AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0807850


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0807850 MtrunA17_Chr5g0422401 87.783 442 10 2 1 401 2 440 0.0 764
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0807850 AT1G26090.1 55.069 434 148 4 10 401 27 455 3.49e-163 466

Find 98 sgRNAs with CRISPR-Local

Find 395 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTGGAATGATTCTGGTTT+TGG 0.153249 5_3:+31102120 None:intergenic
AAGACTTCTGTCTTGGAATT+TGG 0.162457 5_3:+31099917 None:intergenic
CAGGCTGGTGCTCAAGTTTC+AGG 0.171579 5_3:-31102168 Msa0807850:CDS
CAATTCTGCATTACGTTATT+GGG 0.192768 5_3:-31102202 Msa0807850:CDS
TTTGCTCTTTGGAATGATTC+TGG 0.193571 5_3:+31102114 None:intergenic
TTCTCAAATCCACAGAAATT+TGG 0.216274 5_3:-31102264 Msa0807850:intron
TCAATTCTGCATTACGTTAT+TGG 0.222888 5_3:-31102203 Msa0807850:CDS
GCTCAAGTTTCAGGCGCTTT+TGG 0.247175 5_3:-31102159 Msa0807850:CDS
AACTGATGATGTCATATTAC+TGG 0.259593 5_3:+31101957 None:intergenic
TTGACAGAGGTTGGATTGTT+AGG 0.266572 5_3:+31102222 None:intergenic
TTAATAATCCTCAGCATAAA+AGG 0.270398 5_3:+31099852 None:intergenic
GAGGAGCTTGGCATCCTTCC+TGG 0.301290 5_3:-31102867 Msa0807850:CDS
TGTTCGAACAAAACCCCTTT+TGG 0.329376 5_3:-31103666 Msa0807850:CDS
CTTGCACTTGAGAGGCTTGT+AGG 0.332180 5_3:-31102822 Msa0807850:CDS
GCAAGAACCTTTCGGCTGTT+AGG 0.346228 5_3:-31103239 Msa0807850:CDS
TTGGCTGAGAAAACTGAAAT+TGG 0.346531 5_3:-31102581 Msa0807850:CDS
CTGCAAATTTGTGCATGAAT+TGG 0.354808 5_3:-31099803 Msa0807850:three_prime_UTR
AATTTCGAGCTTCACATTTC+CGG 0.370043 5_3:-31103708 Msa0807850:CDS
TAGGGGAGGATCTGAGCTTT+TGG 0.374945 5_3:-31100006 Msa0807850:CDS
GAGGCGTTTAAGATTAGCTT+TGG 0.376524 5_3:-31103744 Msa0807850:five_prime_UTR
GAAAAGATTGAGTCCATTCC+AGG 0.377962 5_3:+31102849 None:intergenic
AAAACTTTGTTCCAATCGAT+TGG 0.389728 5_3:+31102036 None:intergenic
TATCTACTCAATTGTAAGAT+TGG 0.409599 5_3:-31103282 Msa0807850:CDS
CGCCGCTATCTTCGCCGCTC+AGG 0.428635 5_3:-31103543 Msa0807850:intron
AAGATTAGCTTTGGATTGGA+TGG 0.430982 5_3:-31103735 Msa0807850:exon
TTTCTCGGCAAAGGTGGCTC+TGG 0.432097 5_3:-31103575 Msa0807850:CDS
CCTTGAATTTCTTGAGGCAA+AGG 0.436195 5_3:+31099954 None:intergenic
AAACTTTGTTCCAATCGATT+GGG 0.439766 5_3:+31102037 None:intergenic
GAAAACTGAAATTGGTAGAT+TGG 0.441363 5_3:-31102573 Msa0807850:CDS
CTTGAATTTCTTGAGGCAAA+GGG 0.442218 5_3:+31099955 None:intergenic
CGAGGAAACCTTGAGAATCA+TGG 0.447952 5_3:-31102727 Msa0807850:CDS
TAATTACAAGACTTCTGTCT+TGG 0.456853 5_3:+31099910 None:intergenic
TGCCTTGAGTCATATTAAGC+TGG 0.456940 5_3:+31103057 None:intergenic
TTGCACTTGAGAGGCTTGTA+GGG 0.463616 5_3:-31102821 Msa0807850:CDS
AGAAGAAGACACTGCCAAAA+GGG 0.468798 5_3:+31103652 None:intergenic
TCAGTTACTCTCTTCATGCC+AGG 0.474744 5_3:-31101913 Msa0807850:CDS
AATGCAGAATTGACAGAGGT+TGG 0.475547 5_3:+31102213 None:intergenic
TGGCTTCATCCACAAGTCTC+AGG 0.482093 5_3:+31102537 None:intergenic
GAAGTTGAACGACAAAGAAC+CGG 0.483634 5_3:+31103689 None:intergenic
GCCTCAAGAAATTCAAGGAA+AGG 0.484187 5_3:-31099949 Msa0807850:CDS
CCTTTGCCTCAAGAAATTCA+AGG 0.489134 5_3:-31099954 Msa0807850:CDS
GATGACACGCCTTTGATCTC+CGG 0.493928 5_3:+31099977 None:intergenic
GAACCTTTCGGCTGTTAGGT+TGG 0.494053 5_3:-31103235 Msa0807850:CDS
AAGAAGAAGACACTGCCAAA+AGG 0.495604 5_3:+31103651 None:intergenic
GATAGTCAGCAGTGATGTCT+TGG 0.496239 5_3:+31103301 None:intergenic
ATCTCTGATTTGTCAAAACC+TGG 0.497549 5_3:+31101895 None:intergenic
GTTTAAGATTAGCTTTGGAT+TGG 0.499217 5_3:-31103739 Msa0807850:five_prime_UTR
CGAATGCAGCAAGAACCTTT+CGG 0.501665 5_3:-31103247 Msa0807850:CDS
CATATAATAGATTGTGGGAG+AGG 0.504284 5_3:-31102886 Msa0807850:intron
AGCGGCGAAGATAGCGGCGG+TGG 0.504443 5_3:+31103547 None:intergenic
CTCAGCATAAAAGGAGAGAA+AGG 0.506701 5_3:+31099861 None:intergenic
GCTTGGCATCCTTCCTGGAA+TGG 0.510438 5_3:-31102862 Msa0807850:CDS
ATGATGTCATATTACTGGAT+TGG 0.518193 5_3:+31101962 None:intergenic
TGAGATGAAAGCAGAAGGCA+AGG 0.520256 5_3:+31102077 None:intergenic
AGATTAGCTTTGGATTGGAT+GGG 0.521247 5_3:-31103734 Msa0807850:exon
TGTGCCATATAATAGATTGT+GGG 0.522182 5_3:-31102891 Msa0807850:intron
ATGACTCAAGGCACACTTGG+AGG 0.523642 5_3:-31103047 Msa0807850:CDS
AATTCTGCATTACGTTATTG+GGG 0.532431 5_3:-31102201 Msa0807850:CDS
ACCTTTCCTTGAATTTCTTG+AGG 0.534279 5_3:+31099948 None:intergenic
CAAGAAATTCAAGGAAAGGT+TGG 0.534618 5_3:-31099945 Msa0807850:CDS
TAGATTGTGGGAGAGGAGCT+TGG 0.544408 5_3:-31102879 Msa0807850:CDS
TTTCGGTACTTGCACTTGAG+AGG 0.545250 5_3:-31102830 Msa0807850:CDS
TGGTAGAAGCCGGAGATCAA+AGG 0.547294 5_3:-31099986 Msa0807850:CDS
ATTTGGTTGCCTCCTTGTGA+TGG 0.549573 5_3:-31102247 Msa0807850:CDS
TTTAGTTGAAGCAACATCCT+CGG 0.550886 5_3:+31103607 None:intergenic
TAGTAAATAGCCCAATCGAT+TGG 0.561225 5_3:-31102047 Msa0807850:CDS
TGACTCAAGGCACACTTGGA+GGG 0.565824 5_3:-31103046 Msa0807850:CDS
GAGGAAACCTTGAGAATCAT+GGG 0.567213 5_3:-31102726 Msa0807850:CDS
TCGATTGGGCTATTTACTAA+CGG 0.567960 5_3:+31102051 None:intergenic
GCCTTGAGTCATATTAAGCT+GGG 0.571410 5_3:+31103058 None:intergenic
GAAATTCAAGGAAAGGTTGG+CGG 0.573892 5_3:-31099942 Msa0807850:CDS
TCCACAAGTCTCAGGAGTGA+AGG 0.574370 5_3:+31102545 None:intergenic
GCTTCCACCCATGATTCTCA+AGG 0.576164 5_3:+31102719 None:intergenic
GACTCAAGGCACACTTGGAG+GGG 0.579696 5_3:-31103045 Msa0807850:intron
TTAAAATAAATGCAGTATAG+GGG 0.586303 5_3:-31100023 Msa0807850:intron
AATATGACTCAAGGCACACT+TGG 0.591609 5_3:-31103050 Msa0807850:CDS
TTTAAAATATATCCGCACAT+TGG 0.592995 5_3:-31102600 Msa0807850:CDS
GATTATTAATGTTACAGCAG+TGG 0.604935 5_3:-31099838 Msa0807850:three_prime_UTR
GCCCAGCTTAATATGACTCA+AGG 0.605769 5_3:-31103059 Msa0807850:CDS
ACACTGTGAATAAAGATGCT+AGG 0.613197 5_3:-31102008 Msa0807850:CDS
ATTCTGCATTACGTTATTGG+GGG 0.613562 5_3:-31102200 Msa0807850:CDS
GAAGAAGACACTGCCAAAAG+GGG 0.622389 5_3:+31103653 None:intergenic
TTTCCAACCTAACAGCCGAA+AGG 0.627006 5_3:+31103232 None:intergenic
AAATAAATGCAGTATAGGGG+AGG 0.629069 5_3:-31100020 Msa0807850:intron
GGACTTGAGATGAAAGCAGA+AGG 0.643751 5_3:+31102072 None:intergenic
GAGATGAAAGCAGAAGGCAA+GGG 0.655584 5_3:+31102078 None:intergenic
GATTGTTAGGATCCATCACA+AGG 0.660209 5_3:+31102235 None:intergenic
TGGGTGGAAGCAGTAAAGCA+AGG 0.674055 5_3:-31102707 Msa0807850:intron
TACCTGAGCGGCGAAGATAG+CGG 0.683068 5_3:+31103541 None:intergenic
AGATTGAGTCCATTCCAGGA+AGG 0.684195 5_3:+31102853 None:intergenic
GAAACCTTGAGAATCATGGG+TGG 0.699723 5_3:-31102723 Msa0807850:CDS
CTGAGCGGCGAAGATAGCGG+CGG 0.708358 5_3:+31103544 None:intergenic
TTTGACGTAATAATATACGA+TGG 0.709980 5_3:-31102759 Msa0807850:CDS
ACGTAATGCAGAATTGACAG+AGG 0.717466 5_3:+31102209 None:intergenic
TATATTGAATTGATGCAGTG+AGG 0.746530 5_3:-31103763 Msa0807850:five_prime_UTR
TAAAGTTGTACGTACCTGAG+CGG 0.748110 5_3:+31103529 None:intergenic
TGTTAGGATCCATCACAAGG+AGG 0.756186 5_3:+31102238 None:intergenic
ATACGATGGTGTCAGCAGCG+AGG 0.764567 5_3:-31102745 Msa0807850:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATATTTCTTTTGTTTTTA+CGG + chr5_3:31101861-31101880 None:intergenic 10.0%
!!! TTTTTTATTTTTTTGTAGTT+CGG - chr5_3:31103034-31103053 Msa0807850:intron 10.0%
!!! TTTTCTTTCTATATTTATGA+TGG - chr5_3:31100578-31100597 Msa0807850:intron 15.0%
!! TTTCTTTCTATATTTATGAT+GGG - chr5_3:31100579-31100598 Msa0807850:intron 15.0%
!!! TTTTCATCAAATTTTTATCA+AGG - chr5_3:31100611-31100630 Msa0807850:intron 15.0%
!! TTACAAAATATAAAATGCAT+GGG + chr5_3:31101735-31101754 None:intergenic 15.0%
!! TTTACAAAATATAAAATGCA+TGG + chr5_3:31101736-31101755 None:intergenic 15.0%
!!! AATATTTCTTTTGTTTTTAC+GGG + chr5_3:31101860-31101879 None:intergenic 15.0%
!! AAACAAAAGAAATATTACTA+AGG - chr5_3:31101864-31101883 Msa0807850:intron 15.0%
!!! TTTTTATTTTTTTGTAGTTC+GGG - chr5_3:31103035-31103054 Msa0807850:intron 15.0%
!!! ATTTAAAATAAATGCAGTAT+AGG - chr5_3:31103547-31103566 Msa0807850:CDS 15.0%
!!! TTTAAAATAAATGCAGTATA+GGG - chr5_3:31103548-31103567 Msa0807850:CDS 15.0%
!! AATAAGATGGTTATTATCTT+TGG - chr5_3:31101803-31101822 Msa0807850:intron 20.0%
!!! TTTGGTTCAAATAAAAAAGA+TGG - chr5_3:31101821-31101840 Msa0807850:intron 20.0%
!! AGTTAAGAAATTTATTTACC+AGG + chr5_3:31101993-31102012 None:intergenic 20.0%
!! CATATAATTCTCAAAATACT+AGG + chr5_3:31102259-31102278 None:intergenic 20.0%
!!! CACTCCATATTTTTTATTTT+GGG - chr5_3:31103084-31103103 Msa0807850:CDS 20.0%
!! GATTCCCAAAATAAAAAATA+TGG + chr5_3:31103091-31103110 None:intergenic 20.0%
!!! ATTTTGGGAATCTTTAATTT+AGG - chr5_3:31103099-31103118 Msa0807850:CDS 20.0%
!!! TATTTCTTGAGTAGAAATTT+TGG - chr5_3:31103292-31103311 Msa0807850:CDS 20.0%
!! TGATCTTTAATGAAATTGAA+AGG + chr5_3:31103320-31103339 None:intergenic 20.0%
!! TTTACTTATTATTGTTCAAC+TGG - chr5_3:31103363-31103382 Msa0807850:intron 20.0%
!!! CAAATTTTTGCATTATGTTA+TGG - chr5_3:31103486-31103505 Msa0807850:intron 20.0%
!! TTAAAATAAATGCAGTATAG+GGG - chr5_3:31103549-31103568 Msa0807850:CDS 20.0%
!!! ACTAAATTACTCACTTTTCT+CGG - chr5_3:31099982-31100001 Msa0807850:CDS 25.0%
!!! TTCCATAATAGATTAGTCTT+GGG - chr5_3:31100070-31100089 Msa0807850:intron 25.0%
! ATTGCATAATATATGCTAGA+TGG - chr5_3:31100118-31100137 Msa0807850:intron 25.0%
! TTGCATAATATATGCTAGAT+GGG - chr5_3:31100119-31100138 Msa0807850:intron 25.0%
! TAGAAATTCACGTGAATAAA+TGG + chr5_3:31100162-31100181 None:intergenic 25.0%
! TATCTACTCAATTGTAAGAT+TGG - chr5_3:31100290-31100309 Msa0807850:intron 25.0%
! CAAGGTGATATATATATAGA+GGG + chr5_3:31100398-31100417 None:intergenic 25.0%
! ACAAGGTGATATATATATAG+AGG + chr5_3:31100399-31100418 None:intergenic 25.0%
! TTTGACGTAATAATATACGA+TGG - chr5_3:31100813-31100832 Msa0807850:intron 25.0%
!! TTTAAAATATATCCGCACAT+TGG - chr5_3:31100972-31100991 Msa0807850:intron 25.0%
!! AAAGATTTTTCTTTGCTCTT+TGG + chr5_3:31101472-31101491 None:intergenic 25.0%
! AAATATAAAATGCATGGGAA+AGG + chr5_3:31101730-31101749 None:intergenic 25.0%
! CCATGAAGAATATAGTAAAA+AGG + chr5_3:31101761-31101780 None:intergenic 25.0%
!! CCTTTTTACTATATTCTTCA+TGG - chr5_3:31101758-31101777 Msa0807850:intron 25.0%
! TGACATAATGAGAAATAAGA+TGG - chr5_3:31101790-31101809 Msa0807850:intron 25.0%
!!! TTAACTTGCAAATTAGATGT+CGG - chr5_3:31102007-31102026 Msa0807850:CDS 25.0%
! AATCATTAGAGAATATTTGG+TGG + chr5_3:31102387-31102406 None:intergenic 25.0%
! ACCAAATATTCTCTAATGAT+TGG - chr5_3:31102386-31102405 Msa0807850:intron 25.0%
! AATAGACTTCCAAACTTAAA+GGG + chr5_3:31103010-31103029 None:intergenic 25.0%
! AAATAGACTTCCAAACTTAA+AGG + chr5_3:31103011-31103030 None:intergenic 25.0%
!!! GCACTCCATATTTTTTATTT+TGG - chr5_3:31103083-31103102 Msa0807850:CDS 25.0%
!!! GAATCTTTAATTTAGGTTGA+GGG - chr5_3:31103106-31103125 Msa0807850:intron 25.0%
!!! AATCTTTAATTTAGGTTGAG+GGG - chr5_3:31103107-31103126 Msa0807850:intron 25.0%
! TAAAAAATAGGCATTAAACC+AGG + chr5_3:31103236-31103255 None:intergenic 25.0%
! TTGGTCTAATGGTAAAAAAT+AGG + chr5_3:31103248-31103267 None:intergenic 25.0%
! TTCTACTCAAGAAATATAGA+GGG + chr5_3:31103288-31103307 None:intergenic 25.0%
! TTTCTACTCAAGAAATATAG+AGG + chr5_3:31103289-31103308 None:intergenic 25.0%
! TTAATAATCCTCAGCATAAA+AGG + chr5_3:31103723-31103742 None:intergenic 25.0%
TATATTGAATTGATGCAGTG+AGG - chr5_3:31099809-31099828 Msa0807850:three_prime_UTR 30.0%
!! GTTTAAGATTAGCTTTGGAT+TGG - chr5_3:31099833-31099852 Msa0807850:three_prime_UTR 30.0%
!! GTTCCATAATAGATTAGTCT+TGG - chr5_3:31100069-31100088 Msa0807850:intron 30.0%
TGCATAATATATGCTAGATG+GGG - chr5_3:31100120-31100139 Msa0807850:intron 30.0%
ATATATATAGAGGGAGGAAA+TGG + chr5_3:31100389-31100408 None:intergenic 30.0%
!!! CCTTGTGTACATTTTGATTT+CGG - chr5_3:31100413-31100432 Msa0807850:intron 30.0%
TCTATTATATGGCACAAAAG+AGG + chr5_3:31100677-31100696 None:intergenic 30.0%
TTGTGCCATATAATAGATTG+TGG - chr5_3:31100680-31100699 Msa0807850:intron 30.0%
TGTGCCATATAATAGATTGT+GGG - chr5_3:31100681-31100700 Msa0807850:intron 30.0%
TCAAACGAAAGAAATTGTCA+AGG + chr5_3:31100930-31100949 None:intergenic 30.0%
! GTTTGATACTTCGATTTTGT+AGG - chr5_3:31100944-31100963 Msa0807850:intron 30.0%
GAAAACTGAAATTGGTAGAT+TGG - chr5_3:31100999-31101018 Msa0807850:intron 30.0%
!! TCTGCTGCTATTTATTTTCA+TGG + chr5_3:31101058-31101077 None:intergenic 30.0%
AAATTTCTGTGGATTTGAGA+AGG + chr5_3:31101309-31101328 None:intergenic 30.0%
TTCTCAAATCCACAGAAATT+TGG - chr5_3:31101308-31101327 Msa0807850:intron 30.0%
TCAATTCTGCATTACGTTAT+TGG - chr5_3:31101369-31101388 Msa0807850:intron 30.0%
CAATTCTGCATTACGTTATT+GGG - chr5_3:31101370-31101389 Msa0807850:intron 30.0%
AATTCTGCATTACGTTATTG+GGG - chr5_3:31101371-31101390 Msa0807850:intron 30.0%
AAACTTTGTTCCAATCGATT+GGG + chr5_3:31101538-31101557 None:intergenic 30.0%
AAAACTTTGTTCCAATCGAT+TGG + chr5_3:31101539-31101558 None:intergenic 30.0%
!! CGATTGGAACAAAGTTTTAT+TGG - chr5_3:31101541-31101560 Msa0807850:intron 30.0%
ATGATGTCATATTACTGGAT+TGG + chr5_3:31101613-31101632 None:intergenic 30.0%
! AACTGATGATGTCATATTAC+TGG + chr5_3:31101618-31101637 None:intergenic 30.0%
TCAATTCATCATTATGAGCA+CGG - chr5_3:31101889-31101908 Msa0807850:CDS 30.0%
!! AGATGTTTTTGTCAAATTCC+TGG - chr5_3:31101972-31101991 Msa0807850:CDS 30.0%
TGACTGTTATAAATAGTGAG+AGG - chr5_3:31102144-31102163 Msa0807850:CDS 30.0%
GACTGTTATAAATAGTGAGA+GGG - chr5_3:31102145-31102164 Msa0807850:CDS 30.0%
AGAATTGGAATGCCTATAAA+TGG + chr5_3:31102310-31102329 None:intergenic 30.0%
TTTATAGGCATTCCAATTCT+AGG - chr5_3:31102310-31102329 Msa0807850:intron 30.0%
TTATAGGCATTCCAATTCTA+GGG - chr5_3:31102311-31102330 Msa0807850:intron 30.0%
TCAACCCTAATTTAGGTATA+CGG - chr5_3:31102358-31102377 Msa0807850:intron 30.0%
GCCAATCATTAGAGAATATT+TGG + chr5_3:31102390-31102409 None:intergenic 30.0%
TCTAATGATTGGCAATGATT+AGG - chr5_3:31102397-31102416 Msa0807850:intron 30.0%
CAACCTAAAGTCACAATAAA+GGG + chr5_3:31102716-31102735 None:intergenic 30.0%
ACAACCTAAAGTCACAATAA+AGG + chr5_3:31102717-31102736 None:intergenic 30.0%
GGGTCTTAATTTCATACTTT+GGG - chr5_3:31103055-31103074 Msa0807850:CDS 30.0%
GGTCTTAATTTCATACTTTG+GGG - chr5_3:31103056-31103075 Msa0807850:CDS 30.0%
!! GGAATCTTTAATTTAGGTTG+AGG - chr5_3:31103105-31103124 Msa0807850:intron 30.0%
!! ATCTTTAATTTAGGTTGAGG+GGG - chr5_3:31103108-31103127 Msa0807850:intron 30.0%
!! ATCTTAAAGAGCACTTACAA+AGG - chr5_3:31103159-31103178 Msa0807850:intron 30.0%
TCATTAAAGATCAAATCGCT+TGG - chr5_3:31103327-31103346 Msa0807850:CDS 30.0%
TAATTACAAGACTTCTGTCT+TGG + chr5_3:31103665-31103684 None:intergenic 30.0%
GATTATTAATGTTACAGCAG+TGG - chr5_3:31103734-31103753 Msa0807850:exon 30.0%
!! AAGATTAGCTTTGGATTGGA+TGG - chr5_3:31099837-31099856 Msa0807850:three_prime_UTR 35.0%
!! AGATTAGCTTTGGATTGGAT+GGG - chr5_3:31099838-31099857 Msa0807850:three_prime_UTR 35.0%
AATTTCGAGCTTCACATTTC+CGG - chr5_3:31099864-31099883 Msa0807850:three_prime_UTR 35.0%
TTTAGTTGAAGCAACATCCT+CGG + chr5_3:31099968-31099987 None:intergenic 35.0%
GTCCCAAGACTAATCTATTA+TGG + chr5_3:31100075-31100094 None:intergenic 35.0%
! CACGTGAATTTCTAGACATT+AGG - chr5_3:31100168-31100187 Msa0807850:intron 35.0%
! GATGTATCAGCATTTTGCAA+TGG - chr5_3:31100217-31100236 Msa0807850:intron 35.0%
GGTGATATATATATAGAGGG+AGG + chr5_3:31100395-31100414 None:intergenic 35.0%
CCGAAATCAAAATGTACACA+AGG + chr5_3:31100416-31100435 None:intergenic 35.0%
! TGCTTGCTTCAGAAGTTTTA+GGG + chr5_3:31100490-31100509 None:intergenic 35.0%
TTTATCAAGGTTTCAAACCG+CGG - chr5_3:31100624-31100643 Msa0807850:intron 35.0%
CTCTCCCACAATCTATTATA+TGG + chr5_3:31100688-31100707 None:intergenic 35.0%
CATATAATAGATTGTGGGAG+AGG - chr5_3:31100686-31100705 Msa0807850:intron 35.0%
!! TGGAATGGACTCAATCTTTT+CGG - chr5_3:31100725-31100744 Msa0807850:intron 35.0%
TTGGCTGAGAAAACTGAAAT+TGG - chr5_3:31100991-31101010 Msa0807850:intron 35.0%
! AGCAGCAGATCTTATTTCAA+TGG - chr5_3:31101069-31101088 Msa0807850:intron 35.0%
! GCAGCAGATCTTATTTCAAT+GGG - chr5_3:31101070-31101089 Msa0807850:intron 35.0%
TGGCTACATAGATCAAATGA+CGG + chr5_3:31101190-31101209 None:intergenic 35.0%
TGATTATGTGTTGTCCAGAA+AGG - chr5_3:31101275-31101294 Msa0807850:intron 35.0%
ATTCTGCATTACGTTATTGG+GGG - chr5_3:31101372-31101391 Msa0807850:intron 35.0%
!!! CTTTGGAATGATTCTGGTTT+TGG + chr5_3:31101455-31101474 None:intergenic 35.0%
!! TTTGCTCTTTGGAATGATTC+TGG + chr5_3:31101461-31101480 None:intergenic 35.0%
TCGATTGGGCTATTTACTAA+CGG + chr5_3:31101524-31101543 None:intergenic 35.0%
TAGTAAATAGCCCAATCGAT+TGG - chr5_3:31101525-31101544 Msa0807850:intron 35.0%
ACACTGTGAATAAAGATGCT+AGG - chr5_3:31101564-31101583 Msa0807850:intron 35.0%
! ATCTCTGATTTGTCAAAACC+TGG + chr5_3:31101680-31101699 None:intergenic 35.0%
TATAAAATGCATGGGAAAGG+AGG + chr5_3:31101727-31101746 None:intergenic 35.0%
TGTTATAAATAGTGAGAGGG+AGG - chr5_3:31102148-31102167 Msa0807850:CDS 35.0%
TACTAGGTTATCTCCCAATT+TGG + chr5_3:31102243-31102262 None:intergenic 35.0%
TCCATCCTTTCTCCATTTAT+AGG - chr5_3:31102295-31102314 Msa0807850:intron 35.0%
GAATGCCTATAAATGGAGAA+AGG + chr5_3:31102303-31102322 None:intergenic 35.0%
GAGACCGTATACCTAAATTA+GGG + chr5_3:31102365-31102384 None:intergenic 35.0%
TGATTGGCAATGATTAGGTT+AGG - chr5_3:31102402-31102421 Msa0807850:intron 35.0%
! AGAAGAAGCCTTTTTACCAT+TGG - chr5_3:31102457-31102476 Msa0807850:intron 35.0%
TTGCCCTTTATTGTGACTTT+AGG - chr5_3:31102710-31102729 Msa0807850:CDS 35.0%
TATGTTCGGTACTAAAGGTT+TGG + chr5_3:31102861-31102880 None:intergenic 35.0%
CAATATATGCGGTACAGTTT+GGG - chr5_3:31102958-31102977 Msa0807850:intron 35.0%
CGGGTCTTAATTTCATACTT+TGG - chr5_3:31103054-31103073 Msa0807850:CDS 35.0%
!! TCTTTAATTTAGGTTGAGGG+GGG - chr5_3:31103109-31103128 Msa0807850:intron 35.0%
AAAATAGGCATTAAACCAGG+AGG + chr5_3:31103233-31103252 None:intergenic 35.0%
TTTACCATTAGACCAAACCA+TGG - chr5_3:31103252-31103271 Msa0807850:CDS 35.0%
TGTGTTTGACACTTGTCATA+TGG - chr5_3:31103416-31103435 Msa0807850:intron 35.0%
GTGTTTGACACTTGTCATAT+GGG - chr5_3:31103417-31103436 Msa0807850:intron 35.0%
AAATAAATGCAGTATAGGGG+AGG - chr5_3:31103552-31103571 Msa0807850:CDS 35.0%
CTTGAATTTCTTGAGGCAAA+GGG + chr5_3:31103620-31103639 None:intergenic 35.0%
ACCTTTCCTTGAATTTCTTG+AGG + chr5_3:31103627-31103646 None:intergenic 35.0%
CAAGAAATTCAAGGAAAGGT+TGG - chr5_3:31103627-31103646 Msa0807850:CDS 35.0%
AAGACTTCTGTCTTGGAATT+TGG + chr5_3:31103658-31103677 None:intergenic 35.0%
CTGCAAATTTGTGCATGAAT+TGG - chr5_3:31103769-31103788 Msa0807850:five_prime_UTR 35.0%
!! GAGGCGTTTAAGATTAGCTT+TGG - chr5_3:31099828-31099847 Msa0807850:three_prime_UTR 40.0%
GAAGTTGAACGACAAAGAAC+CGG + chr5_3:31099886-31099905 None:intergenic 40.0%
! TGTTCGAACAAAACCCCTTT+TGG - chr5_3:31099906-31099925 Msa0807850:CDS 40.0%
AGAAGAAGACACTGCCAAAA+GGG + chr5_3:31099923-31099942 None:intergenic 40.0%
AAGAAGAAGACACTGCCAAA+AGG + chr5_3:31099924-31099943 None:intergenic 40.0%
TTCTTCTTCTTCTTCTTCCG+AGG - chr5_3:31099948-31099967 Msa0807850:CDS 40.0%
!! TTACTCACTTTTCTCGGCAA+AGG - chr5_3:31099988-31100007 Msa0807850:CDS 40.0%
TAAAGTTGTACGTACCTGAG+CGG + chr5_3:31100046-31100065 None:intergenic 40.0%
CGTGAATAAATGGAGTGTAC+AGG + chr5_3:31100152-31100171 None:intergenic 40.0%
! TATCAGCATTTTGCAATGGC+TGG - chr5_3:31100221-31100240 Msa0807850:intron 40.0%
!! GCTTGCTTCAGAAGTTTTAG+GGG + chr5_3:31100489-31100508 None:intergenic 40.0%
! CTGCTTGCTTCAGAAGTTTT+AGG + chr5_3:31100491-31100510 None:intergenic 40.0%
GCCTTGAGTCATATTAAGCT+GGG + chr5_3:31100517-31100536 None:intergenic 40.0%
TGCCTTGAGTCATATTAAGC+TGG + chr5_3:31100518-31100537 None:intergenic 40.0%
AATATGACTCAAGGCACACT+TGG - chr5_3:31100522-31100541 Msa0807850:intron 40.0%
GAAAAGATTGAGTCCATTCC+AGG + chr5_3:31100726-31100745 None:intergenic 40.0%
GAGGAAACCTTGAGAATCAT+GGG - chr5_3:31100846-31100865 Msa0807850:intron 40.0%
! GAAGCAGTAAAGCAAGGTTT+TGG - chr5_3:31100871-31100890 Msa0807850:intron 40.0%
! GCAGATCTTATTTCAATGGG+AGG - chr5_3:31101073-31101092 Msa0807850:intron 40.0%
GAGGATGAGTTCAGAAACAT+GGG - chr5_3:31101092-31101111 Msa0807850:intron 40.0%
TTCAGAAACATGGGACACTT+TGG - chr5_3:31101101-31101120 Msa0807850:intron 40.0%
GGACACTTTGGATCAAATTC+TGG - chr5_3:31101113-31101132 Msa0807850:intron 40.0%
CACTTTGGATCAAATTCTGG+AGG - chr5_3:31101116-31101135 Msa0807850:intron 40.0%
CGATCTTTATCCACTGTGTA+GGG + chr5_3:31101214-31101233 None:intergenic 40.0%
CCTACACAGTGGATAAAGAT+CGG - chr5_3:31101212-31101231 Msa0807850:intron 40.0%
GATTGTTAGGATCCATCACA+AGG + chr5_3:31101340-31101359 None:intergenic 40.0%
TTGACAGAGGTTGGATTGTT+AGG + chr5_3:31101353-31101372 None:intergenic 40.0%
AATGCAGAATTGACAGAGGT+TGG + chr5_3:31101362-31101381 None:intergenic 40.0%
ACGTAATGCAGAATTGACAG+AGG + chr5_3:31101366-31101385 None:intergenic 40.0%
TTTGTAACAAACTAGCCACG+TGG - chr5_3:31102097-31102116 Msa0807850:CDS 40.0%
CTTGTCCAAGAAACAAGTCT+AGG - chr5_3:31102193-31102212 Msa0807850:CDS 40.0%
! GGTCAATGGTTAGCCAAATT+GGG - chr5_3:31102227-31102246 Msa0807850:CDS 40.0%
GCCTATAAATGGAGAAAGGA+TGG + chr5_3:31102299-31102318 None:intergenic 40.0%
!! GCATTCCAATTCTAGGGTAT+GGG - chr5_3:31102317-31102336 Msa0807850:intron 40.0%
GTTGAACCTGACAAAAGAAG+GGG + chr5_3:31102343-31102362 None:intergenic 40.0%
GGTTGAACCTGACAAAAGAA+GGG + chr5_3:31102344-31102363 None:intergenic 40.0%
GTCAGGTTCAACCCTAATTT+AGG - chr5_3:31102351-31102370 Msa0807850:intron 40.0%
GGAGACCGTATACCTAAATT+AGG + chr5_3:31102366-31102385 None:intergenic 40.0%
GGAAAGCTCCAATGGTAAAA+AGG + chr5_3:31102468-31102487 None:intergenic 40.0%
!! AGGATTGTGACTTTAGGTTG+AGG - chr5_3:31102520-31102539 Msa0807850:intron 40.0%
!! GGATTGTGACTTTAGGTTGA+GGG - chr5_3:31102521-31102540 Msa0807850:intron 40.0%
!! GATTGTGACTTTAGGTTGAG+GGG - chr5_3:31102522-31102541 Msa0807850:intron 40.0%
GTTGTTGTCATGTGACTGAA+AGG - chr5_3:31102567-31102586 Msa0807850:CDS 40.0%
AACAGCCTCTTGTGTAAAAC+AGG - chr5_3:31102610-31102629 Msa0807850:intron 40.0%
ACAGCCTCTTGTGTAAAACA+GGG - chr5_3:31102611-31102630 Msa0807850:intron 40.0%
! CTTACCCTGTTTTACACAAG+AGG + chr5_3:31102618-31102637 None:intergenic 40.0%
CTCTTGTGTAAAACAGGGTA+AGG - chr5_3:31102616-31102635 Msa0807850:intron 40.0%
CGTACAATACACCAAATGGT+GGG - chr5_3:31102642-31102661 Msa0807850:intron 40.0%
AGTCTTTAGTCTAGTGATCC+TGG - chr5_3:31102797-31102816 Msa0807850:CDS 40.0%
ATATTGCCTACCCTGCTATT+TGG + chr5_3:31102944-31102963 None:intergenic 40.0%
GCAATATATGCGGTACAGTT+TGG - chr5_3:31102957-31102976 Msa0807850:intron 40.0%
!! CTTTAAGATCTTCCCTACCT+TGG + chr5_3:31103148-31103167 None:intergenic 40.0%
!! AACTCCATGGTTTGGTCTAA+TGG + chr5_3:31103259-31103278 None:intergenic 40.0%
CCTTGAATTTCTTGAGGCAA+AGG + chr5_3:31103621-31103640 None:intergenic 40.0%
CCTTTGCCTCAAGAAATTCA+AGG - chr5_3:31103618-31103637 Msa0807850:CDS 40.0%
GCCTCAAGAAATTCAAGGAA+AGG - chr5_3:31103623-31103642 Msa0807850:CDS 40.0%
GAAATTCAAGGAAAGGTTGG+CGG - chr5_3:31103630-31103649 Msa0807850:CDS 40.0%
CTCAGCATAAAAGGAGAGAA+AGG + chr5_3:31103714-31103733 None:intergenic 40.0%
! CTTTCTCTCCTTTTATGCTG+AGG - chr5_3:31103712-31103731 Msa0807850:CDS 40.0%
GAAGAAGACACTGCCAAAAG+GGG + chr5_3:31099922-31099941 None:intergenic 45.0%
! TTGGGACCTCCAATTTTCGT+TGG - chr5_3:31100088-31100107 Msa0807850:intron 45.0%
! ACCTCCAATTTTCGTTGGCA+GGG - chr5_3:31100093-31100112 Msa0807850:intron 45.0%
ATGTCCCTGCCAACGAAAAT+TGG + chr5_3:31100100-31100119 None:intergenic 45.0%
GATAGTCAGCAGTGATGTCT+TGG + chr5_3:31100274-31100293 None:intergenic 45.0%
CGAATGCAGCAAGAACCTTT+CGG - chr5_3:31100325-31100344 Msa0807850:intron 45.0%
TTTCCAACCTAACAGCCGAA+AGG + chr5_3:31100343-31100362 None:intergenic 45.0%
TGGAAAAGCGACACACACTT+TGG + chr5_3:31100369-31100388 None:intergenic 45.0%
GCCCAGCTTAATATGACTCA+AGG - chr5_3:31100513-31100532 Msa0807850:intron 45.0%
AGATTGAGTCCATTCCAGGA+AGG + chr5_3:31100722-31100741 None:intergenic 45.0%
TTTCGGTACTTGCACTTGAG+AGG - chr5_3:31100742-31100761 Msa0807850:intron 45.0%
TTGCACTTGAGAGGCTTGTA+GGG - chr5_3:31100751-31100770 Msa0807850:intron 45.0%
! TGAGAGGCTTGTAGGGTTTT+TGG - chr5_3:31100758-31100777 Msa0807850:intron 45.0%
! GAGAGGCTTGTAGGGTTTTT+GGG - chr5_3:31100759-31100778 Msa0807850:intron 45.0%
! AGAGGCTTGTAGGGTTTTTG+GGG - chr5_3:31100760-31100779 Msa0807850:intron 45.0%
!! CTTGTAGGGTTTTTGGGGAT+GGG - chr5_3:31100765-31100784 Msa0807850:intron 45.0%
CGAGGAAACCTTGAGAATCA+TGG - chr5_3:31100845-31100864 Msa0807850:intron 45.0%
GAAACCTTGAGAATCATGGG+TGG - chr5_3:31100849-31100868 Msa0807850:intron 45.0%
! CAGTTTTCTCAGCCAATGTG+CGG + chr5_3:31100987-31101006 None:intergenic 45.0%
GGAGGATGAGTTCAGAAACA+TGG - chr5_3:31101091-31101110 Msa0807850:intron 45.0%
CTTTATCCACTGTGTAGGGT+TGG + chr5_3:31101210-31101229 None:intergenic 45.0%
CCGATCTTTATCCACTGTGT+AGG + chr5_3:31101215-31101234 None:intergenic 45.0%
AGAAGGCAGAAGATCCTTTC+TGG + chr5_3:31101292-31101311 None:intergenic 45.0%
AGGAGGCAACCAAATTTCTG+TGG + chr5_3:31101320-31101339 None:intergenic 45.0%
ATTTGGTTGCCTCCTTGTGA+TGG - chr5_3:31101325-31101344 Msa0807850:intron 45.0%
TGTTAGGATCCATCACAAGG+AGG + chr5_3:31101337-31101356 None:intergenic 45.0%
! TTATTGGGGGTGTGCAATTC+AGG - chr5_3:31101385-31101404 Msa0807850:intron 45.0%
!!! TTCTGGTTTTGGTTGCTGAG+AGG + chr5_3:31101444-31101463 None:intergenic 45.0%
GAGATGAAAGCAGAAGGCAA+GGG + chr5_3:31101497-31101516 None:intergenic 45.0%
TGAGATGAAAGCAGAAGGCA+AGG + chr5_3:31101498-31101517 None:intergenic 45.0%
GGACTTGAGATGAAAGCAGA+AGG + chr5_3:31101503-31101522 None:intergenic 45.0%
TCAGTTACTCTCTTCATGCC+AGG - chr5_3:31101659-31101678 Msa0807850:intron 45.0%
TAAATAGTGAGAGGGAGGAG+AGG - chr5_3:31102153-31102172 Msa0807850:CDS 45.0%
! GGGTCAATGGTTAGCCAAAT+TGG - chr5_3:31102226-31102245 Msa0807850:CDS 45.0%
!! GGCATTCCAATTCTAGGGTA+TGG - chr5_3:31102316-31102335 Msa0807850:intron 45.0%
GGGTTGAACCTGACAAAAGA+AGG + chr5_3:31102345-31102364 None:intergenic 45.0%
GGCAATGATTAGGTTAGGTG+CGG - chr5_3:31102407-31102426 Msa0807850:intron 45.0%
ATTAGGTTAGGTGCGGAAGA+TGG - chr5_3:31102414-31102433 Msa0807850:intron 45.0%
GTAATTGTTCAGTGCTCAGC+CGG + chr5_3:31102496-31102515 None:intergenic 45.0%
!! GGCTGAGCACTGAACAATTA+CGG - chr5_3:31102495-31102514 Msa0807850:intron 45.0%
!! GCTGAGCACTGAACAATTAC+GGG - chr5_3:31102496-31102515 Msa0807850:intron 45.0%
!! CTGAGCACTGAACAATTACG+GGG - chr5_3:31102497-31102516 Msa0807850:intron 45.0%
!! TTTAGGTTGAGGGGTAACCT+TGG - chr5_3:31102531-31102550 Msa0807850:intron 45.0%
GTCATGTGACTGAAAGGTCA+CGG - chr5_3:31102573-31102592 Msa0807850:CDS 45.0%
TCATGTGACTGAAAGGTCAC+GGG - chr5_3:31102574-31102593 Msa0807850:CDS 45.0%
! TTACACAAGAGGCTGTTTCC+AGG + chr5_3:31102607-31102626 None:intergenic 45.0%
GCTGCGTACAATACACCAAA+TGG - chr5_3:31102638-31102657 Msa0807850:intron 45.0%
GCGTACAATACACCAAATGG+TGG - chr5_3:31102641-31102660 Msa0807850:intron 45.0%
AGTCACAATAAAGGGCAACC+CGG + chr5_3:31102708-31102727 None:intergenic 45.0%
AAGCTTTACACAAACAGGGG+GGG + chr5_3:31102757-31102776 None:intergenic 45.0%
CAAGCTTTACACAAACAGGG+GGG + chr5_3:31102758-31102777 None:intergenic 45.0%
CCAAGCTTTACACAAACAGG+GGG + chr5_3:31102759-31102778 None:intergenic 45.0%
GCCAAGCTTTACACAAACAG+GGG + chr5_3:31102760-31102779 None:intergenic 45.0%
GGCCAAGCTTTACACAAACA+GGG + chr5_3:31102761-31102780 None:intergenic 45.0%
TGGCCAAGCTTTACACAAAC+AGG + chr5_3:31102762-31102781 None:intergenic 45.0%
AGACTGACCATGACAAACGT+TGG + chr5_3:31102782-31102801 None:intergenic 45.0%
! GGGGTATGTTCAGTCTCTTT+TGG - chr5_3:31102834-31102853 Msa0807850:CDS 45.0%
GGGGATATGTTCGGTACTAA+AGG + chr5_3:31102866-31102885 None:intergenic 45.0%
! TTTTAGGCTTGACACTTGGG+GGG + chr5_3:31102885-31102904 None:intergenic 45.0%
! CTTTTAGGCTTGACACTTGG+GGG + chr5_3:31102886-31102905 None:intergenic 45.0%
! CCTTTTAGGCTTGACACTTG+GGG + chr5_3:31102887-31102906 None:intergenic 45.0%
! GCCTTTTAGGCTTGACACTT+GGG + chr5_3:31102888-31102907 None:intergenic 45.0%
!! TTAGAGCACCTTCGCCTTTT+AGG + chr5_3:31102901-31102920 None:intergenic 45.0%
!! TAAAAGGCGAAGGTGCTCTA+AGG - chr5_3:31102900-31102919 Msa0807850:intron 45.0%
!! AAAAGGCGAAGGTGCTCTAA+GGG - chr5_3:31102901-31102920 Msa0807850:intron 45.0%
!! ATTTGGTGCCAATGGTATGG+AGG + chr5_3:31102927-31102946 None:intergenic 45.0%
!! GCTATTTGGTGCCAATGGTA+TGG + chr5_3:31102930-31102949 None:intergenic 45.0%
TACCATTGGCACCAAATAGC+AGG - chr5_3:31102930-31102949 Msa0807850:intron 45.0%
ACCATTGGCACCAAATAGCA+GGG - chr5_3:31102931-31102950 Msa0807850:intron 45.0%
AGCAGGGTAGGCAATATATG+CGG - chr5_3:31102947-31102966 Msa0807850:intron 45.0%
! GGTTGCAGACCCTTTAAGTT+TGG - chr5_3:31102998-31103017 Msa0807850:intron 45.0%
ATCTTCCCTACCTTGGATTG+AGG + chr5_3:31103141-31103160 None:intergenic 45.0%
ATTTACCTCCCCTCCCATAT+AGG - chr5_3:31103189-31103208 Msa0807850:intron 45.0%
TTTACCTCCCCTCCCATATA+GGG - chr5_3:31103190-31103209 Msa0807850:intron 45.0%
GGTTCAATCCTCCCCTATAT+GGG + chr5_3:31103205-31103224 None:intergenic 45.0%
AGGTTCAATCCTCCCCTATA+TGG + chr5_3:31103206-31103225 None:intergenic 45.0%
ATATAGGGGAGGATTGAACC+TGG - chr5_3:31103205-31103224 Msa0807850:intron 45.0%
CAAGTTCTGCACTTCTCACA+TGG - chr5_3:31103461-31103480 Msa0807850:intron 45.0%
! TCTGAGCTTTTGGTAGAAGC+CGG - chr5_3:31103576-31103595 Msa0807850:CDS 45.0%
!!! TTTTATTTACATAAATAAAA+TGG - chr5_3:31101913-31101932 Msa0807850:CDS 5.0%
!! CTCACTTTTCTCGGCAAAGG+TGG - chr5_3:31099991-31100010 Msa0807850:CDS 50.0%
! GACCTCCAATTTTCGTTGGC+AGG - chr5_3:31100092-31100111 Msa0807850:intron 50.0%
TCCCTGCCAACGAAAATTGG+AGG + chr5_3:31100097-31100116 None:intergenic 50.0%
GCAAGAACCTTTCGGCTGTT+AGG - chr5_3:31100333-31100352 Msa0807850:intron 50.0%
GAACCTTTCGGCTGTTAGGT+TGG - chr5_3:31100337-31100356 Msa0807850:intron 50.0%
ATGACTCAAGGCACACTTGG+AGG - chr5_3:31100525-31100544 Msa0807850:intron 50.0%
TGACTCAAGGCACACTTGGA+GGG - chr5_3:31100526-31100545 Msa0807850:intron 50.0%
AAGGTTTCAAACCGCGGTTG+CGG - chr5_3:31100630-31100649 Msa0807850:intron 50.0%
TAGATTGTGGGAGAGGAGCT+TGG - chr5_3:31100693-31100712 Msa0807850:intron 50.0%
CTTGCACTTGAGAGGCTTGT+AGG - chr5_3:31100750-31100769 Msa0807850:intron 50.0%
!! GCTTGTAGGGTTTTTGGGGA+TGG - chr5_3:31100764-31100783 Msa0807850:intron 50.0%
GCTTCCACCCATGATTCTCA+AGG + chr5_3:31100856-31100875 None:intergenic 50.0%
TGGGTGGAAGCAGTAAAGCA+AGG - chr5_3:31100865-31100884 Msa0807850:intron 50.0%
TCCTTCACTCCTGAGACTTG+TGG - chr5_3:31101026-31101045 Msa0807850:intron 50.0%
TCCACAAGTCTCAGGAGTGA+AGG + chr5_3:31101030-31101049 None:intergenic 50.0%
TGGCTTCATCCACAAGTCTC+AGG + chr5_3:31101038-31101057 None:intergenic 50.0%
ATGTAGCCAACCCTACACAG+TGG - chr5_3:31101201-31101220 Msa0807850:intron 50.0%
! GCTCAAGTTTCAGGCGCTTT+TGG - chr5_3:31101413-31101432 Msa0807850:intron 50.0%
TCCTCTCACAGCGCAACTAA+GGG + chr5_3:31102067-31102086 None:intergenic 50.0%
ATCCTCTCACAGCGCAACTA+AGG + chr5_3:31102068-31102087 None:intergenic 50.0%
TAGTTGCGCTGTGAGAGGAT+AGG - chr5_3:31102068-31102087 Msa0807850:CDS 50.0%
TAACAAACTAGCCACGTGGC+AGG - chr5_3:31102101-31102120 Msa0807850:CDS 50.0%
GTGGCAGGTCAGTTAGAAGA+AGG - chr5_3:31102116-31102135 Msa0807850:CDS 50.0%
! GGCGACCTAGACTTGTTTCT+TGG + chr5_3:31102201-31102220 None:intergenic 50.0%
GGCTAACCATTGACCCTTGA+CGG + chr5_3:31102222-31102241 None:intergenic 50.0%
! TATGGGCCCCTTCTTTTGTC+AGG - chr5_3:31102334-31102353 Msa0807850:intron 50.0%
CATTGGAGCTTTCCTTGAGC+CGG - chr5_3:31102474-31102493 Msa0807850:intron 50.0%
! AGCACTGAACAATTACGGGG+AGG - chr5_3:31102500-31102519 Msa0807850:intron 50.0%
ACGGGGAGGATTGTGACTTT+AGG - chr5_3:31102514-31102533 Msa0807850:intron 50.0%
CAACTTTACCAGTTGCGCCA+AGG + chr5_3:31102551-31102570 None:intergenic 50.0%
AACAGGGGGGGTGACTTAAA+GGG + chr5_3:31102745-31102764 None:intergenic 50.0%
AAACAGGGGGGGTGACTTAA+AGG + chr5_3:31102746-31102765 None:intergenic 50.0%
CCCCCTGTTTGTGTAAAGCT+TGG - chr5_3:31102756-31102775 Msa0807850:CDS 50.0%
AGCTTGGCCAACGTTTGTCA+TGG - chr5_3:31102772-31102791 Msa0807850:CDS 50.0%
ATCCTGGTCAGTCATCCTCA+GGG - chr5_3:31102813-31102832 Msa0807850:CDS 50.0%
GACACTTGGGGGGATATGTT+CGG + chr5_3:31102875-31102894 None:intergenic 50.0%
CCCCAAGTGTCAAGCCTAAA+AGG - chr5_3:31102884-31102903 Msa0807850:intron 50.0%
! CGCCTTTTAGGCTTGACACT+TGG + chr5_3:31102889-31102908 None:intergenic 50.0%
GTGTCAAGCCTAAAAGGCGA+AGG - chr5_3:31102890-31102909 Msa0807850:intron 50.0%
TCTAAGGGCCTCCATACCAT+TGG - chr5_3:31102916-31102935 Msa0807850:intron 50.0%
!! ACCCTGCTATTTGGTGCCAA+TGG + chr5_3:31102935-31102954 None:intergenic 50.0%
TTGGCACCAAATAGCAGGGT+AGG - chr5_3:31102935-31102954 Msa0807850:intron 50.0%
AGTTTGGGAGCCATTTGACC+TGG - chr5_3:31102973-31102992 Msa0807850:intron 50.0%
GTTTGGGAGCCATTTGACCT+GGG - chr5_3:31102974-31102993 Msa0807850:intron 50.0%
ATGCTGCCTCAATCCAAGGT+AGG - chr5_3:31103132-31103151 Msa0807850:intron 50.0%
TGCTGCCTCAATCCAAGGTA+GGG - chr5_3:31103133-31103152 Msa0807850:intron 50.0%
TTACCTCCCCTCCCATATAG+GGG - chr5_3:31103191-31103210 Msa0807850:intron 50.0%
AATCCTCCCCTATATGGGAG+GGG + chr5_3:31103200-31103219 None:intergenic 50.0%
CAATCCTCCCCTATATGGGA+GGG + chr5_3:31103201-31103220 None:intergenic 50.0%
TCAATCCTCCCCTATATGGG+AGG + chr5_3:31103202-31103221 None:intergenic 50.0%
GCATTAAACCAGGAGGTTCC+AGG + chr5_3:31103226-31103245 None:intergenic 50.0%
GGCAACTCAACTCCATGGTT+TGG + chr5_3:31103267-31103286 None:intergenic 50.0%
TAGAGGGCAACTCAACTCCA+TGG + chr5_3:31103272-31103291 None:intergenic 50.0%
! TAGGGGAGGATCTGAGCTTT+TGG - chr5_3:31103566-31103585 Msa0807850:CDS 50.0%
TGGTAGAAGCCGGAGATCAA+AGG - chr5_3:31103586-31103605 Msa0807850:CDS 50.0%
GATGACACGCCTTTGATCTC+CGG + chr5_3:31103598-31103617 None:intergenic 50.0%
TTTCTCGGCAAAGGTGGCTC+TGG - chr5_3:31099997-31100016 Msa0807850:CDS 55.0%
TACCTGAGCGGCGAAGATAG+CGG + chr5_3:31100034-31100053 None:intergenic 55.0%
GACTCAAGGCACACTTGGAG+GGG - chr5_3:31100527-31100546 Msa0807850:intron 55.0%
! TCAAACCGCGGTTGCGGTTT+TGG - chr5_3:31100636-31100655 Msa0807850:intron 55.0%
CACATCCAAAACCGCAACCG+CGG + chr5_3:31100644-31100663 None:intergenic 55.0%
GCTTGGCATCCTTCCTGGAA+TGG - chr5_3:31100710-31100729 Msa0807850:intron 55.0%
! ATACGATGGTGTCAGCAGCG+AGG - chr5_3:31100827-31100846 Msa0807850:intron 55.0%
CAGGCTGGTGCTCAAGTTTC+AGG - chr5_3:31101404-31101423 Msa0807850:intron 55.0%
ACCCTTAGTTGCGCTGTGAG+AGG - chr5_3:31102063-31102082 Msa0807850:CDS 55.0%
CTTCTAACTGACCTGCCACG+TGG + chr5_3:31102115-31102134 None:intergenic 55.0%
ACAAGTCTAGGTCGCCGTCA+AGG - chr5_3:31102205-31102224 Msa0807850:CDS 55.0%
CAAGTCTAGGTCGCCGTCAA+GGG - chr5_3:31102206-31102225 Msa0807850:CDS 55.0%
AGGGGCCCATACCCTAGAAT+TGG + chr5_3:31102325-31102344 None:intergenic 55.0%
! AGGTGCGGAAGATGGACTTG+TGG - chr5_3:31102422-31102441 Msa0807850:intron 55.0%
CGGCTCAAGGAAAGCTCCAA+TGG + chr5_3:31102476-31102495 None:intergenic 55.0%
AAGGTCACGGGTTCAAGTCC+TGG - chr5_3:31102586-31102605 Msa0807850:CDS 55.0%
CTAGAGCTCCCGCATATGCA+GGG + chr5_3:31102681-31102700 None:intergenic 55.0%
ACTAGAGCTCCCGCATATGC+AGG + chr5_3:31102682-31102701 None:intergenic 55.0%
ACAGGGGGGGTGACTTAAAG+GGG + chr5_3:31102744-31102763 None:intergenic 55.0%
GATCCTGGTCAGTCATCCTC+AGG - chr5_3:31102812-31102831 Msa0807850:CDS 55.0%
TCCTGGTCAGTCATCCTCAG+GGG - chr5_3:31102814-31102833 Msa0807850:CDS 55.0%
GAGACTGAACATACCCCCTG+AGG + chr5_3:31102831-31102850 None:intergenic 55.0%
CTGCAACCTCCCAGGTCAAA+TGG + chr5_3:31102986-31103005 None:intergenic 55.0%
TAAAGGGTCTGCAACCTCCC+AGG + chr5_3:31102994-31103013 None:intergenic 55.0%
GGATTGAACCTGGAACCTCC+TGG - chr5_3:31103215-31103234 Msa0807850:intron 55.0%
TCAAGGCACACTTGGAGGGG+TGG - chr5_3:31100530-31100549 Msa0807850:intron 60.0%
CAAGGCACACTTGGAGGGGT+GGG - chr5_3:31100531-31100550 Msa0807850:intron 60.0%
GAGGAGCTTGGCATCCTTCC+TGG - chr5_3:31100705-31100724 Msa0807850:intron 60.0%
! TGGGGGTGTGCAATTCAGGC+TGG - chr5_3:31101389-31101408 Msa0807850:intron 60.0%
AGTGAGAGGGAGGAGAGGAG+AGG - chr5_3:31102158-31102177 Msa0807850:CDS 60.0%
AGGTCGCCGTCAAGGGTCAA+TGG - chr5_3:31102213-31102232 Msa0807850:CDS 60.0%
! TTCAGTGCTCAGCCGGCTCA+AGG + chr5_3:31102489-31102508 None:intergenic 60.0%
AGGGGTAACCTTGGCGCAAC+TGG - chr5_3:31102540-31102559 Msa0807850:intron 60.0%
! CAAATGGTGGGACCCCTTCC+CGG - chr5_3:31102654-31102673 Msa0807850:intron 60.0%
CATATGCAGGGTCCGGGAAG+GGG + chr5_3:31102669-31102688 None:intergenic 60.0%
GCATATGCAGGGTCCGGGAA+GGG + chr5_3:31102670-31102689 None:intergenic 60.0%
CTTCCCGGACCCTGCATATG+CGG - chr5_3:31102669-31102688 Msa0807850:intron 60.0%
TTCCCGGACCCTGCATATGC+GGG - chr5_3:31102670-31102689 Msa0807850:intron 60.0%
! ATGCGGGAGCTCTAGTGAGC+CGG - chr5_3:31102686-31102705 Msa0807850:intron 60.0%
GGGGGGTGACTTAAAGGGGT+AGG + chr5_3:31102740-31102759 None:intergenic 60.0%
CCTGGTCAGTCATCCTCAGG+GGG - chr5_3:31102815-31102834 Msa0807850:CDS 60.0%
TGGGAGCCATTTGACCTGGG+AGG - chr5_3:31102977-31102996 Msa0807850:intron 60.0%
GGGGATGCTGCCTCAATCCA+AGG - chr5_3:31103128-31103147 Msa0807850:intron 60.0%
! CTGAGCGGCGAAGATAGCGG+CGG + chr5_3:31100031-31100050 None:intergenic 65.0%
GAGAGGGAGGAGAGGAGAGG+AGG - chr5_3:31102161-31102180 Msa0807850:CDS 65.0%
GGAGGAGAGGAGAGGAGGCT+TGG - chr5_3:31102166-31102185 Msa0807850:CDS 65.0%
CGGGAAGGGGTCCCACCATT+TGG + chr5_3:31102656-31102675 None:intergenic 65.0%
CGCATATGCAGGGTCCGGGA+AGG + chr5_3:31102671-31102690 None:intergenic 65.0%
CTCCCGCATATGCAGGGTCC+GGG + chr5_3:31102675-31102694 None:intergenic 65.0%
GCTCCCGCATATGCAGGGTC+CGG + chr5_3:31102676-31102695 None:intergenic 65.0%
! TGCGGGAGCTCTAGTGAGCC+GGG - chr5_3:31102687-31102706 Msa0807850:intron 65.0%
CCCCCTGAGGATGACTGACC+AGG + chr5_3:31102818-31102837 None:intergenic 65.0%
CCTCCCCTATATGGGAGGGG+AGG + chr5_3:31103197-31103216 None:intergenic 65.0%
CCTCCCCTCCCATATAGGGG+AGG - chr5_3:31103194-31103213 Msa0807850:intron 65.0%
! AGCGGCGAAGATAGCGGCGG+TGG + chr5_3:31100028-31100047 None:intergenic 70.0%
CGCCGCTATCTTCGCCGCTC+AGG - chr5_3:31100029-31100048 Msa0807850:intron 70.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 31099785 31103809 31099785 ID=Msa0807850;Name=Msa0807850
chr5_3 mRNA 31099785 31103809 31099785 ID=Msa0807850-mRNA-1;Parent=Msa0807850;Name=Msa0807850-mRNA-1;_AED=0.14;_eAED=0.14;_QI=71|0.83|0.71|1|1|1|7|114|401
chr5_3 exon 31099785 31100030 31099785 ID=Msa0807850-mRNA-1:exon:10379;Parent=Msa0807850-mRNA-1
chr5_3 exon 31101882 31102271 31101882 ID=Msa0807850-mRNA-1:exon:10378;Parent=Msa0807850-mRNA-1
chr5_3 exon 31102550 31102628 31102550 ID=Msa0807850-mRNA-1:exon:10377;Parent=Msa0807850-mRNA-1
chr5_3 exon 31102708 31102898 31102708 ID=Msa0807850-mRNA-1:exon:10376;Parent=Msa0807850-mRNA-1
chr5_3 exon 31103046 31103120 31103046 ID=Msa0807850-mRNA-1:exon:10375;Parent=Msa0807850-mRNA-1
chr5_3 exon 31103224 31103367 31103224 ID=Msa0807850-mRNA-1:exon:10374;Parent=Msa0807850-mRNA-1
chr5_3 exon 31103544 31103809 31103544 ID=Msa0807850-mRNA-1:exon:10373;Parent=Msa0807850-mRNA-1
chr5_3 five_prime_UTR 31103739 31103809 31103739 ID=Msa0807850-mRNA-1:five_prime_utr;Parent=Msa0807850-mRNA-1
chr5_3 CDS 31103544 31103738 31103544 ID=Msa0807850-mRNA-1:cds;Parent=Msa0807850-mRNA-1
chr5_3 CDS 31103224 31103367 31103224 ID=Msa0807850-mRNA-1:cds;Parent=Msa0807850-mRNA-1
chr5_3 CDS 31103046 31103120 31103046 ID=Msa0807850-mRNA-1:cds;Parent=Msa0807850-mRNA-1
chr5_3 CDS 31102708 31102898 31102708 ID=Msa0807850-mRNA-1:cds;Parent=Msa0807850-mRNA-1
chr5_3 CDS 31102550 31102628 31102550 ID=Msa0807850-mRNA-1:cds;Parent=Msa0807850-mRNA-1
chr5_3 CDS 31101882 31102271 31101882 ID=Msa0807850-mRNA-1:cds;Parent=Msa0807850-mRNA-1
chr5_3 CDS 31099899 31100030 31099899 ID=Msa0807850-mRNA-1:cds;Parent=Msa0807850-mRNA-1
chr5_3 three_prime_UTR 31099785 31099898 31099785 ID=Msa0807850-mRNA-1:three_prime_utr;Parent=Msa0807850-mRNA-1
Gene Sequence

>Msa0807850

ATGGGTTCAATTTCGAGCTTCACATTTCCGGTTCTTTGTCGTTCAACTTCTGTTCGAACAAAACCCCTTTTGGCAGTGTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCGAGGATGTTGCTTCAACTAAATTACTCACTTTTCTCGGCAAAGGTGGCTCTGGCAAAACCACCGCCGCTATCTTCGCCGCTCAGCATTTTGCAATGGCTGGACTGAACACATGTTTAGTGATACATAGCCAAGACATCACTGCTGACTATCTACTCAATTGTAAGATTGGAACTTCACATGTCGAATGCAGCAAGAACCTTTCGGCTGTTAGGTTGGAAACAACCAAAATGCTTCTTGAACCCCTAAAACTTCTGAAGCAAGCAGATGCCCAGCTTAATATGACTCAAGGCACACTTGGAGGGATTGTGGGAGAGGAGCTTGGCATCCTTCCTGGAATGGACTCAATCTTTTCGGTACTTGCACTTGAGAGGCTTGTAGGGTTTTTGGGGATGGGATCTTCAAAGAGTCAACAAGATAAATTTGACGTAATAATATACGATGGTGTCAGCAGCGAGGAAACCTTGAGAATCATGGGTGGAAGCAGTAAAGCAAGGTTGTATTTAAAATATATCCGCACATTGGCTGAGAAAACTGAAATTGGTAGATTGGCTGCTCCTTCACTCCTGAGACTTAAATTTGGTTGCCTCCTTGTGATGGATCCTAACAATCCAACCTCTGTCAATTCTGCATTACGTTATTGGGGGTGTGCAATTCAGGCTGGTGCTCAAGTTTCAGGCGCTTTTGGAATTTCCTCTCAGCAACCAAAACCAGAATCATTCCAAAGAGCAAAGAAAAATCTTTCTCCCTTGCCTTCTGCTTTCATCTCAAGTCCGTTAGTAAATAGCCCAATCGATTGGAACAAAGTTTTATTGGACACTGTGAATAAAGATGCTAGGCAATTTTTTACTTCACTATCAAGCCAATCCAGTAATATGACATCATCAGTTAAATTTGATGTCATAAGAAAATCAGTTACTCTCTTCATGCCAGGTTTTGACAAATCAGAGATTAAGCTATATCAATATAGGGGAGGATCTGAGCTTTTGGTAGAAGCCGGAGATCAAAGGCGTGTCATCCCTTTGCCTCAAGAAATTCAAGGAAAGGTTGGCGGAGCCAAATTCCAAGACAGAAGTCTTGTAATTACATTAAAATAA

Protein sequence

>Msa0807850

MGSISSFTFPVLCRSTSVRTKPLLAVSSSSSSSSSSSEDVASTKLLTFLGKGGSGKTTAAIFAAQHFAMAGLNTCLVIHSQDITADYLLNCKIGTSHVECSKNLSAVRLETTKMLLEPLKLLKQADAQLNMTQGTLGGIVGEELGILPGMDSIFSVLALERLVGFLGMGSSKSQQDKFDVIIYDGVSSEETLRIMGGSSKARLYLKYIRTLAEKTEIGRLAAPSLLRLKFGCLLVMDPNNPTSVNSALRYWGCAIQAGAQVSGAFGISSQQPKPESFQRAKKNLSPLPSAFISSPLVNSPIDWNKVLLDTVNKDARQFFTSLSSQSSNMTSSVKFDVIRKSVTLFMPGFDKSEIKLYQYRGGSELLVEAGDQRRVIPLPQEIQGKVGGAKFQDRSLVITLK*