AlfalfaGEDB | Msa0710950

M. sativa cultivar zhongmu-4 / Msa0710950

KEGG: -
GO: GO:0000120 GO:0000500 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0005730 GO:0006355 GO:0006356 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045943 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
PFAM: PF02201.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0710950	XP_003610630.1	94.406	143	6	1	1	141	1	143	2.42e-75	231

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0710950	sp\|Q05024\|TRI1_YEAST	40.278	72	41	1	70	141	126	195	1.38e-12	65.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0710950	G7K0Y0	94.406	143	6	1	1	141	1	143	1.15e-75	231

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TFs/TRs:

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Gene ID	Type	Classification
Msa0710950	TR	SWI/SNF-BAF60b

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000220	Msa0710950	0.862114	6.372090e-64	-8.615850e-47
Msa0000780	Msa0710950	0.809100	2.235417e-50	-8.615850e-47
Msa0001420	Msa0710950	0.850914	1.247358e-60	-8.615850e-47
Msa0001460	Msa0710950	0.847073	1.456348e-59	-8.615850e-47
Msa0001510	Msa0710950	0.864321	1.322444e-64	-8.615850e-47
Msa0001540	Msa0710950	0.893580	5.508399e-75	-8.615850e-47
Msa0002060	Msa0710950	0.821517	3.870524e-53	-8.615850e-47
Msa0002700	Msa0710950	0.803199	3.907700e-49	-8.615850e-47
Msa0005690	Msa0710950	0.831982	1.225894e-55	-8.615850e-47
Msa0006580	Msa0710950	0.809718	1.647549e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0710950	MtrunA17_Chr5g0393651	94.406	143	6	1	1	141	1	143	2.22e-79	231
Msa0710950	MtrunA17_Chr5g0408111	47.436	78	41	0	63	140	54	131	1.15e-24	92.0
Msa0710950	MtrunA17_Chr3g0099661	47.934	121	11	5	21	137	29	101	7.12e-18	79.0
Msa0710950	MtrunA17_Chr3g0100001	42.424	66	38	0	74	139	30	95	5.66e-17	71.2
Msa0710950	MtrunA17_Chr3g0100321	41.111	90	51	2	52	140	147	235	9.34e-16	72.4
Msa0710950	MtrunA17_Chr5g0402651	40.580	69	40	1	70	138	138	205	5.27e-15	70.1
Msa0710950	MtrunA17_Chr5g0402651	37.805	82	50	1	59	140	260	340	4.56e-14	67.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0710950	AT2G14880.1	56.463	147	51	6	1	140	1	141	2.30e-42	137
Msa0710950	AT4G34290.1	56.098	123	42	2	30	140	22	144	2.67e-36	122
Msa0710950	AT3G03590.1	51.899	79	38	0	63	141	63	141	1.42e-25	94.7
Msa0710950	AT1G31760.1	40.594	101	59	1	40	139	8	108	6.24e-25	92.4
Msa0710950	AT2G35605.1	47.253	91	48	0	49	139	15	105	1.48e-24	91.3
Msa0710950	AT2G14880.3	52.294	109	39	6	1	102	1	103	5.82e-21	82.0
Msa0710950	AT2G14880.2	52.294	109	39	6	1	102	1	103	5.82e-21	82.0
Msa0710950	AT4G22360.1	33.929	112	68	2	29	140	167	272	1.19e-15	72.8
Msa0710950	AT4G26810.2	34.000	100	61	2	40	139	1	95	1.55e-15	68.2
Msa0710950	AT4G26810.1	34.000	100	61	2	40	139	1	95	1.55e-15	68.2

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Find 63 sgRNAs with CRISPR-Local

Find 240 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTGAAGAAGGTATTTGC+AGG	0.431242	5_1:+2863868	Msa0710950:CDS
AAAGGCTACTACTATGTTGC+AGG	0.396055	5_1:-2864045	None:intergenic
AAATCTCGGGTTGGCCGACG+AGG	0.609292	5_1:-2862858	None:intergenic
AACTAAACCTTGAGACTTAG+TGG	0.395134	5_1:-2863961	None:intergenic
AACTGAAGAAGGTATTTGCA+GGG	0.589332	5_1:+2863869	Msa0710950:CDS
AAGATTGTGTTCCTTAATGT+GGG	0.565657	5_1:-2862911	None:intergenic
ACAGTTGAGCGGGGTGAGTA+AGG	0.392563	5_1:+2862537	None:intergenic
ACTTCCTTAATTGAAGGCAA+AGG	0.598604	5_1:+2863938	Msa0710950:exon
AGGAGATGATAATAATAGTC+CGG	0.546560	5_1:-2862650	None:intergenic
AGTGAAGATGGCGGTTTCAA+TGG	0.537531	5_1:+2862624	Msa0710950:exon

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGGAGATGATAATAATAGTC+CGG	-	chr5_1:2862653-2862672	None:intergenic	30.0%
AAGATTGTGTTCCTTAATGT+GGG	-	chr5_1:2862914-2862933	None:intergenic	30.0%
TAAACTGCATAGATTCAGAA+TGG	+	chr5_1:2863033-2863052	Msa0710950:intron	30.0%
TTGGGAATAATCGGTTATTA+TGG	+	chr5_1:2863204-2863223	Msa0710950:intron	30.0%
TGGGAATAATCGGTTATTAT+GGG	+	chr5_1:2863205-2863224	Msa0710950:intron	30.0%
AAATTGGATTCCCATTTAGT+TGG	-	chr5_1:2863292-2863311	None:intergenic	30.0%
AAATTTGTGCAATTGAAACG+CGG	-	chr5_1:2863447-2863466	None:intergenic	30.0%
TCCATAAATTGAATGTTCTC+TGG	+	chr5_1:2863712-2863731	Msa0710950:intron	30.0%
CCATAAATTGAATGTTCTCT+GGG	+	chr5_1:2863713-2863732	Msa0710950:intron	30.0%
GTGTATGGAACTGTTATATT+TGG	+	chr5_1:2864011-2864030	Msa0710950:three_prime_UTR	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_1	gene	2862545	2864256	2862545	ID=Msa0710950;Name=Msa0710950
chr5_1	mRNA	2862545	2864256	2862545	ID=Msa0710950-mRNA-1;Parent=Msa0710950;Name=Msa0710950-mRNA-1;_AED=0.00;_eAED=0.00;_QI=86\|1\|1\|1\|1\|1\|2\|305\|141
chr5_1	exon	2862545	2862936	2862545	ID=Msa0710950-mRNA-1:exon:909;Parent=Msa0710950-mRNA-1
chr5_1	exon	2863832	2864256	2863832	ID=Msa0710950-mRNA-1:exon:910;Parent=Msa0710950-mRNA-1
chr5_1	five_prime_UTR	2862545	2862630	2862545	ID=Msa0710950-mRNA-1:five_prime_utr;Parent=Msa0710950-mRNA-1
chr5_1	CDS	2862631	2862936	2862631	ID=Msa0710950-mRNA-1:cds;Parent=Msa0710950-mRNA-1
chr5_1	CDS	2863832	2863951	2863832	ID=Msa0710950-mRNA-1:cds;Parent=Msa0710950-mRNA-1
chr5_1	three_prime_UTR	2863952	2864256	2863952	ID=Msa0710950-mRNA-1:three_prime_utr;Parent=Msa0710950-mRNA-1

Gene Sequence

>Msa0710950

ATGGCGGTTTCAATGGCTACCGGACTATTATTATCATCTCCTCCTCTAACTCTCAGGACTCCAAGGTTTGCGTTTCCCACACCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTGCGGATGGCTCCACTCCGAACAGTTACTTCCGCCACCGTCTCTCAGCCTCCACCCACCGGAGGCAAAATTCGCGGTATTATGAAACCTAAAAAAATCTCCCCCGAGATGCAAGACCTCGTCGGCCAACCCGAGATTTCCCGAACCCAAGCCCTCAAGAGCATTTGGGCCCACATTAAGGAACACAATCTTCAGAACCCTGAGAAAAAGAGGCTTATTCGCTGTGATGAGAAACTGAAGAAGGTATTTGCAGGGAGAGATGAAGTTGATATGCTTGAGATTGCTGGCTTGATTAGCCCTCACTTCCTTAATTGA

Protein sequence

>Msa0710950

MAVSMATGLLLSSPPLTLRTPRFAFPTPSSSSSSSSSLRMAPLRTVTSATVSQPPPTGGKIRGIMKPKKISPEMQDLVGQPEISRTQALKSIWAHIKEHNLQNPEKKRLIRCDEKLKKVFAGRDEVDMLEIAGLISPHFLN*