AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0729060


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0729060 MtrunA17_Chr5g0435631 95.652 483 14 1 1 483 1 476 0.0 960
Msa0729060 MtrunA17_Chr4g0009431 80.579 484 84 3 1 482 1 476 0.0 815
Msa0729060 MtrunA17_Chr3g0112121 87.162 444 48 3 1 443 1 436 0.0 804
Msa0729060 MtrunA17_Chr2g0334101 48.555 346 164 9 89 426 75 414 1.53e-107 326
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0729060 AT2G39730.1 78.675 483 93 3 1 482 1 474 0.0 794
Msa0729060 AT2G39730.2 77.827 451 90 3 1 450 1 442 0.0 731
Msa0729060 AT2G39730.3 78.523 447 86 3 1 446 1 438 0.0 730
Msa0729060 AT1G73110.2 55.593 295 122 7 139 426 39 331 1.33e-111 333
Msa0729060 AT1G73110.1 52.866 314 137 8 120 426 119 428 2.40e-110 333

Find 121 sgRNAs with CRISPR-Local

Find 281 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTATTGTGTTCTATAGTTT+TGG 0.180442 5_1:+35522619 Msa0729060:three_prime_UTR
TTCCTCTAATTCTTGGTATC+TGG 0.183651 5_1:+35519551 Msa0729060:CDS
TAAGCATTCTGCTATTAATT+AGG 0.221537 5_1:+35522529 Msa0729060:three_prime_UTR
TCTGCTATTAATTAGGTTAA+AGG 0.224226 5_1:+35522536 Msa0729060:three_prime_UTR
TAGAGAAATGTGTATTGTTT+TGG 0.228371 5_1:-35517882 None:intergenic
TTACCATCTTGTTAAAATAT+TGG 0.238870 5_1:+35522596 Msa0729060:three_prime_UTR
TCAATTGGCAGACAAGTATT+TGG 0.252747 5_1:+35521271 Msa0729060:CDS
CTTCAGGTTCCTCTAATTCT+TGG 0.267602 5_1:+35519544 Msa0729060:intron
AAATTACATGCCTTGATATT+AGG 0.286542 5_1:-35519266 None:intergenic
GTTCCAAGTTCATCATTCTT+TGG 0.302261 5_1:+35518629 Msa0729060:CDS
AAAAGTTGGAGGTCCTTCTT+TGG 0.306483 5_1:-35521168 None:intergenic
CCAGATGAAACCTTTGTGTT+TGG 0.318881 5_1:-35518683 None:intergenic
CCAATACGATCCTCTCTTGT+AGG 0.328747 5_1:-35520697 None:intergenic
CCAACAAATGTTCAACTTCC+TGG 0.344096 5_1:+35520559 Msa0729060:CDS
ATCAAGAGTGGATCTTACTA+TGG 0.352058 5_1:+35521329 Msa0729060:CDS
TCTCCAGCACTCATCATGAT+AGG 0.354239 5_1:-35520334 None:intergenic
TCCTCTAATTCTTGGTATCT+GGG 0.357485 5_1:+35519552 Msa0729060:CDS
TTGGAGAAACTGTTGGAGTA+TGG 0.371448 5_1:+35521209 Msa0729060:CDS
TAAGTGTTGCATTTACCATT+TGG 0.386480 5_1:-35520519 None:intergenic
TTTGGATCCGTACAACCTTC+AGG 0.387004 5_1:-35522440 None:intergenic
CAGTTTCTCCAAAGTCATCT+TGG 0.388317 5_1:-35521198 None:intergenic
CCAAACACAAAGGTTTCATC+TGG 0.389569 5_1:+35518683 Msa0729060:CDS
CCCCAGATACCAAGAATTAG+AGG 0.399957 5_1:-35519553 None:intergenic
CCAGGAAGTTGAACATTTGT+TGG 0.402105 5_1:-35520559 None:intergenic
ATCGTATTGGTGTTTGTAAA+GGG 0.408865 5_1:+35520710 Msa0729060:CDS
GTCGTATGGAGAAATTCTAT+TGG 0.410469 5_1:+35520671 Msa0729060:CDS
CGTGTGCCTATCATTGTTAC+TGG 0.412562 5_1:+35520607 Msa0729060:CDS
CAGATTTCTTTGGTGCACTT+AGG 0.414256 5_1:+35521066 Msa0729060:intron
AGATTTCTTTGGTGCACTTA+GGG 0.414272 5_1:+35521067 Msa0729060:intron
AGGCAGAGTCAAGAAGTTCT+TGG 0.414493 5_1:-35519246 None:intergenic
CCATCATCACTTCTAGCAGT+TGG 0.419425 5_1:-35522479 None:intergenic
TGATCAACCCAAGATGACTT+TGG 0.420505 5_1:+35521190 Msa0729060:CDS
AAATGTGAAGAGAGTTCAAT+TGG 0.422067 5_1:+35521256 Msa0729060:CDS
CAAAGACAGGTGGAGAGGTT+TGG 0.422447 5_1:+35518754 Msa0729060:CDS
TCCGTACAACCTTCAGGAAC+AGG 0.428174 5_1:-35522434 None:intergenic
CAGTTGAGCTTGAATAGCTC+TGG 0.429062 5_1:+35518593 Msa0729060:CDS
ATACGACCGTCACGAATAAG+AGG 0.436360 5_1:-35520655 None:intergenic
TGAGCTTGTCTTTGCTAAGA+TGG 0.442576 5_1:+35519606 Msa0729060:CDS
GATCGTATTGGTGTTTGTAA+AGG 0.445421 5_1:+35520709 Msa0729060:CDS
TCATTACCAGTAACAATGAT+AGG 0.445482 5_1:-35520613 None:intergenic
CTTTGTCGAATTAGTTTCGC+TGG 0.446692 5_1:-35520382 None:intergenic
CAGGAAGTTGAACATTTGTT+GGG 0.448889 5_1:-35520558 None:intergenic
TTCCAGCATCTTGTGGTGCT+TGG 0.450580 5_1:-35518841 None:intergenic
AGTTTCTCCAAAGTCATCTT+GGG 0.451215 5_1:-35521197 None:intergenic
CTTCCAAAGAATGATGAACT+TGG 0.453642 5_1:-35518632 None:intergenic
TCTTATTCGTGACGGTCGTA+TGG 0.454844 5_1:+35520657 Msa0729060:CDS
CATCACAAGAGGGAAGGGTT+TGG 0.456396 5_1:+35518805 Msa0729060:CDS
TACTATAAATTCATTCCCTC+TGG 0.456659 5_1:+35517844 Msa0729060:five_prime_UTR
CATCATCACTTCTAGCAGTT+GGG 0.458963 5_1:-35522478 None:intergenic
TGATGCAGGAGCCGGTCGTA+TGG 0.459178 5_1:+35520468 Msa0729060:CDS
GAGCTAGAAAGTGGAAATGC+AGG 0.469912 5_1:+35520355 Msa0729060:CDS
AAGATTGTTGACACTTTCCC+TGG 0.475212 5_1:+35520772 Msa0729060:CDS
GAAGTGAGAAAGTGGATTGC+TGG 0.475410 5_1:+35521107 Msa0729060:CDS
AACGATCTTGATGCAGGAGC+CGG 0.476723 5_1:+35520460 Msa0729060:CDS
TTCATAAACGATCTTGATGC+AGG 0.477723 5_1:+35520454 Msa0729060:CDS
CTTGGTATCTGGGGAGGTAA+AGG 0.479768 5_1:+35519562 Msa0729060:CDS
TTCCAAGCACCACAAGATGC+TGG 0.484718 5_1:+35518839 Msa0729060:CDS
TCGTATGGAGAAATTCTATT+GGG 0.487732 5_1:+35520672 Msa0729060:CDS
TCCTGTTCCTGAAGGTTGTA+CGG 0.488800 5_1:+35522433 Msa0729060:CDS
CTTGACTCTGCCTAATATCA+AGG 0.490195 5_1:+35519256 Msa0729060:CDS
TATTTGGAAGGGGCTGCTCT+TGG 0.494287 5_1:+35521287 Msa0729060:CDS
AACCTTGACAACACCATGGA+TGG 0.505223 5_1:+35519176 Msa0729060:CDS
AGCCCTATCATGATGAGTGC+TGG 0.507079 5_1:+35520331 Msa0729060:intron
ATCTTGGGTTGATCAAAAGT+TGG 0.516048 5_1:-35521182 None:intergenic
ACTTTCCCTGGTCAATCCAT+TGG 0.521362 5_1:+35520784 Msa0729060:CDS
ATGATGATGAAGTGAGAAAG+TGG 0.522348 5_1:+35521099 Msa0729060:CDS
TCTTATGAGTACATTAGCAC+TGG 0.523592 5_1:+35518884 Msa0729060:CDS
GGTGTTGGCATTGAAACCAT+TGG 0.529872 5_1:+35521128 Msa0729060:CDS
GATGACTTTGGAGAAACTGT+TGG 0.532144 5_1:+35521202 Msa0729060:CDS
GGCAGACAAGTATTTGGAAG+GGG 0.535052 5_1:+35521277 Msa0729060:CDS
GATGCAGGAGCCGGTCGTAT+GGG 0.535411 5_1:+35520469 Msa0729060:CDS
GCAGCAGACATAATACGAAA+AGG 0.536262 5_1:+35520415 Msa0729060:CDS
ATCTTAACAACATCTTCCTC+AGG 0.537207 5_1:-35520754 None:intergenic
TAGCAAAGACAAGCTCAGCT+TGG 0.537801 5_1:-35519600 None:intergenic
CTCCAGCACTCATCATGATA+GGG 0.540258 5_1:-35520333 None:intergenic
GAGCTTGTCTTTGCTAAGAT+GGG 0.542887 5_1:+35519607 Msa0729060:CDS
AACCATCCATGGTGTTGTCA+AGG 0.543770 5_1:-35519178 None:intergenic
GCAAGCAAACTGACAAAGAC+AGG 0.544491 5_1:+35518741 Msa0729060:CDS
CCAACTGCTAGAAGTGATGA+TGG 0.547629 5_1:+35522479 Msa0729060:CDS
GTGTTGGCATTGAAACCATT+GGG 0.550669 5_1:+35521129 Msa0729060:CDS
CCTCTAATTCTTGGTATCTG+GGG 0.553152 5_1:+35519553 Msa0729060:CDS
TTGGCAGACAAGTATTTGGA+AGG 0.553516 5_1:+35521275 Msa0729060:CDS
GTAAGTATTCCTGTTCCTGA+AGG 0.553834 5_1:+35522425 Msa0729060:CDS
TGTTGTTCCACCCATACGAC+CGG 0.556920 5_1:-35520479 None:intergenic
ATTGTGTGCACAATGTTAGT+CGG 0.557256 5_1:+35522647 Msa0729060:three_prime_UTR
ATACACTGTGAACAACCAAA+TGG 0.557588 5_1:+35520504 Msa0729060:CDS
CCTACAAGAGAGGATCGTAT+TGG 0.557801 5_1:+35520697 Msa0729060:CDS
AGCTGAGACTGAGGCAACCA+TGG 0.564992 5_1:-35517933 None:intergenic
AAGCTTGTGAACTCCAAAGA+AGG 0.566326 5_1:+35521155 Msa0729060:CDS
GCTATTAATTAGGTTAAAGG+AGG 0.570260 5_1:+35522539 Msa0729060:three_prime_UTR
TCTTCTTTGTTATACATACC+AGG 0.570852 5_1:-35520577 None:intergenic
GCAGGAGCCGGTCGTATGGG+TGG 0.574559 5_1:+35520472 Msa0729060:CDS
ACAAGCTTGTCCATAAAAGC+AGG 0.575624 5_1:-35519212 None:intergenic
AGTGCTGGAGAGCTAGAAAG+TGG 0.577837 5_1:+35520346 Msa0729060:CDS
AGCTCTAACAGCTGAGACTG+AGG 0.584438 5_1:-35517942 None:intergenic
CTAATTCTTGGTATCTGGGG+AGG 0.593707 5_1:+35519556 Msa0729060:CDS
TGGCAGACAAGTATTTGGAA+GGG 0.594237 5_1:+35521276 Msa0729060:CDS
AGAAAGTGGATTGCTGGTGT+TGG 0.596527 5_1:+35521113 Msa0729060:CDS
AACTTACCAATGGATTGACC+AGG 0.596752 5_1:-35520790 None:intergenic
ACAAGACATCACAAGAGGGA+AGG 0.601230 5_1:+35518799 Msa0729060:CDS
ATCTGGGGAGGTAAAGGTCA+AGG 0.603588 5_1:+35519568 Msa0729060:CDS
TTGGGTTGATCAAAAGTTGG+AGG 0.603661 5_1:-35521179 None:intergenic
GGTGAGCAAATTTGTCCAGA+GGG 0.605860 5_1:-35517859 None:intergenic
AATCAAGATGCTATCAAGAG+TGG 0.612496 5_1:+35521317 Msa0729060:CDS
TATGCTCCTCTTATTCGTGA+CGG 0.615800 5_1:+35520649 Msa0729060:CDS
GGGTGAGCAAATTTGTCCAG+AGG 0.616427 5_1:-35517860 None:intergenic
CAAGACATCACAAGAGGGAA+GGG 0.616753 5_1:+35518800 Msa0729060:CDS
CTCGAGGTTTCCAAACACAA+AGG 0.626514 5_1:+35518673 Msa0729060:CDS
TAATGAGTTCCAGCATCTTG+TGG 0.630506 5_1:-35518848 None:intergenic
GATCAACAAGACATCACAAG+AGG 0.631005 5_1:+35518794 Msa0729060:CDS
TAGACATGATAATGTTCCTG+AGG 0.637771 5_1:+35520738 Msa0729060:CDS
CTATTGGGCACCTACAAGAG+AGG 0.641182 5_1:+35520687 Msa0729060:CDS
CTTTGTGTTTGGAAACCTCG+AGG 0.648452 5_1:-35518672 None:intergenic
ACTGACAAAGACAGGTGGAG+AGG 0.648715 5_1:+35518749 Msa0729060:CDS
AATACAACGCAACACAGCCA+TGG 0.656200 5_1:+35517916 Msa0729060:exon
AGCAAACTGACAAAGACAGG+TGG 0.656408 5_1:+35518744 Msa0729060:CDS
GCTTAAAGAAAGTTACCTCG+AGG 0.671149 5_1:+35518657 Msa0729060:CDS
ATCAACAAGACATCACAAGA+GGG 0.675178 5_1:+35518795 Msa0729060:CDS
TCAGCTGTTAGAGCTGTCAG+TGG 0.687429 5_1:+35517950 Msa0729060:CDS
ACTTACCAATGGATTGACCA+GGG 0.716554 5_1:-35520789 None:intergenic
GTACAACCTTGACAACACCA+TGG 0.736816 5_1:+35519172 Msa0729060:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATAATATATGTAATAAAC+TGG - chr5_1:35521382-35521401 None:intergenic 10.0%
!! TTTGTTTATAATAGAAATAA+TGG + chr5_1:35521491-35521510 Msa0729060:intron 10.0%
!!! TAATATTTAAAAGTTTTGAT+AGG - chr5_1:35521832-35521851 None:intergenic 10.0%
!! AGATTGTAATAAAAAAAAAA+AGG - chr5_1:35521897-35521916 None:intergenic 10.0%
!! AAAAAACATAGTATATTATA+GGG - chr5_1:35522060-35522079 None:intergenic 10.0%
!! AAAAAAACATAGTATATTAT+AGG - chr5_1:35522061-35522080 None:intergenic 10.0%
!!! TTTTTTTATAAAGACTTTAA+TGG - chr5_1:35522085-35522104 None:intergenic 10.0%
!! TAGAAAATCAAATAAAAAAA+AGG - chr5_1:35522383-35522402 None:intergenic 10.0%
!! ATGATTATTCATAAAAAAAA+TGG - chr5_1:35522687-35522706 None:intergenic 10.0%
!! ATTTATAAATCAAAATACCA+TGG - chr5_1:35518298-35518317 None:intergenic 15.0%
!! ATAAATATAGTATGATATGA+CGG + chr5_1:35518312-35518331 Msa0729060:intron 15.0%
!!! CAAATCTTTTTTTTATATGA+AGG + chr5_1:35519119-35519138 Msa0729060:intron 15.0%
!!! AATATTTTCATAATTTCTTC+AGG + chr5_1:35519528-35519547 Msa0729060:intron 15.0%
!! TATGTATTTGATTCAAAATT+TGG + chr5_1:35520889-35520908 Msa0729060:intron 15.0%
!!! AAAACATTTAAAGTATGAAT+AGG + chr5_1:35521519-35521538 Msa0729060:intron 15.0%
!! AAAATAATTGATAAGTAGCT+AGG - chr5_1:35517996-35518015 None:intergenic 20.0%
!! CAAATAATGATTCAAATGTT+TGG + chr5_1:35518146-35518165 Msa0729060:intron 20.0%
!!! ATTTTAATAGTACATAAGAG+TGG + chr5_1:35518377-35518396 Msa0729060:intron 20.0%
!!! ATCTTTTTTTTATATGAAGG+TGG + chr5_1:35519122-35519141 Msa0729060:intron 20.0%
!! ATTATTATTCATGTAGATCA+TGG + chr5_1:35519309-35519328 Msa0729060:intron 20.0%
!!! TGTTGTGAATTTTTATATTG+CGG + chr5_1:35519366-35519385 Msa0729060:intron 20.0%
!!! TTTTTGGAACAATTAATTGA+TGG + chr5_1:35519669-35519688 Msa0729060:intron 20.0%
!!! ACTTTTTTAATTACTCCATT+CGG + chr5_1:35520831-35520850 Msa0729060:intron 20.0%
!! CTTATATATAAGAGTAAGTT+CGG + chr5_1:35520855-35520874 Msa0729060:intron 20.0%
!! CTTATATATAAGAGAAAGTT+CGG + chr5_1:35520938-35520957 Msa0729060:intron 20.0%
!!! TTATTTTTTGCAGATTTCTT+TGG + chr5_1:35521056-35521075 Msa0729060:intron 20.0%
!! AACAAAAGTTGTATTCATTA+TGG - chr5_1:35521477-35521496 None:intergenic 20.0%
!!! ATATTTTTTTTCACCGATAA+AGG + chr5_1:35521859-35521878 Msa0729060:intron 20.0%
!!! TATTTTTTTTCACCGATAAA+GGG + chr5_1:35521860-35521879 Msa0729060:intron 20.0%
!! TATTATAAAGAGTTTGATGT+GGG - chr5_1:35521988-35522007 None:intergenic 20.0%
!! ATATTATAAAGAGTTTGATG+TGG - chr5_1:35521989-35522008 None:intergenic 20.0%
!!! TTTTGCTTCTTTCTAATAAA+AGG + chr5_1:35522130-35522149 Msa0729060:intron 20.0%
!! TCTAATAAAAGGCAAATTAT+AGG + chr5_1:35522141-35522160 Msa0729060:intron 20.0%
!! CTAATAAAAGGCAAATTATA+GGG + chr5_1:35522142-35522161 Msa0729060:intron 20.0%
!!! GAACTGAAAACAATTTTATA+AGG + chr5_1:35522178-35522197 Msa0729060:intron 20.0%
!!! TTTTATTTGATTTTCTATGC+AGG + chr5_1:35522386-35522405 Msa0729060:intron 20.0%
!! TTACCATCTTGTTAAAATAT+TGG + chr5_1:35522596-35522615 Msa0729060:three_prime_UTR 20.0%
!!! AATCCAATATTTTAACAAGA+TGG - chr5_1:35522602-35522621 None:intergenic 20.0%
!!! ATTATTGTGTTCTATAGTTT+TGG + chr5_1:35522619-35522638 Msa0729060:three_prime_UTR 20.0%
!!! TTATTGTGTTCTATAGTTTT+GGG + chr5_1:35522620-35522639 Msa0729060:three_prime_UTR 20.0%
!! AGAGAAATGTGTATTGTTTT+GGG - chr5_1:35517884-35517903 None:intergenic 25.0%
!! TAGAGAAATGTGTATTGTTT+TGG - chr5_1:35517885-35517904 None:intergenic 25.0%
! ATAGCATTTGAGTAAACTTT+CGG + chr5_1:35518351-35518370 Msa0729060:intron 25.0%
!!! TTTTTTTTATATGAAGGTGG+TGG + chr5_1:35519125-35519144 Msa0729060:intron 25.0%
! AAATTACATGCCTTGATATT+AGG - chr5_1:35519269-35519288 None:intergenic 25.0%
!!! TAGATCATGGTTTTAAATTG+TGG + chr5_1:35519322-35519341 Msa0729060:intron 25.0%
! CATCAAAATTCTTTATACTG+AGG + chr5_1:35519416-35519435 Msa0729060:intron 25.0%
!!! AAGAGTTTCAATTTTGGAAA+TGG - chr5_1:35519650-35519669 None:intergenic 25.0%
!! CCAAAAAAGAGTTTCAATTT+TGG - chr5_1:35519656-35519675 None:intergenic 25.0%
!!! CCAAAATTGAAACTCTTTTT+TGG + chr5_1:35519653-35519672 Msa0729060:intron 25.0%
!!! TTGAAGCTATGATTTTTTCT+AGG - chr5_1:35519721-35519740 None:intergenic 25.0%
! AAAATCATAGCTTCAAATCA+AGG + chr5_1:35519725-35519744 Msa0729060:intron 25.0%
!!! CAAATCAAGGTTTTGTAAAA+TGG + chr5_1:35519738-35519757 Msa0729060:intron 25.0%
! ATTAATACATCATCATCAGA+TGG - chr5_1:35520264-35520283 None:intergenic 25.0%
!! AAAGTTTCAACATTCTAGAA+GGG - chr5_1:35520816-35520835 None:intergenic 25.0%
! AAAAGTTTCAACATTCTAGA+AGG - chr5_1:35520817-35520836 None:intergenic 25.0%
!! TTTTCTAAACAGATAAGAGT+TGG - chr5_1:35520995-35521014 None:intergenic 25.0%
! AAGCAGAACAATAGAATAAT+TGG + chr5_1:35521023-35521042 Msa0729060:intron 25.0%
!!! GTATGAATAGGTATTGATTT+AGG + chr5_1:35521531-35521550 Msa0729060:intron 25.0%
! AATGATTTACTTATCCTTGA+AGG - chr5_1:35521563-35521582 None:intergenic 25.0%
! TTCAAGGATAAGTAAATCAT+TGG + chr5_1:35521562-35521581 Msa0729060:intron 25.0%
!! GGTTAAGTTTTACAAACAAT+TGG + chr5_1:35521583-35521602 Msa0729060:intron 25.0%
!! AAGTTTTACAAACAATTGGA+AGG + chr5_1:35521587-35521606 Msa0729060:intron 25.0%
! ATGAGAATCTATCTATATTC+AGG - chr5_1:35521782-35521801 None:intergenic 25.0%
!! TAAAATTGTTTTCAGTTCCT+TGG - chr5_1:35522176-35522195 None:intergenic 25.0%
!!! GTATTTTTTTTCCTCCATTT+TGG - chr5_1:35522247-35522266 None:intergenic 25.0%
!! CTCAAAAAAGTATGTATGAT+TGG + chr5_1:35522333-35522352 Msa0729060:intron 25.0%
! TAAGCATTCTGCTATTAATT+AGG + chr5_1:35522529-35522548 Msa0729060:three_prime_UTR 25.0%
! TCTGCTATTAATTAGGTTAA+AGG + chr5_1:35522536-35522555 Msa0729060:three_prime_UTR 25.0%
TACTATAAATTCATTCCCTC+TGG + chr5_1:35517844-35517863 Msa0729060:five_prime_UTR 30.0%
!! GAGAAATGTGTATTGTTTTG+GGG - chr5_1:35517883-35517902 None:intergenic 30.0%
! TGATTCAAATGTTTGGAATC+TGG + chr5_1:35518153-35518172 Msa0729060:intron 30.0%
! AAATGTTTGGAATCTGGATT+TGG + chr5_1:35518159-35518178 Msa0729060:intron 30.0%
! TACATCTCAGTTGACTTAAT+TGG + chr5_1:35518237-35518256 Msa0729060:intron 30.0%
! TCAGTTGACTTAATTGGTAT+TGG + chr5_1:35518243-35518262 Msa0729060:intron 30.0%
! CAGTTGACTTAATTGGTATT+GGG + chr5_1:35518244-35518263 Msa0729060:intron 30.0%
TAAATCAAAATACCATGGAC+TGG - chr5_1:35518293-35518312 None:intergenic 30.0%
! CTAAAGTATCAGTTCTACTT+AGG - chr5_1:35518409-35518428 None:intergenic 30.0%
TATTACCAATGTCTACGAAT+AGG + chr5_1:35518528-35518547 Msa0729060:intron 30.0%
AATTCACAACATAACTGCAA+CGG - chr5_1:35519357-35519376 None:intergenic 30.0%
! CTATTTTATTCGAGTCTTAG+TGG - chr5_1:35519497-35519516 None:intergenic 30.0%
TTAAACGTAACCTCATATGT+CGG + chr5_1:35520011-35520030 Msa0729060:intron 30.0%
! TAAGTGTTGCATTTACCATT+TGG - chr5_1:35520522-35520541 None:intergenic 30.0%
! TCTTCTTTGTTATACATACC+AGG - chr5_1:35520580-35520599 None:intergenic 30.0%
TCATTACCAGTAACAATGAT+AGG - chr5_1:35520616-35520635 None:intergenic 30.0%
TCGTATGGAGAAATTCTATT+GGG + chr5_1:35520672-35520691 Msa0729060:CDS 30.0%
! ATCGTATTGGTGTTTGTAAA+GGG + chr5_1:35520710-35520729 Msa0729060:CDS 30.0%
CTCTTATATATAAGACCGAA+TGG - chr5_1:35520849-35520868 None:intergenic 30.0%
! TCTTCACATTTTCTTGTTCT+TGG - chr5_1:35521247-35521266 None:intergenic 30.0%
AAATGTGAAGAGAGTTCAAT+TGG + chr5_1:35521256-35521275 Msa0729060:CDS 30.0%
!! TCCTAAGTTCAATTTTGATG+CGG - chr5_1:35522015-35522034 None:intergenic 30.0%
AAAGAAGCAAAAGATATTGC+AGG - chr5_1:35522122-35522141 None:intergenic 30.0%
GAATCAATCATAGACCAAAA+TGG + chr5_1:35522230-35522249 Msa0729060:intron 30.0%
!! TTTGATTTTCTATGCAGGTA+AGG + chr5_1:35522391-35522410 Msa0729060:intron 30.0%
GCTATTAATTAGGTTAAAGG+AGG + chr5_1:35522539-35522558 Msa0729060:three_prime_UTR 30.0%
AGCTAGGTAAAGTAACATAC+TGG - chr5_1:35517980-35517999 None:intergenic 35.0%
ATCTGGATTTGGATTCTCTA+TGG + chr5_1:35518170-35518189 Msa0729060:intron 35.0%
GATGTACGATCATAATAGGA+CGG - chr5_1:35518223-35518242 None:intergenic 35.0%
CTGAGATGTACGATCATAAT+AGG - chr5_1:35518227-35518246 None:intergenic 35.0%
TATAGTATGATATGACGGTC+TGG + chr5_1:35518317-35518336 Msa0729060:intron 35.0%
GTTCCAAGTTCATCATTCTT+TGG + chr5_1:35518629-35518648 Msa0729060:CDS 35.0%
CTTCCAAAGAATGATGAACT+TGG - chr5_1:35518635-35518654 None:intergenic 35.0%
ATCAACAAGACATCACAAGA+GGG + chr5_1:35518795-35518814 Msa0729060:CDS 35.0%
TCTTATGAGTACATTAGCAC+TGG + chr5_1:35518884-35518903 Msa0729060:CDS 35.0%
TTGTGCAGTTCCAATTCAAT+CGG - chr5_1:35519017-35519036 None:intergenic 35.0%
GTTCAATTGGTTGAATTGTC+TGG + chr5_1:35519068-35519087 Msa0729060:intron 35.0%
ATTGGTTGAATTGTCTGGTT+CGG + chr5_1:35519073-35519092 Msa0729060:intron 35.0%
ACCATGTATGATGGTATTTC+AGG + chr5_1:35519150-35519169 Msa0729060:intron 35.0%
ACCTGAAATACCATCATACA+TGG - chr5_1:35519154-35519173 None:intergenic 35.0%
TGCAATGTAAAAACCATCCA+TGG - chr5_1:35519192-35519211 None:intergenic 35.0%
!! TTACATTGCACCTGCTTTTA+TGG + chr5_1:35519202-35519221 Msa0729060:CDS 35.0%
TTGATGTCTTTACACGTCAT+CGG - chr5_1:35519402-35519421 None:intergenic 35.0%
CAGTATATGCTTCAATTGCA+TGG - chr5_1:35519474-35519493 None:intergenic 35.0%
TTCCTCTAATTCTTGGTATC+TGG + chr5_1:35519551-35519570 Msa0729060:CDS 35.0%
TCCTCTAATTCTTGGTATCT+GGG + chr5_1:35519552-35519571 Msa0729060:CDS 35.0%
!! GTAAAATGGTTTTGCAACCA+CGG + chr5_1:35519752-35519771 Msa0729060:intron 35.0%
AACACTCACACATTTGGATT+GGG - chr5_1:35520206-35520225 None:intergenic 35.0%
TAACACTCACACATTTGGAT+TGG - chr5_1:35520207-35520226 None:intergenic 35.0%
GCTGGAATTGTCAAATCATA+TGG - chr5_1:35520314-35520333 None:intergenic 35.0%
TTCATAAACGATCTTGATGC+AGG + chr5_1:35520454-35520473 Msa0729060:CDS 35.0%
ATACACTGTGAACAACCAAA+TGG + chr5_1:35520504-35520523 Msa0729060:CDS 35.0%
CAGGAAGTTGAACATTTGTT+GGG - chr5_1:35520561-35520580 None:intergenic 35.0%
GTCGTATGGAGAAATTCTAT+TGG + chr5_1:35520671-35520690 Msa0729060:CDS 35.0%
! GATCGTATTGGTGTTTGTAA+AGG + chr5_1:35520709-35520728 Msa0729060:CDS 35.0%
! TAGACATGATAATGTTCCTG+AGG + chr5_1:35520738-35520757 Msa0729060:CDS 35.0%
ATCTTAACAACATCTTCCTC+AGG - chr5_1:35520757-35520776 None:intergenic 35.0%
! AGATTTCTTTGGTGCACTTA+GGG + chr5_1:35521067-35521086 Msa0729060:intron 35.0%
! ATGATGATGAAGTGAGAAAG+TGG + chr5_1:35521099-35521118 Msa0729060:CDS 35.0%
!! ATCTTGGGTTGATCAAAAGT+TGG - chr5_1:35521185-35521204 None:intergenic 35.0%
AGTTTCTCCAAAGTCATCTT+GGG - chr5_1:35521200-35521219 None:intergenic 35.0%
TCAATTGGCAGACAAGTATT+TGG + chr5_1:35521271-35521290 Msa0729060:CDS 35.0%
AATCAAGATGCTATCAAGAG+TGG + chr5_1:35521317-35521336 Msa0729060:CDS 35.0%
ATCAAGAGTGGATCTTACTA+TGG + chr5_1:35521329-35521348 Msa0729060:CDS 35.0%
GATTTAGGAAAAGTCCTTCA+AGG + chr5_1:35521546-35521565 Msa0729060:intron 35.0%
CACAAATTGAGTCTAGACTT+AGG - chr5_1:35521637-35521656 None:intergenic 35.0%
TGTTAACCGTTCAATGTGTT+AGG - chr5_1:35521672-35521691 None:intergenic 35.0%
CGTACACATTAAAGGACTTT+AGG - chr5_1:35521706-35521725 None:intergenic 35.0%
! GACTGTTTGTTACCCTTTAT+CGG - chr5_1:35521875-35521894 None:intergenic 35.0%
ACCGCATCAAAATTGAACTT+AGG + chr5_1:35522011-35522030 Msa0729060:intron 35.0%
AAAGGCAAATTATAGGGACT+AGG + chr5_1:35522148-35522167 Msa0729060:intron 35.0%
TCAATCATAGACCAAAATGG+AGG + chr5_1:35522233-35522252 Msa0729060:intron 35.0%
ATTGTGTGCACAATGTTAGT+CGG + chr5_1:35522647-35522666 Msa0729060:three_prime_UTR 35.0%
GACGGTCTAGATTGTTTGAT+TGG - chr5_1:35518205-35518224 None:intergenic 40.0%
! GACTTAATTGGTATTGGGCA+AGG + chr5_1:35518249-35518268 Msa0729060:intron 40.0%
TGACACCTATTCGTAGACAT+TGG - chr5_1:35518536-35518555 None:intergenic 40.0%
TCATGTCTGATGTGTCTCAT+AGG + chr5_1:35518553-35518572 Msa0729060:intron 40.0%
GCTTAAAGAAAGTTACCTCG+AGG + chr5_1:35518657-35518676 Msa0729060:CDS 40.0%
CCAGATGAAACCTTTGTGTT+TGG - chr5_1:35518686-35518705 None:intergenic 40.0%
CCAAACACAAAGGTTTCATC+TGG + chr5_1:35518683-35518702 Msa0729060:CDS 40.0%
GATCAACAAGACATCACAAG+AGG + chr5_1:35518794-35518813 Msa0729060:CDS 40.0%
TAATGAGTTCCAGCATCTTG+TGG - chr5_1:35518851-35518870 None:intergenic 40.0%
! AAAAGTTCCCGACACTGATT+CGG + chr5_1:35518967-35518986 Msa0729060:intron 40.0%
CATGCTTCAACCGATTGAAT+TGG + chr5_1:35519004-35519023 Msa0729060:intron 40.0%
!! TTGAATTGTCTGGTTCGGTT+CGG + chr5_1:35519078-35519097 Msa0729060:intron 40.0%
!!! CGGTTCGGTTTTTGAAAGAT+TGG + chr5_1:35519093-35519112 Msa0729060:intron 40.0%
ACAAGCTTGTCCATAAAAGC+AGG - chr5_1:35519215-35519234 None:intergenic 40.0%
CTTGACTCTGCCTAATATCA+AGG + chr5_1:35519256-35519275 Msa0729060:CDS 40.0%
! CTTCAGGTTCCTCTAATTCT+TGG + chr5_1:35519544-35519563 Msa0729060:intron 40.0%
CCTCTAATTCTTGGTATCTG+GGG + chr5_1:35519553-35519572 Msa0729060:CDS 40.0%
TGAGCTTGTCTTTGCTAAGA+TGG + chr5_1:35519606-35519625 Msa0729060:CDS 40.0%
GAGCTTGTCTTTGCTAAGAT+GGG + chr5_1:35519607-35519626 Msa0729060:CDS 40.0%
TGACGTTGCAAATATAACCG+TGG - chr5_1:35519772-35519791 None:intergenic 40.0%
CACTGCATTGCGAAAAATTG+TGG - chr5_1:35519858-35519877 None:intergenic 40.0%
GACTGTGCCTATTTACAATC+CGG - chr5_1:35520039-35520058 None:intergenic 40.0%
AGGCACAGTCAAATATACCT+TGG + chr5_1:35520049-35520068 Msa0729060:intron 40.0%
!!! CCAGATTTTAAAGCGGATCT+TGG - chr5_1:35520134-35520153 None:intergenic 40.0%
!! CCAAGATCCGCTTTAAAATC+TGG + chr5_1:35520131-35520150 Msa0729060:intron 40.0%
!! GAACGGTCCAGATTTTAAAG+CGG - chr5_1:35520141-35520160 None:intergenic 40.0%
GGCTGTCAACAAAGATAGAA+CGG - chr5_1:35520158-35520177 None:intergenic 40.0%
GTGTCTAACACTCACACATT+TGG - chr5_1:35520212-35520231 None:intergenic 40.0%
AATGTGTGAGTGTTAGACAC+CGG + chr5_1:35520212-35520231 Msa0729060:intron 40.0%
TGTTAGACACCGGTAAATGT+CGG + chr5_1:35520222-35520241 Msa0729060:intron 40.0%
! GTTTTGTGTCCGACATTTAC+CGG - chr5_1:35520234-35520253 None:intergenic 40.0%
! CTTTGTCGAATTAGTTTCGC+TGG - chr5_1:35520385-35520404 None:intergenic 40.0%
GCAGCAGACATAATACGAAA+AGG + chr5_1:35520415-35520434 Msa0729060:CDS 40.0%
CCAGGAAGTTGAACATTTGT+TGG - chr5_1:35520562-35520581 None:intergenic 40.0%
CCAACAAATGTTCAACTTCC+TGG + chr5_1:35520559-35520578 Msa0729060:CDS 40.0%
TATGCTCCTCTTATTCGTGA+CGG + chr5_1:35520649-35520668 Msa0729060:CDS 40.0%
AAGATTGTTGACACTTTCCC+TGG + chr5_1:35520772-35520791 Msa0729060:CDS 40.0%
!! ACTTACCAATGGATTGACCA+GGG - chr5_1:35520792-35520811 None:intergenic 40.0%
!! AACTTACCAATGGATTGACC+AGG - chr5_1:35520793-35520812 None:intergenic 40.0%
TCTAGAAGGGAACTTACCAA+TGG - chr5_1:35520803-35520822 None:intergenic 40.0%
! CAGATTTCTTTGGTGCACTT+AGG + chr5_1:35521066-35521085 Msa0729060:intron 40.0%
! GTGTTGGCATTGAAACCATT+GGG + chr5_1:35521129-35521148 Msa0729060:CDS 40.0%
!! GTTCACAAGCTTTTTCCCAA+TGG - chr5_1:35521147-35521166 None:intergenic 40.0%
AAGCTTGTGAACTCCAAAGA+AGG + chr5_1:35521155-35521174 Msa0729060:CDS 40.0%
AAAAGTTGGAGGTCCTTCTT+TGG - chr5_1:35521171-35521190 None:intergenic 40.0%
!! TTGGGTTGATCAAAAGTTGG+AGG - chr5_1:35521182-35521201 None:intergenic 40.0%
TGATCAACCCAAGATGACTT+TGG + chr5_1:35521190-35521209 Msa0729060:CDS 40.0%
CAGTTTCTCCAAAGTCATCT+TGG - chr5_1:35521201-35521220 None:intergenic 40.0%
! GATGACTTTGGAGAAACTGT+TGG + chr5_1:35521202-35521221 Msa0729060:CDS 40.0%
TTGGAGAAACTGTTGGAGTA+TGG + chr5_1:35521209-35521228 Msa0729060:CDS 40.0%
TTGGCAGACAAGTATTTGGA+AGG + chr5_1:35521275-35521294 Msa0729060:CDS 40.0%
TGGCAGACAAGTATTTGGAA+GGG + chr5_1:35521276-35521295 Msa0729060:CDS 40.0%
ATTGGAAGGAGAAAGATGCA+AGG + chr5_1:35521601-35521620 Msa0729060:intron 40.0%
CTTCGACCTAACACATTGAA+CGG + chr5_1:35521663-35521682 Msa0729060:intron 40.0%
GTCCTTTAATGTGTACGATC+AGG + chr5_1:35521709-35521728 Msa0729060:intron 40.0%
TGCCTGATCGTACACATTAA+AGG - chr5_1:35521714-35521733 None:intergenic 40.0%
ATTATAGGGACTAGGTACCA+AGG + chr5_1:35522156-35522175 Msa0729060:intron 40.0%
GTAAGTATTCCTGTTCCTGA+AGG + chr5_1:35522425-35522444 Msa0729060:CDS 40.0%
CATCATCACTTCTAGCAGTT+GGG - chr5_1:35522481-35522500 None:intergenic 40.0%
GGTGAGCAAATTTGTCCAGA+GGG - chr5_1:35517862-35517881 None:intergenic 45.0%
AATACAACGCAACACAGCCA+TGG + chr5_1:35517916-35517935 Msa0729060:exon 45.0%
CAGTTGAGCTTGAATAGCTC+TGG + chr5_1:35518593-35518612 Msa0729060:CDS 45.0%
CTTTGTGTTTGGAAACCTCG+AGG - chr5_1:35518675-35518694 None:intergenic 45.0%
CTCGAGGTTTCCAAACACAA+AGG + chr5_1:35518673-35518692 Msa0729060:CDS 45.0%
GCAAGCAAACTGACAAAGAC+AGG + chr5_1:35518741-35518760 Msa0729060:CDS 45.0%
AGCAAACTGACAAAGACAGG+TGG + chr5_1:35518744-35518763 Msa0729060:CDS 45.0%
ACAAGACATCACAAGAGGGA+AGG + chr5_1:35518799-35518818 Msa0729060:CDS 45.0%
CAAGACATCACAAGAGGGAA+GGG + chr5_1:35518800-35518819 Msa0729060:CDS 45.0%
!! GCGCTGGTTCATAGTTCAAT+TGG + chr5_1:35519055-35519074 Msa0729060:intron 45.0%
GTACAACCTTGACAACACCA+TGG + chr5_1:35519172-35519191 Msa0729060:CDS 45.0%
AACCTTGACAACACCATGGA+TGG + chr5_1:35519176-35519195 Msa0729060:CDS 45.0%
!! AACCATCCATGGTGTTGTCA+AGG - chr5_1:35519181-35519200 None:intergenic 45.0%
AGGCAGAGTCAAGAAGTTCT+TGG - chr5_1:35519249-35519268 None:intergenic 45.0%
CCCCAGATACCAAGAATTAG+AGG - chr5_1:35519556-35519575 None:intergenic 45.0%
CTAATTCTTGGTATCTGGGG+AGG + chr5_1:35519556-35519575 Msa0729060:CDS 45.0%
TAGCAAAGACAAGCTCAGCT+TGG - chr5_1:35519603-35519622 None:intergenic 45.0%
GTAACCTCATATGTCGGATC+CGG + chr5_1:35520017-35520036 Msa0729060:intron 45.0%
GTCGGATCCGGATTGTAAAT+AGG + chr5_1:35520029-35520048 Msa0729060:intron 45.0%
TGATCTTGATTGGACGACCA+AGG - chr5_1:35520069-35520088 None:intergenic 45.0%
GTCGTCCAATCAAGATCAGA+CGG + chr5_1:35520071-35520090 Msa0729060:intron 45.0%
CTAGACCGTCTGATCTTGAT+TGG - chr5_1:35520079-35520098 None:intergenic 45.0%
CTCCAGCACTCATCATGATA+GGG - chr5_1:35520336-35520355 None:intergenic 45.0%
TCTCCAGCACTCATCATGAT+AGG - chr5_1:35520337-35520356 None:intergenic 45.0%
GAGCTAGAAAGTGGAAATGC+AGG + chr5_1:35520355-35520374 Msa0729060:CDS 45.0%
CGTGTGCCTATCATTGTTAC+TGG + chr5_1:35520607-35520626 Msa0729060:CDS 45.0%
ATACGACCGTCACGAATAAG+AGG - chr5_1:35520658-35520677 None:intergenic 45.0%
TCTTATTCGTGACGGTCGTA+TGG + chr5_1:35520657-35520676 Msa0729060:CDS 45.0%
CCAATACGATCCTCTCTTGT+AGG - chr5_1:35520700-35520719 None:intergenic 45.0%
CCTACAAGAGAGGATCGTAT+TGG + chr5_1:35520697-35520716 Msa0729060:CDS 45.0%
ACTTTCCCTGGTCAATCCAT+TGG + chr5_1:35520784-35520803 Msa0729060:CDS 45.0%
!! GAAGTGAGAAAGTGGATTGC+TGG + chr5_1:35521107-35521126 Msa0729060:CDS 45.0%
!! AGAAAGTGGATTGCTGGTGT+TGG + chr5_1:35521113-35521132 Msa0729060:CDS 45.0%
!! GGTGTTGGCATTGAAACCAT+TGG + chr5_1:35521128-35521147 Msa0729060:CDS 45.0%
GGCAGACAAGTATTTGGAAG+GGG + chr5_1:35521277-35521296 Msa0729060:CDS 45.0%
TGTGTACGATCAGGCACAAT+CGG + chr5_1:35521718-35521737 Msa0729060:intron 45.0%
TCCTGTTCCTGAAGGTTGTA+CGG + chr5_1:35522433-35522452 Msa0729060:CDS 45.0%
TTTGGATCCGTACAACCTTC+AGG - chr5_1:35522443-35522462 None:intergenic 45.0%
!!! GGGTCGAAGTTTTTGGCATT+TGG - chr5_1:35522461-35522480 None:intergenic 45.0%
! AGCAGTTGGGTCGAAGTTTT+TGG - chr5_1:35522468-35522487 None:intergenic 45.0%
CCATCATCACTTCTAGCAGT+TGG - chr5_1:35522482-35522501 None:intergenic 45.0%
CCAACTGCTAGAAGTGATGA+TGG + chr5_1:35522479-35522498 Msa0729060:CDS 45.0%
!!! TTTTTTAAATCTAAAATATT+TGG - chr5_1:35520110-35520129 None:intergenic 5.0%
GGGTGAGCAAATTTGTCCAG+AGG - chr5_1:35517863-35517882 None:intergenic 50.0%
! AGCTCTAACAGCTGAGACTG+AGG - chr5_1:35517945-35517964 None:intergenic 50.0%
TCAGCTGTTAGAGCTGTCAG+TGG + chr5_1:35517950-35517969 Msa0729060:CDS 50.0%
GCAAGGACCGACTAATCTAG+CGG + chr5_1:35518266-35518285 Msa0729060:intron 50.0%
! GACTGGTCCGCTAGATTAGT+CGG - chr5_1:35518276-35518295 None:intergenic 50.0%
! TAATCTAGCGGACCAGTCCA+TGG + chr5_1:35518278-35518297 Msa0729060:intron 50.0%
CACATGTGTCAGTAGCGTGT+TGG - chr5_1:35518474-35518493 None:intergenic 50.0%
ACTGACAAAGACAGGTGGAG+AGG + chr5_1:35518749-35518768 Msa0729060:CDS 50.0%
CAAAGACAGGTGGAGAGGTT+TGG + chr5_1:35518754-35518773 Msa0729060:CDS 50.0%
CATCACAAGAGGGAAGGGTT+TGG + chr5_1:35518805-35518824 Msa0729060:CDS 50.0%
TTCCAAGCACCACAAGATGC+TGG + chr5_1:35518839-35518858 Msa0729060:CDS 50.0%
TTCCAGCATCTTGTGGTGCT+TGG - chr5_1:35518844-35518863 None:intergenic 50.0%
! TGGTCTTGCCGAATCAGTGT+CGG - chr5_1:35518978-35518997 None:intergenic 50.0%
!! ACTGATTCGGCAAGACCACT+AGG + chr5_1:35518980-35518999 Msa0729060:intron 50.0%
TCGGTTGAAGCATGACCTAG+TGG - chr5_1:35518998-35519017 None:intergenic 50.0%
AATTGAACCGTAGACAGCGC+TGG + chr5_1:35519039-35519058 Msa0729060:intron 50.0%
CTATGAACCAGCGCTGTCTA+CGG - chr5_1:35519049-35519068 None:intergenic 50.0%
GTGGTGGTCACCATGTATGA+TGG + chr5_1:35519141-35519160 Msa0729060:intron 50.0%
CTTGGTATCTGGGGAGGTAA+AGG + chr5_1:35519562-35519581 Msa0729060:CDS 50.0%
ATCTGGGGAGGTAAAGGTCA+AGG + chr5_1:35519568-35519587 Msa0729060:CDS 50.0%
GCTATGTGTCAGCTTGTGTC+TGG - chr5_1:35519960-35519979 None:intergenic 50.0%
CAATCCGGATCCGACATATG+AGG - chr5_1:35520024-35520043 None:intergenic 50.0%
GTGTGACTGCACACGCATAT+CGG - chr5_1:35520179-35520198 None:intergenic 50.0%
AGCACTCATCATGATAGGGC+TGG - chr5_1:35520332-35520351 None:intergenic 50.0%
AGCCCTATCATGATGAGTGC+TGG + chr5_1:35520331-35520350 Msa0729060:intron 50.0%
! AGTGCTGGAGAGCTAGAAAG+TGG + chr5_1:35520346-35520365 Msa0729060:CDS 50.0%
AACGATCTTGATGCAGGAGC+CGG + chr5_1:35520460-35520479 Msa0729060:CDS 50.0%
TGTTGTTCCACCCATACGAC+CGG - chr5_1:35520482-35520501 None:intergenic 50.0%
CTATTGGGCACCTACAAGAG+AGG + chr5_1:35520687-35520706 Msa0729060:CDS 50.0%
GAGTCAACAGTCGATGTGTC+TGG - chr5_1:35520916-35520935 None:intergenic 50.0%
TATTTGGAAGGGGCTGCTCT+TGG + chr5_1:35521287-35521306 Msa0729060:CDS 50.0%
TCCGTACAACCTTCAGGAAC+AGG - chr5_1:35522437-35522456 None:intergenic 50.0%
AGCTGAGACTGAGGCAACCA+TGG - chr5_1:35517936-35517955 None:intergenic 55.0%
GGTCTTGCCGAATCAGTGTC+GGG - chr5_1:35518977-35518996 None:intergenic 55.0%
TGATGCAGGAGCCGGTCGTA+TGG + chr5_1:35520468-35520487 Msa0729060:CDS 60.0%
GATGCAGGAGCCGGTCGTAT+GGG + chr5_1:35520469-35520488 Msa0729060:CDS 60.0%
GCAGGAGCCGGTCGTATGGG+TGG + chr5_1:35520472-35520491 Msa0729060:CDS 70.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 35517818 35522793 35517818 ID=Msa0729060;Name=Msa0729060
chr5_1 mRNA 35517818 35522793 35517818 ID=Msa0729060-mRNA-1;Parent=Msa0729060;Name=Msa0729060-mRNA-1;_AED=0.01;_eAED=0.01;_QI=117|0.83|0.85|1|1|1|7|267|483
chr5_1 exon 35517818 35517979 35517818 ID=Msa0729060-mRNA-1:exon:10974;Parent=Msa0729060-mRNA-1
chr5_1 exon 35518575 35518915 35518575 ID=Msa0729060-mRNA-1:exon:10975;Parent=Msa0729060-mRNA-1
chr5_1 exon 35519172 35519277 35519172 ID=Msa0729060-mRNA-1:exon:10976;Parent=Msa0729060-mRNA-1
chr5_1 exon 35519550 35519635 35519550 ID=Msa0729060-mRNA-1:exon:10977;Parent=Msa0729060-mRNA-1
chr5_1 exon 35520333 35520805 35520333 ID=Msa0729060-mRNA-1:exon:10978;Parent=Msa0729060-mRNA-1
chr5_1 exon 35521069 35521350 35521069 ID=Msa0729060-mRNA-1:exon:10979;Parent=Msa0729060-mRNA-1
chr5_1 exon 35522408 35522793 35522408 ID=Msa0729060-mRNA-1:exon:10980;Parent=Msa0729060-mRNA-1
chr5_1 five_prime_UTR 35517818 35517934 35517818 ID=Msa0729060-mRNA-1:five_prime_utr;Parent=Msa0729060-mRNA-1
chr5_1 CDS 35517935 35517979 35517935 ID=Msa0729060-mRNA-1:cds;Parent=Msa0729060-mRNA-1
chr5_1 CDS 35518575 35518915 35518575 ID=Msa0729060-mRNA-1:cds;Parent=Msa0729060-mRNA-1
chr5_1 CDS 35519172 35519277 35519172 ID=Msa0729060-mRNA-1:cds;Parent=Msa0729060-mRNA-1
chr5_1 CDS 35519550 35519635 35519550 ID=Msa0729060-mRNA-1:cds;Parent=Msa0729060-mRNA-1
chr5_1 CDS 35520333 35520805 35520333 ID=Msa0729060-mRNA-1:cds;Parent=Msa0729060-mRNA-1
chr5_1 CDS 35521069 35521350 35521069 ID=Msa0729060-mRNA-1:cds;Parent=Msa0729060-mRNA-1
chr5_1 CDS 35522408 35522526 35522408 ID=Msa0729060-mRNA-1:cds;Parent=Msa0729060-mRNA-1
chr5_1 three_prime_UTR 35522527 35522793 35522527 ID=Msa0729060-mRNA-1:three_prime_utr;Parent=Msa0729060-mRNA-1
Gene Sequence

>Msa0729060

ATGGTTGCCTCAGTCTCAGCTGTTAGAGCTGTCAGTGGAACACCAGATAATACTGTGATATTGCAGTTGAGCTTGAATAGCTCTGGAGCAGTAGCTTCAGTTCCAAGTTCATCATTCTTTGGAAGCAGCTTAAAGAAAGTTACCTCGAGGTTTCCAAACACAAAGGTTTCATCTGGAAGTATCAAAATTGTTTGTGCTGAGATTGATGAAAGCAAGCAAACTGACAAAGACAGGTGGAGAGGTTTGGCATATGATATTTCAGATGATCAACAAGACATCACAAGAGGGAAGGGTTTGGTTGATACAGTTTTCCAAGCACCACAAGATGCTGGAACTCATTATGCAGTCATGAGTTCTTATGAGTACATTAGCACTGGACTTAGACAGTACAACCTTGACAACACCATGGATGGTTTTTACATTGCACCTGCTTTTATGGACAAGCTTGTTGTACACATCACCAAGAACTTCTTGACTCTGCCTAATATCAAGGTTCCTCTAATTCTTGGTATCTGGGGAGGTAAAGGTCAAGGAAAATCTTTCCAAGCTGAGCTTGTCTTTGCTAAGATGGGAATCAACCCTATCATGATGAGTGCTGGAGAGCTAGAAAGTGGAAATGCAGGAGAACCAGCGAAACTAATTCGACAAAGATATAGAGAAGCAGCAGACATAATACGAAAAGGAAAAATGTGTTGTCTCTTCATAAACGATCTTGATGCAGGAGCCGGTCGTATGGGTGGAACAACACAATACACTGTGAACAACCAAATGGTAAATGCAACACTTATGAACATTGCTGATAACCCAACAAATGTTCAACTTCCTGGTATGTATAACAAAGAAGAGAATGCACGTGTGCCTATCATTGTTACTGGTAATGATTTTTCAACATTGTATGCTCCTCTTATTCGTGACGGTCGTATGGAGAAATTCTATTGGGCACCTACAAGAGAGGATCGTATTGGTGTTTGTAAAGGGATTTTTAGACATGATAATGTTCCTGAGGAAGATGTTGTTAAGATTGTTGACACTTTCCCTGGTCAATCCATTGATTTCTTTGGTGCACTTAGGGCAAGAGTATATGATGATGAAGTGAGAAAGTGGATTGCTGGTGTTGGCATTGAAACCATTGGGAAAAAGCTTGTGAACTCCAAAGAAGGACCTCCAACTTTTGATCAACCCAAGATGACTTTGGAGAAACTGTTGGAGTATGGTAACATGCTTGTCCAAGAACAAGAAAATGTGAAGAGAGTTCAATTGGCAGACAAGTATTTGGAAGGGGCTGCTCTTGGTGATGCTAATCAAGATGCTATCAAGAGTGGATCTTACTATGGTAAGGCAGCTCAACAAGTAAGTATTCCTGTTCCTGAAGGTTGTACGGATCCAAATGCCAAAAACTTCGACCCAACTGCTAGAAGTGATGATGGAACATGCTTATACACATTTGAATAA

Protein sequence

>Msa0729060

MVASVSAVRAVSGTPDNTVILQLSLNSSGAVASVPSSSFFGSSLKKVTSRFPNTKVSSGSIKIVCAEIDESKQTDKDRWRGLAYDISDDQQDITRGKGLVDTVFQAPQDAGTHYAVMSSYEYISTGLRQYNLDNTMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGIWGGKGQGKSFQAELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRHDNVPEEDVVKIVDTFPGQSIDFFGALRARVYDDEVRKWIAGVGIETIGKKLVNSKEGPPTFDQPKMTLEKLLEYGNMLVQEQENVKRVQLADKYLEGAALGDANQDAIKSGSYYGKAAQQVSIPVPEGCTDPNAKNFDPTARSDDGTCLYTFE*