AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0687540


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0687540 MtrunA17_Chr4g0038211 98.485 396 5 1 1 395 1 396 0.0 796
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0687540 AT5G23120.2 88.110 328 39 0 68 395 99 426 0.0 610
Msa0687540 AT5G23120.1 88.110 328 39 0 68 395 76 403 0.0 608

Find 120 sgRNAs with CRISPR-Local

Find 388 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACCCGCGAAGACGTTATTT+TGG 0.172710 4_4:+52428818 None:intergenic
TCCCATGTTCTGGATTCTTC+TGG 0.285677 4_4:-52432065 None:intergenic
CAATTGGAAGGCTGCTGTTC+AGG 0.287529 4_4:+52430922 Msa0687540:CDS
TTCTGCAATGAACTGTCTTC+TGG 0.287847 4_4:-52429042 None:intergenic
ACGACGAAGCTTCGAGGTTT+CGG 0.300601 4_4:-52428993 None:intergenic
GGGGACGAGGCAAACCCTTT+TGG 0.313718 4_4:+52430308 Msa0687540:CDS
CAGCTCTCCATCCCATGTTC+TGG 0.319178 4_4:-52432075 None:intergenic
CAGTGTCGGCTACTCTTAAT+AGG 0.333230 4_4:+52430948 Msa0687540:CDS
TGACCATGGTTAGGATCTTC+AGG 0.343300 4_4:-52429188 None:intergenic
CCACTCAGTGCTGAACTTCC+TGG 0.355036 4_4:+52430504 Msa0687540:CDS
GACAAGAAGGGATTTGTATT+GGG 0.359279 4_4:+52434259 Msa0687540:CDS
CCAATTGTATCCTCTGTTTG+AGG 0.361796 4_4:-52430906 None:intergenic
TCCTGATGCTGGAGAGAGTT+GGG 0.369099 4_4:+52430473 Msa0687540:CDS
TGCTGAACTTCCTGGCGATA+TGG 0.370530 4_4:+52430512 Msa0687540:CDS
CAGGACGAGGCTTGGGCAGC+AGG 0.377236 4_4:+52433294 Msa0687540:intron
TGACAAGAAGGGATTTGTAT+TGG 0.379966 4_4:+52434258 Msa0687540:CDS
TTAGTATTGAAGAGAGCTAT+TGG 0.383191 4_4:+52435050 Msa0687540:three_prime_UTR
GGAGAGCTGATGGTGGTCTC+TGG 0.387735 4_4:+52432089 Msa0687540:CDS
GGAGTGTACAATAGAATTGC+AGG 0.392250 4_4:-52430453 None:intergenic
CTAAAGATGGTGGAAGAACT+TGG 0.399326 4_4:+52430334 Msa0687540:CDS
AGAACAACACCAGGATCAAT+AGG 0.404837 4_4:-52429146 None:intergenic
ATTCTCTTGAGAACTAATAA+TGG 0.408224 4_4:+52433327 Msa0687540:CDS
TCCCAACTCTCTCCAGCATC+AGG 0.409768 4_4:-52430474 None:intergenic
GGATTTGTATTGGGAAATGA+TGG 0.410591 4_4:+52434268 Msa0687540:CDS
CACCATCTTTAGTCTCCAAA+AGG 0.415846 4_4:-52430323 None:intergenic
CATGACCTGGGAGCCTGGTC+AGG 0.417923 4_4:+52431423 Msa0687540:CDS
GCAGATAACTGAAGAGTTTG+AGG 0.428888 4_4:+52432821 Msa0687540:intron
CCTGTTCAAAGCCGAGGGTT+CGG 0.431022 4_4:+52432849 Msa0687540:CDS
CCGAACCCTCGGCTTTGAAC+AGG 0.435583 4_4:-52432849 None:intergenic
CTGAAGATACTCTTTCTGAA+TGG 0.436065 4_4:+52429108 Msa0687540:CDS
TTTAATTCTATCAGCTTCAA+AGG 0.439570 4_4:+52430405 Msa0687540:CDS
GAATGTGCAGGTATACATAA+AGG 0.445622 4_4:+52430829 Msa0687540:intron
ATGGATACAGGACGAGGCTT+GGG 0.449840 4_4:+52433287 Msa0687540:intron
CCTCAAACAGAGGATACAAT+TGG 0.450180 4_4:+52430906 Msa0687540:CDS
ACAGTTTCTAGTGGTATTAG+TGG 0.451172 4_4:+52431313 Msa0687540:CDS
TGAAGATACTCTTTCTGAAT+GGG 0.453872 4_4:+52429109 Msa0687540:CDS
AATGAACTGTCTTCTGGTTC+TGG 0.453938 4_4:-52429036 None:intergenic
TTCTACATGACCTGGGAGCC+TGG 0.456770 4_4:+52431418 Msa0687540:CDS
TGTTCCTTCCTTCGTTCCAA+TGG 0.466036 4_4:+52428881 Msa0687540:exon
TGAATGATGGATTTAGAAGA+AGG 0.472189 4_4:-52428966 None:intergenic
GGTCTCTGGCTTCTTGTTCG+TGG 0.472681 4_4:+52432103 Msa0687540:CDS
GCTTGGGCAGCAGGTGGCAG+TGG 0.472705 4_4:+52433303 Msa0687540:CDS
CGTGCTTGTTCCTTCTCAGT+TGG 0.474602 4_4:+52429079 Msa0687540:CDS
GCTTTAACGACGAAGCTTCG+AGG 0.477017 4_4:-52428999 None:intergenic
GGAGTCTTGCTTCGCTACCT+TGG 0.483417 4_4:+52434289 Msa0687540:CDS
AAATGATTATGACCATGGTT+AGG 0.486803 4_4:-52429197 None:intergenic
AGGTTTCGGAGAATGAATGA+TGG 0.491460 4_4:-52428979 None:intergenic
TATGGATACAGGACGAGGCT+TGG 0.491666 4_4:+52433286 Msa0687540:intron
TTAATTCTATCAGCTTCAAA+GGG 0.492876 4_4:+52430406 Msa0687540:CDS
CCTCACCTGACCAGGCTCCC+AGG 0.496515 4_4:-52431428 None:intergenic
CTGGCAACTGCTCTGTTATG+TGG 0.499429 4_4:-52432046 None:intergenic
GGTTCGGCATTCTTGATGTC+GGG 0.503991 4_4:+52432865 Msa0687540:CDS
CTAATAATGGTGGCAAGTCA+TGG 0.505941 4_4:+52433340 Msa0687540:CDS
GAAGAAGGTAGTTGAGATAA+CGG 0.506695 4_4:-52428951 None:intergenic
ATCAGCTTCAAAGGGAAAGA+AGG 0.507563 4_4:+52430414 Msa0687540:CDS
GTTTATCTACCTATTGATCC+TGG 0.509773 4_4:+52429137 Msa0687540:CDS
CTATTGTACACTCCTGATGC+TGG 0.512463 4_4:+52430462 Msa0687540:CDS
AGTGGTGCAAGCTATTACAC+TGG 0.515102 4_4:+52431331 Msa0687540:CDS
GGGTTCGGCATTCTTGATGT+CGG 0.521429 4_4:+52432864 Msa0687540:CDS
ACCATCTTTAGTCTCCAAAA+GGG 0.524391 4_4:-52430322 None:intergenic
TCAGACTTTGCCAACTGAGA+AGG 0.529755 4_4:-52429089 None:intergenic
AGTAAAAGCCTCACCTGACC+AGG 0.530594 4_4:-52431436 None:intergenic
CAGGTTCATTGATGACAAGA+AGG 0.533069 4_4:+52434246 Msa0687540:intron
CTCCTGATGCTGGAGAGAGT+TGG 0.533505 4_4:+52430472 Msa0687540:CDS
GATAGAGCTTTAATTTAGCA+TGG 0.534142 4_4:+52434311 Msa0687540:exon
TAATGAGAAGAGCGCGGAGA+TGG 0.535243 4_4:+52430856 Msa0687540:CDS
GCTCTCTTCAATACTAAGCA+TGG 0.539098 4_4:-52435044 None:intergenic
GTGAATTGCAGAGTCGCCAT+TGG 0.540011 4_4:-52428897 None:intergenic
CATCAAGAATGCCGAACCCT+CGG 0.540289 4_4:-52432860 None:intergenic
CTCTTCAGAACAGTTTCTAG+TGG 0.545286 4_4:+52431304 Msa0687540:intron
ATCCCAAAATAACGTCTTCG+CGG 0.551106 4_4:-52428821 None:intergenic
AAATCTTCATCTTCTGCGGA+TGG 0.551204 4_4:-52430372 None:intergenic
GTTAAAATCTTCATCTTCTG+CGG 0.555309 4_4:-52430376 None:intergenic
AGCCTAGTGCATAGCTTCAA+CGG 0.558162 4_4:+52435230 Msa0687540:three_prime_UTR
GAAGAATCCAGAACATGGGA+TGG 0.558266 4_4:+52432068 Msa0687540:CDS
AACTGTCTTCTGGTTCTGGA+AGG 0.558899 4_4:-52429032 None:intergenic
TCCCAAAATAACGTCTTCGC+GGG 0.561706 4_4:-52428820 None:intergenic
AGCATGTATACCATATCGCC+AGG 0.562377 4_4:-52430522 None:intergenic
GCGGAGATGGTGACTGATGA+AGG 0.562743 4_4:+52430869 Msa0687540:CDS
TGCCAGAAGAATCCAGAACA+TGG 0.568338 4_4:+52432063 Msa0687540:CDS
CTAAATTAAAGCTCTATCCA+AGG 0.575896 4_4:-52434306 None:intergenic
TGTTGTCAGCAGCTTTGTCA+CGG 0.577018 4_4:-52433365 None:intergenic
ACTGCAACATACCTTCCATC+GGG 0.579159 4_4:-52431379 None:intergenic
GTGGCAACTTCTACATGACC+TGG 0.579453 4_4:+52431410 Msa0687540:CDS
ATATATGTTACCTCAAACAG+AGG 0.581515 4_4:+52430896 Msa0687540:CDS
GACTGCAACATACCTTCCAT+CGG 0.584903 4_4:-52431380 None:intergenic
GACGAGGCTTGGGCAGCAGG+TGG 0.586594 4_4:+52433297 Msa0687540:CDS
AGGTTCATTGATGACAAGAA+GGG 0.586700 4_4:+52434247 Msa0687540:intron
GCTTCAAAGGGAAAGAAGGA+TGG 0.587319 4_4:+52430418 Msa0687540:CDS
TACCGTTGAAGCTATGCACT+AGG 0.588689 4_4:-52435232 None:intergenic
AAATTCCTGTTCAAAGCCGA+GGG 0.590036 4_4:+52432844 Msa0687540:CDS
GTCGCCATTGGAACGAAGGA+AGG 0.590348 4_4:-52428885 None:intergenic
CTCTGGCTTCTTGTTCGTGG+AGG 0.590994 4_4:+52432106 Msa0687540:CDS
GAAATTCCTGTTCAAAGCCG+AGG 0.592799 4_4:+52432843 Msa0687540:CDS
TGATGTCGGGTATCGTTCAA+CGG 0.598924 4_4:+52432878 Msa0687540:CDS
GGGAAAGAAGGATGGATCGT+GGG 0.604713 4_4:+52430426 Msa0687540:CDS
ATTTAAATGTAATAGTAGCA+TGG 0.604825 4_4:-52435178 None:intergenic
TAAAGATGGTGGAAGAACTT+GGG 0.606864 4_4:+52430335 Msa0687540:CDS
GTTCCTGAAGATCCTAACCA+TGG 0.609851 4_4:+52429185 Msa0687540:CDS
TCAATCGATCTCCCGATGGA+AGG 0.610839 4_4:+52431368 Msa0687540:CDS
CAGAGTCGCCATTGGAACGA+AGG 0.613407 4_4:-52428889 None:intergenic
TGCTGTTCAGGAATCAGTGT+CGG 0.620604 4_4:+52430934 Msa0687540:CDS
ATGCTGGAGAGAGTTGGGAA+AGG 0.633423 4_4:+52430478 Msa0687540:CDS
CTCTTGAGAACTAATAATGG+TGG 0.633424 4_4:+52433330 Msa0687540:CDS
AACATGGGATGGAGAGCTGA+TGG 0.634621 4_4:+52432079 Msa0687540:CDS
GCCAGAAGAATCCAGAACAT+GGG 0.641481 4_4:+52432064 Msa0687540:CDS
AAACAGAGGATACAATTGGA+AGG 0.654671 4_4:+52430910 Msa0687540:CDS
TGGCAACTTCTACATGACCT+GGG 0.659223 4_4:+52431411 Msa0687540:CDS
TATGTTGCAGTCTCAAGTCG+TGG 0.661059 4_4:+52431391 Msa0687540:CDS
AACAAGCACGGATATAGCAG+TGG 0.669152 4_4:-52429066 None:intergenic
AGGGAAAGAAGGATGGATCG+TGG 0.669551 4_4:+52430425 Msa0687540:CDS
ACTGTCAATCGATCTCCCGA+TGG 0.671901 4_4:+52431364 Msa0687540:CDS
TCTGCGGATGGTATAGAACG+TGG 0.679981 4_4:-52430360 None:intergenic
AGATAACGGTCTGCATAGTG+TGG 0.681803 4_4:-52428937 None:intergenic
ATATCAAGAAGAACAACACC+AGG 0.683523 4_4:-52429155 None:intergenic
TAACGGTCTGCATAGTGTGG+TGG 0.683881 4_4:-52428934 None:intergenic
GGCAACTAATGAGAAGAGCG+CGG 0.689314 4_4:+52430850 Msa0687540:CDS
CAACTGAGAAGGAACAAGCA+CGG 0.692148 4_4:-52429078 None:intergenic
CCAGGAAGTTCAGCACTGAG+TGG 0.692996 4_4:-52430504 None:intergenic
ATGGGATGGAGAGCTGATGG+TGG 0.712985 4_4:+52432082 Msa0687540:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTTTCATAAGTTATTTT+CGG - chr4_4:52429904-52429923 None:intergenic 10.0%
!!! TATTTTTTTCATAGAAATAT+GGG - chr4_4:52430012-52430031 None:intergenic 10.0%
!!! TTATTTTTTTCATAGAAATA+TGG - chr4_4:52430013-52430032 None:intergenic 10.0%
!! TAAATATTATTATTAGTAGT+AGG + chr4_4:52430589-52430608 Msa0687540:intron 10.0%
!! TTGAAAATAAAATAAAATTG+AGG - chr4_4:52432759-52432778 None:intergenic 10.0%
!! TATATTCTACAAAATATTAT+CGG - chr4_4:52433619-52433638 None:intergenic 10.0%
!!! TTTTAATTTAATTCTATGAA+AGG - chr4_4:52434899-52434918 None:intergenic 10.0%
!!! TTTAATTTTTCAATGAAAAA+TGG + chr4_4:52434968-52434987 Msa0687540:intron 10.0%
!!! CATTTTGTAATTTCTTTTTT+TGG - chr4_4:52429635-52429654 None:intergenic 15.0%
!! AAAAAGAAATTACAAAATGT+AGG + chr4_4:52429636-52429655 Msa0687540:intron 15.0%
!! GATACATTAAAAATATTCTT+AGG + chr4_4:52431594-52431613 Msa0687540:intron 15.0%
!!! TTTGAGATTTATTATATATG+TGG - chr4_4:52432667-52432686 None:intergenic 15.0%
!! ATACAAAATTTGCAAAATTA+TGG + chr4_4:52433268-52433287 Msa0687540:intron 15.0%
!! GAAGAAAAGAAAAAAAATTA+GGG + chr4_4:52434764-52434783 Msa0687540:intron 15.0%
!! TCATAGAATTAAATTAAAAG+TGG + chr4_4:52434900-52434919 Msa0687540:intron 15.0%
!! CATAGAATTAAATTAAAAGT+GGG + chr4_4:52434901-52434920 Msa0687540:intron 15.0%
!! ATAGAATTAAATTAAAAGTG+GGG + chr4_4:52434902-52434921 Msa0687540:intron 15.0%
!!! AAATTTGTTTCTAATGTAGA+AGG + chr4_4:52429553-52429572 Msa0687540:intron 20.0%
!! AATAAGTTGTTTATCAAAAC+AGG - chr4_4:52429722-52429741 None:intergenic 20.0%
!! AATAAGGTGAAAATATCTTA+TGG + chr4_4:52430079-52430098 Msa0687540:intron 20.0%
!!! CATGATTTGAAATAGAAATA+GGG - chr4_4:52430197-52430216 None:intergenic 20.0%
!!! ACATGATTTGAAATAGAAAT+AGG - chr4_4:52430198-52430217 None:intergenic 20.0%
!! TTTGAATTTGTGTTGTAAAA+TGG + chr4_4:52430255-52430274 Msa0687540:intron 20.0%
!!! AAGATGAAGATTTTAACTAT+AGG + chr4_4:52430382-52430401 Msa0687540:CDS 20.0%
!! ATATTATTATTAGTAGTAGG+AGG + chr4_4:52430592-52430611 Msa0687540:intron 20.0%
!! TATTAATACATTTGGAAGTA+GGG + chr4_4:52431136-52431155 Msa0687540:intron 20.0%
!!! ACACTGCAAATATTTTATTT+CGG + chr4_4:52431249-52431268 Msa0687540:intron 20.0%
!!! AAATGTTTTCTTAAAAGTAG+TGG - chr4_4:52431704-52431723 None:intergenic 20.0%
!!! CTACTTTTAAGAAAACATTT+CGG + chr4_4:52431704-52431723 Msa0687540:intron 20.0%
!! ACATTAAGACATATATTACA+AGG - chr4_4:52431894-52431913 None:intergenic 20.0%
!!! TACATGTTTATTTCATTTTC+AGG + chr4_4:52432012-52432031 Msa0687540:intron 20.0%
!! AAATAAACCAAAATGAAAAG+TGG - chr4_4:52432483-52432502 None:intergenic 20.0%
!! GTAGATAAATACAATACATT+CGG - chr4_4:52432513-52432532 None:intergenic 20.0%
!! AAATAATGATAGAAGTGAAA+GGG - chr4_4:52432642-52432661 None:intergenic 20.0%
!! AAAATAATGATAGAAGTGAA+AGG - chr4_4:52432643-52432662 None:intergenic 20.0%
!!! TTGATCCATTAAATTCTTTT+TGG + chr4_4:52432688-52432707 Msa0687540:intron 20.0%
!! ATTGACCAAAAAGAATTTAA+TGG - chr4_4:52432696-52432715 None:intergenic 20.0%
!! TTTGATTGAGTATATTTAAG+TGG + chr4_4:52432988-52433007 Msa0687540:intron 20.0%
!! TATATAATAATACATGAGTG+AGG - chr4_4:52433052-52433071 None:intergenic 20.0%
!! TATGAAAGTTAATACGAAAA+GGG - chr4_4:52433079-52433098 None:intergenic 20.0%
!! TTATGAAAGTTAATACGAAA+AGG - chr4_4:52433080-52433099 None:intergenic 20.0%
!! ATCAGTCTTAAAAAAAACAT+TGG + chr4_4:52433158-52433177 Msa0687540:intron 20.0%
!!! CTATGGACTAAAATATAAAA+TGG + chr4_4:52433693-52433712 Msa0687540:intron 20.0%
!! AATAAAGGAAAATAAAGTAG+TGG - chr4_4:52434039-52434058 None:intergenic 20.0%
!!! CTATATTTATTTTTCATGTG+TGG - chr4_4:52434157-52434176 None:intergenic 20.0%
!! CACACATGAAAAATAAATAT+AGG + chr4_4:52434155-52434174 Msa0687540:intron 20.0%
!!! AGAGTTTGTAGAATTTTTAT+TGG + chr4_4:52434192-52434211 Msa0687540:intron 20.0%
!! TTGAAACAAGAAATGATAAA+AGG + chr4_4:52434637-52434656 Msa0687540:intron 20.0%
!! CGAAGAAAAGAAAAAAAATT+AGG + chr4_4:52434763-52434782 Msa0687540:intron 20.0%
!! ATTTAAATGTAATAGTAGCA+TGG - chr4_4:52435181-52435200 None:intergenic 20.0%
!! AATTGACTTATTTGAGCTTA+TGG + chr4_4:52429286-52429305 Msa0687540:intron 25.0%
! AAGCTATCATAGAAAACTTA+TGG - chr4_4:52429330-52429349 None:intergenic 25.0%
! TTATCATGTATAAGTGCTTA+TGG - chr4_4:52429404-52429423 None:intergenic 25.0%
! TAATCAAGTGTTTATAGCAT+AGG - chr4_4:52429452-52429471 None:intergenic 25.0%
!!! GATAAAAACTAGTTTTGTGT+TGG + chr4_4:52429501-52429520 Msa0687540:intron 25.0%
!!! TGAAGTCAAACTGTTTTTAT+AGG + chr4_4:52430035-52430054 Msa0687540:intron 25.0%
! TTTGTGTTGTAAAATGGAAA+CGG + chr4_4:52430261-52430280 Msa0687540:intron 25.0%
! TTTAATTCTATCAGCTTCAA+AGG + chr4_4:52430405-52430424 Msa0687540:CDS 25.0%
! TTAATTCTATCAGCTTCAAA+GGG + chr4_4:52430406-52430425 Msa0687540:CDS 25.0%
! CAGTTGAAATGATTAATGTT+TGG - chr4_4:52430727-52430746 None:intergenic 25.0%
! GAATGCATAATGTATATGTA+TGG + chr4_4:52431021-52431040 Msa0687540:intron 25.0%
! AAAGAGTTACATTCCTTAAA+TGG - chr4_4:52431061-52431080 None:intergenic 25.0%
! GAAAGTCGTATTAATACATT+TGG + chr4_4:52431128-52431147 Msa0687540:intron 25.0%
! GTATTAATACATTTGGAAGT+AGG + chr4_4:52431135-52431154 Msa0687540:intron 25.0%
!! AGTTCTAATCAAAGAAGATT+CGG - chr4_4:52431630-52431649 None:intergenic 25.0%
! AAAAAGAAATCTATCCAGAA+GGG - chr4_4:52432228-52432247 None:intergenic 25.0%
! AAAAAAGAAATCTATCCAGA+AGG - chr4_4:52432229-52432248 None:intergenic 25.0%
! TACAGGATGTAAAACATTAT+GGG - chr4_4:52432553-52432572 None:intergenic 25.0%
!!! TTGTACATTTTCTAAGAAAG+GGG - chr4_4:52432611-52432630 None:intergenic 25.0%
!!! CTTGTACATTTTCTAAGAAA+GGG - chr4_4:52432612-52432631 None:intergenic 25.0%
!!! ACTTGTACATTTTCTAAGAA+AGG - chr4_4:52432613-52432632 None:intergenic 25.0%
!! TAAAATTTTACTGCATTCAG+AGG + chr4_4:52432901-52432920 Msa0687540:intron 25.0%
! ATGAAAGTTAATACGAAAAG+GGG - chr4_4:52433078-52433097 None:intergenic 25.0%
! ATTTGCAAAATTATGGATAC+AGG + chr4_4:52433275-52433294 Msa0687540:intron 25.0%
! ATTCTCTTGAGAACTAATAA+TGG + chr4_4:52433327-52433346 Msa0687540:CDS 25.0%
! TTCTACAAAATATTATCGGT+TGG - chr4_4:52433615-52433634 None:intergenic 25.0%
! AGTGTTTATTTGTGTAAAAC+TGG + chr4_4:52433641-52433660 Msa0687540:intron 25.0%
! GGACTAAAATATAAAATGGA+TGG + chr4_4:52433697-52433716 Msa0687540:intron 25.0%
! GAAAATAAAGTAGTGGTATT+GGG - chr4_4:52434032-52434051 None:intergenic 25.0%
! ATAAATATAGGAGATTCTGA+AGG + chr4_4:52434167-52434186 Msa0687540:intron 25.0%
!! TTGGTGATAAATCTTGTAAA+TGG + chr4_4:52434211-52434230 Msa0687540:intron 25.0%
!! AATGAAAAATGGAATTTTGC+AGG + chr4_4:52434979-52434998 Msa0687540:intron 25.0%
!! TGAATGATGGATTTAGAAGA+AGG - chr4_4:52428969-52428988 None:intergenic 30.0%
TGAAGATACTCTTTCTGAAT+GGG + chr4_4:52429109-52429128 Msa0687540:CDS 30.0%
AAATGATTATGACCATGGTT+AGG - chr4_4:52429200-52429219 None:intergenic 30.0%
GAATGAAATGATTATGACCA+TGG - chr4_4:52429205-52429224 None:intergenic 30.0%
TAGCTTATACGAAAATAGCA+TGG + chr4_4:52429344-52429363 Msa0687540:intron 30.0%
TATCATTTCTATGCACTCTT+TGG - chr4_4:52429485-52429504 None:intergenic 30.0%
ATACTATAAGAGCTCAGTTA+AGG - chr4_4:52429679-52429698 None:intergenic 30.0%
TGTAGAAATAGCCTATTCAT+AGG - chr4_4:52429796-52429815 None:intergenic 30.0%
CATAGAAATATGGGTCTATT+TGG - chr4_4:52430003-52430022 None:intergenic 30.0%
!!! ACTGTTTTTATAGGCTATCT+TGG + chr4_4:52430044-52430063 Msa0687540:intron 30.0%
TTGGAGAGCTTATTGAAATA+AGG + chr4_4:52430063-52430082 Msa0687540:intron 30.0%
! GAAATAGGGTTTGTTCAAAT+TGG - chr4_4:52430183-52430202 None:intergenic 30.0%
GTTAAAATCTTCATCTTCTG+CGG - chr4_4:52430379-52430398 None:intergenic 30.0%
AACTGTACAAAAGTAACTGT+TGG + chr4_4:52430742-52430761 Msa0687540:intron 30.0%
ATATATGTTACCTCAAACAG+AGG + chr4_4:52430896-52430915 Msa0687540:CDS 30.0%
GCATAATGTATATGTATGGA+TGG + chr4_4:52431025-52431044 Msa0687540:intron 30.0%
ACATTCCTTAAATGGCATTA+TGG - chr4_4:52431053-52431072 None:intergenic 30.0%
!! TATACTCTAGAGTAGCAATA+TGG + chr4_4:52431106-52431125 Msa0687540:intron 30.0%
!! TTGCTTGGTAGTTTTACTTT+TGG + chr4_4:52431493-52431512 Msa0687540:intron 30.0%
GTACAATTAGATAAACCACA+TGG - chr4_4:52431523-52431542 None:intergenic 30.0%
TGTGGTTTATCTAATTGTAC+AGG + chr4_4:52431523-52431542 Msa0687540:intron 30.0%
TGGATGTACAAGAAGATTAT+TGG - chr4_4:52431684-52431703 None:intergenic 30.0%
! TTCTTTGATTGATTTCATCC+AGG + chr4_4:52431731-52431750 Msa0687540:intron 30.0%
!!! GTTAGCAGAATTTTTTCTTC+AGG - chr4_4:52431781-52431800 None:intergenic 30.0%
AAATGATATCTCTGGCTAAA+TGG - chr4_4:52431951-52431970 None:intergenic 30.0%
! TTTAGCCAGAGATATCATTT+TGG + chr4_4:52431951-52431970 Msa0687540:intron 30.0%
TCTTCTGCACTAATAGTAAT+AGG + chr4_4:52431982-52432001 Msa0687540:intron 30.0%
CTTCTGCACTAATAGTAATA+GGG + chr4_4:52431983-52432002 Msa0687540:intron 30.0%
!! TATTTCATTTTCAGGCATAC+TGG + chr4_4:52432020-52432039 Msa0687540:intron 30.0%
GTACACTAGAATGATATTCT+CGG - chr4_4:52432170-52432189 None:intergenic 30.0%
!! AACCAGAAAGACTTTGAAAT+GGG - chr4_4:52432270-52432289 None:intergenic 30.0%
! TAACCAGAAAGACTTTGAAA+TGG - chr4_4:52432271-52432290 None:intergenic 30.0%
TTTACTCTCCTTATCTTGTT+TGG + chr4_4:52432392-52432411 Msa0687540:intron 30.0%
! TCCTTATCTTGTTTGGTAAT+AGG + chr4_4:52432399-52432418 Msa0687540:intron 30.0%
ACCTATTACCAAACAAGATA+AGG - chr4_4:52432403-52432422 None:intergenic 30.0%
AAATACAATACATTCGGTAG+AGG - chr4_4:52432507-52432526 None:intergenic 30.0%
ACAGGATGTAAAACATTATG+GGG - chr4_4:52432552-52432571 None:intergenic 30.0%
CTACAGGATGTAAAACATTA+TGG - chr4_4:52432554-52432573 None:intergenic 30.0%
! TTTTACATCCTGTAGAAGTA+GGG + chr4_4:52432559-52432578 Msa0687540:intron 30.0%
AGAAGTGAAAAGGGATTAAA+AGG + chr4_4:52432582-52432601 Msa0687540:intron 30.0%
GAAGTGAAAAGGGATTAAAA+GGG + chr4_4:52432583-52432602 Msa0687540:intron 30.0%
AAAATTGAGGATGTAATCAG+TGG - chr4_4:52432746-52432765 None:intergenic 30.0%
!! TGCATAATTTTGAGAACAGA+AGG + chr4_4:52432786-52432805 Msa0687540:intron 30.0%
! TTCAGAGGATTGCTTTATTA+AGG + chr4_4:52432916-52432935 Msa0687540:intron 30.0%
!!! TAAGGAAAATGTTGTTTTGC+TGG + chr4_4:52432934-52432953 Msa0687540:intron 30.0%
GATTGAGTATATTTAAGTGG+CGG + chr4_4:52432991-52433010 Msa0687540:intron 30.0%
GAGAATATATCAACAACATG+AGG - chr4_4:52433528-52433547 None:intergenic 30.0%
TATTAGCATCTCTTGAGAAT+AGG - chr4_4:52433589-52433608 None:intergenic 30.0%
GTTTATTTGTGTAAAACTGG+AGG + chr4_4:52433644-52433663 Msa0687540:intron 30.0%
CTGTATCATGGAAATAACTA+TGG + chr4_4:52433676-52433695 Msa0687540:intron 30.0%
TCTACTTGGAGAAATGAAAA+CGG + chr4_4:52433726-52433745 Msa0687540:intron 30.0%
AATAATCCCTATCTCACTAA+AGG - chr4_4:52433776-52433795 None:intergenic 30.0%
GGAAAATAAAGTAGTGGTAT+TGG - chr4_4:52434033-52434052 None:intergenic 30.0%
TTCTGATAATTGCATCTGAT+AGG - chr4_4:52434089-52434108 None:intergenic 30.0%
ATCCTGTGCTAACAATATAA+CGG - chr4_4:52434124-52434143 None:intergenic 30.0%
CTAAATTAAAGCTCTATCCA+AGG - chr4_4:52434309-52434328 None:intergenic 30.0%
! GATAGAGCTTTAATTTAGCA+TGG + chr4_4:52434311-52434330 Msa0687540:exon 30.0%
AACTTATATCAGCTAGAAAC+AGG - chr4_4:52434350-52434369 None:intergenic 30.0%
! TCCATGGGAACATTAATTTT+GGG + chr4_4:52434823-52434842 Msa0687540:intron 30.0%
! TTAGTATTGAAGAGAGCTAT+TGG + chr4_4:52435050-52435069 Msa0687540:three_prime_UTR 30.0%
!!! GAAGACGTTATTTTGGGATA+AGG + chr4_4:52428825-52428844 Msa0687540:five_prime_UTR 35.0%
GAAGAAGGTAGTTGAGATAA+CGG - chr4_4:52428954-52428973 None:intergenic 35.0%
CTGAAGATACTCTTTCTGAA+TGG + chr4_4:52429108-52429127 Msa0687540:CDS 35.0%
GTTTATCTACCTATTGATCC+TGG + chr4_4:52429137-52429156 Msa0687540:CDS 35.0%
ATATCAAGAAGAACAACACC+AGG - chr4_4:52429158-52429177 None:intergenic 35.0%
AAACACTTGTGAGACTGTTT+GGG - chr4_4:52429950-52429969 None:intergenic 35.0%
TAAACACTTGTGAGACTGTT+TGG - chr4_4:52429951-52429970 None:intergenic 35.0%
ACCATCTTTAGTCTCCAAAA+GGG - chr4_4:52430325-52430344 None:intergenic 35.0%
!! TAAAGATGGTGGAAGAACTT+GGG + chr4_4:52430335-52430354 Msa0687540:CDS 35.0%
ACATAAGTTGTTGAATGTGC+AGG + chr4_4:52430817-52430836 Msa0687540:intron 35.0%
GAATGTGCAGGTATACATAA+AGG + chr4_4:52430829-52430848 Msa0687540:intron 35.0%
AAACAGAGGATACAATTGGA+AGG + chr4_4:52430910-52430929 Msa0687540:CDS 35.0%
CAGTTACATCAAACGAAGTT+TGG - chr4_4:52430996-52431015 None:intergenic 35.0%
! TGGATCCATAATGCCATTTA+AGG + chr4_4:52431045-52431064 Msa0687540:intron 35.0%
GAATGTAACTCTTTCAAGCT+AGG + chr4_4:52431067-52431086 Msa0687540:intron 35.0%
TAATACATTTGGAAGTAGGG+TGG + chr4_4:52431139-52431158 Msa0687540:intron 35.0%
!! ACAGTTTCTAGTGGTATTAG+TGG + chr4_4:52431313-52431332 Msa0687540:CDS 35.0%
! TGCTTTTGCTTCTATTTGCT+TGG + chr4_4:52431478-52431497 Msa0687540:intron 35.0%
ATCCAGGTGATATCATTGAT+AGG + chr4_4:52431747-52431766 Msa0687540:intron 35.0%
ATCCTATCAATGATATCACC+TGG - chr4_4:52431752-52431771 None:intergenic 35.0%
!!! AGCAGAATTTTTTCTTCAGG+AGG - chr4_4:52431778-52431797 None:intergenic 35.0%
GTCTTAATGTCTCGAATAGT+TGG + chr4_4:52431904-52431923 Msa0687540:intron 35.0%
ACCAACCAAAATGATATCTC+TGG - chr4_4:52431959-52431978 None:intergenic 35.0%
!! AGACTTTGAAATGGGTGAAA+AGG - chr4_4:52432262-52432281 None:intergenic 35.0%
! GTTTTACATCCTGTAGAAGT+AGG + chr4_4:52432558-52432577 Msa0687540:intron 35.0%
AAAATTATGGATACAGGACG+AGG + chr4_4:52433281-52433300 Msa0687540:intron 35.0%
CTCTTGAGAACTAATAATGG+TGG + chr4_4:52433330-52433349 Msa0687540:CDS 35.0%
AGGAGTAATACAAAGACCAA+TGG - chr4_4:52433564-52433583 None:intergenic 35.0%
!! TAAAGGAGGTACTCTTACTA+AGG - chr4_4:52433759-52433778 None:intergenic 35.0%
!! AAGTGGAAATTTTGGTAGCT+GGG - chr4_4:52433804-52433823 None:intergenic 35.0%
CTACCAAAATTTCCACTTCA+CGG + chr4_4:52433806-52433825 Msa0687540:intron 35.0%
GTTAGAATTAGAGAAAGGTG+AGG - chr4_4:52433900-52433919 None:intergenic 35.0%
AGCAGGTTAGAATTAGAGAA+AGG - chr4_4:52433905-52433924 None:intergenic 35.0%
GATGTGGAAGAAAGAGAAAA+AGG - chr4_4:52433957-52433976 None:intergenic 35.0%
TATGGTGCATGTTTATAGGA+GGG - chr4_4:52434064-52434083 None:intergenic 35.0%
ATCCGTTATATTGTTAGCAC+AGG + chr4_4:52434119-52434138 Msa0687540:intron 35.0%
! AGGTTCATTGATGACAAGAA+GGG + chr4_4:52434247-52434266 Msa0687540:intron 35.0%
TGACAAGAAGGGATTTGTAT+TGG + chr4_4:52434258-52434277 Msa0687540:CDS 35.0%
GACAAGAAGGGATTTGTATT+GGG + chr4_4:52434259-52434278 Msa0687540:CDS 35.0%
GGATTTGTATTGGGAAATGA+TGG + chr4_4:52434268-52434287 Msa0687540:CDS 35.0%
ATACTGAAACTAAGAATGCC+TGG + chr4_4:52434683-52434702 Msa0687540:intron 35.0%
CCATGTAAATCAGAAAAACC+AGG - chr4_4:52434718-52434737 None:intergenic 35.0%
!! CCTGGTTTTTCTGATTTACA+TGG + chr4_4:52434715-52434734 Msa0687540:intron 35.0%
CAAAATTAATGTTCCCATGG+AGG - chr4_4:52434824-52434843 None:intergenic 35.0%
! CTCCATGGGAACATTAATTT+TGG + chr4_4:52434822-52434841 Msa0687540:intron 35.0%
! CCATGGGAACATTAATTTTG+GGG + chr4_4:52434824-52434843 Msa0687540:intron 35.0%
! CATGGGAACATTAATTTTGG+GGG + chr4_4:52434825-52434844 Msa0687540:intron 35.0%
ATAGATCCAAGTTAGAACAC+TGG + chr4_4:52434925-52434944 Msa0687540:intron 35.0%
CTTAAACCAGTGTTCTAACT+TGG - chr4_4:52434934-52434953 None:intergenic 35.0%
!! CAAGTTAGAACACTGGTTTA+AGG + chr4_4:52434932-52434951 Msa0687540:intron 35.0%
!! CATTTTTCAGCATGACATCA+AGG - chr4_4:52435088-52435107 None:intergenic 35.0%
ATGTCATGCTGAAAAATGTG+AGG + chr4_4:52435090-52435109 Msa0687540:three_prime_UTR 35.0%
GAACAAAGTGTGTGTGTGTA+TGG - chr4_4:52428866-52428885 None:intergenic 40.0%
AGGTTTCGGAGAATGAATGA+TGG - chr4_4:52428982-52429001 None:intergenic 40.0%
!! AATGAACTGTCTTCTGGTTC+TGG - chr4_4:52429039-52429058 None:intergenic 40.0%
TTCTGCAATGAACTGTCTTC+TGG - chr4_4:52429045-52429064 None:intergenic 40.0%
AGAACAACACCAGGATCAAT+AGG - chr4_4:52429149-52429168 None:intergenic 40.0%
! TTTTGCCTACATTGTGTGAC+TGG + chr4_4:52429263-52429282 Msa0687540:intron 40.0%
CAATTCCAGTCACACAATGT+AGG - chr4_4:52429271-52429290 None:intergenic 40.0%
TCCTCTAAGTGCCTATGAAT+AGG + chr4_4:52429782-52429801 Msa0687540:intron 40.0%
CTTATGGACATGTCGTAAGT+TGG + chr4_4:52430095-52430114 Msa0687540:intron 40.0%
! AAATGGAAACGGATTTGTCC+TGG + chr4_4:52430272-52430291 Msa0687540:intron 40.0%
!! ACCCTTTTGGAGACTAAAGA+TGG + chr4_4:52430321-52430340 Msa0687540:CDS 40.0%
CACCATCTTTAGTCTCCAAA+AGG - chr4_4:52430326-52430345 None:intergenic 40.0%
!! CTTTTGGAGACTAAAGATGG+TGG + chr4_4:52430324-52430343 Msa0687540:CDS 40.0%
!! CTAAAGATGGTGGAAGAACT+TGG + chr4_4:52430334-52430353 Msa0687540:CDS 40.0%
AAATCTTCATCTTCTGCGGA+TGG - chr4_4:52430375-52430394 None:intergenic 40.0%
ATCAGCTTCAAAGGGAAAGA+AGG + chr4_4:52430414-52430433 Msa0687540:CDS 40.0%
GGAGTGTACAATAGAATTGC+AGG - chr4_4:52430456-52430475 None:intergenic 40.0%
ATTAGTAGTAGGAGGAGTAG+TGG + chr4_4:52430600-52430619 Msa0687540:intron 40.0%
! ACATAGCTTTTGCGTTGAGT+TGG + chr4_4:52430654-52430673 Msa0687540:intron 40.0%
CCAATTGTATCCTCTGTTTG+AGG - chr4_4:52430909-52430928 None:intergenic 40.0%
CCTCAAACAGAGGATACAAT+TGG + chr4_4:52430906-52430925 Msa0687540:CDS 40.0%
!! CACTAGAAACTGTTCTGAAG+AGG - chr4_4:52431306-52431325 None:intergenic 40.0%
! CTCTTCAGAACAGTTTCTAG+TGG + chr4_4:52431304-52431323 Msa0687540:intron 40.0%
! GTGAGGCTTTTACTTAGTGA+TGG + chr4_4:52431445-52431464 Msa0687540:intron 40.0%
!! TTTACTTTTGGCATGCCATG+TGG + chr4_4:52431505-52431524 Msa0687540:intron 40.0%
CAGTGCAAAAAGCAAAAGAG+AGG - chr4_4:52431823-52431842 None:intergenic 40.0%
AATGTCTCGAATAGTTGGCT+TGG + chr4_4:52431909-52431928 Msa0687540:intron 40.0%
! ATGTCTCGAATAGTTGGCTT+GGG + chr4_4:52431910-52431929 Msa0687540:intron 40.0%
!! GCCAGAGATATCATTTTGGT+TGG + chr4_4:52431955-52431974 Msa0687540:intron 40.0%
! GGTAGTCTTTTTCTCAGCAA+AGG + chr4_4:52432127-52432146 Msa0687540:CDS 40.0%
!! TTTTTCTCAGCAAAGGCACA+GGG + chr4_4:52432134-52432153 Msa0687540:CDS 40.0%
GTGTACCCATATGATACTAG+TGG + chr4_4:52432184-52432203 Msa0687540:intron 40.0%
GAAGGCCACTAGTATCATAT+GGG - chr4_4:52432192-52432211 None:intergenic 40.0%
AAGGGAATGAGTGAAAAGGA+AGG - chr4_4:52432210-52432229 None:intergenic 40.0%
CACCCATTTCAAAGTCTTTC+TGG + chr4_4:52432265-52432284 Msa0687540:intron 40.0%
! GTTTTGTCACACTTTTCACG+TGG + chr4_4:52432323-52432342 Msa0687540:intron 40.0%
CTGCAAGATAGAGATAGAGA+TGG - chr4_4:52432355-52432374 None:intergenic 40.0%
ATGAAAAGTGGACAGCACAA+GGG - chr4_4:52432471-52432490 None:intergenic 40.0%
AATGAAAAGTGGACAGCACA+AGG - chr4_4:52432472-52432491 None:intergenic 40.0%
!! GTGCTGTCCACTTTTCATTT+TGG + chr4_4:52432473-52432492 Msa0687540:intron 40.0%
AGAAGTAGGGAGAAGTGAAA+AGG + chr4_4:52432572-52432591 Msa0687540:intron 40.0%
GAAGTAGGGAGAAGTGAAAA+GGG + chr4_4:52432573-52432592 Msa0687540:intron 40.0%
AAATTCCTGTTCAAAGCCGA+GGG + chr4_4:52432844-52432863 Msa0687540:CDS 40.0%
TCGTATTGAAAGAACTGCAG+AGG - chr4_4:52433198-52433217 None:intergenic 40.0%
CTAATAATGGTGGCAAGTCA+TGG + chr4_4:52433340-52433359 Msa0687540:CDS 40.0%
GAGCTCTACAAGTAAATTGG+AGG - chr4_4:52433484-52433503 None:intergenic 40.0%
CGAGAGCTCTACAAGTAAAT+TGG - chr4_4:52433487-52433506 None:intergenic 40.0%
TATCAACAACATGAGGAACC+TGG - chr4_4:52433521-52433540 None:intergenic 40.0%
! CTCCACTTCTTTTGTTCCAT+TGG + chr4_4:52433545-52433564 Msa0687540:intron 40.0%
GACCAATGGAACAAAAGAAG+TGG - chr4_4:52433550-52433569 None:intergenic 40.0%
GCATCTCTTGAGAATAGGAA+AGG - chr4_4:52433584-52433603 None:intergenic 40.0%
AGGAGTTAGCATCTGTATCA+TGG + chr4_4:52433664-52433683 Msa0687540:intron 40.0%
ATGGATGGAGATGATCTACT+TGG + chr4_4:52433712-52433731 Msa0687540:intron 40.0%
CTTGGAGAAATGAAAACGGT+CGG + chr4_4:52433730-52433749 Msa0687540:intron 40.0%
AGTACCTCCTTTAGTGAGAT+AGG + chr4_4:52433766-52433785 Msa0687540:intron 40.0%
GTACCTCCTTTAGTGAGATA+GGG + chr4_4:52433767-52433786 Msa0687540:intron 40.0%
AATCCCTATCTCACTAAAGG+AGG - chr4_4:52433773-52433792 None:intergenic 40.0%
!! GAAGTGGAAATTTTGGTAGC+TGG - chr4_4:52433805-52433824 None:intergenic 40.0%
! GATCCGTGAAGTGGAAATTT+TGG - chr4_4:52433812-52433831 None:intergenic 40.0%
ATACCCCCTTCATTCTGTTA+CGG + chr4_4:52433834-52433853 Msa0687540:intron 40.0%
!! GACAAAGAGGAGGTATTTAG+AGG - chr4_4:52433861-52433880 None:intergenic 40.0%
AAAGGTGAGGAAATCATTGG+CGG - chr4_4:52433887-52433906 None:intergenic 40.0%
GAGAAAGGTGAGGAAATCAT+TGG - chr4_4:52433890-52433909 None:intergenic 40.0%
AAAGAGAAAAAGGAGCAGGA+AGG - chr4_4:52433947-52433966 None:intergenic 40.0%
GAAGAAAGAGAAAAAGGAGC+AGG - chr4_4:52433951-52433970 None:intergenic 40.0%
GTTTATAGGAGGGGGAATAA+AGG - chr4_4:52434054-52434073 None:intergenic 40.0%
ATGGTGCATGTTTATAGGAG+GGG - chr4_4:52434063-52434082 None:intergenic 40.0%
CTATGGTGCATGTTTATAGG+AGG - chr4_4:52434065-52434084 None:intergenic 40.0%
CTCCTATAAACATGCACCAT+AGG + chr4_4:52434063-52434082 Msa0687540:intron 40.0%
AATTGCATCTGATAGGCCTA+TGG - chr4_4:52434082-52434101 None:intergenic 40.0%
! TAAATGGTTTCACTTGCTGC+AGG + chr4_4:52434227-52434246 Msa0687540:intron 40.0%
! CAGGTTCATTGATGACAAGA+AGG + chr4_4:52434246-52434265 Msa0687540:intron 40.0%
AAAACCAGGAGTTTCTTTCC+AGG - chr4_4:52434704-52434723 None:intergenic 40.0%
! TTATATGTGCTGATCCTCCA+TGG + chr4_4:52434807-52434826 Msa0687540:intron 40.0%
! TATATGTGCTGATCCTCCAT+GGG + chr4_4:52434808-52434827 Msa0687540:intron 40.0%
CCCCAAAATTAATGTTCCCA+TGG - chr4_4:52434827-52434846 None:intergenic 40.0%
TGACAACGACATATAGAGTC+AGG + chr4_4:52434870-52434889 Msa0687540:intron 40.0%
GCTCTCTTCAATACTAAGCA+TGG - chr4_4:52435047-52435066 None:intergenic 40.0%
CTGAAAAATGTGAGGAGATG+TGG + chr4_4:52435098-52435117 Msa0687540:three_prime_UTR 40.0%
TGTTCCTTCCTTCGTTCCAA+TGG + chr4_4:52428881-52428900 Msa0687540:exon 45.0%
! AGATAACGGTCTGCATAGTG+TGG - chr4_4:52428940-52428959 None:intergenic 45.0%
!! AACTGTCTTCTGGTTCTGGA+AGG - chr4_4:52429035-52429054 None:intergenic 45.0%
AACAAGCACGGATATAGCAG+TGG - chr4_4:52429069-52429088 None:intergenic 45.0%
CAACTGAGAAGGAACAAGCA+CGG - chr4_4:52429081-52429100 None:intergenic 45.0%
TCAGACTTTGCCAACTGAGA+AGG - chr4_4:52429092-52429111 None:intergenic 45.0%
GTTCCTGAAGATCCTAACCA+TGG + chr4_4:52429185-52429204 Msa0687540:CDS 45.0%
TGACCATGGTTAGGATCTTC+AGG - chr4_4:52429191-52429210 None:intergenic 45.0%
GCCTATTCATAGGCACTTAG+AGG - chr4_4:52429786-52429805 None:intergenic 45.0%
! TGTCCTGGTAGGTTTTCTTC+TGG + chr4_4:52430287-52430306 Msa0687540:intron 45.0%
! GTCCTGGTAGGTTTTCTTCT+GGG + chr4_4:52430288-52430307 Msa0687540:intron 45.0%
! TCCTGGTAGGTTTTCTTCTG+GGG + chr4_4:52430289-52430308 Msa0687540:intron 45.0%
GCTTCAAAGGGAAAGAAGGA+TGG + chr4_4:52430418-52430437 Msa0687540:CDS 45.0%
CTATTGTACACTCCTGATGC+TGG + chr4_4:52430462-52430481 Msa0687540:CDS 45.0%
AGCATGTATACCATATCGCC+AGG - chr4_4:52430525-52430544 None:intergenic 45.0%
GCAGCAGTAGAAACAAGCAT+TGG - chr4_4:52430558-52430577 None:intergenic 45.0%
TGCTGTTCAGGAATCAGTGT+CGG + chr4_4:52430934-52430953 Msa0687540:CDS 45.0%
!! CAGTGTCGGCTACTCTTAAT+AGG + chr4_4:52430948-52430967 Msa0687540:CDS 45.0%
AGTGGTGCAAGCTATTACAC+TGG + chr4_4:52431331-52431350 Msa0687540:CDS 45.0%
ACTGCAACATACCTTCCATC+GGG - chr4_4:52431382-52431401 None:intergenic 45.0%
GACTGCAACATACCTTCCAT+CGG - chr4_4:52431383-52431402 None:intergenic 45.0%
TATGTTGCAGTCTCAAGTCG+TGG + chr4_4:52431391-52431410 Msa0687540:CDS 45.0%
TGGCAACTTCTACATGACCT+GGG + chr4_4:52431411-52431430 Msa0687540:CDS 45.0%
TGCCAGAAGAATCCAGAACA+TGG + chr4_4:52432063-52432082 Msa0687540:CDS 45.0%
GCCAGAAGAATCCAGAACAT+GGG + chr4_4:52432064-52432083 Msa0687540:CDS 45.0%
! TCCCATGTTCTGGATTCTTC+TGG - chr4_4:52432068-52432087 None:intergenic 45.0%
GAAGAATCCAGAACATGGGA+TGG + chr4_4:52432068-52432087 Msa0687540:CDS 45.0%
!! CTTTTTCTCAGCAAAGGCAC+AGG + chr4_4:52432133-52432152 Msa0687540:CDS 45.0%
!! TTTTCTCAGCAAAGGCACAG+GGG + chr4_4:52432135-52432154 Msa0687540:CDS 45.0%
GGAAGGCCACTAGTATCATA+TGG - chr4_4:52432193-52432212 None:intergenic 45.0%
CCAGAAGGGAATGAGTGAAA+AGG - chr4_4:52432214-52432233 None:intergenic 45.0%
! CCTTTTCACTCATTCCCTTC+TGG + chr4_4:52432211-52432230 Msa0687540:intron 45.0%
TCACTTCTCCCTACTTCTAC+AGG - chr4_4:52432570-52432589 None:intergenic 45.0%
GAAATTCCTGTTCAAAGCCG+AGG + chr4_4:52432843-52432862 Msa0687540:CDS 45.0%
! TGATGTCGGGTATCGTTCAA+CGG + chr4_4:52432878-52432897 Msa0687540:CDS 45.0%
! TGTTGTCAGCAGCTTTGTCA+CGG - chr4_4:52433368-52433387 None:intergenic 45.0%
!! ATGAGGAACCTGGTTTGGTT+GGG - chr4_4:52433511-52433530 None:intergenic 45.0%
ACAACATGAGGAACCTGGTT+TGG - chr4_4:52433516-52433535 None:intergenic 45.0%
AGGACCGTAACAGAATGAAG+GGG - chr4_4:52433841-52433860 None:intergenic 45.0%
GAGGACCGTAACAGAATGAA+GGG - chr4_4:52433842-52433861 None:intergenic 45.0%
AGAGGACCGTAACAGAATGA+AGG - chr4_4:52433843-52433862 None:intergenic 45.0%
TAACAACATGGACAGCTAGC+AGG - chr4_4:52433922-52433941 None:intergenic 45.0%
AGCAGGAAGGAGTAACAACA+TGG - chr4_4:52433934-52433953 None:intergenic 45.0%
TCAACGGAGAAAGGGACAAA+TGG - chr4_4:52433985-52434004 None:intergenic 45.0%
AGTGTGCATCAACGGAGAAA+GGG - chr4_4:52433993-52434012 None:intergenic 45.0%
AAGTGTGCATCAACGGAGAA+AGG - chr4_4:52433994-52434013 None:intergenic 45.0%
! GGTATTGGGTCTAAAGAGCA+AGG - chr4_4:52434018-52434037 None:intergenic 45.0%
TGGTGCATGTTTATAGGAGG+GGG - chr4_4:52434062-52434081 None:intergenic 45.0%
GGCCTATGGTGCATGTTTAT+AGG - chr4_4:52434068-52434087 None:intergenic 45.0%
GATGCAGCTGAAACTACTTG+TGG - chr4_4:52434384-52434403 None:intergenic 45.0%
AATGCCTGGAAAGAAACTCC+TGG + chr4_4:52434697-52434716 Msa0687540:intron 45.0%
GGGGTTAACTAATGCAAGCA+TGG + chr4_4:52434844-52434863 Msa0687540:intron 45.0%
!!! AAATTTTGTAAAATTTAATT+AGG - chr4_4:52429607-52429626 None:intergenic 5.0%
GTGAATTGCAGAGTCGCCAT+TGG - chr4_4:52428900-52428919 None:intergenic 50.0%
TAACGGTCTGCATAGTGTGG+TGG - chr4_4:52428937-52428956 None:intergenic 50.0%
ACGACGAAGCTTCGAGGTTT+CGG - chr4_4:52428996-52429015 None:intergenic 50.0%
GCTTTAACGACGAAGCTTCG+AGG - chr4_4:52429002-52429021 None:intergenic 50.0%
CGTGCTTGTTCCTTCTCAGT+TGG + chr4_4:52429079-52429098 Msa0687540:CDS 50.0%
! GGAAACGGATTTGTCCTGGT+AGG + chr4_4:52430276-52430295 Msa0687540:intron 50.0%
TCCCCAGAAGAAAACCTACC+AGG - chr4_4:52430293-52430312 None:intergenic 50.0%
!! TAGGTTTTCTTCTGGGGACG+AGG + chr4_4:52430295-52430314 Msa0687540:intron 50.0%
TCTGCGGATGGTATAGAACG+TGG - chr4_4:52430363-52430382 None:intergenic 50.0%
AGGGAAAGAAGGATGGATCG+TGG + chr4_4:52430425-52430444 Msa0687540:CDS 50.0%
GGGAAAGAAGGATGGATCGT+GGG + chr4_4:52430426-52430445 Msa0687540:CDS 50.0%
TCCTGATGCTGGAGAGAGTT+GGG + chr4_4:52430473-52430492 Msa0687540:CDS 50.0%
ATGCTGGAGAGAGTTGGGAA+AGG + chr4_4:52430478-52430497 Msa0687540:CDS 50.0%
TGCTGAACTTCCTGGCGATA+TGG + chr4_4:52430512-52430531 Msa0687540:CDS 50.0%
GTAGTAGGAGGAGTAGTGGT+AGG + chr4_4:52430604-52430623 Msa0687540:intron 50.0%
GGCAACTAATGAGAAGAGCG+CGG + chr4_4:52430850-52430869 Msa0687540:CDS 50.0%
! TAATGAGAAGAGCGCGGAGA+TGG + chr4_4:52430856-52430875 Msa0687540:CDS 50.0%
CAATTGGAAGGCTGCTGTTC+AGG + chr4_4:52430922-52430941 Msa0687540:CDS 50.0%
ACTGTCAATCGATCTCCCGA+TGG + chr4_4:52431364-52431383 Msa0687540:CDS 50.0%
TCAATCGATCTCCCGATGGA+AGG + chr4_4:52431368-52431387 Msa0687540:CDS 50.0%
GTGGCAACTTCTACATGACC+TGG + chr4_4:52431410-52431429 Msa0687540:CDS 50.0%
AGTAAAAGCCTCACCTGACC+AGG - chr4_4:52431439-52431458 None:intergenic 50.0%
AAGGATGAGCTGACGCATCA+TGG - chr4_4:52431875-52431894 None:intergenic 50.0%
CTGGCAACTGCTCTGTTATG+TGG - chr4_4:52432049-52432068 None:intergenic 50.0%
AACATGGGATGGAGAGCTGA+TGG + chr4_4:52432079-52432098 Msa0687540:CDS 50.0%
CATCAAGAATGCCGAACCCT+CGG - chr4_4:52432863-52432882 None:intergenic 50.0%
GGGTTCGGCATTCTTGATGT+CGG + chr4_4:52432864-52432883 Msa0687540:CDS 50.0%
GGTTCGGCATTCTTGATGTC+GGG + chr4_4:52432865-52432884 Msa0687540:CDS 50.0%
TATGGATACAGGACGAGGCT+TGG + chr4_4:52433286-52433305 Msa0687540:intron 50.0%
ATGGATACAGGACGAGGCTT+GGG + chr4_4:52433287-52433306 Msa0687540:intron 50.0%
!! CATGAGGAACCTGGTTTGGT+TGG - chr4_4:52433512-52433531 None:intergenic 50.0%
GGACCGTAACAGAATGAAGG+GGG - chr4_4:52433840-52433859 None:intergenic 50.0%
TCATTGGCGGAGAGACAAAG+AGG - chr4_4:52433874-52433893 None:intergenic 50.0%
GCAAGGCAAGTGTGCATCAA+CGG - chr4_4:52434001-52434020 None:intergenic 50.0%
GTCGCCATTGGAACGAAGGA+AGG - chr4_4:52428888-52428907 None:intergenic 55.0%
CAGAGTCGCCATTGGAACGA+AGG - chr4_4:52428892-52428911 None:intergenic 55.0%
CTCCTGATGCTGGAGAGAGT+TGG + chr4_4:52430472-52430491 Msa0687540:CDS 55.0%
TCCCAACTCTCTCCAGCATC+AGG - chr4_4:52430477-52430496 None:intergenic 55.0%
! CCAGGAAGTTCAGCACTGAG+TGG - chr4_4:52430507-52430526 None:intergenic 55.0%
! CCACTCAGTGCTGAACTTCC+TGG + chr4_4:52430504-52430523 Msa0687540:CDS 55.0%
GCGGAGATGGTGACTGATGA+AGG + chr4_4:52430869-52430888 Msa0687540:CDS 55.0%
TTCTACATGACCTGGGAGCC+TGG + chr4_4:52431418-52431437 Msa0687540:CDS 55.0%
TGACGCATCATGGCGCATTG+AGG - chr4_4:52431865-52431884 None:intergenic 55.0%
CAGCTCTCCATCCCATGTTC+TGG - chr4_4:52432078-52432097 None:intergenic 55.0%
ATGGGATGGAGAGCTGATGG+TGG + chr4_4:52432082-52432101 Msa0687540:CDS 55.0%
! GGTCTCTGGCTTCTTGTTCG+TGG + chr4_4:52432103-52432122 Msa0687540:CDS 55.0%
! CTCTGGCTTCTTGTTCGTGG+AGG + chr4_4:52432106-52432125 Msa0687540:CDS 55.0%
CCTGTTCAAAGCCGAGGGTT+CGG + chr4_4:52432849-52432868 Msa0687540:CDS 55.0%
! GGGGTATCTGATCCGTGAAG+TGG - chr4_4:52433821-52433840 None:intergenic 55.0%
TTGGCGGAGAGACAAAGAGG+AGG - chr4_4:52433871-52433890 None:intergenic 55.0%
GGGACAAATGGCTGCAGATG+TGG - chr4_4:52433973-52433992 None:intergenic 55.0%
GGAGTCTTGCTTCGCTACCT+TGG + chr4_4:52434289-52434308 Msa0687540:CDS 55.0%
! GGGGACGAGGCAAACCCTTT+TGG + chr4_4:52430308-52430327 Msa0687540:CDS 60.0%
!! GGAGAGCTGATGGTGGTCTC+TGG + chr4_4:52432089-52432108 Msa0687540:CDS 60.0%
!! CCGAACCCTCGGCTTTGAAC+AGG - chr4_4:52432852-52432871 None:intergenic 60.0%
GCTCTCGTCCCAACCAAACC+AGG + chr4_4:52433500-52433519 Msa0687540:intron 60.0%
CATGACCTGGGAGCCTGGTC+AGG + chr4_4:52431423-52431442 Msa0687540:CDS 65.0%
CCTCACCTGACCAGGCTCCC+AGG - chr4_4:52431431-52431450 None:intergenic 70.0%
CCTGGGAGCCTGGTCAGGTG+AGG + chr4_4:52431428-52431447 Msa0687540:intron 70.0%
CAGGACGAGGCTTGGGCAGC+AGG + chr4_4:52433294-52433313 Msa0687540:intron 70.0%
GACGAGGCTTGGGCAGCAGG+TGG + chr4_4:52433297-52433316 Msa0687540:CDS 70.0%
GCTTGGGCAGCAGGTGGCAG+TGG + chr4_4:52433303-52433322 Msa0687540:CDS 70.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 52428822 52435251 52428822 ID=Msa0687540;Name=Msa0687540
chr4_4 mRNA 52428822 52435251 52428822 ID=Msa0687540-mRNA-1;Parent=Msa0687540;Name=Msa0687540-mRNA-1;_AED=0.03;_eAED=0.03;_QI=78|1|1|1|0.87|0.77|9|268|395
chr4_4 exon 52428822 52429206 52428822 ID=Msa0687540-mRNA-1:exon:13720;Parent=Msa0687540-mRNA-1
chr4_4 exon 52430298 52430533 52430298 ID=Msa0687540-mRNA-1:exon:13721;Parent=Msa0687540-mRNA-1
chr4_4 exon 52430839 52430969 52430839 ID=Msa0687540-mRNA-1:exon:13722;Parent=Msa0687540-mRNA-1
chr4_4 exon 52431312 52431444 52431312 ID=Msa0687540-mRNA-1:exon:13723;Parent=Msa0687540-mRNA-1
chr4_4 exon 52432034 52432156 52432034 ID=Msa0687540-mRNA-1:exon:13724;Parent=Msa0687540-mRNA-1
chr4_4 exon 52432825 52432899 52432825 ID=Msa0687540-mRNA-1:exon:13725;Parent=Msa0687540-mRNA-1
chr4_4 exon 52433297 52433412 52433297 ID=Msa0687540-mRNA-1:exon:13726;Parent=Msa0687540-mRNA-1
chr4_4 exon 52434249 52434332 52434249 ID=Msa0687540-mRNA-1:exon:13727;Parent=Msa0687540-mRNA-1
chr4_4 exon 52435001 52435251 52435001 ID=Msa0687540-mRNA-1:exon:13728;Parent=Msa0687540-mRNA-1
chr4_4 five_prime_UTR 52428822 52428899 52428822 ID=Msa0687540-mRNA-1:five_prime_utr;Parent=Msa0687540-mRNA-1
chr4_4 CDS 52428900 52429206 52428900 ID=Msa0687540-mRNA-1:cds;Parent=Msa0687540-mRNA-1
chr4_4 CDS 52430298 52430533 52430298 ID=Msa0687540-mRNA-1:cds;Parent=Msa0687540-mRNA-1
chr4_4 CDS 52430839 52430969 52430839 ID=Msa0687540-mRNA-1:cds;Parent=Msa0687540-mRNA-1
chr4_4 CDS 52431312 52431444 52431312 ID=Msa0687540-mRNA-1:cds;Parent=Msa0687540-mRNA-1
chr4_4 CDS 52432034 52432156 52432034 ID=Msa0687540-mRNA-1:cds;Parent=Msa0687540-mRNA-1
chr4_4 CDS 52432825 52432899 52432825 ID=Msa0687540-mRNA-1:cds;Parent=Msa0687540-mRNA-1
chr4_4 CDS 52433297 52433412 52433297 ID=Msa0687540-mRNA-1:cds;Parent=Msa0687540-mRNA-1
chr4_4 CDS 52434249 52434315 52434249 ID=Msa0687540-mRNA-1:cds;Parent=Msa0687540-mRNA-1
chr4_4 three_prime_UTR 52434316 52434332 52434316 ID=Msa0687540-mRNA-1:three_prime_utr;Parent=Msa0687540-mRNA-1
chr4_4 three_prime_UTR 52435001 52435251 52435001 ID=Msa0687540-mRNA-1:three_prime_utr;Parent=Msa0687540-mRNA-1
Gene Sequence

>Msa0687540

ATGGCGACTCTGCAATTCACATTCACAGACTCAACCACCACACTATGCAGACCGTTATCTCAACTACCTTCTTCTAAATCCATCATTCATTCTCCGAAACCTCGAAGCTTCGTCGTTAAAGCTTCTCTCGAACCTTCCAGAACCAGAAGACAGTTCATTGCAGAAACCACTGCTATATCCGTGCTTGTTCCTTCTCAGTTGGCAAAGTCTGAAGATACTCTTTCTGAATGGGAAAGAGTTTATCTACCTATTGATCCTGGTGTTGTTCTTCTTGATATCGCTTTTGTTCCTGAAGATCCTAACCATGGTTTTCTTCTGGGGACGAGGCAAACCCTTTTGGAGACTAAAGATGGTGGAAGAACTTGGGCTCCACGTTCTATACCATCCGCAGAAGATGAAGATTTTAACTATAGGTTTAATTCTATCAGCTTCAAAGGGAAAGAAGGATGGATCGTGGGAAAACCTGCAATTCTATTGTACACTCCTGATGCTGGAGAGAGTTGGGAAAGGATACCACTCAGTGCTGAACTTCCTGGCGATATGGTATACATAAAGGCAACTAATGAGAAGAGCGCGGAGATGGTGACTGATGAAGGTGCAATATATGTTACCTCAAACAGAGGATACAATTGGAAGGCTGCTGTTCAGGAATCAGTGTCGGCTACTCTTAATAGAACAGTTTCTAGTGGTATTAGTGGTGCAAGCTATTACACTGGAACTTTCAATACTGTCAATCGATCTCCCGATGGAAGGTATGTTGCAGTCTCAAGTCGTGGCAACTTCTACATGACCTGGGAGCCTGGTCAGGCATACTGGCAGCCACATAACAGAGCAGTTGCCAGAAGAATCCAGAACATGGGATGGAGAGCTGATGGTGGTCTCTGGCTTCTTGTTCGTGGAGGTAGTCTTTTTCTCAGCAAAGGCACAGGGATAACTGAAGAGTTTGAGGAAATTCCTGTTCAAAGCCGAGGGTTCGGCATTCTTGATGTCGGGTATCGTTCAACGGACGAGGCTTGGGCAGCAGGTGGCAGTGGTATTCTCTTGAGAACTAATAATGGTGGCAAGTCATGGATCCGTGACAAAGCTGCTGACAACATTGCTGCAAATTTATACTCAGTAAAGTTCATTGATGACAAGAAGGGATTTGTATTGGGAAATGATGGAGTCTTGCTTCGCTACCTTGGATAG

Protein sequence

>Msa0687540

MATLQFTFTDSTTTLCRPLSQLPSSKSIIHSPKPRSFVVKASLEPSRTRRQFIAETTAISVLVPSQLAKSEDTLSEWERVYLPIDPGVVLLDIAFVPEDPNHGFLLGTRQTLLETKDGGRTWAPRSIPSAEDEDFNYRFNSISFKGKEGWIVGKPAILLYTPDAGESWERIPLSAELPGDMVYIKATNEKSAEMVTDEGAIYVTSNRGYNWKAAVQESVSATLNRTVSSGISGASYYTGTFNTVNRSPDGRYVAVSSRGNFYMTWEPGQAYWQPHNRAVARRIQNMGWRADGGLWLLVRGGSLFLSKGTGITEEFEEIPVQSRGFGILDVGYRSTDEAWAAGGSGILLRTNNGGKSWIRDKAADNIAANLYSVKFIDDKKGFVLGNDGVLLRYLG*