AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0710950


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0710950 MtrunA17_Chr5g0393651 94.406 143 6 1 1 141 1 143 2.22e-79 231
Msa0710950 MtrunA17_Chr5g0408111 47.436 78 41 0 63 140 54 131 1.15e-24 92.0
Msa0710950 MtrunA17_Chr3g0099661 47.934 121 11 5 21 137 29 101 7.12e-18 79.0
Msa0710950 MtrunA17_Chr3g0100001 42.424 66 38 0 74 139 30 95 5.66e-17 71.2
Msa0710950 MtrunA17_Chr3g0100321 41.111 90 51 2 52 140 147 235 9.34e-16 72.4
Msa0710950 MtrunA17_Chr5g0402651 40.580 69 40 1 70 138 138 205 5.27e-15 70.1
Msa0710950 MtrunA17_Chr5g0402651 37.805 82 50 1 59 140 260 340 4.56e-14 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0710950 AT2G14880.1 56.463 147 51 6 1 140 1 141 2.30e-42 137
Msa0710950 AT4G34290.1 56.098 123 42 2 30 140 22 144 2.67e-36 122
Msa0710950 AT3G03590.1 51.899 79 38 0 63 141 63 141 1.42e-25 94.7
Msa0710950 AT1G31760.1 40.594 101 59 1 40 139 8 108 6.24e-25 92.4
Msa0710950 AT2G35605.1 47.253 91 48 0 49 139 15 105 1.48e-24 91.3
Msa0710950 AT2G14880.3 52.294 109 39 6 1 102 1 103 5.82e-21 82.0
Msa0710950 AT2G14880.2 52.294 109 39 6 1 102 1 103 5.82e-21 82.0
Msa0710950 AT4G22360.1 33.929 112 68 2 29 140 167 272 1.19e-15 72.8
Msa0710950 AT4G26810.2 34.000 100 61 2 40 139 1 95 1.55e-15 68.2
Msa0710950 AT4G26810.1 34.000 100 61 2 40 139 1 95 1.55e-15 68.2
Msa0710950 AT1G49520.1 36.364 88 52 2 52 139 242 325 1.94e-13 66.2
Msa0710950 AT1G49520.1 32.468 77 51 1 63 139 101 176 1.80e-11 60.8
Msa0710950 AT3G48600.1 33.019 106 67 2 40 141 8 113 7.94e-13 62.8
Msa0710950 AT3G19080.2 35.165 91 56 2 48 138 250 337 8.49e-13 64.7
Msa0710950 AT3G19080.2 34.211 76 49 1 63 138 115 189 1.03e-11 61.6
Msa0710950 AT3G19080.1 34.783 92 57 2 48 139 250 338 1.67e-12 63.9
Msa0710950 AT3G19080.1 33.766 77 50 1 63 139 115 190 1.62e-11 60.8
Msa0710950 AT3G19080.4 34.783 92 57 2 48 139 250 338 1.69e-12 63.9
Msa0710950 AT3G19080.4 33.766 77 50 1 63 139 115 190 1.54e-11 61.2
Msa0710950 AT3G19080.3 34.783 92 57 2 48 139 250 338 1.69e-12 63.9
Msa0710950 AT3G19080.3 33.766 77 50 1 63 139 115 190 1.54e-11 61.2
Msa0710950 AT3G48600.2 33.019 106 67 2 40 141 8 113 1.86e-12 62.4

Find 63 sgRNAs with CRISPR-Local

Find 240 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCAAATGCTCTTGAGGGCT+TGG 0.201712 5_1:-2862888 None:intergenic
GTGTATGGAACTGTTATATT+TGG 0.267520 5_1:+2864011 Msa0710950:three_prime_UTR
GTGGCCTTTGCCTTCAATTA+AGG 0.272510 5_1:-2863942 None:intergenic
GCTCTTGAGGGCTTGGGTTC+GGG 0.285856 5_1:-2862881 None:intergenic
TGCTCTTGAGGGCTTGGGTT+CGG 0.309630 5_1:-2862882 None:intergenic
CCCAAGCCCTCAAGAGCATT+TGG 0.313567 5_1:+2862887 Msa0710950:CDS
GAGCATTTGGGCCCACATTA+AGG 0.313899 5_1:+2862900 Msa0710950:CDS
CTTGGAGTCCTGAGAGTTAG+AGG 0.343205 5_1:-2862673 None:intergenic
CCAAATGCTCTTGAGGGCTT+GGG 0.352861 5_1:-2862887 None:intergenic
GGCTTGGGTTCGGGAAATCT+CGG 0.358689 5_1:-2862872 None:intergenic
GTTGATATGCTTGAGATTGC+TGG 0.364505 5_1:+2863901 Msa0710950:CDS
GCCCTCACTTCCTTAATTGA+AGG 0.384410 5_1:+2863932 Msa0710950:CDS
CCGACGAGGTCTTGCATCTC+GGG 0.390790 5_1:-2862844 None:intergenic
ACAGTTGAGCGGGGTGAGTA+AGG 0.392563 5_1:+2862537 None:intergenic
ATCATATGAAGGCCACGTTT+TGG 0.393931 5_1:+2863989 Msa0710950:three_prime_UTR
AACTAAACCTTGAGACTTAG+TGG 0.395134 5_1:-2863961 None:intergenic
AAAGGCTACTACTATGTTGC+AGG 0.396055 5_1:-2864045 None:intergenic
TTCTTCTTCTTCTTTGCGGA+TGG 0.406045 5_1:+2862729 Msa0710950:CDS
GCCGACGAGGTCTTGCATCT+CGG 0.410466 5_1:-2862845 None:intergenic
TTGAGCGGGGTGAGTAAGGG+GGG 0.426532 5_1:+2862541 None:intergenic
AAACTGAAGAAGGTATTTGC+AGG 0.431242 5_1:+2863868 Msa0710950:CDS
CAGTTGAGCGGGGTGAGTAA+GGG 0.436720 5_1:+2862538 None:intergenic
CCAAGCCCTCAAGAGCATTT+GGG 0.438538 5_1:+2862888 Msa0710950:CDS
AGTTGAGCGGGGTGAGTAAG+GGG 0.448366 5_1:+2862539 None:intergenic
GTTGAGCGGGGTGAGTAAGG+GGG 0.461501 5_1:+2862540 None:intergenic
GCTTGGGTTCGGGAAATCTC+GGG 0.463473 5_1:-2862871 None:intergenic
CATCTCCTCCTCTAACTCTC+AGG 0.478833 5_1:+2862665 Msa0710950:CDS
TAGTACTTCAGGTACAGAAC+AGG 0.480293 5_1:+2864083 Msa0710950:three_prime_UTR
CATTAAGGAACACAATCTTC+AGG 0.486338 5_1:+2862915 Msa0710950:CDS
GTCTCTCAGCCTCCACCCAC+CGG 0.498374 5_1:+2862781 Msa0710950:CDS
GCCTTCAATTAAGGAAGTGA+GGG 0.502350 5_1:-2863933 None:intergenic
TCGCTCGCTGTGAGTGAAGA+TGG 0.503298 5_1:+2862612 Msa0710950:exon
GTGGGCCCAAATGCTCTTGA+GGG 0.503891 5_1:-2862893 None:intergenic
CTCTAACTCTCAGGACTCCA+AGG 0.525205 5_1:+2862674 Msa0710950:CDS
CTTCACTCACAGCGAGCGAA+TGG 0.526381 5_1:-2862608 None:intergenic
TGTGGGCCCAAATGCTCTTG+AGG 0.532300 5_1:-2862894 None:intergenic
GAAGATTGTGTTCCTTAATG+TGG 0.537334 5_1:-2862912 None:intergenic
AGTGAAGATGGCGGTTTCAA+TGG 0.537531 5_1:+2862624 Msa0710950:exon
TGGAGGCTGAGAGACGGTGG+CGG 0.544798 5_1:-2862773 None:intergenic
AGGAGATGATAATAATAGTC+CGG 0.546560 5_1:-2862650 None:intergenic
GGTGGGTGGAGGCTGAGAGA+CGG 0.548280 5_1:-2862779 None:intergenic
TGCCTTCAATTAAGGAAGTG+AGG 0.555494 5_1:-2863934 None:intergenic
TGAGCGGGGTGAGTAAGGGG+GGG 0.555964 5_1:+2862542 None:intergenic
AAGATTGTGTTCCTTAATGT+GGG 0.565657 5_1:-2862911 None:intergenic
CGGTGGCGGAAGTAACTGTT+CGG 0.576626 5_1:-2862759 None:intergenic
CTGTGATGAGAAACTGAAGA+AGG 0.578111 5_1:+2863858 Msa0710950:CDS
ATGGCGGTTTCAATGGCTAC+CGG 0.582248 5_1:+2862631 Msa0710950:CDS
GGTGTGGGAAACGCAAACCT+TGG 0.584167 5_1:-2862691 None:intergenic
AACTGAAGAAGGTATTTGCA+GGG 0.589332 5_1:+2863869 Msa0710950:CDS
CCCACCGGAGGCAAAATTCG+CGG 0.592965 5_1:+2862796 Msa0710950:CDS
ACTTCCTTAATTGAAGGCAA+AGG 0.598604 5_1:+2863938 Msa0710950:exon
GGGTGGAGGCTGAGAGACGG+TGG 0.602966 5_1:-2862776 None:intergenic
GCAAAGGCCACTAAGTCTCA+AGG 0.608526 5_1:+2863954 Msa0710950:three_prime_UTR
AAATCTCGGGTTGGCCGACG+AGG 0.609292 5_1:-2862858 None:intergenic
GGGTTCGGGAAATCTCGGGT+TGG 0.610231 5_1:-2862867 None:intergenic
TCTCAGCCTCCACCCACCGG+AGG 0.623094 5_1:+2862784 Msa0710950:CDS
CGACGAGGTCTTGCATCTCG+GGG 0.623606 5_1:-2862843 None:intergenic
CCCGAGATGCAAGACCTCGT+CGG 0.633591 5_1:+2862844 Msa0710950:CDS
GGAGTCCTGAGAGTTAGAGG+AGG 0.667796 5_1:-2862670 None:intergenic
GACGAGGTCTTGCATCTCGG+GGG 0.684378 5_1:-2862842 None:intergenic
GCGGAAGTAACTGTTCGGAG+TGG 0.691914 5_1:-2862754 None:intergenic
CTCGCTGTGAGTGAAGATGG+CGG 0.702571 5_1:+2862615 Msa0710950:exon
CAGTTCCATACACCAAAACG+TGG 0.702843 5_1:-2864001 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATAATAATAATAATTAAA+AGG - chr5_1:2864169-2864188 None:intergenic 0.0%
!! TAATTATTATTATTATTATT+AGG + chr5_1:2864171-2864190 Msa0710950:three_prime_UTR 0.0%
!! TAATAATAATAATAATTAAA+AGG - chr5_1:2864169-2864188 None:intergenic 0.0%
!! TAATTATTATTATTATTATT+AGG + chr5_1:2864171-2864190 Msa0710950:three_prime_UTR 0.0%
!!! ATTATTATTAGGTTTTTTAT+TGG + chr5_1:2864182-2864201 Msa0710950:three_prime_UTR 10.0%
!!! ATTATTATTAGGTTTTTTAT+TGG + chr5_1:2864182-2864201 Msa0710950:three_prime_UTR 10.0%
!!! TTTAGGTGAAATTTTAAAAA+AGG - chr5_1:2862981-2863000 None:intergenic 15.0%
!!! TCAAAAACAAATAATTTGTA+CGG - chr5_1:2863004-2863023 None:intergenic 15.0%
!!! TTTATTTTTAACCAACTAAA+TGG + chr5_1:2863278-2863297 Msa0710950:intron 15.0%
!!! TTATTTTTAACCAACTAAAT+GGG + chr5_1:2863279-2863298 Msa0710950:intron 15.0%
!!! TTAGTTTTTATATCATATGA+AGG + chr5_1:2863978-2863997 Msa0710950:three_prime_UTR 15.0%
!!! TTTAGGTGAAATTTTAAAAA+AGG - chr5_1:2862981-2863000 None:intergenic 15.0%
!!! TCAAAAACAAATAATTTGTA+CGG - chr5_1:2863004-2863023 None:intergenic 15.0%
!!! TTTATTTTTAACCAACTAAA+TGG + chr5_1:2863278-2863297 Msa0710950:intron 15.0%
!!! TTATTTTTAACCAACTAAAT+GGG + chr5_1:2863279-2863298 Msa0710950:intron 15.0%
!!! TTAGTTTTTATATCATATGA+AGG + chr5_1:2863978-2863997 Msa0710950:three_prime_UTR 15.0%
!! TAAGTTGTTAGTTATTAAGA+TGG + chr5_1:2863056-2863075 Msa0710950:intron 20.0%
!! CAAAATAAAACATGAACAAA+TGG - chr5_1:2863137-2863156 None:intergenic 20.0%
!! GTCTGAATGAATATATTATT+AGG + chr5_1:2863174-2863193 Msa0710950:intron 20.0%
!! TATATTATTAGGCACTAATT+TGG + chr5_1:2863185-2863204 Msa0710950:intron 20.0%
!! ATATTATTAGGCACTAATTT+GGG + chr5_1:2863186-2863205 Msa0710950:intron 20.0%
!! AAAAGAATGAAAACTAGATT+TGG - chr5_1:2863261-2863280 None:intergenic 20.0%
!!! TATGCAATTCTGTTTTATAA+TGG + chr5_1:2863482-2863501 Msa0710950:intron 20.0%
!! AACATGTAGTTAAGATTATA+TGG - chr5_1:2863542-2863561 None:intergenic 20.0%
!! CTAACAAAAACAAAAAACAA+AGG - chr5_1:2864066-2864085 None:intergenic 20.0%
!! TAAGTTGTTAGTTATTAAGA+TGG + chr5_1:2863056-2863075 Msa0710950:intron 20.0%
!! CAAAATAAAACATGAACAAA+TGG - chr5_1:2863137-2863156 None:intergenic 20.0%
!! GTCTGAATGAATATATTATT+AGG + chr5_1:2863174-2863193 Msa0710950:intron 20.0%
!! TATATTATTAGGCACTAATT+TGG + chr5_1:2863185-2863204 Msa0710950:intron 20.0%
!! ATATTATTAGGCACTAATTT+GGG + chr5_1:2863186-2863205 Msa0710950:intron 20.0%
!! AAAAGAATGAAAACTAGATT+TGG - chr5_1:2863261-2863280 None:intergenic 20.0%
!!! TATGCAATTCTGTTTTATAA+TGG + chr5_1:2863482-2863501 Msa0710950:intron 20.0%
!! AACATGTAGTTAAGATTATA+TGG - chr5_1:2863542-2863561 None:intergenic 20.0%
!! CTAACAAAAACAAAAAACAA+AGG - chr5_1:2864066-2864085 None:intergenic 20.0%
!! ACAAATAATTTGTACGGTTT+AGG - chr5_1:2862998-2863017 None:intergenic 25.0%
! TATATTCATTCAGACCAAAT+TGG - chr5_1:2863169-2863188 None:intergenic 25.0%
!!! CAAAAAGTTGATGTACAAAT+TGG - chr5_1:2863308-2863327 None:intergenic 25.0%
!! ATGGATTCTATTGTCAATTT+TGG + chr5_1:2863514-2863533 Msa0710950:intron 25.0%
! CATTCAATTTATGGATGATA+CGG - chr5_1:2863707-2863726 None:intergenic 25.0%
!!! TTTGTTTTTGTTAGTACTTC+AGG + chr5_1:2864072-2864091 Msa0710950:three_prime_UTR 25.0%
!! ACAAATAATTTGTACGGTTT+AGG - chr5_1:2862998-2863017 None:intergenic 25.0%
! TATATTCATTCAGACCAAAT+TGG - chr5_1:2863169-2863188 None:intergenic 25.0%
!!! CAAAAAGTTGATGTACAAAT+TGG - chr5_1:2863308-2863327 None:intergenic 25.0%
!! ATGGATTCTATTGTCAATTT+TGG + chr5_1:2863514-2863533 Msa0710950:intron 25.0%
! CATTCAATTTATGGATGATA+CGG - chr5_1:2863707-2863726 None:intergenic 25.0%
!!! TTTGTTTTTGTTAGTACTTC+AGG + chr5_1:2864072-2864091 Msa0710950:three_prime_UTR 25.0%
AGGAGATGATAATAATAGTC+CGG - chr5_1:2862653-2862672 None:intergenic 30.0%
AAGATTGTGTTCCTTAATGT+GGG - chr5_1:2862914-2862933 None:intergenic 30.0%
TAAACTGCATAGATTCAGAA+TGG + chr5_1:2863033-2863052 Msa0710950:intron 30.0%
!! TTTTGACTCAACAACCAATT+TGG + chr5_1:2863152-2863171 Msa0710950:intron 30.0%
TTGGGAATAATCGGTTATTA+TGG + chr5_1:2863204-2863223 Msa0710950:intron 30.0%
TGGGAATAATCGGTTATTAT+GGG + chr5_1:2863205-2863224 Msa0710950:intron 30.0%
AAATTGGATTCCCATTTAGT+TGG - chr5_1:2863292-2863311 None:intergenic 30.0%
AAATTTGTGCAATTGAAACG+CGG - chr5_1:2863447-2863466 None:intergenic 30.0%
! TTTATAATGGTTGATGCTGA+TGG + chr5_1:2863495-2863514 Msa0710950:intron 30.0%
TCCATAAATTGAATGTTCTC+TGG + chr5_1:2863712-2863731 Msa0710950:intron 30.0%
CCATAAATTGAATGTTCTCT+GGG + chr5_1:2863713-2863732 Msa0710950:intron 30.0%
GTGTATGGAACTGTTATATT+TGG + chr5_1:2864011-2864030 Msa0710950:three_prime_UTR 30.0%
AGGAGATGATAATAATAGTC+CGG - chr5_1:2862653-2862672 None:intergenic 30.0%
AAGATTGTGTTCCTTAATGT+GGG - chr5_1:2862914-2862933 None:intergenic 30.0%
TAAACTGCATAGATTCAGAA+TGG + chr5_1:2863033-2863052 Msa0710950:intron 30.0%
!! TTTTGACTCAACAACCAATT+TGG + chr5_1:2863152-2863171 Msa0710950:intron 30.0%
TTGGGAATAATCGGTTATTA+TGG + chr5_1:2863204-2863223 Msa0710950:intron 30.0%
TGGGAATAATCGGTTATTAT+GGG + chr5_1:2863205-2863224 Msa0710950:intron 30.0%
AAATTGGATTCCCATTTAGT+TGG - chr5_1:2863292-2863311 None:intergenic 30.0%
AAATTTGTGCAATTGAAACG+CGG - chr5_1:2863447-2863466 None:intergenic 30.0%
! TTTATAATGGTTGATGCTGA+TGG + chr5_1:2863495-2863514 Msa0710950:intron 30.0%
TCCATAAATTGAATGTTCTC+TGG + chr5_1:2863712-2863731 Msa0710950:intron 30.0%
CCATAAATTGAATGTTCTCT+GGG + chr5_1:2863713-2863732 Msa0710950:intron 30.0%
GTGTATGGAACTGTTATATT+TGG + chr5_1:2864011-2864030 Msa0710950:three_prime_UTR 30.0%
GAAGAAGAAGAAGAAGAAGA+AGG - chr5_1:2862715-2862734 None:intergenic 35.0%
CTTCTTCTTCTTCTTCTTTG+CGG + chr5_1:2862725-2862744 Msa0710950:CDS 35.0%
GAAGATTGTGTTCCTTAATG+TGG - chr5_1:2862915-2862934 None:intergenic 35.0%
CATTAAGGAACACAATCTTC+AGG + chr5_1:2862915-2862934 Msa0710950:CDS 35.0%
TATCCTCAAGAGAAAGAGAA+AGG - chr5_1:2862953-2862972 None:intergenic 35.0%
GGCACTAATTTGGGAATAAT+CGG + chr5_1:2863195-2863214 Msa0710950:intron 35.0%
GGGAATAATCGGTTATTATG+GGG + chr5_1:2863206-2863225 Msa0710950:intron 35.0%
GGAATAATCGGTTATTATGG+GGG + chr5_1:2863207-2863226 Msa0710950:intron 35.0%
TTATGGGGGCTAAATTCAAT+TGG + chr5_1:2863221-2863240 Msa0710950:intron 35.0%
TATGGGGGCTAAATTCAATT+GGG + chr5_1:2863222-2863241 Msa0710950:intron 35.0%
ATGTAGAACAAGTGCAAACA+AGG - chr5_1:2863359-2863378 None:intergenic 35.0%
CCCAGAGAACATTCAATTTA+TGG - chr5_1:2863716-2863735 None:intergenic 35.0%
TTATGAATGCAGGATAGCAT+TGG - chr5_1:2863755-2863774 None:intergenic 35.0%
CTGAACGTATTTATGAATGC+AGG - chr5_1:2863765-2863784 None:intergenic 35.0%
! GAATAAGCCTCTTTTTCTCA+GGG - chr5_1:2863837-2863856 None:intergenic 35.0%
!! AAACTGAAGAAGGTATTTGC+AGG + chr5_1:2863868-2863887 Msa0710950:CDS 35.0%
!! AACTGAAGAAGGTATTTGCA+GGG + chr5_1:2863869-2863888 Msa0710950:CDS 35.0%
ACTTCCTTAATTGAAGGCAA+AGG + chr5_1:2863938-2863957 Msa0710950:exon 35.0%
AACTAAACCTTGAGACTTAG+TGG - chr5_1:2863964-2863983 None:intergenic 35.0%
GAAGAAGAAGAAGAAGAAGA+AGG - chr5_1:2862715-2862734 None:intergenic 35.0%
CTTCTTCTTCTTCTTCTTTG+CGG + chr5_1:2862725-2862744 Msa0710950:CDS 35.0%
GAAGATTGTGTTCCTTAATG+TGG - chr5_1:2862915-2862934 None:intergenic 35.0%
CATTAAGGAACACAATCTTC+AGG + chr5_1:2862915-2862934 Msa0710950:CDS 35.0%
TATCCTCAAGAGAAAGAGAA+AGG - chr5_1:2862953-2862972 None:intergenic 35.0%
GGCACTAATTTGGGAATAAT+CGG + chr5_1:2863195-2863214 Msa0710950:intron 35.0%
GGGAATAATCGGTTATTATG+GGG + chr5_1:2863206-2863225 Msa0710950:intron 35.0%
GGAATAATCGGTTATTATGG+GGG + chr5_1:2863207-2863226 Msa0710950:intron 35.0%
TTATGGGGGCTAAATTCAAT+TGG + chr5_1:2863221-2863240 Msa0710950:intron 35.0%
TATGGGGGCTAAATTCAATT+GGG + chr5_1:2863222-2863241 Msa0710950:intron 35.0%
ATGTAGAACAAGTGCAAACA+AGG - chr5_1:2863359-2863378 None:intergenic 35.0%
CCCAGAGAACATTCAATTTA+TGG - chr5_1:2863716-2863735 None:intergenic 35.0%
TTATGAATGCAGGATAGCAT+TGG - chr5_1:2863755-2863774 None:intergenic 35.0%
CTGAACGTATTTATGAATGC+AGG - chr5_1:2863765-2863784 None:intergenic 35.0%
! GAATAAGCCTCTTTTTCTCA+GGG - chr5_1:2863837-2863856 None:intergenic 35.0%
!! AAACTGAAGAAGGTATTTGC+AGG + chr5_1:2863868-2863887 Msa0710950:CDS 35.0%
!! AACTGAAGAAGGTATTTGCA+GGG + chr5_1:2863869-2863888 Msa0710950:CDS 35.0%
ACTTCCTTAATTGAAGGCAA+AGG + chr5_1:2863938-2863957 Msa0710950:exon 35.0%
AACTAAACCTTGAGACTTAG+TGG - chr5_1:2863964-2863983 None:intergenic 35.0%
! GAAGAAGAAGAAGAAGGTGT+GGG - chr5_1:2862709-2862728 None:intergenic 40.0%
AGAAGAAGAAGAAGAAGGTG+TGG - chr5_1:2862710-2862729 None:intergenic 40.0%
TTCTTCTTCTTCTTTGCGGA+TGG + chr5_1:2862729-2862748 Msa0710950:CDS 40.0%
!!! ATCTCGGGGGAGATTTTTTT+AGG - chr5_1:2862832-2862851 None:intergenic 40.0%
TCTCCTTTCTCTTTCTCTTG+AGG + chr5_1:2862947-2862966 Msa0710950:intron 40.0%
GTCTGTACAAGAGTAGTTGT+AGG - chr5_1:2863658-2863677 None:intergenic 40.0%
! GCAGGATAGCATTGGATTAA+TGG - chr5_1:2863747-2863766 None:intergenic 40.0%
TACGTTCAGCAACGTTTGAT+TGG + chr5_1:2863776-2863795 Msa0710950:intron 40.0%
TTCAGAACCCTGAGAAAAAG+AGG + chr5_1:2863827-2863846 Msa0710950:intron 40.0%
! CGAATAAGCCTCTTTTTCTC+AGG - chr5_1:2863838-2863857 None:intergenic 40.0%
CTGTGATGAGAAACTGAAGA+AGG + chr5_1:2863858-2863877 Msa0710950:CDS 40.0%
GTTGATATGCTTGAGATTGC+TGG + chr5_1:2863901-2863920 Msa0710950:CDS 40.0%
GCCTTCAATTAAGGAAGTGA+GGG - chr5_1:2863936-2863955 None:intergenic 40.0%
TGCCTTCAATTAAGGAAGTG+AGG - chr5_1:2863937-2863956 None:intergenic 40.0%
! ATCATATGAAGGCCACGTTT+TGG + chr5_1:2863989-2864008 Msa0710950:three_prime_UTR 40.0%
AAAGGCTACTACTATGTTGC+AGG - chr5_1:2864048-2864067 None:intergenic 40.0%
TAGTACTTCAGGTACAGAAC+AGG + chr5_1:2864083-2864102 Msa0710950:three_prime_UTR 40.0%
! GAAGAAGAAGAAGAAGGTGT+GGG - chr5_1:2862709-2862728 None:intergenic 40.0%
AGAAGAAGAAGAAGAAGGTG+TGG - chr5_1:2862710-2862729 None:intergenic 40.0%
TTCTTCTTCTTCTTTGCGGA+TGG + chr5_1:2862729-2862748 Msa0710950:CDS 40.0%
!!! ATCTCGGGGGAGATTTTTTT+AGG - chr5_1:2862832-2862851 None:intergenic 40.0%
TCTCCTTTCTCTTTCTCTTG+AGG + chr5_1:2862947-2862966 Msa0710950:intron 40.0%
GTCTGTACAAGAGTAGTTGT+AGG - chr5_1:2863658-2863677 None:intergenic 40.0%
! GCAGGATAGCATTGGATTAA+TGG - chr5_1:2863747-2863766 None:intergenic 40.0%
TACGTTCAGCAACGTTTGAT+TGG + chr5_1:2863776-2863795 Msa0710950:intron 40.0%
TTCAGAACCCTGAGAAAAAG+AGG + chr5_1:2863827-2863846 Msa0710950:intron 40.0%
! CGAATAAGCCTCTTTTTCTC+AGG - chr5_1:2863838-2863857 None:intergenic 40.0%
CTGTGATGAGAAACTGAAGA+AGG + chr5_1:2863858-2863877 Msa0710950:CDS 40.0%
GTTGATATGCTTGAGATTGC+TGG + chr5_1:2863901-2863920 Msa0710950:CDS 40.0%
GCCTTCAATTAAGGAAGTGA+GGG - chr5_1:2863936-2863955 None:intergenic 40.0%
TGCCTTCAATTAAGGAAGTG+AGG - chr5_1:2863937-2863956 None:intergenic 40.0%
! ATCATATGAAGGCCACGTTT+TGG + chr5_1:2863989-2864008 Msa0710950:three_prime_UTR 40.0%
AAAGGCTACTACTATGTTGC+AGG - chr5_1:2864048-2864067 None:intergenic 40.0%
TAGTACTTCAGGTACAGAAC+AGG + chr5_1:2864083-2864102 Msa0710950:three_prime_UTR 40.0%
! AGTGAAGATGGCGGTTTCAA+TGG + chr5_1:2862624-2862643 Msa0710950:exon 45.0%
! AATACCGCGAATTTTGCCTC+CGG - chr5_1:2862803-2862822 None:intergenic 45.0%
GCCCTCACTTCCTTAATTGA+AGG + chr5_1:2863932-2863951 Msa0710950:CDS 45.0%
GTGGCCTTTGCCTTCAATTA+AGG - chr5_1:2863945-2863964 None:intergenic 45.0%
CAGTTCCATACACCAAAACG+TGG - chr5_1:2864004-2864023 None:intergenic 45.0%
! AGTGAAGATGGCGGTTTCAA+TGG + chr5_1:2862624-2862643 Msa0710950:exon 45.0%
! AATACCGCGAATTTTGCCTC+CGG - chr5_1:2862803-2862822 None:intergenic 45.0%
GCCCTCACTTCCTTAATTGA+AGG + chr5_1:2863932-2863951 Msa0710950:CDS 45.0%
GTGGCCTTTGCCTTCAATTA+AGG - chr5_1:2863945-2863964 None:intergenic 45.0%
CAGTTCCATACACCAAAACG+TGG - chr5_1:2864004-2864023 None:intergenic 45.0%
ATGGCGGTTTCAATGGCTAC+CGG + chr5_1:2862631-2862650 Msa0710950:CDS 50.0%
CATCTCCTCCTCTAACTCTC+AGG + chr5_1:2862665-2862684 Msa0710950:CDS 50.0%
CTTGGAGTCCTGAGAGTTAG+AGG - chr5_1:2862676-2862695 None:intergenic 50.0%
CTCTAACTCTCAGGACTCCA+AGG + chr5_1:2862674-2862693 Msa0710950:CDS 50.0%
CCAAATGCTCTTGAGGGCTT+GGG - chr5_1:2862890-2862909 None:intergenic 50.0%
!! CCAAGCCCTCAAGAGCATTT+GGG + chr5_1:2862888-2862907 Msa0710950:CDS 50.0%
GAGCATTTGGGCCCACATTA+AGG + chr5_1:2862900-2862919 Msa0710950:CDS 50.0%
AACCTGTCTGTCTGTCTGTC+TGG + chr5_1:2863397-2863416 Msa0710950:intron 50.0%
GCAAAGGCCACTAAGTCTCA+AGG + chr5_1:2863954-2863973 Msa0710950:three_prime_UTR 50.0%
!! GAAGGCCACGTTTTGGTGTA+TGG + chr5_1:2863996-2864015 Msa0710950:three_prime_UTR 50.0%
ATGGCGGTTTCAATGGCTAC+CGG + chr5_1:2862631-2862650 Msa0710950:CDS 50.0%
CATCTCCTCCTCTAACTCTC+AGG + chr5_1:2862665-2862684 Msa0710950:CDS 50.0%
CTTGGAGTCCTGAGAGTTAG+AGG - chr5_1:2862676-2862695 None:intergenic 50.0%
CTCTAACTCTCAGGACTCCA+AGG + chr5_1:2862674-2862693 Msa0710950:CDS 50.0%
CCAAATGCTCTTGAGGGCTT+GGG - chr5_1:2862890-2862909 None:intergenic 50.0%
!! CCAAGCCCTCAAGAGCATTT+GGG + chr5_1:2862888-2862907 Msa0710950:CDS 50.0%
GAGCATTTGGGCCCACATTA+AGG + chr5_1:2862900-2862919 Msa0710950:CDS 50.0%
AACCTGTCTGTCTGTCTGTC+TGG + chr5_1:2863397-2863416 Msa0710950:intron 50.0%
GCAAAGGCCACTAAGTCTCA+AGG + chr5_1:2863954-2863973 Msa0710950:three_prime_UTR 50.0%
!! GAAGGCCACGTTTTGGTGTA+TGG + chr5_1:2863996-2864015 Msa0710950:three_prime_UTR 50.0%
GAGTAAGGGGGGGATAGTGT+TGG + chr5_1:2862552-2862571 Msa0710950:five_prime_UTR 55.0%
CTTCACTCACAGCGAGCGAA+TGG - chr5_1:2862611-2862630 None:intergenic 55.0%
TCGCTCGCTGTGAGTGAAGA+TGG + chr5_1:2862612-2862631 Msa0710950:exon 55.0%
CTCGCTGTGAGTGAAGATGG+CGG + chr5_1:2862615-2862634 Msa0710950:exon 55.0%
GGAGTCCTGAGAGTTAGAGG+AGG - chr5_1:2862673-2862692 None:intergenic 55.0%
GGTGTGGGAAACGCAAACCT+TGG - chr5_1:2862694-2862713 None:intergenic 55.0%
GCGGAAGTAACTGTTCGGAG+TGG - chr5_1:2862757-2862776 None:intergenic 55.0%
!! CGGTGGCGGAAGTAACTGTT+CGG - chr5_1:2862762-2862781 None:intergenic 55.0%
GCTTGGGTTCGGGAAATCTC+GGG - chr5_1:2862874-2862893 None:intergenic 55.0%
GGCTTGGGTTCGGGAAATCT+CGG - chr5_1:2862875-2862894 None:intergenic 55.0%
TGCTCTTGAGGGCTTGGGTT+CGG - chr5_1:2862885-2862904 None:intergenic 55.0%
!! CCCAAGCCCTCAAGAGCATT+TGG + chr5_1:2862887-2862906 Msa0710950:CDS 55.0%
CCCAAATGCTCTTGAGGGCT+TGG - chr5_1:2862891-2862910 None:intergenic 55.0%
GTGGGCCCAAATGCTCTTGA+GGG - chr5_1:2862896-2862915 None:intergenic 55.0%
TGTGGGCCCAAATGCTCTTG+AGG - chr5_1:2862897-2862916 None:intergenic 55.0%
TGCCAGACAGACAGACAGAC+AGG - chr5_1:2863402-2863421 None:intergenic 55.0%
GAGTAAGGGGGGGATAGTGT+TGG + chr5_1:2862552-2862571 Msa0710950:five_prime_UTR 55.0%
CTTCACTCACAGCGAGCGAA+TGG - chr5_1:2862611-2862630 None:intergenic 55.0%
TCGCTCGCTGTGAGTGAAGA+TGG + chr5_1:2862612-2862631 Msa0710950:exon 55.0%
CTCGCTGTGAGTGAAGATGG+CGG + chr5_1:2862615-2862634 Msa0710950:exon 55.0%
GGAGTCCTGAGAGTTAGAGG+AGG - chr5_1:2862673-2862692 None:intergenic 55.0%
GGTGTGGGAAACGCAAACCT+TGG - chr5_1:2862694-2862713 None:intergenic 55.0%
GCGGAAGTAACTGTTCGGAG+TGG - chr5_1:2862757-2862776 None:intergenic 55.0%
!! CGGTGGCGGAAGTAACTGTT+CGG - chr5_1:2862762-2862781 None:intergenic 55.0%
GCTTGGGTTCGGGAAATCTC+GGG - chr5_1:2862874-2862893 None:intergenic 55.0%
GGCTTGGGTTCGGGAAATCT+CGG - chr5_1:2862875-2862894 None:intergenic 55.0%
TGCTCTTGAGGGCTTGGGTT+CGG - chr5_1:2862885-2862904 None:intergenic 55.0%
!! CCCAAGCCCTCAAGAGCATT+TGG + chr5_1:2862887-2862906 Msa0710950:CDS 55.0%
CCCAAATGCTCTTGAGGGCT+TGG - chr5_1:2862891-2862910 None:intergenic 55.0%
GTGGGCCCAAATGCTCTTGA+GGG - chr5_1:2862896-2862915 None:intergenic 55.0%
TGTGGGCCCAAATGCTCTTG+AGG - chr5_1:2862897-2862916 None:intergenic 55.0%
TGCCAGACAGACAGACAGAC+AGG - chr5_1:2863402-2863421 None:intergenic 55.0%
! ATTTTGCCTCCGGTGGGTGG+AGG - chr5_1:2862793-2862812 None:intergenic 60.0%
! CGAATTTTGCCTCCGGTGGG+TGG - chr5_1:2862796-2862815 None:intergenic 60.0%
! CCGCGAATTTTGCCTCCGGT+GGG - chr5_1:2862799-2862818 None:intergenic 60.0%
CCCACCGGAGGCAAAATTCG+CGG + chr5_1:2862796-2862815 Msa0710950:CDS 60.0%
! ACCGCGAATTTTGCCTCCGG+TGG - chr5_1:2862800-2862819 None:intergenic 60.0%
GACGAGGTCTTGCATCTCGG+GGG - chr5_1:2862845-2862864 None:intergenic 60.0%
CGACGAGGTCTTGCATCTCG+GGG - chr5_1:2862846-2862865 None:intergenic 60.0%
CCGACGAGGTCTTGCATCTC+GGG - chr5_1:2862847-2862866 None:intergenic 60.0%
CCCGAGATGCAAGACCTCGT+CGG + chr5_1:2862844-2862863 Msa0710950:CDS 60.0%
GCCGACGAGGTCTTGCATCT+CGG - chr5_1:2862848-2862867 None:intergenic 60.0%
!! AAATCTCGGGTTGGCCGACG+AGG - chr5_1:2862861-2862880 None:intergenic 60.0%
GGGTTCGGGAAATCTCGGGT+TGG - chr5_1:2862870-2862889 None:intergenic 60.0%
GCTCTTGAGGGCTTGGGTTC+GGG - chr5_1:2862884-2862903 None:intergenic 60.0%
! ATTTTGCCTCCGGTGGGTGG+AGG - chr5_1:2862793-2862812 None:intergenic 60.0%
! CGAATTTTGCCTCCGGTGGG+TGG - chr5_1:2862796-2862815 None:intergenic 60.0%
! CCGCGAATTTTGCCTCCGGT+GGG - chr5_1:2862799-2862818 None:intergenic 60.0%
CCCACCGGAGGCAAAATTCG+CGG + chr5_1:2862796-2862815 Msa0710950:CDS 60.0%
! ACCGCGAATTTTGCCTCCGG+TGG - chr5_1:2862800-2862819 None:intergenic 60.0%
GACGAGGTCTTGCATCTCGG+GGG - chr5_1:2862845-2862864 None:intergenic 60.0%
CGACGAGGTCTTGCATCTCG+GGG - chr5_1:2862846-2862865 None:intergenic 60.0%
CCGACGAGGTCTTGCATCTC+GGG - chr5_1:2862847-2862866 None:intergenic 60.0%
CCCGAGATGCAAGACCTCGT+CGG + chr5_1:2862844-2862863 Msa0710950:CDS 60.0%
GCCGACGAGGTCTTGCATCT+CGG - chr5_1:2862848-2862867 None:intergenic 60.0%
!! AAATCTCGGGTTGGCCGACG+AGG - chr5_1:2862861-2862880 None:intergenic 60.0%
GGGTTCGGGAAATCTCGGGT+TGG - chr5_1:2862870-2862889 None:intergenic 60.0%
GCTCTTGAGGGCTTGGGTTC+GGG - chr5_1:2862884-2862903 None:intergenic 60.0%
TGGAGGCTGAGAGACGGTGG+CGG - chr5_1:2862776-2862795 None:intergenic 65.0%
GGTGGGTGGAGGCTGAGAGA+CGG - chr5_1:2862782-2862801 None:intergenic 65.0%
GTCTCTCAGCCTCCACCCAC+CGG + chr5_1:2862781-2862800 Msa0710950:CDS 65.0%
TGGAGGCTGAGAGACGGTGG+CGG - chr5_1:2862776-2862795 None:intergenic 65.0%
GGTGGGTGGAGGCTGAGAGA+CGG - chr5_1:2862782-2862801 None:intergenic 65.0%
GTCTCTCAGCCTCCACCCAC+CGG + chr5_1:2862781-2862800 Msa0710950:CDS 65.0%
GGGTGGAGGCTGAGAGACGG+TGG - chr5_1:2862779-2862798 None:intergenic 70.0%
TCTCAGCCTCCACCCACCGG+AGG + chr5_1:2862784-2862803 Msa0710950:CDS 70.0%
GGGTGGAGGCTGAGAGACGG+TGG - chr5_1:2862779-2862798 None:intergenic 70.0%
TCTCAGCCTCCACCCACCGG+AGG + chr5_1:2862784-2862803 Msa0710950:CDS 70.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 2862545 2864256 2862545 ID=Msa0710950;Name=Msa0710950
chr5_1 mRNA 2862545 2864256 2862545 ID=Msa0710950-mRNA-1;Parent=Msa0710950;Name=Msa0710950-mRNA-1;_AED=0.00;_eAED=0.00;_QI=86|1|1|1|1|1|2|305|141
chr5_1 exon 2862545 2862936 2862545 ID=Msa0710950-mRNA-1:exon:909;Parent=Msa0710950-mRNA-1
chr5_1 exon 2863832 2864256 2863832 ID=Msa0710950-mRNA-1:exon:910;Parent=Msa0710950-mRNA-1
chr5_1 five_prime_UTR 2862545 2862630 2862545 ID=Msa0710950-mRNA-1:five_prime_utr;Parent=Msa0710950-mRNA-1
chr5_1 CDS 2862631 2862936 2862631 ID=Msa0710950-mRNA-1:cds;Parent=Msa0710950-mRNA-1
chr5_1 CDS 2863832 2863951 2863832 ID=Msa0710950-mRNA-1:cds;Parent=Msa0710950-mRNA-1
chr5_1 three_prime_UTR 2863952 2864256 2863952 ID=Msa0710950-mRNA-1:three_prime_utr;Parent=Msa0710950-mRNA-1
Gene Sequence

>Msa0710950

ATGGCGGTTTCAATGGCTACCGGACTATTATTATCATCTCCTCCTCTAACTCTCAGGACTCCAAGGTTTGCGTTTCCCACACCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTGCGGATGGCTCCACTCCGAACAGTTACTTCCGCCACCGTCTCTCAGCCTCCACCCACCGGAGGCAAAATTCGCGGTATTATGAAACCTAAAAAAATCTCCCCCGAGATGCAAGACCTCGTCGGCCAACCCGAGATTTCCCGAACCCAAGCCCTCAAGAGCATTTGGGCCCACATTAAGGAACACAATCTTCAGAACCCTGAGAAAAAGAGGCTTATTCGCTGTGATGAGAAACTGAAGAAGGTATTTGCAGGGAGAGATGAAGTTGATATGCTTGAGATTGCTGGCTTGATTAGCCCTCACTTCCTTAATTGA

Protein sequence

>Msa0710950

MAVSMATGLLLSSPPLTLRTPRFAFPTPSSSSSSSSSLRMAPLRTVTSATVSQPPPTGGKIRGIMKPKKISPEMQDLVGQPEISRTQALKSIWAHIKEHNLQNPEKKRLIRCDEKLKKVFAGRDEVDMLEIAGLISPHFLN*