Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0395780 | XP_003598421.1 | 96.654 | 269 | 9 | 0 | 1 | 269 | 1 | 269 | 0.0 | 517 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0395780 | sp|Q9FL44|MPH1_ARATH | 61.538 | 208 | 65 | 4 | 27 | 231 | 26 | 221 | 2.37e-80 | 244 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0395780 | G7IVT9 | 96.654 | 269 | 9 | 0 | 1 | 269 | 1 | 269 | 0.0 | 517 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002690 | Msa0395780 | 0.811616 | 6.404114e-51 | -8.615850e-47 |
| Msa0002700 | Msa0395780 | 0.803638 | 3.169059e-49 | -8.615850e-47 |
| Msa0007570 | Msa0395780 | 0.811453 | 6.948719e-51 | -8.615850e-47 |
| Msa0018010 | Msa0395780 | 0.817816 | 2.709913e-52 | -8.615850e-47 |
| Msa0022230 | Msa0395780 | 0.806204 | 9.215334e-50 | -8.615850e-47 |
| Msa0028940 | Msa0395780 | 0.808929 | 2.431881e-50 | -8.615850e-47 |
| Msa0029280 | Msa0395780 | 0.804490 | 2.107219e-49 | -8.615850e-47 |
| Msa0032990 | Msa0395780 | 0.825059 | 5.762055e-54 | -8.615850e-47 |
| Msa0038750 | Msa0395780 | 0.800984 | 1.115230e-48 | -8.615850e-47 |
| Msa0055530 | Msa0395780 | 0.817661 | 2.937634e-52 | -8.615850e-47 |
| Msa0058140 | Msa0395780 | 0.824544 | 7.619663e-54 | -8.615850e-47 |
| Msa0072910 | Msa0395780 | 0.809921 | 1.490040e-50 | -8.615850e-47 |
| Msa0079840 | Msa0395780 | 0.800250 | 1.573891e-48 | -8.615850e-47 |
| Msa0094990 | Msa0395780 | 0.822307 | 2.541319e-53 | -8.615850e-47 |
| Msa0116200 | Msa0395780 | 0.801402 | 9.158258e-49 | -8.615850e-47 |
| Msa0121080 | Msa0395780 | 0.829711 | 4.416903e-55 | -8.615850e-47 |
| Msa0124460 | Msa0395780 | 0.821788 | 3.351545e-53 | -8.615850e-47 |
| Msa0127110 | Msa0395780 | 0.820070 | 8.327350e-53 | -8.615850e-47 |
| Msa0160080 | Msa0395780 | 0.817712 | 2.860215e-52 | -8.615850e-47 |
| Msa0160120 | Msa0395780 | 0.802735 | 4.871417e-49 | -8.615850e-47 |
| Msa0168950 | Msa0395780 | 0.811243 | 7.716850e-51 | -8.615850e-47 |
| Msa0190840 | Msa0395780 | 0.819198 | 1.316958e-52 | -8.615850e-47 |
| Msa0195670 | Msa0395780 | 0.842366 | 2.702427e-58 | -8.615850e-47 |
| Msa0199160 | Msa0395780 | 0.803148 | 4.003037e-49 | -8.615850e-47 |
| Msa0203330 | Msa0395780 | 0.817035 | 4.063443e-52 | -8.615850e-47 |
| Msa0206600 | Msa0395780 | 0.808411 | 3.139096e-50 | -8.615850e-47 |
| Msa0220050 | Msa0395780 | 0.883567 | 4.023189e-71 | -8.615850e-47 |
| Msa0238530 | Msa0395780 | 0.802884 | 4.539348e-49 | -8.615850e-47 |
| Msa0365350 | Msa0395780 | 0.803447 | 3.471408e-49 | -8.615850e-47 |
| Msa0370690 | Msa0395780 | 0.803661 | 3.134052e-49 | -8.615850e-47 |
| Msa0373640 | Msa0395780 | 0.815726 | 7.975870e-52 | -8.615850e-47 |
| Msa0387630 | Msa0395780 | 0.809842 | 1.549315e-50 | -8.615850e-47 |
| Msa0395780 | Msa0398850 | 0.825527 | 4.464540e-54 | -8.615850e-47 |
| Msa0395780 | Msa0415210 | 0.802841 | 4.632751e-49 | -8.615850e-47 |
| Msa0395780 | Msa0416430 | 0.805435 | 1.336836e-49 | -8.615850e-47 |
| Msa0395780 | Msa0420280 | 0.803087 | 4.121565e-49 | -8.615850e-47 |
| Msa0395780 | Msa0425080 | 0.810815 | 9.554529e-51 | -8.615850e-47 |
| Msa0395780 | Msa0425150 | 0.809983 | 1.444657e-50 | -8.615850e-47 |
| Msa0395780 | Msa0438440 | 0.820243 | 7.602126e-53 | -8.615850e-47 |
| Msa0395780 | Msa0438990 | 0.804703 | 1.902395e-49 | -8.615850e-47 |
| Msa0395780 | Msa0443250 | 0.821030 | 5.014750e-53 | -8.615850e-47 |
| Msa0395780 | Msa0447810 | 0.833523 | 5.078231e-56 | -8.615850e-47 |
| Msa0395780 | Msa0459920 | 0.803761 | 2.988176e-49 | -8.615850e-47 |
| Msa0395780 | Msa0495510 | 0.815124 | 1.085710e-51 | -8.615850e-47 |
| Msa0395780 | Msa0508620 | 0.804395 | 2.205623e-49 | -8.615850e-47 |
| Msa0395780 | Msa0508660 | 0.801973 | 6.992329e-49 | -8.615850e-47 |
| Msa0395780 | Msa0508770 | 0.801623 | 8.250589e-49 | -8.615850e-47 |
| Msa0395780 | Msa0510410 | 0.831059 | 2.069229e-55 | -8.615850e-47 |
| Msa0395780 | Msa0516480 | 0.801080 | 1.066101e-48 | -8.615850e-47 |
| Msa0395780 | Msa0530250 | 0.849139 | 3.916554e-60 | -8.615850e-47 |
| Msa0395780 | Msa0553230 | 0.811938 | 5.449164e-51 | -8.615850e-47 |
| Msa0395780 | Msa0554170 | 0.800527 | 1.382111e-48 | -8.615850e-47 |
| Msa0395780 | Msa0559280 | 0.828154 | 1.052382e-54 | -8.615850e-47 |
| Msa0395780 | Msa0562680 | 0.804716 | 1.890103e-49 | -8.615850e-47 |
| Msa0395780 | Msa0562740 | 0.804528 | 2.068329e-49 | -8.615850e-47 |
| Msa0395780 | Msa0568120 | 0.844956 | 5.482987e-59 | -8.615850e-47 |
| Msa0395780 | Msa0568260 | 0.815042 | 1.132111e-51 | -8.615850e-47 |
| Msa0395780 | Msa0569930 | 0.800256 | 1.569717e-48 | -8.615850e-47 |
| Msa0395780 | Msa0570250 | 0.842549 | 2.416899e-58 | -8.615850e-47 |
| Msa0395780 | Msa0570310 | 0.848858 | 4.689277e-60 | -8.615850e-47 |
| Msa0395780 | Msa0570490 | 0.817402 | 3.359101e-52 | -8.615850e-47 |
| Msa0395780 | Msa0570770 | 0.821665 | 3.578207e-53 | -8.615850e-47 |
| Msa0395780 | Msa0572820 | 0.823333 | 1.465730e-53 | -8.615850e-47 |
| Msa0395780 | Msa0573970 | 0.810686 | 1.018906e-50 | -8.615850e-47 |
| Msa0395780 | Msa0585720 | 0.804034 | 2.622105e-49 | -8.615850e-47 |
| Msa0395780 | Msa0585810 | 0.802810 | 4.700426e-49 | -8.615850e-47 |
| Msa0395780 | Msa0587070 | 0.838818 | 2.293489e-57 | -8.615850e-47 |
| Msa0395780 | Msa0590260 | 0.804783 | 1.830075e-49 | -8.615850e-47 |
| Msa0395780 | Msa0616000 | 0.853012 | 3.165520e-61 | -8.615850e-47 |
| Msa0395780 | Msa0655360 | 0.856253 | 3.645301e-62 | -8.615850e-47 |
| Msa0395780 | Msa0657820 | 0.806292 | 8.830403e-50 | -8.615850e-47 |
| Msa0395780 | Msa0661540 | 0.812842 | 3.459622e-51 | -8.615850e-47 |
| Msa0395780 | Msa0663580 | 0.813740 | 2.196883e-51 | -8.615850e-47 |
| Msa0395780 | Msa0685810 | 0.807469 | 4.977834e-50 | -8.615850e-47 |
| Msa0395780 | Msa0687540 | 0.805587 | 1.242180e-49 | -8.615850e-47 |
| Msa0395780 | Msa0687620 | 0.816694 | 4.846659e-52 | -8.615850e-47 |
| Msa0395780 | Msa0697230 | 0.805840 | 1.099418e-49 | -8.615850e-47 |
| Msa0395780 | Msa0705710 | 0.800902 | 1.159018e-48 | -8.615850e-47 |
| Msa0395780 | Msa0717540 | 0.827856 | 1.241350e-54 | -8.615850e-47 |
| Msa0395780 | Msa0729060 | 0.846077 | 2.724099e-59 | -8.615850e-47 |
| Msa0395780 | Msa0738280 | 0.825497 | 4.538499e-54 | -8.615850e-47 |
| Msa0395780 | Msa0745270 | 0.817375 | 3.406656e-52 | -8.615850e-47 |
| Msa0395780 | Msa0750490 | 0.816504 | 5.344088e-52 | -8.615850e-47 |
| Msa0395780 | Msa0762480 | 0.809125 | 2.208670e-50 | -8.615850e-47 |
| Msa0395780 | Msa0766950 | 0.835362 | 1.754273e-56 | -8.615850e-47 |
| Msa0395780 | Msa0767040 | 0.844705 | 6.408522e-59 | -8.615850e-47 |
| Msa0395780 | Msa0772160 | 0.824044 | 9.987114e-54 | -8.615850e-47 |
| Msa0395780 | Msa0776290 | 0.823152 | 1.615427e-53 | -8.615850e-47 |
| Msa0395780 | Msa0785670 | 0.812441 | 4.232689e-51 | -8.615850e-47 |
| Msa0395780 | Msa0786330 | 0.838307 | 3.107384e-57 | -8.615850e-47 |
| Msa0395780 | Msa0794300 | 0.805866 | 1.085239e-49 | -8.615850e-47 |
| Msa0395780 | Msa0807850 | 0.810965 | 8.865712e-51 | -8.615850e-47 |
| Msa0395780 | Msa0807950 | 0.801561 | 8.494952e-49 | -8.615850e-47 |
| Msa0395780 | Msa0817810 | 0.828311 | 9.647072e-55 | -8.615850e-47 |
| Msa0395780 | Msa0822800 | 0.806191 | 9.271593e-50 | -8.615850e-47 |
| Msa0395780 | Msa0840450 | 0.801194 | 1.010381e-48 | -8.615850e-47 |
| Msa0395780 | Msa0840630 | 0.813633 | 2.319177e-51 | -8.615850e-47 |
| Msa0395780 | Msa0842370 | 0.806962 | 6.376994e-50 | -8.615850e-47 |
| Msa0395780 | Msa0846070 | 0.832588 | 8.675341e-56 | -8.615850e-47 |
| Msa0395780 | Msa0848720 | 0.806616 | 7.545245e-50 | -8.615850e-47 |
| Msa0395780 | Msa0899080 | 0.812383 | 4.359112e-51 | -8.615850e-47 |
| Msa0395780 | Msa0925630 | 0.804146 | 2.484280e-49 | -8.615850e-47 |
| Msa0395780 | Msa0928060 | 0.805664 | 1.196707e-49 | -8.615850e-47 |
| Msa0395780 | Msa0947550 | 0.802360 | 5.820243e-49 | -8.615850e-47 |
| Msa0395780 | Msa0959710 | 0.809785 | 1.593737e-50 | -8.615850e-47 |
| Msa0395780 | Msa0964570 | 0.828731 | 7.639398e-55 | -8.615850e-47 |
| Msa0395780 | Msa0968970 | 0.808815 | 2.573042e-50 | -8.615850e-47 |
| Msa0395780 | Msa0998660 | 0.810983 | 8.786317e-51 | -8.615850e-47 |
| Msa0395780 | Msa1032760 | 0.803674 | 3.115171e-49 | -8.615850e-47 |
| Msa0395780 | Msa1038040 | 0.831374 | 1.731294e-55 | -8.615850e-47 |
| Msa0395780 | Msa1040030 | 0.823438 | 1.385415e-53 | -8.615850e-47 |
| Msa0395780 | Msa1044050 | 0.803052 | 4.190756e-49 | -8.615850e-47 |
| Msa0395780 | Msa1052600 | 0.820812 | 5.629455e-53 | -8.615850e-47 |
| Msa0395780 | Msa1068410 | 0.811371 | 7.239074e-51 | -8.615850e-47 |
| Msa0395780 | Msa1121410 | 0.800581 | 1.347410e-48 | -8.615850e-47 |
| Msa0395780 | Msa1121580 | 0.835866 | 1.307243e-56 | -8.615850e-47 |
| Msa0395780 | Msa1130910 | 0.803005 | 4.285548e-49 | -8.615850e-47 |
| Msa0395780 | Msa1158540 | 0.807482 | 4.946324e-50 | -8.615850e-47 |
| Msa0395780 | Msa1161520 | 0.838464 | 2.831121e-57 | -8.615850e-47 |
| Msa0395780 | Msa1171640 | 0.829935 | 3.897339e-55 | -8.615850e-47 |
| Msa0395780 | Msa1215790 | 0.811371 | 7.240991e-51 | -8.615850e-47 |
| Msa0395780 | Msa1258200 | 0.808140 | 3.584822e-50 | -8.615850e-47 |
| Msa0395780 | Msa1295220 | 0.804677 | 1.925507e-49 | -8.615850e-47 |
| Msa0395780 | Msa1296930 | 0.800159 | 1.642192e-48 | -8.615850e-47 |
| Msa0395780 | Msa1308010 | 0.814581 | 1.432200e-51 | -8.615850e-47 |
| Msa0395780 | Msa1308460 | 0.806273 | 8.912892e-50 | -8.615850e-47 |
| Msa0395780 | Msa1317090 | 0.802311 | 5.957400e-49 | -8.615850e-47 |
| Msa0395780 | Msa1338600 | 0.814454 | 1.527848e-51 | -8.615850e-47 |
| Msa0395780 | Msa1345120 | 0.833493 | 5.166095e-56 | -8.615850e-47 |
| Msa0395780 | Msa1348230 | 0.803144 | 4.010732e-49 | -8.615850e-47 |
| Msa0395780 | Msa1348630 | 0.805538 | 1.272040e-49 | -8.615850e-47 |
| Msa0395780 | Msa1368150 | 0.806462 | 8.132434e-50 | -8.615850e-47 |
| Msa0395780 | Msa1373570 | 0.803875 | 2.829574e-49 | -8.615850e-47 |
| Msa0395780 | Msa1376510 | 0.801747 | 7.781545e-49 | -8.615850e-47 |
| Msa0395780 | Msa1425510 | 0.809363 | 1.963193e-50 | -8.615850e-47 |
| Msa0395780 | Msa1429180 | 0.812627 | 3.853852e-51 | -8.615850e-47 |
| Msa0395780 | Msa1430630 | 0.806531 | 7.862777e-50 | -8.615850e-47 |
| Msa0395780 | Msa1459680 | 0.800736 | 1.252863e-48 | -8.615850e-47 |
| Msa0239610 | Msa0395780 | 0.811836 | 5.734615e-51 | -8.615850e-47 |
| Msa0246470 | Msa0395780 | 0.815514 | 8.890632e-52 | -8.615850e-47 |
| Msa0290590 | Msa0395780 | 0.815679 | 8.171529e-52 | -8.615850e-47 |
| Msa0292060 | Msa0395780 | 0.815276 | 1.004283e-51 | -8.615850e-47 |
| Msa0297860 | Msa0395780 | 0.805974 | 1.030211e-49 | -8.615850e-47 |
| Msa0313550 | Msa0395780 | 0.803808 | 2.921692e-49 | -8.615850e-47 |
| Msa0323790 | Msa0395780 | 0.811270 | 7.613635e-51 | -8.615850e-47 |
| Msa0330240 | Msa0395780 | 0.823992 | 1.027523e-53 | -8.615850e-47 |
| Msa0348760 | Msa0395780 | 0.810218 | 1.285725e-50 | -8.615850e-47 |
| Msa0358720 | Msa0395780 | 0.825001 | 5.948098e-54 | -8.615850e-47 |
| Msa0358750 | Msa0395780 | 0.806586 | 7.656915e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0395780 | MtrunA17_Chr3g0081651 | 96.654 | 269 | 9 | 0 | 1 | 269 | 1 | 269 | 0.0 | 517 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0395780 | AT5G07020.1 | 61.538 | 208 | 65 | 4 | 27 | 231 | 26 | 221 | 2.41e-81 | 244 |
Find 84 sgRNAs with CRISPR-Local
Find 208 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGATTCCAATTATAGGATTT+TGG | 0.200860 | 3_2:-12865929 | None:intergenic |
| TGATGGAGAAAGAAGGTTTA+TGG | 0.216940 | 3_2:-12865897 | None:intergenic |
| CTGACATAATATTTCAAATA+TGG | 0.228999 | 3_2:-12868974 | None:intergenic |
| AAATATGAACACACTTAATT+TGG | 0.239246 | 3_2:-12868860 | None:intergenic |
| CATTCATTTGTTAACAATAA+TGG | 0.245200 | 3_2:+12866023 | Msa0395780:exon |
| CCAAACCAAAATCCTATAAT+TGG | 0.249655 | 3_2:+12865924 | Msa0395780:five_prime_UTR |
| CAAACATGTTGTAATGTAAC+TGG | 0.267850 | 3_2:-12869092 | None:intergenic |
| ACTTCCGCAGGAGAGCTTTC+AGG | 0.335751 | 3_2:-12868661 | None:intergenic |
| AATGAACTAACTTCCTTGTC+AGG | 0.341008 | 3_2:-12866198 | None:intergenic |
| GCTTATGTATACAAGGTTAA+TGG | 0.352128 | 3_2:+12868819 | Msa0395780:three_prime_UTR |
| GGCACATGTGTTGGTTGTTA+TGG | 0.357906 | 3_2:-12866064 | None:intergenic |
| CAGCCGGTTGAATTGTGAAT+TGG | 0.366130 | 3_2:+12869046 | Msa0395780:three_prime_UTR |
| GTAGGTTGGGAAGGTGAGTA+TGG | 0.374281 | 3_2:+12867335 | Msa0395780:intron |
| GGAGAATTTCCTTGTTGAAA+AGG | 0.378718 | 3_2:-12866085 | None:intergenic |
| CTCAGCGGGCACGATGCTCT+CGG | 0.378773 | 3_2:-12868575 | None:intergenic |
| TGTTTGAACTGGAATTGAAT+TGG | 0.395275 | 3_2:+12869109 | Msa0395780:three_prime_UTR |
| GAATTGGCCCGTTCGTTAGT+TGG | 0.409478 | 3_2:+12869062 | Msa0395780:three_prime_UTR |
| ACATTACAACATGTTTGAAC+TGG | 0.415388 | 3_2:+12869098 | Msa0395780:three_prime_UTR |
| TTAAAGAATGTTTCAAAAGC+CGG | 0.440282 | 3_2:+12869008 | Msa0395780:three_prime_UTR |
| TGAATATATATTTGTCTGTC+CGG | 0.442763 | 3_2:-12867448 | None:intergenic |
| GCAGAAAGTGCTATAAGTTC+AGG | 0.456072 | 3_2:+12868259 | Msa0395780:CDS |
| GCTATAAGTTCAGGAACATC+TGG | 0.456974 | 3_2:+12868268 | Msa0395780:CDS |
| GTTTGAACTGGAATTGAATT+GGG | 0.457676 | 3_2:+12869110 | Msa0395780:three_prime_UTR |
| CAGAACACAGCAGCAATTGC+TGG | 0.464297 | 3_2:+12868310 | Msa0395780:CDS |
| GATTAAACCAACTAACGAAC+GGG | 0.472988 | 3_2:-12869069 | None:intergenic |
| AGGTTAAGATGGGTGGTTTG+TGG | 0.477461 | 3_2:-12865863 | None:intergenic |
| CGTCGTAAGCAGGGTTGGAC+AGG | 0.487965 | 3_2:+12867405 | Msa0395780:CDS |
| ATATCCACCACGTCGTAAGC+AGG | 0.491350 | 3_2:+12867395 | Msa0395780:CDS |
| TCAGCGGGCACGATGCTCTC+GGG | 0.493326 | 3_2:-12868574 | None:intergenic |
| GGGCCAATTCACAATTCAAC+CGG | 0.493650 | 3_2:-12869049 | None:intergenic |
| GGCATCATCAATACTTCTAC+AGG | 0.502782 | 3_2:+12868360 | Msa0395780:CDS |
| ATAGCAGTGAACACAACTAA+TGG | 0.503991 | 3_2:+12868902 | Msa0395780:three_prime_UTR |
| TGGTAAGAATTCTCCACCTC+AGG | 0.508886 | 3_2:+12868384 | Msa0395780:CDS |
| TTGGACAGGCTATGTTGAAA+AGG | 0.509725 | 3_2:+12867419 | Msa0395780:CDS |
| TTTCCAGCCAGCAGTTTATG+TGG | 0.517990 | 3_2:+12868237 | Msa0395780:intron |
| ACATCTGGTTCTTCTTCTGA+TGG | 0.519250 | 3_2:+12868283 | Msa0395780:CDS |
| AACCGGCTGAACTGCCTACT+CGG | 0.519635 | 3_2:-12869032 | None:intergenic |
| GAGGAGAAGACAAAAGTAGT+AGG | 0.520284 | 3_2:+12867369 | Msa0395780:CDS |
| AATATTATGTCAGATTTCAA+AGG | 0.530230 | 3_2:+12868984 | Msa0395780:three_prime_UTR |
| ATGAACTAACTTCCTTGTCA+GGG | 0.532560 | 3_2:-12866197 | None:intergenic |
| TTTGTGTGTGAAGGTTAAGA+TGG | 0.534300 | 3_2:-12865874 | None:intergenic |
| TGTGTGAAGGTTAAGATGGG+TGG | 0.542845 | 3_2:-12865870 | None:intergenic |
| GTAGGCACATCACTCTCTGT+TGG | 0.543592 | 3_2:-12868523 | None:intergenic |
| GCTGAACTGCCTACTCGGTC+CGG | 0.544520 | 3_2:-12869027 | None:intergenic |
| GTAGTAACTAAGTGATGGCC+CGG | 0.545619 | 3_2:-12868425 | None:intergenic |
| CACCACGTCGTAAGCAGGGT+TGG | 0.545868 | 3_2:+12867400 | Msa0395780:CDS |
| TTGTGTGTGAAGGTTAAGAT+GGG | 0.546075 | 3_2:-12865873 | None:intergenic |
| CTTTCTGCCACATAAACTGC+TGG | 0.548485 | 3_2:-12868244 | None:intergenic |
| GATGATAGTTCTGTCTCAGC+GGG | 0.569902 | 3_2:-12868589 | None:intergenic |
| GACCGAGTAGGCAGTTCAGC+CGG | 0.575661 | 3_2:+12869030 | Msa0395780:three_prime_UTR |
| GGATTAAACCAACTAACGAA+CGG | 0.578086 | 3_2:-12869070 | None:intergenic |
| GATGGTGATGTAGGTTGGGA+AGG | 0.583948 | 3_2:+12867326 | Msa0395780:intron |
| GAGTATGGAATGGTTAGCAG+AGG | 0.584567 | 3_2:+12867350 | Msa0395780:CDS |
| GGTTTATGGTTTGTGTGTGA+AGG | 0.587454 | 3_2:-12865883 | None:intergenic |
| GATGATAGTTCTGTCTGAGT+AGG | 0.588370 | 3_2:-12868541 | None:intergenic |
| AGATACAGTGTCCACACTTG+AGG | 0.588380 | 3_2:-12868722 | None:intergenic |
| ATGTATACAAGGTTAATGGA+TGG | 0.589265 | 3_2:+12868823 | Msa0395780:three_prime_UTR |
| TGTTGAAAAGGCACATGTGT+TGG | 0.590593 | 3_2:-12866073 | None:intergenic |
| TATGTTGAAAAGGATACTGC+CGG | 0.597754 | 3_2:+12867429 | Msa0395780:CDS |
| TCATCAATACTTCTACAGGT+TGG | 0.599103 | 3_2:+12868364 | Msa0395780:CDS |
| TTTCAAAAGCCGGACCGAGT+AGG | 0.600234 | 3_2:+12869018 | Msa0395780:three_prime_UTR |
| AATATGAGCTTATGTATACA+AGG | 0.601253 | 3_2:+12868812 | Msa0395780:three_prime_UTR |
| TGGAACAGATATCGATGCAT+CGG | 0.615005 | 3_2:-12868638 | None:intergenic |
| GACAAATATATATTCAGTCG+AGG | 0.616952 | 3_2:+12867455 | Msa0395780:CDS |
| TCCGCAGGAGAGCTTTCAGG+TGG | 0.616963 | 3_2:-12868658 | None:intergenic |
| TTGGGAAGGTGAGTATGGAA+TGG | 0.617296 | 3_2:+12867340 | Msa0395780:CDS |
| TTGATGTAGTAACTAAGTGA+TGG | 0.619070 | 3_2:-12868430 | None:intergenic |
| AAACATGTTGTAATGTAACT+GGG | 0.620793 | 3_2:-12869091 | None:intergenic |
| AGTGGAATCTCAAATTCAGA+CGG | 0.624255 | 3_2:+12868696 | Msa0395780:CDS |
| TGAAGAATGTGCCCCTGACA+AGG | 0.625503 | 3_2:+12866185 | Msa0395780:CDS |
| GTCCAACCCTGCTTACGACG+TGG | 0.625515 | 3_2:-12867402 | None:intergenic |
| TGAACTTGAGAAACTTCCGC+AGG | 0.634681 | 3_2:-12868673 | None:intergenic |
| TATCCACCACGTCGTAAGCA+GGG | 0.636876 | 3_2:+12867396 | Msa0395780:CDS |
| TCTGTCTCAGTAGACACAGA+GGG | 0.638624 | 3_2:-12868484 | None:intergenic |
| GGAAGTTTCTCAAGTTCAAG+TGG | 0.646623 | 3_2:+12868678 | Msa0395780:CDS |
| TGCACTGATCTCAATTGCCG+CGG | 0.650728 | 3_2:+12868339 | Msa0395780:CDS |
| TGAACTAACTTCCTTGTCAG+GGG | 0.651885 | 3_2:-12866196 | None:intergenic |
| CAACCCTGCTTACGACGTGG+TGG | 0.656386 | 3_2:-12867399 | None:intergenic |
| TAGAAGTATTGATGATGCCG+CGG | 0.657463 | 3_2:-12868356 | None:intergenic |
| TCCACCTGAAAGCTCTCCTG+CGG | 0.657606 | 3_2:+12868657 | Msa0395780:CDS |
| AACACAGCAGCAATTGCTGG+TGG | 0.671200 | 3_2:+12868313 | Msa0395780:CDS |
| TCAGACGGAGACCTCAAGTG+TGG | 0.674301 | 3_2:+12868711 | Msa0395780:CDS |
| TGATGATAGTTCTGTCTCAG+CGG | 0.699913 | 3_2:-12868590 | None:intergenic |
| CTCTGTCTCAGTAGACACAG+AGG | 0.722923 | 3_2:-12868485 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTGTTTTTGTTATTTTTT+TGG | + | chr3_2:12866477-12866496 | Msa0395780:intron | 10.0% |
| !!! | TAGAATTTTTTCTATTATTA+AGG | + | chr3_2:12867479-12867498 | Msa0395780:intron | 10.0% |
| !! | AAGAAAAAGATTCCAATTAT+AGG | - | chr3_2:12865939-12865958 | None:intergenic | 20.0% |
| !!! | CATTCATTTGTTAACAATAA+TGG | + | chr3_2:12866023-12866042 | Msa0395780:exon | 20.0% |
| !! | GCATACAATTAACTAATAAA+TGG | - | chr3_2:12866236-12866255 | None:intergenic | 20.0% |
| !! | CATCTAATCAAATTATACAA+AGG | - | chr3_2:12866447-12866466 | None:intergenic | 20.0% |
| !!! | AAATTTTTTAGGTAACAGAT+AGG | - | chr3_2:12866694-12866713 | None:intergenic | 20.0% |
| !! | CTGTTACCTAAAAAATTTAA+AGG | + | chr3_2:12866696-12866715 | Msa0395780:intron | 20.0% |
| !!! | ATAGGTCCTTTAAATTTTTT+AGG | - | chr3_2:12866705-12866724 | None:intergenic | 20.0% |
| !! | AGTTTAGAAATTACTGAATT+AGG | + | chr3_2:12866984-12867003 | Msa0395780:intron | 20.0% |
| !!! | TAGAATTATATAGTCTTAGA+AGG | + | chr3_2:12867044-12867063 | Msa0395780:intron | 20.0% |
| !! | TACATATCAATTTGAGTATT+TGG | + | chr3_2:12867664-12867683 | Msa0395780:intron | 20.0% |
| !! | TTACATGTGATATTTATGTA+AGG | - | chr3_2:12867829-12867848 | None:intergenic | 20.0% |
| !! | GTAATGTAATACAAAAATCA+CGG | + | chr3_2:12867845-12867864 | Msa0395780:intron | 20.0% |
| !! | AAATATGAACACACTTAATT+TGG | - | chr3_2:12868863-12868882 | None:intergenic | 20.0% |
| !! | CTGACATAATATTTCAAATA+TGG | - | chr3_2:12868977-12868996 | None:intergenic | 20.0% |
| !! | AATATTATGTCAGATTTCAA+AGG | + | chr3_2:12868984-12869003 | Msa0395780:three_prime_UTR | 20.0% |
| !! | AGATTCCAATTATAGGATTT+TGG | - | chr3_2:12865932-12865951 | None:intergenic | 25.0% |
| !!! | ACTTGTTTTACACTTTTACT+TGG | + | chr3_2:12866265-12866284 | Msa0395780:intron | 25.0% |
| !! | TACAACAATATGTTTTGCTT+TGG | - | chr3_2:12866347-12866366 | None:intergenic | 25.0% |
| !!! | ATAGGTCCTTTAAGTTTTTT+AGG | + | chr3_2:12866543-12866562 | Msa0395780:intron | 25.0% |
| ! | CTGTTACCTAAAAAACTTAA+AGG | - | chr3_2:12866552-12866571 | None:intergenic | 25.0% |
| !!! | AAGTTTTTTAGGTAACAGAT+AGG | + | chr3_2:12866554-12866573 | Msa0395780:intron | 25.0% |
| ! | GAAACAAACTTGAAACTTAA+AGG | - | chr3_2:12866610-12866629 | None:intergenic | 25.0% |
| !!! | AAGTTTCTAAAGTTTCAGAT+AGG | - | chr3_2:12866665-12866684 | None:intergenic | 25.0% |
| !! | CTGAAACTTTAGAAACTTAA+AGG | + | chr3_2:12866667-12866686 | Msa0395780:intron | 25.0% |
| ! | GTTACAAACATGAAACTTAA+AGG | + | chr3_2:12866727-12866746 | Msa0395780:intron | 25.0% |
| ! | TAGAGCGATATGAAAAAAAT+AGG | - | chr3_2:12866771-12866790 | None:intergenic | 25.0% |
| ! | ACAAACTTCTTTATATTGTG+TGG | + | chr3_2:12866823-12866842 | Msa0395780:intron | 25.0% |
| !! | TCACAATATAAAGGATTTTG+AGG | - | chr3_2:12866894-12866913 | None:intergenic | 25.0% |
| ! | ACATAAAATGGTTCGATAAT+TGG | - | chr3_2:12867250-12867269 | None:intergenic | 25.0% |
| ! | TTCATCTTGATTAGAAATTC+GGG | - | chr3_2:12867277-12867296 | None:intergenic | 25.0% |
| ! | GTTCATCTTGATTAGAAATT+CGG | - | chr3_2:12867278-12867297 | None:intergenic | 25.0% |
| ! | TTCTAATCAAGATGAACAAA+AGG | + | chr3_2:12867281-12867300 | Msa0395780:intron | 25.0% |
| ! | TGAATATATATTTGTCTGTC+CGG | - | chr3_2:12867451-12867470 | None:intergenic | 25.0% |
| ! | TAATACAAAAATCACGGTTT+GGG | + | chr3_2:12867851-12867870 | Msa0395780:intron | 25.0% |
| ! | TTAAATAAGTCAATCCAAAC+AGG | + | chr3_2:12868088-12868107 | Msa0395780:intron | 25.0% |
| ! | ATTTAAGGACTAGATTCTTA+AGG | - | chr3_2:12868172-12868191 | None:intergenic | 25.0% |
| !! | TCTAGTCCTTAAATTTTCTA+TGG | + | chr3_2:12868178-12868197 | Msa0395780:intron | 25.0% |
| ! | AATATGAGCTTATGTATACA+AGG | + | chr3_2:12868812-12868831 | Msa0395780:three_prime_UTR | 25.0% |
| ! | TTAAAGAATGTTTCAAAAGC+CGG | + | chr3_2:12869008-12869027 | Msa0395780:three_prime_UTR | 25.0% |
| ! | AAACATGTTGTAATGTAACT+GGG | - | chr3_2:12869094-12869113 | None:intergenic | 25.0% |
| !!! | GATTTTGGTTTGGTTTTTGA+TGG | - | chr3_2:12865917-12865936 | None:intergenic | 30.0% |
| !!! | CCAATTATAGGATTTTGGTT+TGG | - | chr3_2:12865927-12865946 | None:intergenic | 30.0% |
| CCAAACCAAAATCCTATAAT+TGG | + | chr3_2:12865924-12865943 | Msa0395780:five_prime_UTR | 30.0% | |
| !! | GTTAATCTTTTGTTGCTTCA+AGG | - | chr3_2:12866109-12866128 | None:intergenic | 30.0% |
| ! | TTTTACTTGGTATGTTTGTC+TGG | + | chr3_2:12866278-12866297 | Msa0395780:intron | 30.0% |
| TGAGAAAACTAAGGAAAACT+AGG | + | chr3_2:12866305-12866324 | Msa0395780:intron | 30.0% | |
| TGTTATGCTTTGCTTACAAA+GGG | + | chr3_2:12866398-12866417 | Msa0395780:intron | 30.0% | |
| !!! | GTGCTTGTTTATATTGGTTT+TGG | + | chr3_2:12866420-12866439 | Msa0395780:intron | 30.0% |
| GTTACAAACGTGAAACTTAA+AGG | - | chr3_2:12866521-12866540 | None:intergenic | 30.0% | |
| ! | ATAGGTCCTTTAAGTTTCTA+AGG | + | chr3_2:12866572-12866591 | Msa0395780:intron | 30.0% |
| CTGAAACCTTAGAAACTTAA+AGG | - | chr3_2:12866581-12866600 | None:intergenic | 30.0% | |
| !! | AAGTTTCTAAGGTTTCAGAT+AGG | + | chr3_2:12866583-12866602 | Msa0395780:intron | 30.0% |
| !! | GTTTCAAGTTTGTTTCAGAT+AGG | + | chr3_2:12866614-12866633 | Msa0395780:intron | 30.0% |
| GTTTCATGTTTGTAACAGAT+AGG | - | chr3_2:12866723-12866742 | None:intergenic | 30.0% | |
| !!! | ATGGTTTTAGATTGTAGTTG+TGG | + | chr3_2:12866793-12866812 | Msa0395780:intron | 30.0% |
| ! | TATAGTCTTAGAAGGATAGT+TGG | + | chr3_2:12867052-12867071 | Msa0395780:intron | 30.0% |
| !! | GTAGAAAGTTCATTTGTTGT+CGG | + | chr3_2:12867107-12867126 | Msa0395780:intron | 30.0% |
| !! | AATTCGGGTTGTACATAAAA+TGG | - | chr3_2:12867262-12867281 | None:intergenic | 30.0% |
| GACAAATATATATTCAGTCG+AGG | + | chr3_2:12867455-12867474 | Msa0395780:CDS | 30.0% | |
| CACACATACATAAAGATCAA+AGG | - | chr3_2:12867539-12867558 | None:intergenic | 30.0% | |
| ACATGCTCAACAAAATCAAA+GGG | - | chr3_2:12867569-12867588 | None:intergenic | 30.0% | |
| AACATGCTCAACAAAATCAA+AGG | - | chr3_2:12867570-12867589 | None:intergenic | 30.0% | |
| TCAATTTGAGTATTTGGTTG+AGG | + | chr3_2:12867670-12867689 | Msa0395780:intron | 30.0% | |
| AGTATTTGGTTGAGGAAAAA+TGG | + | chr3_2:12867678-12867697 | Msa0395780:intron | 30.0% | |
| ACTCAGCAGAAAAAAATTTC+CGG | + | chr3_2:12867710-12867729 | Msa0395780:intron | 30.0% | |
| GTAATACAAAAATCACGGTT+TGG | + | chr3_2:12867850-12867869 | Msa0395780:intron | 30.0% | |
| !!! | GTTGTTTTTGTAAGCTATCT+TGG | + | chr3_2:12867961-12867980 | Msa0395780:intron | 30.0% |
| TTGATGTAGTAACTAAGTGA+TGG | - | chr3_2:12868433-12868452 | None:intergenic | 30.0% | |
| !!! | CCATGCTTTTAAAGTAAAAG+TGG | - | chr3_2:12868768-12868787 | None:intergenic | 30.0% |
| !! | CCACTTTTACTTTAAAAGCA+TGG | + | chr3_2:12868765-12868784 | Msa0395780:three_prime_UTR | 30.0% |
| GCTTATGTATACAAGGTTAA+TGG | + | chr3_2:12868819-12868838 | Msa0395780:three_prime_UTR | 30.0% | |
| ATGTATACAAGGTTAATGGA+TGG | + | chr3_2:12868823-12868842 | Msa0395780:three_prime_UTR | 30.0% | |
| ! | AGTGTGTTCATATTTTGCTA+AGG | + | chr3_2:12868868-12868887 | Msa0395780:three_prime_UTR | 30.0% |
| CAAACATGTTGTAATGTAAC+TGG | - | chr3_2:12869095-12869114 | None:intergenic | 30.0% | |
| ACATTACAACATGTTTGAAC+TGG | + | chr3_2:12869098-12869117 | Msa0395780:three_prime_UTR | 30.0% | |
| TGTTTGAACTGGAATTGAAT+TGG | + | chr3_2:12869109-12869128 | Msa0395780:three_prime_UTR | 30.0% | |
| GTTTGAACTGGAATTGAATT+GGG | + | chr3_2:12869110-12869129 | Msa0395780:three_prime_UTR | 30.0% | |
| TTGTGTGTGAAGGTTAAGAT+GGG | - | chr3_2:12865876-12865895 | None:intergenic | 35.0% | |
| TTTGTGTGTGAAGGTTAAGA+TGG | - | chr3_2:12865877-12865896 | None:intergenic | 35.0% | |
| TGATGGAGAAAGAAGGTTTA+TGG | - | chr3_2:12865900-12865919 | None:intergenic | 35.0% | |
| ! | TGGTTTTTGATGGAGAAAGA+AGG | - | chr3_2:12865907-12865926 | None:intergenic | 35.0% |
| GGAGAATTTCCTTGTTGAAA+AGG | - | chr3_2:12866088-12866107 | None:intergenic | 35.0% | |
| ATGAACTAACTTCCTTGTCA+GGG | - | chr3_2:12866200-12866219 | None:intergenic | 35.0% | |
| AATGAACTAACTTCCTTGTC+AGG | - | chr3_2:12866201-12866220 | None:intergenic | 35.0% | |
| TCTGGTAGTTGAGAAAACTA+AGG | + | chr3_2:12866296-12866315 | Msa0395780:intron | 35.0% | |
| CTGTTATGCTTTGCTTACAA+AGG | + | chr3_2:12866397-12866416 | Msa0395780:intron | 35.0% | |
| !! | CAAAGGGTGCTTGTTTATAT+TGG | + | chr3_2:12866414-12866433 | Msa0395780:intron | 35.0% |
| GTTTCACGTTTGTAACAGAT+AGG | + | chr3_2:12866525-12866544 | Msa0395780:intron | 35.0% | |
| !! | CCTTAACAGAGTTGATATGA+AGG | - | chr3_2:12866641-12866660 | None:intergenic | 35.0% |
| CCTTCATATCAACTCTGTTA+AGG | + | chr3_2:12866638-12866657 | Msa0395780:intron | 35.0% | |
| ! | TTTTTCATATCGCTCTAGCA+TGG | + | chr3_2:12866774-12866793 | Msa0395780:intron | 35.0% |
| TGGAAACACAGTCAAAATTG+TGG | + | chr3_2:12866843-12866862 | Msa0395780:intron | 35.0% | |
| CGAATGCAGTCACAATATAA+AGG | - | chr3_2:12866903-12866922 | None:intergenic | 35.0% | |
| TATGTTGAAAAGGATACTGC+CGG | + | chr3_2:12867429-12867448 | Msa0395780:CDS | 35.0% | |
| ATTTGGTTGAGGAAAAATGG+AGG | + | chr3_2:12867681-12867700 | Msa0395780:intron | 35.0% | |
| ATGGGAGCAAAAATTGAATC+CGG | - | chr3_2:12867732-12867751 | None:intergenic | 35.0% | |
| AGTATAACCACTTGTGAAAC+TGG | - | chr3_2:12868057-12868076 | None:intergenic | 35.0% | |
| CGAACGCCATAGAAAATTTA+AGG | - | chr3_2:12868187-12868206 | None:intergenic | 35.0% | |
| TCATCAATACTTCTACAGGT+TGG | + | chr3_2:12868364-12868383 | Msa0395780:CDS | 35.0% | |
| AGTGGAATCTCAAATTCAGA+CGG | + | chr3_2:12868696-12868715 | Msa0395780:CDS | 35.0% | |
| ATAGCAGTGAACACAACTAA+TGG | + | chr3_2:12868902-12868921 | Msa0395780:three_prime_UTR | 35.0% | |
| GATTAAACCAACTAACGAAC+GGG | - | chr3_2:12869072-12869091 | None:intergenic | 35.0% | |
| GGATTAAACCAACTAACGAA+CGG | - | chr3_2:12869073-12869092 | None:intergenic | 35.0% | |
| ! | GGTTTATGGTTTGTGTGTGA+AGG | - | chr3_2:12865886-12865905 | None:intergenic | 40.0% |
| ! | TGTTGAAAAGGCACATGTGT+TGG | - | chr3_2:12866076-12866095 | None:intergenic | 40.0% |
| ! | ACACATGTGCCTTTTCAACA+AGG | + | chr3_2:12866076-12866095 | Msa0395780:CDS | 40.0% |
| TGAACTAACTTCCTTGTCAG+GGG | - | chr3_2:12866199-12866218 | None:intergenic | 40.0% | |
| AGCAAAGCATAACAGCTACT+TGG | - | chr3_2:12866392-12866411 | None:intergenic | 40.0% | |
| ACATGAAACTTAAAGGACCC+AGG | + | chr3_2:12866734-12866753 | Msa0395780:intron | 40.0% | |
| CATGAAACTTAAAGGACCCA+GGG | + | chr3_2:12866735-12866754 | Msa0395780:intron | 40.0% | |
| CGGACTGCAATTTATAACCA+TGG | + | chr3_2:12866929-12866948 | Msa0395780:intron | 40.0% | |
| AGACCTATTCAGCGATATCA+CGG | + | chr3_2:12867079-12867098 | Msa0395780:intron | 40.0% | |
| TTTCCGTGATATCGCTGAAT+AGG | - | chr3_2:12867085-12867104 | None:intergenic | 40.0% | |
| AGAAGCTAATCCTCTGTTGA+TGG | + | chr3_2:12867308-12867327 | Msa0395780:intron | 40.0% | |
| !! | TGTTGATGGTGATGTAGGTT+GGG | + | chr3_2:12867322-12867341 | Msa0395780:intron | 40.0% |
| GAGGAGAAGACAAAAGTAGT+AGG | + | chr3_2:12867369-12867388 | Msa0395780:CDS | 40.0% | |
| TTGGACAGGCTATGTTGAAA+AGG | + | chr3_2:12867419-12867438 | Msa0395780:CDS | 40.0% | |
| ! | ATTTTTGCTCCCATCGAATG+TGG | + | chr3_2:12867738-12867757 | Msa0395780:intron | 40.0% |
| ! | TTTTTGCTCCCATCGAATGT+GGG | + | chr3_2:12867739-12867758 | Msa0395780:intron | 40.0% |
| TTGTAAGCTATCTTGGTCCT+TGG | + | chr3_2:12867968-12867987 | Msa0395780:intron | 40.0% | |
| ACTTGTGAAACTGGTTGAGA+GGG | - | chr3_2:12868048-12868067 | None:intergenic | 40.0% | |
| !! | GCAGAAAGTGCTATAAGTTC+AGG | + | chr3_2:12868259-12868278 | Msa0395780:CDS | 40.0% |
| GCTATAAGTTCAGGAACATC+TGG | + | chr3_2:12868268-12868287 | Msa0395780:CDS | 40.0% | |
| !! | ACATCTGGTTCTTCTTCTGA+TGG | + | chr3_2:12868283-12868302 | Msa0395780:CDS | 40.0% |
| !! | TAGAAGTATTGATGATGCCG+CGG | - | chr3_2:12868359-12868378 | None:intergenic | 40.0% |
| GGCATCATCAATACTTCTAC+AGG | + | chr3_2:12868360-12868379 | Msa0395780:CDS | 40.0% | |
| ! | TATTCGACTTTTTGGACCTG+AGG | - | chr3_2:12868403-12868422 | None:intergenic | 40.0% |
| GTCCAAAAAGTCGAATACTC+CGG | + | chr3_2:12868406-12868425 | Msa0395780:CDS | 40.0% | |
| TCCAAAAAGTCGAATACTCC+GGG | + | chr3_2:12868407-12868426 | Msa0395780:CDS | 40.0% | |
| ! | GATGATAGTTCTGTCTGAGT+AGG | - | chr3_2:12868544-12868563 | None:intergenic | 40.0% |
| ! | TGATGATAGTTCTGTCTCAG+CGG | - | chr3_2:12868593-12868612 | None:intergenic | 40.0% |
| TGGAACAGATATCGATGCAT+CGG | - | chr3_2:12868641-12868660 | None:intergenic | 40.0% | |
| GGAAGTTTCTCAAGTTCAAG+TGG | + | chr3_2:12868678-12868697 | Msa0395780:CDS | 40.0% | |
| AGGTTAAGATGGGTGGTTTG+TGG | - | chr3_2:12865866-12865885 | None:intergenic | 45.0% | |
| TGTGTGAAGGTTAAGATGGG+TGG | - | chr3_2:12865873-12865892 | None:intergenic | 45.0% | |
| !! | GGCACATGTGTTGGTTGTTA+TGG | - | chr3_2:12866067-12866086 | None:intergenic | 45.0% |
| !! | TTTTTGGCCAAATACCTCCC+TGG | + | chr3_2:12866493-12866512 | Msa0395780:intron | 45.0% |
| ! | TTTTGGCCAAATACCTCCCT+GGG | + | chr3_2:12866494-12866513 | Msa0395780:intron | 45.0% |
| CGTGAAACTTAAAGGACCCA+GGG | - | chr3_2:12866513-12866532 | None:intergenic | 45.0% | |
| ACGTGAAACTTAAAGGACCC+AGG | - | chr3_2:12866514-12866533 | None:intergenic | 45.0% | |
| AATAGGCCAAATACCTCCCT+GGG | - | chr3_2:12866754-12866773 | None:intergenic | 45.0% | |
| AAATAGGCCAAATACCTCCC+TGG | - | chr3_2:12866755-12866774 | None:intergenic | 45.0% | |
| ACTACTACAACTGCAGTCCA+TGG | - | chr3_2:12866949-12866968 | None:intergenic | 45.0% | |
| !! | TCCTCTGTTGATGGTGATGT+AGG | + | chr3_2:12867317-12867336 | Msa0395780:intron | 45.0% |
| ACCTACATCACCATCAACAG+AGG | - | chr3_2:12867321-12867340 | None:intergenic | 45.0% | |
| !! | CTGTTGATGGTGATGTAGGT+TGG | + | chr3_2:12867321-12867340 | Msa0395780:intron | 45.0% |
| TTGGGAAGGTGAGTATGGAA+TGG | + | chr3_2:12867340-12867359 | Msa0395780:CDS | 45.0% | |
| GAGTATGGAATGGTTAGCAG+AGG | + | chr3_2:12867350-12867369 | Msa0395780:CDS | 45.0% | |
| GTTGAGGAAAAATGGAGGCA+GGG | + | chr3_2:12867686-12867705 | Msa0395780:intron | 45.0% | |
| TTGAGGAAAAATGGAGGCAG+GGG | + | chr3_2:12867687-12867706 | Msa0395780:intron | 45.0% | |
| ! | TTTTGCTCCCATCGAATGTG+GGG | + | chr3_2:12867740-12867759 | Msa0395780:intron | 45.0% |
| CTATCTTGGTCCTTGGAGAT+TGG | + | chr3_2:12867975-12867994 | Msa0395780:intron | 45.0% | |
| CATAAGCTCTCCAATCTCCA+AGG | - | chr3_2:12867988-12868007 | None:intergenic | 45.0% | |
| CACTTGTGAAACTGGTTGAG+AGG | - | chr3_2:12868049-12868068 | None:intergenic | 45.0% | |
| CTCTCAACCAGTTTCACAAG+TGG | + | chr3_2:12868047-12868066 | Msa0395780:intron | 45.0% | |
| AGCATGACTTTGTGCCTGTT+TGG | - | chr3_2:12868105-12868124 | None:intergenic | 45.0% | |
| ! | CATAAACTGCTGGCTGGAAA+AGG | - | chr3_2:12868237-12868256 | None:intergenic | 45.0% |
| TTTCCAGCCAGCAGTTTATG+TGG | + | chr3_2:12868237-12868256 | Msa0395780:intron | 45.0% | |
| CTTTCTGCCACATAAACTGC+TGG | - | chr3_2:12868247-12868266 | None:intergenic | 45.0% | |
| TGGTAAGAATTCTCCACCTC+AGG | + | chr3_2:12868384-12868403 | Msa0395780:CDS | 45.0% | |
| GTAGTAACTAAGTGATGGCC+CGG | - | chr3_2:12868428-12868447 | None:intergenic | 45.0% | |
| TCTGTCTCAGTAGACACAGA+GGG | - | chr3_2:12868487-12868506 | None:intergenic | 45.0% | |
| ! | GATGATAGTTCTGTCTCAGC+GGG | - | chr3_2:12868592-12868611 | None:intergenic | 45.0% |
| TGAACTTGAGAAACTTCCGC+AGG | - | chr3_2:12868676-12868695 | None:intergenic | 45.0% | |
| AGATACAGTGTCCACACTTG+AGG | - | chr3_2:12868725-12868744 | None:intergenic | 45.0% | |
| CAGCCGGTTGAATTGTGAAT+TGG | + | chr3_2:12869046-12869065 | Msa0395780:three_prime_UTR | 45.0% | |
| GGGCCAATTCACAATTCAAC+CGG | - | chr3_2:12869052-12869071 | None:intergenic | 45.0% | |
| TGAAGAATGTGCCCCTGACA+AGG | + | chr3_2:12866185-12866204 | Msa0395780:CDS | 50.0% | |
| !! | AAAGGACCCAGGGAGGTATT+TGG | - | chr3_2:12866745-12866764 | None:intergenic | 50.0% |
| GAAACTTAAAGGACCCAGGG+AGG | - | chr3_2:12866738-12866757 | None:intergenic | 50.0% | |
| GAAACTTAAAGGACCCAGGG+AGG | + | chr3_2:12866738-12866757 | Msa0395780:intron | 50.0% | |
| !! | AAAGGACCCAGGGAGGTATT+TGG | + | chr3_2:12866745-12866764 | Msa0395780:intron | 50.0% |
| TGCAATTGCAATGTCGCTGC+AGG | + | chr3_2:12866867-12866886 | Msa0395780:intron | 50.0% | |
| TGTGACTGCATTCGCGATTG+CGG | + | chr3_2:12866909-12866928 | Msa0395780:intron | 50.0% | |
| ! | GATGGTGATGTAGGTTGGGA+AGG | + | chr3_2:12867326-12867345 | Msa0395780:intron | 50.0% |
| ! | GTAGGTTGGGAAGGTGAGTA+TGG | + | chr3_2:12867335-12867354 | Msa0395780:intron | 50.0% |
| ATATCCACCACGTCGTAAGC+AGG | + | chr3_2:12867395-12867414 | Msa0395780:CDS | 50.0% | |
| TATCCACCACGTCGTAAGCA+GGG | + | chr3_2:12867396-12867415 | Msa0395780:CDS | 50.0% | |
| GGTTGAGGAAAAATGGAGGC+AGG | + | chr3_2:12867685-12867704 | Msa0395780:intron | 50.0% | |
| CTTCCTTCCCCACATTCGAT+GGG | - | chr3_2:12867750-12867769 | None:intergenic | 50.0% | |
| TCTTCCTTCCCCACATTCGA+TGG | - | chr3_2:12867751-12867770 | None:intergenic | 50.0% | |
| GTGGGGAAGGAAGATTTGCA+TGG | + | chr3_2:12867757-12867776 | Msa0395780:intron | 50.0% | |
| CAGAACACAGCAGCAATTGC+TGG | + | chr3_2:12868310-12868329 | Msa0395780:CDS | 50.0% | |
| AACACAGCAGCAATTGCTGG+TGG | + | chr3_2:12868313-12868332 | Msa0395780:CDS | 50.0% | |
| ! | TGCACTGATCTCAATTGCCG+CGG | + | chr3_2:12868339-12868358 | Msa0395780:CDS | 50.0% |
| ! | TCGACTTTTTGGACCTGAGG+TGG | - | chr3_2:12868400-12868419 | None:intergenic | 50.0% |
| !! | GCCCGGAGTATTCGACTTTT+TGG | - | chr3_2:12868411-12868430 | None:intergenic | 50.0% |
| CTCTGTCTCAGTAGACACAG+AGG | - | chr3_2:12868488-12868507 | None:intergenic | 50.0% | |
| GTAGGCACATCACTCTCTGT+TGG | - | chr3_2:12868526-12868545 | None:intergenic | 50.0% | |
| TTTCAAAAGCCGGACCGAGT+AGG | + | chr3_2:12869018-12869037 | Msa0395780:three_prime_UTR | 50.0% | |
| GAATTGGCCCGTTCGTTAGT+TGG | + | chr3_2:12869062-12869081 | Msa0395780:three_prime_UTR | 50.0% | |
| CTGCCACATAAACTGCTGGC+TGG | - | chr3_2:12868243-12868262 | None:intergenic | 55.0% | |
| TCCACCTGAAAGCTCTCCTG+CGG | + | chr3_2:12868657-12868676 | Msa0395780:CDS | 55.0% | |
| ACTTCCGCAGGAGAGCTTTC+AGG | - | chr3_2:12868664-12868683 | None:intergenic | 55.0% | |
| TCAGACGGAGACCTCAAGTG+TGG | + | chr3_2:12868711-12868730 | Msa0395780:CDS | 55.0% | |
| AACCGGCTGAACTGCCTACT+CGG | - | chr3_2:12869035-12869054 | None:intergenic | 55.0% | |
| CAACCCTGCTTACGACGTGG+TGG | - | chr3_2:12867402-12867421 | None:intergenic | 60.0% | |
| CACCACGTCGTAAGCAGGGT+TGG | + | chr3_2:12867400-12867419 | Msa0395780:CDS | 60.0% | |
| GTCCAACCCTGCTTACGACG+TGG | - | chr3_2:12867405-12867424 | None:intergenic | 60.0% | |
| CGTCGTAAGCAGGGTTGGAC+AGG | + | chr3_2:12867405-12867424 | Msa0395780:CDS | 60.0% | |
| GCTCCCATCGAATGTGGGGA+AGG | + | chr3_2:12867744-12867763 | Msa0395780:intron | 60.0% | |
| TCCGCAGGAGAGCTTTCAGG+TGG | - | chr3_2:12868661-12868680 | None:intergenic | 60.0% | |
| GCTGAACTGCCTACTCGGTC+CGG | - | chr3_2:12869030-12869049 | None:intergenic | 60.0% | |
| GACCGAGTAGGCAGTTCAGC+CGG | + | chr3_2:12869030-12869049 | Msa0395780:three_prime_UTR | 60.0% | |
| TCAGCGGGCACGATGCTCTC+GGG | - | chr3_2:12868577-12868596 | None:intergenic | 65.0% | |
| CTCAGCGGGCACGATGCTCT+CGG | - | chr3_2:12868578-12868597 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 12865843 | 12869181 | 12865843 | ID=Msa0395780;Name=Msa0395780 |
| chr3_2 | mRNA | 12865843 | 12869181 | 12865843 | ID=Msa0395780-mRNA-1;Parent=Msa0395780;Name=Msa0395780-mRNA-1;_AED=0.06;_eAED=0.06;_QI=199|1|1|1|1|1|3|434|269 |
| chr3_2 | exon | 12865843 | 12866209 | 12865843 | ID=Msa0395780-mRNA-1:exon:3002;Parent=Msa0395780-mRNA-1 |
| chr3_2 | exon | 12867339 | 12867476 | 12867339 | ID=Msa0395780-mRNA-1:exon:3003;Parent=Msa0395780-mRNA-1 |
| chr3_2 | exon | 12868244 | 12869181 | 12868244 | ID=Msa0395780-mRNA-1:exon:3004;Parent=Msa0395780-mRNA-1 |
| chr3_2 | five_prime_UTR | 12865843 | 12866041 | 12865843 | ID=Msa0395780-mRNA-1:five_prime_utr;Parent=Msa0395780-mRNA-1 |
| chr3_2 | CDS | 12866042 | 12866209 | 12866042 | ID=Msa0395780-mRNA-1:cds;Parent=Msa0395780-mRNA-1 |
| chr3_2 | CDS | 12867339 | 12867476 | 12867339 | ID=Msa0395780-mRNA-1:cds;Parent=Msa0395780-mRNA-1 |
| chr3_2 | CDS | 12868244 | 12868747 | 12868244 | ID=Msa0395780-mRNA-1:cds;Parent=Msa0395780-mRNA-1 |
| chr3_2 | three_prime_UTR | 12868748 | 12869181 | 12868748 | ID=Msa0395780-mRNA-1:three_prime_utr;Parent=Msa0395780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
