa0687620:five_prime_UTR
TCAATCGATCTCCCGATGGA+AGG 0.610839 4_4:+52522155 Msa0687620:CDS
TGCTGTTCAGGAATCAGTGT+CGG 0.620604 4_4:+52521721 Msa0687620:CDS
ATGCTGGAGAGAGTTGGGAA+AGG 0.633423 4_4:+52521271 Msa0687620:five_prime_UTR
CTCTTGAGAACTAATAATGG+TGG 0.633424 4_4:+52524111 Msa0687620:CDS
AACATGGGATGGAGAGCTGA+TGG 0.634621 4_4:+52522860 Msa0687620:CDS
GCCAGAAGAATCCAGAACAT+GGG 0.641481 4_4:+52522845 Msa0687620:CDS
AAACAGAGGATACAATTGGA+AGG 0.654671 4_4:+52521697 Msa0687620:CDS
TGGCAACTTCTACATGACCT+GGG 0.659223 4_4:+52522198 Msa0687620:CDS
TATGTTGCAGTCTCAAGTCG+TGG 0.661059 4_4:+52522178 Msa0687620:CDS
GGAAACGGATTTGTCCTGGT+AGG 0.662702 4_4:+52521069 Msa0687620:five_prime_UTR
AGGGAAAGAAGGATGGATCG+TGG 0.669551 4_4:+52521218 Msa0687620:five_prime_UTR
ACTGTCAATCGATCTCCCGA+TGG 0.671901 4_4:+52522151 Msa0687620:CDS
TCTGCGGATGGTATAGAACG+TGG 0.679981 4_4:-52521153 None:intergenic
GGCAACTAATGAGAAGAGCG+CGG 0.689314 4_4:+52521637 Msa0687620:CDS
ATGGGATGGAGAGCTGATGG+TGG 0.712985 4_4:+52522863 Msa0687620:CDS
CCAGGAAGTTCAGCACTGAG+CGG 0.727546 4_4:-52521297 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATATTATTATTAGTAGT+AGG + chr4_4:52521382-52521401 Msa0687620:intron 10.0%
!! TTGAAAATAAAATAAAATTG+AGG - chr4_4:52523540-52523559 None:intergenic 10.0%
!! TATATTCTACAAAATATTAT+CGG - chr4_4:52524400-52524419 None:intergenic 10.0%
!!! TTTAATTTTTCAATGAAAAA+TGG + chr4_4:52525749-52525768 Msa0687620:intron 10.0%
!! GATACATTAAAAATATTCTT+AGG + chr4_4:52522375-52522394 Msa0687620:intron 15.0%
!!! TTTGAGATTTATTATATATG+TGG - chr4_4:52523448-52523467 None:intergenic 15.0%
!! ATACAAAATTTGCAAAATTA+TGG + chr4_4:52524049-52524068 Msa0687620:intron 15.0%
!! TATGATACTTATGTAATTAT+CGG + chr4_4:52525395-52525414 Msa0687620:intron 15.0%
!! GAAGAAAAGAAAAAAAATTA+GGG + chr4_4:52525545-52525564 Msa0687620:intron 15.0%
!!! TTTTAATTTAATTCTATGGA+AGG - chr4_4:52525680-52525699 None:intergenic 15.0%
!! CATAGAATTAAATTAAAAGT+GGG + chr4_4:52525682-52525701 Msa0687620:intron 15.0%
!! ATAGAATTAAATTAAAAGTG+GGG + chr4_4:52525683-52525702 Msa0687620:intron 15.0%
!!! CATGATTTGTAATAGAAATA+TGG - chr4_4:52520990-52521009 None:intergenic 20.0%
!! TTTGAATTTGTGTTGTAAAA+TGG + chr4_4:52521048-52521067 Msa0687620:five_prime_UTR 20.0%
!!! AAGATGAAGATTTTAACTAT+AGG + chr4_4:52521175-52521194 Msa0687620:five_prime_UTR 20.0%
!! ATATTATTATTAGTAGTAGG+AGG + chr4_4:52521385-52521404 Msa0687620:intron 20.0%
!! TATTAATACATTTGGAAGTA+GGG + chr4_4:52521923-52521942 Msa0687620:intron 20.0%
!!! ACACTGCAAATATTTTATTT+CGG + chr4_4:52522036-52522055 Msa0687620:intron 20.0%
!!! AAATGTTTTCTTAAAAGTAG+TGG - chr4_4:52522485-52522504 None:intergenic 20.0%
!!! CTACTTTTAAGAAAACATTT+CGG + chr4_4:52522485-52522504 Msa0687620:intron 20.0%
!! ACATTAAGACATATATTACA+AGG - chr4_4:52522675-52522694 None:intergenic 20.0%
!!! TACATGTTTATTTCATTTTC+AGG + chr4_4:52522793-52522812 Msa0687620:intron 20.0%
!! AAATAAACCAAAATGAAAAG+TGG - chr4_4:52523264-52523283 None:intergenic 20.0%
!! GTAGATAAATACAATACATT+CGG - chr4_4:52523294-52523313 None:intergenic 20.0%
!! AAATAATGATAGAAGTGAAA+GGG - chr4_4:52523423-52523442 None:intergenic 20.0%
!! AAAATAATGATAGAAGTGAA+AGG - chr4_4:52523424-52523443 None:intergenic 20.0%
!!! TTGATCCATTAAATTCTTTT+TGG + chr4_4:52523469-52523488 Msa0687620:intron 20.0%
!! ATTGACCAAAAAGAATTTAA+TGG - chr4_4:52523477-52523496 None:intergenic 20.0%
!! TTTGATTGAGTATATTTAAG+TGG + chr4_4:52523769-52523788 Msa0687620:intron 20.0%
!! TATATAATAATACATGAGTG+AGG - chr4_4:52523833-52523852 None:intergenic 20.0%
!! TATGAATGTTAATACGAAAA+GGG - chr4_4:52523860-52523879 None:intergenic 20.0%
!! TTATGAATGTTAATACGAAA+AGG - chr4_4:52523861-52523880 None:intergenic 20.0%
!! ATCAGTCTTAAAAAAAACAT+TGG + chr4_4:52523939-52523958 Msa0687620:intron 20.0%
!!! CTATGGACTAAAATATAAAA+TGG + chr4_4:52524474-52524493 Msa0687620:intron 20.0%
!! AATAAAGGAAAATAAAGTAG+TGG - chr4_4:52524820-52524839 None:intergenic 20.0%
!!! CTATATTTATTTTTCATGTG+TGG - chr4_4:52524938-52524957 None:intergenic 20.0%
!! CACACATGAAAAATAAATAT+AGG + chr4_4:52524936-52524955 Msa0687620:intron 20.0%
!! CGAAGAAAAGAAAAAAAATT+AGG + chr4_4:52525544-52525563 Msa0687620:intron 20.0%
!!! CCACTTTTAATTTAATTCTA+TGG - chr4_4:52525684-52525703 None:intergenic 20.0%
!! CCATAGAATTAAATTAAAAG+TGG + chr4_4:52525681-52525700 Msa0687620:intron 20.0%
!! ATTTAAATGTAATAGTAGCA+TGG - chr4_4:52525962-52525981 None:intergenic 20.0%
!!! GAAATATGGTTTGTTCAAAT+TGG - chr4_4:52520976-52520995 None:intergenic 25.0%
! TTTGTGTTGTAAAATGGAAA+CGG + chr4_4:52521054-52521073 Msa0687620:five_prime_UTR 25.0%
! TTTAATTCTATCAGCTTCAA+AGG + chr4_4:52521198-52521217 Msa0687620:five_prime_UTR 25.0%
! TTAATTCTATCAGCTTCAAA+GGG + chr4_4:52521199-52521218 Msa0687620:five_prime_UTR 25.0%
! CAGTTGAAATGATTAATGTT+TGG - chr4_4:52521514-52521533 None:intergenic 25.0%
! GAATGCATAATGTATATGTA+TGG + chr4_4:52521808-52521827 Msa0687620:intron 25.0%
! AAAGAGTTACATTCCTTAAA+TGG - chr4_4:52521848-52521867 None:intergenic 25.0%
! GAAAGTCGTATTAATACATT+TGG + chr4_4:52521915-52521934 Msa0687620:intron 25.0%
! GTATTAATACATTTGGAAGT+AGG + chr4_4:52521922-52521941 Msa0687620:intron 25.0%
!! AGTTCTAATCAAAGAAGATT+CGG - chr4_4:52522411-52522430 None:intergenic 25.0%
! AAATGATATCTATGGCTAAA+TGG - chr4_4:52522732-52522751 None:intergenic 25.0%
!! TTTAGCCATAGATATCATTT+TGG + chr4_4:52522732-52522751 Msa0687620:intron 25.0%
! AAAAAGAAATCTATCCAGAA+GGG - chr4_4:52523009-52523028 None:intergenic 25.0%
! AAAAAAGAAATCTATCCAGA+AGG - chr4_4:52523010-52523029 None:intergenic 25.0%
! TACAGGATGTAAAACATTAT+GGG - chr4_4:52523334-52523353 None:intergenic 25.0%
!!! TTGTACATTTTCTAAGAAAG+GGG - chr4_4:52523392-52523411 None:intergenic 25.0%
!!! CTTGTACATTTTCTAAGAAA+GGG - chr4_4:52523393-52523412 None:intergenic 25.0%
!!! ACTTGTACATTTTCTAAGAA+AGG - chr4_4:52523394-52523413 None:intergenic 25.0%
!! TAAAATTTTACTGCATTCAG+AGG + chr4_4:52523682-52523701 Msa0687620:intron 25.0%
! ATGAATGTTAATACGAAAAG+GGG - chr4_4:52523859-52523878 None:intergenic 25.0%
! ATTTGCAAAATTATGGATAC+AGG + chr4_4:52524056-52524075 Msa0687620:intron 25.0%
! ATTCTCTTGAGAACTAATAA+TGG + chr4_4:52524108-52524127 Msa0687620:CDS 25.0%
! TTCTACAAAATATTATCGGT+TGG - chr4_4:52524396-52524415 None:intergenic 25.0%
! AGTGTTTATTTGTGTAAAAC+TGG + chr4_4:52524422-52524441 Msa0687620:intron 25.0%
! GGACTAAAATATAAAATGGA+TGG + chr4_4:52524478-52524497 Msa0687620:intron 25.0%
! GAAAATAAAGTAGTGGTATT+GGG - chr4_4:52524813-52524832 None:intergenic 25.0%
! ATAAATATAGGAGATTCTGA+AGG + chr4_4:52524948-52524967 Msa0687620:intron 25.0%
!! AGAGTTTGTAGAACTTTTAT+TGG + chr4_4:52524973-52524992 Msa0687620:intron 25.0%
!! TTGGTGATAAATCTTGTAAA+TGG + chr4_4:52524992-52525011 Msa0687620:intron 25.0%
!! AATGAAAAATGGAATTTTGC+AGG + chr4_4:52525760-52525779 Msa0687620:intron 25.0%
GTTAAAATCTTCATCTTCTG+CGG - chr4_4:52521172-52521191 None:intergenic 30.0%
AACTGTACAAAAGTAACTGT+TGG + chr4_4:52521529-52521548 Msa0687620:intron 30.0%
ATATATGTTACCTCAAACAG+AGG + chr4_4:52521683-52521702 Msa0687620:CDS 30.0%
GCATAATGTATATGTATGGA+TGG + chr4_4:52521812-52521831 Msa0687620:intron 30.0%
ACATTCCTTAAATGGCATTA+TGG - chr4_4:52521840-52521859 None:intergenic 30.0%
TATACTCAAGAGTAGCAATA+TGG + chr4_4:52521893-52521912 Msa0687620:intron 30.0%
!! TTGCTTGGTAGTTTTACTTT+TGG + chr4_4:52522274-52522293 Msa0687620:intron 30.0%
GTACAATTAGATAAACCACA+TGG - chr4_4:52522304-52522323 None:intergenic 30.0%
TGTGGTTTATCTAATTGTAC+AGG + chr4_4:52522304-52522323 Msa0687620:intron 30.0%
TGGATGTACAAGAAGATTAT+TGG - chr4_4:52522465-52522484 None:intergenic 30.0%
! TTCTTTGATTGATTTCATCC+AGG + chr4_4:52522512-52522531 Msa0687620:intron 30.0%
!!! GTTAGCAGAATTTTTTCTTC+AGG - chr4_4:52522562-52522581 None:intergenic 30.0%
ACCAACCAAAATGATATCTA+TGG - chr4_4:52522740-52522759 None:intergenic 30.0%
TCTTCTGCACTAATAGTAAT+AGG + chr4_4:52522763-52522782 Msa0687620:intron 30.0%
CTTCTGCACTAATAGTAATA+GGG + chr4_4:52522764-52522783 Msa0687620:intron 30.0%
!! TATTTCATTTTCAGGCATAC+TGG + chr4_4:52522801-52522820 Msa0687620:intron 30.0%
GTACACTAGAATGATATTCT+TGG - chr4_4:52522951-52522970 None:intergenic 30.0%
!! AACCAGAAAGACTTTGAAAT+GGG - chr4_4:52523051-52523070 None:intergenic 30.0%
! TAACCAGAAAGACTTTGAAA+TGG - chr4_4:52523052-52523071 None:intergenic 30.0%
TTTACTCTCCTTATCTTGTT+TGG + chr4_4:52523173-52523192 Msa0687620:intron 30.0%
! TCCTTATCTTGTTTGGTAAT+AGG + chr4_4:52523180-52523199 Msa0687620:intron 30.0%
ACCTATTACCAAACAAGATA+AGG - chr4_4:52523184-52523203 None:intergenic 30.0%
AAATACAATACATTCGGTAG+AGG - chr4_4:52523288-52523307 None:intergenic 30.0%
ACAGGATGTAAAACATTATG+GGG - chr4_4:52523333-52523352 None:intergenic 30.0%
CTACAGGATGTAAAACATTA+TGG - chr4_4:52523335-52523354 None:intergenic 30.0%
! TTTTACATCCTGTAGAAGTA+GGG + chr4_4:52523340-52523359 Msa0687620:intron 30.0%
AGAAGTGAAAAGGGATTAAA+AGG + chr4_4:52523363-52523382 Msa0687620:intron 30.0%
GAAGTGAAAAGGGATTAAAA+GGG + chr4_4:52523364-52523383 Msa0687620:intron 30.0%
AAAATTGAGGATGTAATCAG+TGG - chr4_4:52523527-52523546 None:intergenic 30.0%
!! TGCATAATTTTGAGAACAGA+AGG + chr4_4:52523567-52523586 Msa0687620:intron 30.0%
! TTCAGAGGATTGCTTTATTA+AGG + chr4_4:52523697-52523716 Msa0687620:intron 30.0%
!!! TAAGGAAAATGTTGTTTTGC+TGG + chr4_4:52523715-52523734 Msa0687620:intron 30.0%
GATTGAGTATATTTAAGTGG+CGG + chr4_4:52523772-52523791 Msa0687620:intron 30.0%
GAGAATATATCAACAACATG+AGG - chr4_4:52524309-52524328 None:intergenic 30.0%
TATTAGCATCTCTTGAGAAT+AGG - chr4_4:52524370-52524389 None:intergenic 30.0%
GTTTATTTGTGTAAAACTGG+AGG + chr4_4:52524425-52524444 Msa0687620:intron 30.0%
CTGTATCATGGAAATAACTA+TGG + chr4_4:52524457-52524476 Msa0687620:intron 30.0%
AATAATCCCTATCTCACTAA+AGG - chr4_4:52524557-52524576 None:intergenic 30.0%
GGAAAATAAAGTAGTGGTAT+TGG - chr4_4:52524814-52524833 None:intergenic 30.0%
TTCTGATAATTGCATCTGAT+AGG - chr4_4:52524870-52524889 None:intergenic 30.0%
ATCCTGTGCTAACAATATAA+CGG - chr4_4:52524905-52524924 None:intergenic 30.0%
CTAAATTAAAGCTCTATCCA+AGG - chr4_4:52525090-52525109 None:intergenic 30.0%
! GATAGAGCTTTAATTTAGCA+TGG + chr4_4:52525092-52525111 Msa0687620:exon 30.0%
AACTTATATCAGCTAGAAAC+AGG - chr4_4:52525131-52525150 None:intergenic 30.0%
! TCCATGGGAACATTAATTTT+GGG + chr4_4:52525604-52525623 Msa0687620:intron 30.0%
! TTAGTATTGAAGAGAGCTAT+TGG + chr4_4:52525831-52525850 Msa0687620:three_prime_UTR 30.0%
TACTTAGGTGAGTTATTTAC+AGG - chr4_4:52526093-52526112 None:intergenic 30.0%
! GATATATTGCTGAAGTACTT+AGG - chr4_4:52526108-52526127 None:intergenic 30.0%
ACCATCTTTAGTCTCCAAAA+GGG - chr4_4:52521118-52521137 None:intergenic 35.0%
!! TAAAGATGGTGGAAGAACTT+GGG + chr4_4:52521128-52521147 Msa0687620:five_prime_UTR 35.0%
ACATAAGTTGTTGAATGTGC+AGG + chr4_4:52521604-52521623 Msa0687620:intron 35.0%
GAATGTGCAGGTATACATAA+AGG + chr4_4:52521616-52521635 Msa0687620:intron 35.0%
AAACAGAGGATACAATTGGA+AGG + chr4_4:52521697-52521716 Msa0687620:CDS 35.0%
CAGTTACATCAAACGAAGTT+TGG - chr4_4:52521783-52521802 None:intergenic 35.0%
! TGGATCCATAATGCCATTTA+AGG + chr4_4:52521832-52521851 Msa0687620:intron 35.0%
GAATGTAACTCTTTCAAGCT+AGG + chr4_4:52521854-52521873 Msa0687620:intron 35.0%
TAATACATTTGGAAGTAGGG+TGG + chr4_4:52521926-52521945 Msa0687620:intron 35.0%
!! ACAGTTTCTAGTGGTATTAG+TGG + chr4_4:52522100-52522119 Msa0687620:CDS 35.0%
! TGCTTTTGCTTCTATTTGCT+TGG + chr4_4:52522259-52522278 Msa0687620:intron 35.0%
ATCCAGGTGATATCATTGAT+AGG + chr4_4:52522528-52522547 Msa0687620:intron 35.0%
ATCCTATCAATGATATCACC+TGG - chr4_4:52522533-52522552 None:intergenic 35.0%
!!! AGCAGAATTTTTTCTTCAGG+AGG - chr4_4:52522559-52522578 None:intergenic 35.0%
GTCTTAATGTCTCGAATAGT+TGG + chr4_4:52522685-52522704 Msa0687620:intron 35.0%
!! GCCATAGATATCATTTTGGT+TGG + chr4_4:52522736-52522755 Msa0687620:intron 35.0%
!! AGACTTTGAAATGGGTGAAA+AGG - chr4_4:52523043-52523062 None:intergenic 35.0%
! GTTTTACATCCTGTAGAAGT+AGG + chr4_4:52523339-52523358 Msa0687620:intron 35.0%
AAAATTATGGATACAGGACG+AGG + chr4_4:52524062-52524081 Msa0687620:intron 35.0%
CTCTTGAGAACTAATAATGG+TGG + chr4_4:52524111-52524130 Msa0687620:CDS 35.0%
AGGAGTAATACAAAGACCAA+TGG - chr4_4:52524345-52524364 None:intergenic 35.0%
CTTGGAGAAATGAAAACAGT+CGG + chr4_4:52524511-52524530 Msa0687620:intron 35.0%
!! TAAAGGAGGTACTCTTACTA+AGG - chr4_4:52524540-52524559 None:intergenic 35.0%
!! AAGTGGAAATTTTGGTAGCT+GGG - chr4_4:52524585-52524604 None:intergenic 35.0%
CTACCAAAATTTCCACTTCA+CGG + chr4_4:52524587-52524606 Msa0687620:intron 35.0%
GTTAGAATTAGAGAAAGGTG+AGG - chr4_4:52524681-52524700 None:intergenic 35.0%
AGCAGGTTAGAATTAGAGAA+AGG - chr4_4:52524686-52524705 None:intergenic 35.0%
GATGTGGAAGAAAGAGAAAA+AGG - chr4_4:52524738-52524757 None:intergenic 35.0%
TATGGTGCATGTTTATAGGA+GGG - chr4_4:52524845-52524864 None:intergenic 35.0%
ATCCGTTATATTGTTAGCAC+AGG + chr4_4:52524900-52524919 Msa0687620:intron 35.0%
! AGGTTCATTGATGACAAGAA+GGG + chr4_4:52525028-52525047 Msa0687620:intron 35.0%
TGACAAGAAGGGATTTGTAT+TGG + chr4_4:52525039-52525058 Msa0687620:CDS 35.0%
GACAAGAAGGGATTTGTATT+GGG + chr4_4:52525040-52525059 Msa0687620:CDS 35.0%
GGATTTGTATTGGGAAATGA+TGG + chr4_4:52525049-52525068 Msa0687620:CDS 35.0%
ATACTGAAACTAAGAATGCC+TGG + chr4_4:52525464-52525483 Msa0687620:intron 35.0%
CCATGTAAATCAGAAAAACC+AGG - chr4_4:52525499-52525518 None:intergenic 35.0%
!! CCTGGTTTTTCTGATTTACA+TGG + chr4_4:52525496-52525515 Msa0687620:intron 35.0%
CAAAATTAATGTTCCCATGG+AGG - chr4_4:52525605-52525624 None:intergenic 35.0%
! CTCCATGGGAACATTAATTT+TGG + chr4_4:52525603-52525622 Msa0687620:intron 35.0%
! CCATGGGAACATTAATTTTG+GGG + chr4_4:52525605-52525624 Msa0687620:intron 35.0%
! CATGGGAACATTAATTTTGG+GGG + chr4_4:52525606-52525625 Msa0687620:intron 35.0%
ATAGATCCAAGTTAGAACAC+TGG + chr4_4:52525706-52525725 Msa0687620:intron 35.0%
CTTAAACCAGTGTTCTAACT+TGG - chr4_4:52525715-52525734 None:intergenic 35.0%
!! CAAGTTAGAACACTGGTTTA+AGG + chr4_4:52525713-52525732 Msa0687620:intron 35.0%
!! CATTTTTCAGCATGACATCA+AGG - chr4_4:52525869-52525888 None:intergenic 35.0%
ATGTCATGCTGAAAAATGTG+AGG + chr4_4:52525871-52525890 Msa0687620:three_prime_UTR 35.0%
! AAATGGAAACGGATTTGTCC+TGG + chr4_4:52521065-52521084 Msa0687620:five_prime_UTR 40.0%
!! ACCCTTTTGGAGACTAAAGA+TGG + chr4_4:52521114-52521133 Msa0687620:five_prime_UTR 40.0%
CACCATCTTTAGTCTCCAAA+AGG - chr4_4:52521119-52521138 None:intergenic 40.0%
!! CTTTTGGAGACTAAAGATGG+TGG + chr4_4:52521117-52521136 Msa0687620:five_prime_UTR 40.0%
!! CTAAAGATGGTGGAAGAACT+TGG + chr4_4:52521127-52521146 Msa0687620:five_prime_UTR 40.0%
AAATCTTCATCTTCTGCGGA+TGG - chr4_4:52521168-52521187 None:intergenic 40.0%
ATCAGCTTCAAAGGGAAAGA+AGG + chr4_4:52521207-52521226 Msa0687620:five_prime_UTR 40.0%
GGAGTGTACAATAGAATTGC+AGG - chr4_4:52521249-52521268 None:intergenic 40.0%
GTAGCAGTAGAAACAAGCAT+TGG - chr4_4:52521351-52521370 None:intergenic 40.0%
ATTAGTAGTAGGAGGAGTAG+TGG + chr4_4:52521393-52521412 Msa0687620:intron 40.0%
! ACATAGCTTTTGCGTTGAGT+TGG + chr4_4:52521447-52521466 Msa0687620:intron 40.0%
CCAATTGTATCCTCTGTTTG+AGG - chr4_4:52521696-52521715 None:intergenic 40.0%
CCTCAAACAGAGGATACAAT+TGG + chr4_4:52521693-52521712 Msa0687620:CDS 40.0%
!! CACTAGAAACTGTTCTGAAG+AGG - chr4_4:52522093-52522112 None:intergenic 40.0%
! CTCTTCAGAACAGTTTCTAG+TGG + chr4_4:52522091-52522110 Msa0687620:intron 40.0%
! GTGAGGCTTTTACTTAGTGA+TGG + chr4_4:52522232-52522251 Msa0687620:intron 40.0%
!! TTTACTTTTGGCATGCCATG+TGG + chr4_4:52522286-52522305 Msa0687620:intron 40.0%
CAGTGCAAAAAGCAAAAGAG+AGG - chr4_4:52522604-52522623 None:intergenic 40.0%
AATGTCTCGAATAGTTGGCT+TGG + chr4_4:52522690-52522709 Msa0687620:intron 40.0%
! ATGTCTCGAATAGTTGGCTT+GGG + chr4_4:52522691-52522710 Msa0687620:intron 40.0%
! GGTAGTCTTTTTCTCAGCAA+AGG + chr4_4:52522908-52522927 Msa0687620:CDS 40.0%
!! TTTTTCTCAGCAAAGGCACA+GGG + chr4_4:52522915-52522934 Msa0687620:CDS 40.0%
GTGTACCCATATGATACTAG+TGG + chr4_4:52522965-52522984 Msa0687620:intron 40.0%
GAAGGCCACTAGTATCATAT+GGG - chr4_4:52522973-52522992 None:intergenic 40.0%
AAGGGAATGAGTGAAAAGGA+AGG - chr4_4:52522991-52523010 None:intergenic 40.0%
CACCCATTTCAAAGTCTTTC+TGG + chr4_4:52523046-52523065 Msa0687620:intron 40.0%
! GTTTTGTCACACTTTTCACG+TGG + chr4_4:52523104-52523123 Msa0687620:intron 40.0%
GTGCAAGATAGAGATAGAGA+TGG - chr4_4:52523136-52523155 None:intergenic 40.0%
CAAGGGAAGAGAATGCAATA+AGG - chr4_4:52523235-52523254 None:intergenic 40.0%
ATGAAAAGTGGACAGCACAA+GGG - chr4_4:52523252-52523271 None:intergenic 40.0%
AATGAAAAGTGGACAGCACA+AGG - chr4_4:52523253-52523272 None:intergenic 40.0%
!! GTGCTGTCCACTTTTCATTT+TGG + chr4_4:52523254-52523273 Msa0687620:intron 40.0%
AGAAGTAGGGAGAAGTGAAA+AGG + chr4_4:52523353-52523372 Msa0687620:intron 40.0%
GAAGTAGGGAGAAGTGAAAA+GGG + chr4_4:52523354-52523373 Msa0687620:intron 40.0%
GCAGATAACTGAAGAGTTTG+AGG + chr4_4:52523602-52523621 Msa0687620:intron 40.0%
AAATTCCTGTTCAAAGCCGA+GGG + chr4_4:52523625-52523644 Msa0687620:CDS 40.0%
TCGTATTGAAAGAACTGCAG+AGG - chr4_4:52523979-52523998 None:intergenic 40.0%
CTAATAATGGTGGCAAGTCA+TGG + chr4_4:52524121-52524140 Msa0687620:CDS 40.0%
GAGCTCTACAAGTAAATTGG+AGG - chr4_4:52524265-52524284 None:intergenic 40.0%
CGAGAGCTCTACAAGTAAAT+TGG - chr4_4:52524268-52524287 None:intergenic 40.0%
TATCAACAACATGAGGAACC+TGG - chr4_4:52524302-52524321 None:intergenic 40.0%
! CTCCACTTCTTTTGTTCCAT+TGG + chr4_4:52524326-52524345 Msa0687620:intron 40.0%
GACCAATGGAACAAAAGAAG+TGG - chr4_4:52524331-52524350 None:intergenic 40.0%
GCATCTCTTGAGAATAGGAA+AGG - chr4_4:52524365-52524384 None:intergenic 40.0%
AGGAGTTAGCATCTGTATCA+TGG + chr4_4:52524445-52524464 Msa0687620:intron 40.0%
ATGGATGGAGATGATCTACT+TGG + chr4_4:52524493-52524512 Msa0687620:intron 40.0%
AGTACCTCCTTTAGTGAGAT+AGG + chr4_4:52524547-52524566 Msa0687620:intron 40.0%
GTACCTCCTTTAGTGAGATA+GGG + chr4_4:52524548-52524567 Msa0687620:intron 40.0%
AATCCCTATCTCACTAAAGG+AGG - chr4_4:52524554-52524573 None:intergenic 40.0%
!! GAAGTGGAAATTTTGGTAGC+TGG - chr4_4:52524586-52524605 None:intergenic 40.0%
! GATCCGTGAAGTGGAAATTT+TGG - chr4_4:52524593-52524612 None:intergenic 40.0%
ATACCCCCTTCATTCTGTTA+CGG + chr4_4:52524615-52524634 Msa0687620:intron 40.0%
!! GACAAAGAGGAGGTATTTAG+AGG - chr4_4:52524642-52524661 None:intergenic 40.0%
AAAGGTGAGGAAATCATTGG+CGG - chr4_4:52524668-52524687 None:intergenic 40.0%
GAGAAAGGTGAGGAAATCAT+TGG - chr4_4:52524671-52524690 None:intergenic 40.0%
AAAGAGAAAAAGGAGCAGGA+AGG - chr4_4:52524728-52524747 None:intergenic 40.0%
GAAGAAAGAGAAAAAGGAGC+AGG - chr4_4:52524732-52524751 None:intergenic 40.0%
GTTTATAGGAGGGGGAATAA+AGG - chr4_4:52524835-52524854 None:intergenic 40.0%
ATGGTGCATGTTTATAGGAG+GGG - chr4_4:52524844-52524863 None:intergenic 40.0%
CTATGGTGCATGTTTATAGG+AGG - chr4_4:52524846-52524865 None:intergenic 40.0%
CTCCTATAAACATGCACCAT+AGG + chr4_4:52524844-52524863 Msa0687620:intron 40.0%
AATTGCATCTGATAGGCCTA+TGG - chr4_4:52524863-52524882 None:intergenic 40.0%
! TAAATGGTTTCACTTGCTGC+AGG + chr4_4:52525008-52525027 Msa0687620:intron 40.0%
! CAGGTTCATTGATGACAAGA+AGG + chr4_4:52525027-52525046 Msa0687620:intron 40.0%
AAAACCAGGAGTTTCTTTCC+AGG - chr4_4:52525485-52525504 None:intergenic 40.0%
! TTATATGTGCTGATCCTCCA+TGG + chr4_4:52525588-52525607 Msa0687620:intron 40.0%
! TATATGTGCTGATCCTCCAT+GGG + chr4_4:52525589-52525608 Msa0687620:intron 40.0%
CCCCAAAATTAATGTTCCCA+TGG - chr4_4:52525608-52525627 None:intergenic 40.0%
TGACAACGACATATAGAGTC+AGG + chr4_4:52525651-52525670 Msa0687620:intron 40.0%
GCTCTCTTCAATACTAAGCA+TGG - chr4_4:52525828-52525847 None:intergenic 40.0%
CTGAAAAATGTGAGGAGATG+TGG + chr4_4:52525879-52525898 Msa0687620:three_prime_UTR 40.0%
! TGTCCTGGTAGGTTTTCTTC+TGG + chr4_4:52521080-52521099 Msa0687620:five_prime_UTR 45.0%
! GTCCTGGTAGGTTTTCTTCT+GGG + chr4_4:52521081-52521100 Msa0687620:five_prime_UTR 45.0%
! TCCTGGTAGGTTTTCTTCTG+GGG + chr4_4:52521082-52521101 Msa0687620:five_prime_UTR 45.0%
GCTTCAAAGGGAAAGAAGGA+TGG + chr4_4:52521211-52521230 Msa0687620:five_prime_UTR 45.0%
CTATTGTACACTCCTGATGC+TGG + chr4_4:52521255-52521274 Msa0687620:five_prime_UTR 45.0%
AGCATGTATACCATATCGCC+AGG - chr4_4:52521318-52521337 None:intergenic 45.0%
TGCTGTTCAGGAATCAGTGT+CGG + chr4_4:52521721-52521740 Msa0687620:CDS 45.0%
!! CAGTGTCGGCTACTCTTAAT+AGG + chr4_4:52521735-52521754 Msa0687620:CDS 45.0%
AGTGGTGCAAGCTATTACAC+TGG + chr4_4:52522118-52522137 Msa0687620:CDS 45.0%
ACTGCAACATACCTTCCATC+GGG - chr4_4:52522169-52522188 None:intergenic 45.0%
GACTGCAACATACCTTCCAT+CGG - chr4_4:52522170-52522189 None:intergenic 45.0%
TATGTTGCAGTCTCAAGTCG+TGG + chr4_4:52522178-52522197 Msa0687620:CDS 45.0%
TGGCAACTTCTACATGACCT+GGG + chr4_4:52522198-52522217 Msa0687620:CDS 45.0%
TGCCAGAAGAATCCAGAACA+TGG + chr4_4:52522844-52522863 Msa0687620:CDS 45.0%
GCCAGAAGAATCCAGAACAT+GGG + chr4_4:52522845-52522864 Msa0687620:CDS 45.0%
! TCCCATGTTCTGGATTCTTC+TGG - chr4_4:52522849-52522868 None:intergenic 45.0%
GAAGAATCCAGAACATGGGA+TGG + chr4_4:52522849-52522868 Msa0687620:CDS 45.0%
!! CTTTTTCTCAGCAAAGGCAC+AGG + chr4_4:52522914-52522933 Msa0687620:CDS 45.0%
!! TTTTCTCAGCAAAGGCACAG+GGG + chr4_4:52522916-52522935 Msa0687620:CDS 45.0%
GGAAGGCCACTAGTATCATA+TGG - chr4_4:52522974-52522993 None:intergenic 45.0%
CCAGAAGGGAATGAGTGAAA+AGG - chr4_4:52522995-52523014 None:intergenic 45.0%
! CCTTTTCACTCATTCCCTTC+TGG + chr4_4:52522992-52523011 Msa0687620:intron 45.0%
TCACTTCTCCCTACTTCTAC+AGG - chr4_4:52523351-52523370 None:intergenic 45.0%
GAAATTCCTGTTCAAAGCCG+AGG + chr4_4:52523624-52523643 Msa0687620:CDS 45.0%
! TGATGTCGGGTATCGTTCAA+CGG + chr4_4:52523659-52523678 Msa0687620:CDS 45.0%
! TGTTGTCAGCAGCTTTGTCA+CGG - chr4_4:52524149-52524168 None:intergenic 45.0%
!! ATGAGGAACCTGGTTTGGTT+GGG - chr4_4:52524292-52524311 None:intergenic 45.0%
ACAACATGAGGAACCTGGTT+TGG - chr4_4:52524297-52524316 None:intergenic 45.0%
AGGACCGTAACAGAATGAAG+GGG - chr4_4:52524622-52524641 None:intergenic 45.0%
GAGGACCGTAACAGAATGAA+GGG - chr4_4:52524623-52524642 None:intergenic 45.0%
AGAGGACCGTAACAGAATGA+AGG - chr4_4:52524624-52524643 None:intergenic 45.0%
TAACAACATGGACAGCTAGC+AGG - chr4_4:52524703-52524722 None:intergenic 45.0%
AGCAGGAAGGAGTAACAACA+TGG - chr4_4:52524715-52524734 None:intergenic 45.0%
TCAACGGAGAAAGGGACAAA+TGG - chr4_4:52524766-52524785 None:intergenic 45.0%
AGTGTGCATCAACGGAGAAA+GGG - chr4_4:52524774-52524793 None:intergenic 45.0%
AAGTGTGCATCAACGGAGAA+AGG - chr4_4:52524775-52524794 None:intergenic 45.0%
! GGTATTGGGTCTAAAGAGCA+AGG - chr4_4:52524799-52524818 None:intergenic 45.0%
TGGTGCATGTTTATAGGAGG+GGG - chr4_4:52524843-52524862 None:intergenic 45.0%
GGCCTATGGTGCATGTTTAT+AGG - chr4_4:52524849-52524868 None:intergenic 45.0%
GATGCAGCTGAAACTACTTG+TGG - chr4_4:52525165-52525184 None:intergenic 45.0%
AATGCCTGGAAAGAAACTCC+TGG + chr4_4:52525478-52525497 Msa0687620:intron 45.0%
GGGGTTAACTAATGCAAGCA+TGG + chr4_4:52525625-52525644 Msa0687620:intron 45.0%
AGCCTAGTGCATAGCTTCAA+CGG + chr4_4:52526011-52526030 Msa0687620:three_prime_UTR 45.0%
TACCGTTGAAGCTATGCACT+AGG - chr4_4:52526016-52526035 None:intergenic 45.0%
! GGAAACGGATTTGTCCTGGT+AGG + chr4_4:52521069-52521088 Msa0687620:five_prime_UTR 50.0%
TCCCCAGAAGAAAACCTACC+AGG - chr4_4:52521086-52521105 None:intergenic 50.0%
!! TAGGTTTTCTTCTGGGGACG+AGG + chr4_4:52521088-52521107 Msa0687620:five_prime_UTR 50.0%
TCTGCGGATGGTATAGAACG+TGG - chr4_4:52521156-52521175 None:intergenic 50.0%
AGGGAAAGAAGGATGGATCG+TGG + chr4_4:52521218-52521237 Msa0687620:five_prime_UTR 50.0%
GGGAAAGAAGGATGGATCGT+GGG + chr4_4:52521219-52521238 Msa0687620:five_prime_UTR 50.0%
TCCTGATGCTGGAGAGAGTT+GGG + chr4_4:52521266-52521285 Msa0687620:five_prime_UTR 50.0%
ATGCTGGAGAGAGTTGGGAA+AGG + chr4_4:52521271-52521290 Msa0687620:five_prime_UTR 50.0%
TGCTGAACTTCCTGGCGATA+TGG + chr4_4:52521305-52521324 Msa0687620:exon 50.0%
GTAGTAGGAGGAGTAGTGGT+AGG + chr4_4:52521397-52521416 Msa0687620:intron 50.0%
GGCAACTAATGAGAAGAGCG+CGG + chr4_4:52521637-52521656 Msa0687620:CDS 50.0%
! TAATGAGAAGAGCGCGGAGA+TGG + chr4_4:52521643-52521662 Msa0687620:CDS 50.0%
CAATTGGAAGGCTGCTGTTC+AGG + chr4_4:52521709-52521728 Msa0687620:CDS 50.0%
ACTGTCAATCGATCTCCCGA+TGG + chr4_4:52522151-52522170 Msa0687620:CDS 50.0%
TCAATCGATCTCCCGATGGA+AGG + chr4_4:52522155-52522174 Msa0687620:CDS 50.0%
GTGGCAACTTCTACATGACC+TGG + chr4_4:52522197-52522216 Msa0687620:CDS 50.0%
AGTAAAAGCCTCACCTGACC+AGG - chr4_4:52522226-52522245 None:intergenic 50.0%
AAGGATGAGCTGACGCATCA+TGG - chr4_4:52522656-52522675 None:intergenic 50.0%
CTGGCAACTGCTCTGTTATG+TGG - chr4_4:52522830-52522849 None:intergenic 50.0%
AACATGGGATGGAGAGCTGA+TGG + chr4_4:52522860-52522879 Msa0687620:CDS 50.0%
CATCAAGAATGCCGAACCCT+CGG - chr4_4:52523644-52523663 None:intergenic 50.0%
GGGTTCGGCATTCTTGATGT+CGG + chr4_4:52523645-52523664 Msa0687620:CDS 50.0%
GGTTCGGCATTCTTGATGTC+GGG + chr4_4:52523646-52523665 Msa0687620:CDS 50.0%
TATGGATACAGGACGAGGCT+TGG + chr4_4:52524067-52524086 Msa0687620:intron 50.0%
ATGGATACAGGACGAGGCTT+GGG + chr4_4:52524068-52524087 Msa0687620:intron 50.0%
!! CATGAGGAACCTGGTTTGGT+TGG - chr4_4:52524293-52524312 None:intergenic 50.0%
GGACCGTAACAGAATGAAGG+GGG - chr4_4:52524621-52524640 None:intergenic 50.0%
TCATTGGCGGAGAGACAAAG+AGG - chr4_4:52524655-52524674 None:intergenic 50.0%
GCAAGGCAAGTGTGCATCAA+CGG - chr4_4:52524782-52524801 None:intergenic 50.0%
CTCCTGATGCTGGAGAGAGT+TGG + chr4_4:52521265-52521284 Msa0687620:five_prime_UTR 55.0%
TCCCAACTCTCTCCAGCATC+AGG - chr4_4:52521270-52521289 None:intergenic 55.0%
! CCAGGAAGTTCAGCACTGAG+CGG - chr4_4:52521300-52521319 None:intergenic 55.0%
GCGGAGATGGTGACTGATGA+AGG + chr4_4:52521656-52521675 Msa0687620:CDS 55.0%
TTCTACATGACCTGGGAGCC+TGG + chr4_4:52522205-52522224 Msa0687620:CDS 55.0%
TGACGCATCATGGCGCATTG+AGG - chr4_4:52522646-52522665 None:intergenic 55.0%
CAGCTCTCCATCCCATGTTC+TGG - chr4_4:52522859-52522878 None:intergenic 55.0%
ATGGGATGGAGAGCTGATGG+TGG + chr4_4:52522863-52522882 Msa0687620:CDS 55.0%
! GGTCTCTGGCTTCTTGTTCG+TGG + chr4_4:52522884-52522903 Msa0687620:CDS 55.0%
! CTCTGGCTTCTTGTTCGTGG+AGG + chr4_4:52522887-52522906 Msa0687620:CDS 55.0%
CCTGTTCAAAGCCGAGGGTT+CGG + chr4_4:52523630-52523649 Msa0687620:CDS 55.0%
! GGGGTATCTGATCCGTGAAG+TGG - chr4_4:52524602-52524621 None:intergenic 55.0%
TTGGCGGAGAGACAAAGAGG+AGG - chr4_4:52524652-52524671 None:intergenic 55.0%
GGGACAAATGGCTGCAGATG+TGG - chr4_4:52524754-52524773 None:intergenic 55.0%
GGAGTCTTGCTTCGCTACCT+TGG + chr4_4:52525070-52525089 Msa0687620:CDS 55.0%
! GGGGACGAGGCAAACCCTTT+TGG + chr4_4:52521101-52521120 Msa0687620:five_prime_UTR 60.0%
! CCGCTCAGTGCTGAACTTCC+TGG + chr4_4:52521297-52521316 Msa0687620:five_prime_UTR 60.0%
!! GGAGAGCTGATGGTGGTCTC+TGG + chr4_4:52522870-52522889 Msa0687620:CDS 60.0%
!! CCGAACCCTCGGCTTTGAAC+AGG - chr4_4:52523633-52523652 None:intergenic 60.0%
GCTCTCGTCCCAACCAAACC+AGG + chr4_4:52524281-52524300 Msa0687620:intron 60.0%
CATGACCTGGGAGCCTGGTC+AGG + chr4_4:52522210-52522229 Msa0687620:CDS 65.0%
CCTCACCTGACCAGGCTCCC+AGG - chr4_4:52522218-52522237 None:intergenic 70.0%
CCTGGGAGCCTGGTCAGGTG+AGG + chr4_4:52522215-52522234 Msa0687620:intron 70.0%
CAGGACGAGGCTTGGGCAGC+AGG + chr4_4:52524075-52524094 Msa0687620:intron 70.0%
GACGAGGCTTGGGCAGCAGG+TGG + chr4_4:52524078-52524097 Msa0687620:CDS 70.0%
GCTTGGGCAGCAGGTGGCAG+TGG + chr4_4:52524084-52524103 Msa0687620:CDS 70.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 52520963 52526143 52520963 ID=Msa0687620;Name=Msa0687620
chr4_4 mRNA 52520963 52526143 52520963 ID=Msa0687620-mRNA-1;Parent=Msa0687620;Name=Msa0687620-mRNA-1;_AED=0.03;_eAED=0.03;_QI=361|1|1|1|0.85|0.75|8|379|215
chr4_4 exon 52520963 52521326 52520963 ID=Msa0687620-mRNA-1:exon:13778;Parent=Msa0687620-mRNA-1
chr4_4 exon 52521626 52521756 52521626 ID=Msa0687620-mRNA-1:exon:13779;Parent=Msa0687620-mRNA-1
chr4_4 exon 52522099 52522231 52522099 ID=Msa0687620-mRNA-1:exon:13780;Parent=Msa0687620-mRNA-1
chr4_4 exon 52522815 52522937 52522815 ID=Msa0687620-mRNA-1:exon:13781;Parent=Msa0687620-mRNA-1
chr4_4 exon 52523606 52523680 52523606 ID=Msa0687620-mRNA-1:exon:13782;Parent=Msa0687620-mRNA-1
chr4_4 exon 52524078 52524193 52524078 ID=Msa0687620-mRNA-1:exon:13783;Parent=Msa0687620-mRNA-1
chr4_4 exon 52525030 52525113 52525030 ID=Msa0687620-mRNA-1:exon:13784;Parent=Msa0687620-mRNA-1
chr4_4 exon 52525782 52526143 52525782 ID=Msa0687620-mRNA-1:exon:13785;Parent=Msa0687620-mRNA-1
chr4_4 five_prime_UTR 52520963 52521323 52520963 ID=Msa0687620-mRNA-1:five_prime_utr;Parent=Msa0687620-mRNA-1
chr4_4 CDS 52521324 52521326 52521324 ID=Msa0687620-mRNA-1:cds;Parent=Msa0687620-mRNA-1
chr4_4 CDS 52521626 52521756 52521626 ID=Msa0687620-mRNA-1:cds;Parent=Msa0687620-mRNA-1
chr4_4 CDS 52522099 52522231 52522099 ID=Msa0687620-mRNA-1:cds;Parent=Msa0687620-mRNA-1
chr4_4 CDS 52522815 52522937 52522815 ID=Msa0687620-mRNA-1:cds;Parent=Msa0687620-mRNA-1
chr4_4 CDS 52523606 52523680 52523606 ID=Msa0687620-mRNA-1:cds;Parent=Msa0687620-mRNA-1
chr4_4 CDS 52524078 52524193 52524078 ID=Msa0687620-mRNA-1:cds;Parent=Msa0687620-mRNA-1
chr4_4 CDS 52525030 52525096 52525030 ID=Msa0687620-mRNA-1:cds;Parent=Msa0687620-mRNA-1
chr4_4 three_prime_UTR 52525097 52525113 52525097 ID=Msa0687620-mRNA-1:three_prime_utr;Parent=Msa0687620-mRNA-1
chr4_4 three_prime_UTR 52525782 52526143 52525782 ID=Msa0687620-mRNA-1:three_prime_utr;Parent=Msa0687620-mRNA-1
Gene Sequence

>Msa0687620

ATGGTATACATAAAGGCAACTAATGAGAAGAGCGCGGAGATGGTGACTGATGAAGGTGCAATATATGTTACCTCAAACAGAGGATACAATTGGAAGGCTGCTGTTCAGGAATCAGTGTCGGCTACTCTTAATAGAACAGTTTCTAGTGGTATTAGTGGTGCAAGCTATTACACTGGAACTTTCAATACTGTCAATCGATCTCCCGATGGAAGGTATGTTGCAGTCTCAAGTCGTGGCAACTTCTACATGACCTGGGAGCCTGGTCAGGCATACTGGCAGCCACATAACAGAGCAGTTGCCAGAAGAATCCAGAACATGGGATGGAGAGCTGATGGTGGTCTCTGGCTTCTTGTTCGTGGAGGTAGTCTTTTTCTCAGCAAAGGCACAGGGATAACTGAAGAGTTTGAGGAAATTCCTGTTCAAAGCCGAGGGTTCGGCATTCTTGATGTCGGGTATCGTTCAACGGACGAGGCTTGGGCAGCAGGTGGCAGTGGTATTCTCTTGAGAACTAATAATGGTGGCAAGTCATGGATCCGTGACAAAGCTGCTGACAACATTGCTGCAAATTTATACTCAGTAAAGTTCATTGATGACAAGAAGGGATTTGTATTGGGAAATGATGGAGTCTTGCTTCGCTACCTTGGATAG

Protein sequence

>Msa0687620

MVYIKATNEKSAEMVTDEGAIYVTSNRGYNWKAAVQESVSATLNRTVSSGISGASYYTGTFNTVNRSPDGRYVAVSSRGNFYMTWEPGQAYWQPHNRAVARRIQNMGWRADGGLWLLVRGGSLFLSKGTGITEEFEEIPVQSRGFGILDVGYRSTDEAWAAGGSGILLRTNNGGKSWIRDKAADNIAANLYSVKFIDDKKGFVLGNDGVLLRYLG*