Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1231780 | XP_003627044.1 | 95.595 | 454 | 19 | 1 | 1 | 453 | 1 | 454 | 0.0 | 808 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1231780 | G7LGP0 | 95.595 | 454 | 19 | 1 | 1 | 453 | 1 | 454 | 0.0 | 808 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0018920 | Msa1231780 | 0.824159 | 9.385599e-54 | -8.615850e-47 |
| Msa0020540 | Msa1231780 | 0.810714 | 1.004690e-50 | -8.615850e-47 |
| Msa0030070 | Msa1231780 | 0.830915 | 2.243704e-55 | -8.615850e-47 |
| Msa0032980 | Msa1231780 | 0.813596 | 2.362570e-51 | -8.615850e-47 |
| Msa0067380 | Msa1231780 | 0.814686 | 1.357382e-51 | -8.615850e-47 |
| Msa0090440 | Msa1231780 | 0.809573 | 1.769828e-50 | -8.615850e-47 |
| Msa0091350 | Msa1231780 | 0.819118 | 1.373798e-52 | -8.615850e-47 |
| Msa0093860 | Msa1231780 | 0.800543 | 1.372162e-48 | -8.615850e-47 |
| Msa0098410 | Msa1231780 | 0.804672 | 1.930286e-49 | -8.615850e-47 |
| Msa0113410 | Msa1231780 | 0.807297 | 5.413519e-50 | -8.615850e-47 |
| Msa0603410 | Msa1231780 | 0.819842 | 9.392478e-53 | -8.615850e-47 |
| Msa0608350 | Msa1231780 | 0.824788 | 6.675099e-54 | -8.615850e-47 |
| Msa0612410 | Msa1231780 | 0.823237 | 1.542952e-53 | -8.615850e-47 |
| Msa0620500 | Msa1231780 | 0.823670 | 1.222070e-53 | -8.615850e-47 |
| Msa0625620 | Msa1231780 | 0.803153 | 3.993977e-49 | -8.615850e-47 |
| Msa0640800 | Msa1231780 | 0.847251 | 1.301666e-59 | -8.615850e-47 |
| Msa0647440 | Msa1231780 | 0.821479 | 3.951361e-53 | -8.615850e-47 |
| Msa0648760 | Msa1231780 | 0.843079 | 1.747038e-58 | -8.615850e-47 |
| Msa0663290 | Msa1231780 | 0.801428 | 9.046418e-49 | -8.615850e-47 |
| Msa0688620 | Msa1231780 | 0.805694 | 1.179404e-49 | -8.615850e-47 |
| Msa0690320 | Msa1231780 | 0.814992 | 1.161396e-51 | -8.615850e-47 |
| Msa0690740 | Msa1231780 | 0.804898 | 1.731591e-49 | -8.615850e-47 |
| Msa0691270 | Msa1231780 | 0.822262 | 2.601862e-53 | -8.615850e-47 |
| Msa0701250 | Msa1231780 | 0.815631 | 8.373712e-52 | -8.615850e-47 |
| Msa0707260 | Msa1231780 | 0.804967 | 1.675322e-49 | -8.615850e-47 |
| Msa0713920 | Msa1231780 | 0.809802 | 1.580150e-50 | -8.615850e-47 |
| Msa0714520 | Msa1231780 | 0.801992 | 6.931634e-49 | -8.615850e-47 |
| Msa0717900 | Msa1231780 | 0.827867 | 1.233819e-54 | -8.615850e-47 |
| Msa0720280 | Msa1231780 | 0.840067 | 1.086851e-57 | -8.615850e-47 |
| Msa0737130 | Msa1231780 | 0.810307 | 1.230255e-50 | -8.615850e-47 |
| Msa0749190 | Msa1231780 | 0.801712 | 7.911681e-49 | -8.615850e-47 |
| Msa0750520 | Msa1231780 | 0.809477 | 1.855747e-50 | -8.615850e-47 |
| Msa0778600 | Msa1231780 | 0.819514 | 1.116031e-52 | -8.615850e-47 |
| Msa0800660 | Msa1231780 | 0.801207 | 1.003988e-48 | -8.615850e-47 |
| Msa0803140 | Msa1231780 | 0.835181 | 1.948336e-56 | -8.615850e-47 |
| Msa0816080 | Msa1231780 | 0.825416 | 4.744861e-54 | -8.615850e-47 |
| Msa0816230 | Msa1231780 | 0.806502 | 7.973241e-50 | -8.615850e-47 |
| Msa0841500 | Msa1231780 | 0.832557 | 8.832224e-56 | -8.615850e-47 |
| Msa0125590 | Msa1231780 | 0.836283 | 1.024578e-56 | -8.615850e-47 |
| Msa0127340 | Msa1231780 | 0.810013 | 1.423382e-50 | -8.615850e-47 |
| Msa0153210 | Msa1231780 | 0.804508 | 2.088620e-49 | -8.615850e-47 |
| Msa0158900 | Msa1231780 | 0.844415 | 7.666668e-59 | -8.615850e-47 |
| Msa0165830 | Msa1231780 | 0.816660 | 4.931919e-52 | -8.615850e-47 |
| Msa0170070 | Msa1231780 | 0.848026 | 7.966169e-60 | -8.615850e-47 |
| Msa0186180 | Msa1231780 | 0.824170 | 9.331073e-54 | -8.615850e-47 |
| Msa0186360 | Msa1231780 | 0.804640 | 1.960085e-49 | -8.615850e-47 |
| Msa0204970 | Msa1231780 | 0.814195 | 1.743068e-51 | -8.615850e-47 |
| Msa0225800 | Msa1231780 | 0.805046 | 1.612874e-49 | -8.615850e-47 |
| Msa1231780 | Msa1242960 | 0.805506 | 1.291983e-49 | -8.615850e-47 |
| Msa1231780 | Msa1254420 | 0.819303 | 1.246429e-52 | -8.615850e-47 |
| Msa1231780 | Msa1254540 | 0.815119 | 1.088211e-51 | -8.615850e-47 |
| Msa1231780 | Msa1261050 | 0.800696 | 1.277076e-48 | -8.615850e-47 |
| Msa1231780 | Msa1263740 | 0.804365 | 2.236955e-49 | -8.615850e-47 |
| Msa1231780 | Msa1267930 | 0.814973 | 1.172765e-51 | -8.615850e-47 |
| Msa1231780 | Msa1293610 | 0.807873 | 4.086002e-50 | -8.615850e-47 |
| Msa1231780 | Msa1294460 | 0.816998 | 4.142112e-52 | -8.615850e-47 |
| Msa1231780 | Msa1294790 | 0.834331 | 3.188800e-56 | -8.615850e-47 |
| Msa1231780 | Msa1300460 | 0.807394 | 5.163384e-50 | -8.615850e-47 |
| Msa1231780 | Msa1305920 | 0.809859 | 1.536074e-50 | -8.615850e-47 |
| Msa1231780 | Msa1332950 | 0.806483 | 8.046698e-50 | -8.615850e-47 |
| Msa1231780 | Msa1339230 | 0.835035 | 2.121359e-56 | -8.615850e-47 |
| Msa1231780 | Msa1381470 | 0.834163 | 3.513615e-56 | -8.615850e-47 |
| Msa1231780 | Msa1381800 | 0.808750 | 2.656100e-50 | -8.615850e-47 |
| Msa1231780 | Msa1387500 | 0.823792 | 1.144336e-53 | -8.615850e-47 |
| Msa1231780 | Msa1390210 | 0.806603 | 7.591427e-50 | -8.615850e-47 |
| Msa1231780 | Msa1393560 | 0.828889 | 6.994229e-55 | -8.615850e-47 |
| Msa1231780 | Msa1399190 | 0.833348 | 5.616092e-56 | -8.615850e-47 |
| Msa1231780 | Msa1406720 | 0.815727 | 7.969797e-52 | -8.615850e-47 |
| Msa1231780 | Msa1410190 | 0.830319 | 3.140923e-55 | -8.615850e-47 |
| Msa1231780 | Msa1424370 | 0.807735 | 4.370533e-50 | -8.615850e-47 |
| Msa1231780 | Msa1426320 | 0.813285 | 2.764938e-51 | -8.615850e-47 |
| Msa1231780 | Msa1434640 | 0.809378 | 1.949478e-50 | -8.615850e-47 |
| Msa1231780 | Msa1435100 | 0.833101 | 6.470224e-56 | -8.615850e-47 |
| Msa1231780 | Msa1439730 | 0.838559 | 2.676547e-57 | -8.615850e-47 |
| Msa0373170 | Msa1231780 | 0.853660 | 2.063063e-61 | -8.615850e-47 |
| Msa0382230 | Msa1231780 | 0.839690 | 1.362559e-57 | -8.615850e-47 |
| Msa0412130 | Msa1231780 | 0.829808 | 4.182999e-55 | -8.615850e-47 |
| Msa0415820 | Msa1231780 | 0.801884 | 7.292953e-49 | -8.615850e-47 |
| Msa0420670 | Msa1231780 | 0.804683 | 1.920750e-49 | -8.615850e-47 |
| Msa0421750 | Msa1231780 | 0.845663 | 3.528109e-59 | -8.615850e-47 |
| Msa0433760 | Msa1231780 | 0.828173 | 1.041563e-54 | -8.615850e-47 |
| Msa0456670 | Msa1231780 | 0.822114 | 2.816200e-53 | -8.615850e-47 |
| Msa0466520 | Msa1231780 | 0.819682 | 1.021862e-52 | -8.615850e-47 |
| Msa0467690 | Msa1231780 | 0.852190 | 5.431749e-61 | -8.615850e-47 |
| Msa0477630 | Msa1231780 | 0.820409 | 6.965466e-53 | -8.615850e-47 |
| Msa0478140 | Msa1231780 | 0.838087 | 3.541936e-57 | -8.615850e-47 |
| Msa0478200 | Msa1231780 | 0.831564 | 1.554450e-55 | -8.615850e-47 |
| Msa1000780 | Msa1231780 | 0.833807 | 4.313719e-56 | -8.615850e-47 |
| Msa1008670 | Msa1231780 | 0.833611 | 4.828795e-56 | -8.615850e-47 |
| Msa1008680 | Msa1231780 | 0.811027 | 8.596496e-51 | -8.615850e-47 |
| Msa1071410 | Msa1231780 | 0.807884 | 4.063906e-50 | -8.615850e-47 |
| Msa1076020 | Msa1231780 | 0.802123 | 6.513738e-49 | -8.615850e-47 |
| Msa1078860 | Msa1231780 | 0.840517 | 8.289077e-58 | -8.615850e-47 |
| Msa1078990 | Msa1231780 | 0.842773 | 2.107486e-58 | -8.615850e-47 |
| Msa0265310 | Msa1231780 | 0.800529 | 1.380789e-48 | -8.615850e-47 |
| Msa0281540 | Msa1231780 | 0.800061 | 1.719268e-48 | -8.615850e-47 |
| Msa0320250 | Msa1231780 | 0.818079 | 2.363366e-52 | -8.615850e-47 |
| Msa0320270 | Msa1231780 | 0.815788 | 7.724804e-52 | -8.615850e-47 |
| Msa0320290 | Msa1231780 | 0.822318 | 2.526292e-53 | -8.615850e-47 |
| Msa0320580 | Msa1231780 | 0.812529 | 4.049735e-51 | -8.615850e-47 |
| Msa0344110 | Msa1231780 | 0.815529 | 8.822414e-52 | -8.615850e-47 |
| Msa1148630 | Msa1231780 | 0.809401 | 1.927478e-50 | -8.615850e-47 |
| Msa1149450 | Msa1231780 | 0.825951 | 3.542457e-54 | -8.615850e-47 |
| Msa1159590 | Msa1231780 | 0.813360 | 2.663067e-51 | -8.615850e-47 |
| Msa1169170 | Msa1231780 | 0.835796 | 1.361687e-56 | -8.615850e-47 |
| Msa1169690 | Msa1231780 | 0.837430 | 5.223816e-57 | -8.615850e-47 |
| Msa1180700 | Msa1231780 | 0.830027 | 3.699787e-55 | -8.615850e-47 |
| Msa1188790 | Msa1231780 | 0.829787 | 4.233051e-55 | -8.615850e-47 |
| Msa1190390 | Msa1231780 | 0.816645 | 4.971308e-52 | -8.615850e-47 |
| Msa1191000 | Msa1231780 | 0.807028 | 6.172540e-50 | -8.615850e-47 |
| Msa1213830 | Msa1231780 | 0.804988 | 1.657986e-49 | -8.615850e-47 |
| Msa1214350 | Msa1231780 | 0.809894 | 1.509842e-50 | -8.615850e-47 |
| Msa1215980 | Msa1231780 | 0.821318 | 4.302706e-53 | -8.615850e-47 |
| Msa0503990 | Msa1231780 | 0.800581 | 1.347703e-48 | -8.615850e-47 |
| Msa0506540 | Msa1231780 | 0.800330 | 1.516390e-48 | -8.615850e-47 |
| Msa0506880 | Msa1231780 | 0.804272 | 2.339144e-49 | -8.615850e-47 |
| Msa0507810 | Msa1231780 | 0.819455 | 1.151122e-52 | -8.615850e-47 |
| Msa0507920 | Msa1231780 | 0.819797 | 9.617594e-53 | -8.615850e-47 |
| Msa0512530 | Msa1231780 | 0.802754 | 4.828246e-49 | -8.615850e-47 |
| Msa0514020 | Msa1231780 | 0.849576 | 2.959105e-60 | -8.615850e-47 |
| Msa0520680 | Msa1231780 | 0.847356 | 1.217890e-59 | -8.615850e-47 |
| Msa0521680 | Msa1231780 | 0.836701 | 8.017753e-57 | -8.615850e-47 |
| Msa0523380 | Msa1231780 | 0.804057 | 2.593632e-49 | -8.615850e-47 |
| Msa0527850 | Msa1231780 | 0.815131 | 1.081885e-51 | -8.615850e-47 |
| Msa0541740 | Msa1231780 | 0.816725 | 4.768252e-52 | -8.615850e-47 |
| Msa0544410 | Msa1231780 | 0.836657 | 8.230423e-57 | -8.615850e-47 |
| Msa0544430 | Msa1231780 | 0.818165 | 2.259770e-52 | -8.615850e-47 |
| Msa0548000 | Msa1231780 | 0.814580 | 1.433048e-51 | -8.615850e-47 |
| Msa0554300 | Msa1231780 | 0.843240 | 1.582053e-58 | -8.615850e-47 |
| Msa0561560 | Msa1231780 | 0.802902 | 4.499401e-49 | -8.615850e-47 |
| Msa0563900 | Msa1231780 | 0.827900 | 1.211748e-54 | -8.615850e-47 |
| Msa0564980 | Msa1231780 | 0.811325 | 7.408009e-51 | -8.615850e-47 |
| Msa0572830 | Msa1231780 | 0.839021 | 2.032888e-57 | -8.615850e-47 |
| Msa0582460 | Msa1231780 | 0.809822 | 1.564744e-50 | -8.615850e-47 |
| Msa0586200 | Msa1231780 | 0.815608 | 8.473829e-52 | -8.615850e-47 |
| Msa0900090 | Msa1231780 | 0.824203 | 9.166392e-54 | -8.615850e-47 |
| Msa0909760 | Msa1231780 | 0.802202 | 6.273774e-49 | -8.615850e-47 |
| Msa0926310 | Msa1231780 | 0.828156 | 1.051635e-54 | -8.615850e-47 |
| Msa0931310 | Msa1231780 | 0.801683 | 8.020640e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1231780 | MtrunA17_Chr8g0340711 | 95.595 | 454 | 19 | 1 | 1 | 453 | 1 | 454 | 0.0 | 808 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1231780 | AT4G12540.2 | 36.226 | 461 | 220 | 14 | 20 | 453 | 24 | 437 | 7.89e-67 | 221 |
| Msa1231780 | AT4G12540.5 | 36.226 | 461 | 220 | 14 | 20 | 453 | 24 | 437 | 7.89e-67 | 221 |
| Msa1231780 | AT4G12540.3 | 36.226 | 461 | 220 | 14 | 20 | 453 | 17 | 430 | 1.13e-66 | 220 |
| Msa1231780 | AT4G12540.1 | 34.728 | 478 | 221 | 15 | 20 | 453 | 24 | 454 | 8.56e-63 | 211 |
| Msa1231780 | AT4G12540.4 | 36.147 | 462 | 216 | 15 | 24 | 453 | 15 | 429 | 1.48e-62 | 209 |
Find 95 sgRNAs with CRISPR-Local
Find 155 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACTCAGTGAAATCTAATT+TGG | 0.166349 | 8_2:+8058931 | None:intergenic |
| GAAAGTGAACTTTGTAATTT+TGG | 0.178876 | 8_2:+8059175 | None:intergenic |
| CTCCTTCGCCTCTTGTTTCA+TGG | 0.201608 | 8_2:-8059054 | Msa1231780:CDS |
| AGAGAAAGGGCAGGCTTTAT+TGG | 0.223544 | 8_2:+8058857 | None:intergenic |
| TCAAGCAAAACACAAGATTT+TGG | 0.237449 | 8_2:+8058719 | None:intergenic |
| CACACGACATATTTCAGATA+TGG | 0.242872 | 8_2:+8058694 | None:intergenic |
| GCAAGCAAATAATATCTTAT+TGG | 0.247563 | 8_2:-8057900 | Msa1231780:three_prime_UTR |
| ATACTTTGAAGAAGGAATTA+TGG | 0.247944 | 8_2:-8058097 | Msa1231780:CDS |
| TGAAATGTTGTCGCGGTTAA+AGG | 0.258164 | 8_2:-8059852 | Msa1231780:intron |
| AATAATGATTCAGTGCTTTA+CGG | 0.286271 | 8_2:-8058899 | Msa1231780:CDS |
| GATACTAATGTAGTCTCTTT+AGG | 0.311138 | 8_2:+8059076 | None:intergenic |
| GATAACAATGATTTCGATAA+TGG | 0.320197 | 8_2:+8058977 | None:intergenic |
| GTAAAGCACTGAATCATTAT+TGG | 0.331032 | 8_2:+8058901 | None:intergenic |
| TCAGAAGATTCTGAAGCTTC+TGG | 0.335637 | 8_2:-8058614 | Msa1231780:CDS |
| TCCTTTCCAATTGCTGACTT+TGG | 0.336920 | 8_2:+8058527 | None:intergenic |
| GAAAGGGTTTCTTGACCTAT+TGG | 0.342475 | 8_2:-8058006 | Msa1231780:CDS |
| TACTTTGAAGAAGGAATTAT+GGG | 0.344921 | 8_2:-8058096 | Msa1231780:CDS |
| CCTATTCTAGTTCCACTTTG+TGG | 0.354961 | 8_2:-8057810 | Msa1231780:three_prime_UTR |
| TTGTCCAACGATTTCTCATC+AGG | 0.375325 | 8_2:+8058440 | None:intergenic |
| GGTTTGTGGTTGGTGTGGTT+TGG | 0.378722 | 8_2:+8058952 | None:intergenic |
| TTTGGCTTGATTATGACCTT+TGG | 0.381837 | 8_2:+8058328 | None:intergenic |
| TCTTTCCACTCTTCTTCATC+AGG | 0.384489 | 8_2:-8060145 | Msa1231780:intron |
| CGATGGTGTGACGCAGGGTT+TGG | 0.387486 | 8_2:-8058588 | Msa1231780:CDS |
| TGTGTTCCAAAGTCAGCAAT+TGG | 0.392723 | 8_2:-8058533 | Msa1231780:CDS |
| TAATGAACTCCAACAGGAAA+AGG | 0.401395 | 8_2:+8058644 | None:intergenic |
| CAATGTTTCCCCATGAGATC+TGG | 0.404517 | 8_2:+8058554 | None:intergenic |
| GTTTGAAACTTAGACTCAAA+TGG | 0.405729 | 8_2:+8058047 | None:intergenic |
| GGAGGTGAGGTAAGCCAAAC+AGG | 0.412175 | 8_2:+8058488 | None:intergenic |
| AAGAAGAGTGTAAGCAAAGA+GGG | 0.415838 | 8_2:-8059911 | Msa1231780:CDS |
| CCACAAAGTGGAACTAGAAT+AGG | 0.422237 | 8_2:+8057810 | None:intergenic |
| AGTTCCACTTTGTGGACAAC+AGG | 0.424005 | 8_2:-8057802 | Msa1231780:three_prime_UTR |
| GAACTAGAATAGGATGCATC+AGG | 0.434251 | 8_2:+8057820 | None:intergenic |
| AATAAAGCCTGCCCTTTCTC+TGG | 0.439735 | 8_2:-8058855 | Msa1231780:CDS |
| ATGTTGAAGCATCACCTGTT+TGG | 0.440053 | 8_2:-8058502 | Msa1231780:CDS |
| CAAATTAGATTTCACTGAGT+TGG | 0.440495 | 8_2:-8058930 | Msa1231780:CDS |
| ACACGACATATTTCAGATAT+GGG | 0.441396 | 8_2:+8058695 | None:intergenic |
| GTGAAATCTAATTTGGTTTG+TGG | 0.455967 | 8_2:+8058938 | None:intergenic |
| GAGTGGAAAGATCGGAATGA+AGG | 0.459544 | 8_2:+8060157 | None:intergenic |
| AATCTAATTTGGTTTGTGGT+TGG | 0.462236 | 8_2:+8058942 | None:intergenic |
| CCTCTTCACTCACCAGAGAA+AGG | 0.463469 | 8_2:+8058843 | None:intergenic |
| TCACTGTAATGAACTCCAAC+AGG | 0.463669 | 8_2:+8058638 | None:intergenic |
| ATTAGATGCTTCTTCAAACT+TGG | 0.464517 | 8_2:+8058073 | None:intergenic |
| GATCGGAATGAAGGAGAGTG+AGG | 0.469677 | 8_2:+8060166 | None:intergenic |
| CACAGGAAGCTTCTTCCAAT+AGG | 0.469810 | 8_2:+8057991 | None:intergenic |
| AGGGCAGGCTTTATTGGAGT+TGG | 0.475554 | 8_2:+8058863 | None:intergenic |
| CAATAAATTGAATGTGGAAG+AGG | 0.483861 | 8_2:-8058357 | Msa1231780:CDS |
| AATGAACTCCAACAGGAAAA+GGG | 0.490414 | 8_2:+8058645 | None:intergenic |
| ATTGACTTGTTGCTTCAGAA+TGG | 0.494173 | 8_2:+8058376 | None:intergenic |
| TGGCAGCGATGGTGTGACGC+AGG | 0.497686 | 8_2:-8058594 | Msa1231780:CDS |
| GCATGAATTGATTTCTTCGC+CGG | 0.499731 | 8_2:-8058804 | Msa1231780:CDS |
| CTCTTCACTCACCAGAGAAA+GGG | 0.500227 | 8_2:+8058844 | None:intergenic |
| TCAGTAAGAGTTCTCAGAAA+GGG | 0.502446 | 8_2:-8058022 | Msa1231780:CDS |
| GTGTGGGTAATGATAAGTTT+CGG | 0.503235 | 8_2:-8058676 | Msa1231780:CDS |
| GAAATCGTTGGACAAGGAAA+AGG | 0.507749 | 8_2:-8058432 | Msa1231780:CDS |
| CCTTTCTCTGGTGAGTGAAG+AGG | 0.513821 | 8_2:-8058843 | Msa1231780:CDS |
| AATGATTTCGATAATGGAAG+TGG | 0.516836 | 8_2:+8058983 | None:intergenic |
| CGCCATGAAACAAGAGGCGA+AGG | 0.518234 | 8_2:+8059052 | None:intergenic |
| TTCACTTTCATCAACTTCAG+TGG | 0.526000 | 8_2:-8059161 | Msa1231780:CDS |
| GTTGAAGTATCCAGATCTCA+TGG | 0.526419 | 8_2:-8058564 | Msa1231780:CDS |
| TCTGAAGCTTCTGGCAGCGA+TGG | 0.532379 | 8_2:-8058605 | Msa1231780:CDS |
| GGAATGAAGGAGAGTGAGGG+AGG | 0.533569 | 8_2:+8060170 | None:intergenic |
| ATGAAGAAGAGTGGAAAGAT+CGG | 0.534016 | 8_2:+8060149 | None:intergenic |
| ATCGGAATGAAGGAGAGTGA+GGG | 0.539341 | 8_2:+8060167 | None:intergenic |
| GTCAGTAAGAGTTCTCAGAA+AGG | 0.553014 | 8_2:-8058023 | Msa1231780:CDS |
| TGGTGAAAATACTTTGAAGA+AGG | 0.558898 | 8_2:-8058105 | Msa1231780:CDS |
| CATATCTGAAATATGTCGTG+TGG | 0.561959 | 8_2:-8058693 | Msa1231780:CDS |
| ATACAAAGAGGGAAGCGTGC+TGG | 0.568703 | 8_2:-8058125 | Msa1231780:CDS |
| TCACTCACCAGAGAAAGGGC+AGG | 0.573111 | 8_2:+8058848 | None:intergenic |
| AATTTGGTTTGTGGTTGGTG+TGG | 0.575140 | 8_2:+8058947 | None:intergenic |
| GAAGAAGAGTGTAAGCAAAG+AGG | 0.579188 | 8_2:-8059912 | Msa1231780:CDS |
| AGGAGTCATCATATAAAGCA+TGG | 0.581661 | 8_2:+8058760 | None:intergenic |
| AAGCACTGAATCATTATTGG+AGG | 0.583598 | 8_2:+8058904 | None:intergenic |
| ACAAGTCAATAAATTGAATG+TGG | 0.587588 | 8_2:-8058363 | Msa1231780:CDS |
| TTGAAGTATCCAGATCTCAT+GGG | 0.591173 | 8_2:-8058563 | Msa1231780:CDS |
| AGAAACCTGATGAAGAAGAG+TGG | 0.593393 | 8_2:+8060140 | None:intergenic |
| ATTGAAGCGATTCGTTGTTG+CGG | 0.600976 | 8_2:+8060224 | None:intergenic |
| AGTTCCTGTTGTCCACAAAG+TGG | 0.601462 | 8_2:+8057798 | None:intergenic |
| CCTGAAAACACGATACAAAG+AGG | 0.604121 | 8_2:-8058137 | Msa1231780:CDS |
| AGAAGAGTGTAAGCAAAGAG+GGG | 0.609819 | 8_2:-8059910 | Msa1231780:CDS |
| ATGAACTCCAACAGGAAAAG+GGG | 0.611782 | 8_2:+8058646 | None:intergenic |
| GACACCTGATGAGAAATCGT+TGG | 0.616032 | 8_2:-8058444 | Msa1231780:CDS |
| CTGAAAACACGATACAAAGA+GGG | 0.620143 | 8_2:-8058136 | Msa1231780:CDS |
| AACTCCAACAGGAAAAGGGG+TGG | 0.626121 | 8_2:+8058649 | None:intergenic |
| TGATGAGAAATCGTTGGACA+AGG | 0.631692 | 8_2:-8058438 | Msa1231780:CDS |
| TCCAAAGTCAGCAATTGGAA+AGG | 0.633354 | 8_2:-8058528 | Msa1231780:CDS |
| TTAGCACGCCATGAAACAAG+AGG | 0.638632 | 8_2:+8059046 | None:intergenic |
| ATATCTGAAATATGTCGTGT+GGG | 0.639858 | 8_2:-8058692 | Msa1231780:CDS |
| GTGGAAGAGGATATTTCCAA+AGG | 0.646607 | 8_2:-8058344 | Msa1231780:CDS |
| AACTAGAATAGGATGCATCA+GGG | 0.665686 | 8_2:+8057821 | None:intergenic |
| TGAAGTATCCAGATCTCATG+GGG | 0.668354 | 8_2:-8058562 | Msa1231780:CDS |
| TGTTATCAAATGCAGCCATG+GGG | 0.714680 | 8_2:-8059199 | Msa1231780:intron |
| TGTTGTCTGAAATGTTGTCG+CGG | 0.715828 | 8_2:-8059859 | Msa1231780:CDS |
| ATATAGAGAGCACTCCCATG+TGG | 0.723054 | 8_2:-8058166 | Msa1231780:CDS |
| GCTAATTGTACTGTTCAGCG+AGG | 0.740131 | 8_2:-8059028 | Msa1231780:CDS |
| AGTCATCATATAAAGCATGG+AGG | 0.749944 | 8_2:+8058763 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CATTTTTTTTTTTCATTTTA+GGG | - | chr8_2:8058004-8058023 | Msa1231780:CDS | 10.0% |
| !! | TTATTCTATTATAATTACTT+TGG | - | chr8_2:8058043-8058062 | Msa1231780:CDS | 10.0% |
| !!! | TGTTATTTGAATTTTTAGAT+TGG | + | chr8_2:8057810-8057829 | None:intergenic | 15.0% |
| !! | CCTAAAATGAAAAAAAAAAA+TGG | + | chr8_2:8058006-8058025 | None:intergenic | 15.0% |
| !!! | CCATTTTTTTTTTTCATTTT+AGG | - | chr8_2:8058003-8058022 | Msa1231780:CDS | 15.0% |
| !!! | TAGTTTGATTGTTTAATTTT+AGG | - | chr8_2:8058078-8058097 | Msa1231780:CDS | 15.0% |
| !!! | TATTTGAATTTTTAGATTGG+AGG | + | chr8_2:8057807-8057826 | None:intergenic | 20.0% |
| !! | AAACAAACTAAAAAATACAG+CGG | + | chr8_2:8058298-8058317 | None:intergenic | 20.0% |
| !!! | TCATTTTGTAAAACTGTTTT+CGG | - | chr8_2:8058353-8058372 | Msa1231780:CDS | 20.0% |
| !!! | AAGGTAAAATAATTTGTGTT+TGG | - | chr8_2:8058475-8058494 | Msa1231780:CDS | 20.0% |
| !! | TAGTCATTAAATGTATGAAA+AGG | - | chr8_2:8058565-8058584 | Msa1231780:CDS | 20.0% |
| !!! | ATCATCGTTGATTTGTTTTT+GGG | + | chr8_2:8057905-8057924 | None:intergenic | 25.0% |
| !!! | GCTGTATTTTTTAGTTTGTT+TGG | - | chr8_2:8058297-8058316 | Msa1231780:intron | 25.0% |
| !!! | TTTTAGTTTGTTTGGTTTTG+TGG | - | chr8_2:8058305-8058324 | Msa1231780:intron | 25.0% |
| !! | GTCTTTTGTTAGTAATTTCA+TGG | - | chr8_2:8058643-8058662 | Msa1231780:CDS | 25.0% |
| ! | TGACTAACAAAAGAGATATT+CGG | - | chr8_2:8058737-8058756 | Msa1231780:CDS | 25.0% |
| ! | CAAAGATTAAACAACAATCT+TGG | + | chr8_2:8058826-8058845 | None:intergenic | 25.0% |
| !! | GAAAGTGAACTTTGTAATTT+TGG | + | chr8_2:8058930-8058949 | None:intergenic | 25.0% |
| ! | GATAACAATGATTTCGATAA+TGG | + | chr8_2:8059128-8059147 | None:intergenic | 25.0% |
| ! | AATAATGATTCAGTGCTTTA+CGG | - | chr8_2:8059203-8059222 | Msa1231780:intron | 25.0% |
| !!! | CAAAAACTTGTGTTTTGTTA+GGG | - | chr8_2:8059636-8059655 | Msa1231780:intron | 25.0% |
| ! | ACAAGTCAATAAATTGAATG+TGG | - | chr8_2:8059739-8059758 | Msa1231780:intron | 25.0% |
| !!! | TTGGTTACAACAAGATTTTT+TGG | + | chr8_2:8059795-8059814 | None:intergenic | 25.0% |
| !! | AAAAAATCTTGTTGTAACCA+AGG | - | chr8_2:8059794-8059813 | Msa1231780:intron | 25.0% |
| ! | AGCTATAAGGAATATATAAC+AGG | + | chr8_2:8059832-8059851 | None:intergenic | 25.0% |
| !!! | TATATTCCTTATAGCTTGTT+TGG | - | chr8_2:8059836-8059855 | Msa1231780:intron | 25.0% |
| !!! | TTGTGTTTTTTCTTCTTTTC+AGG | - | chr8_2:8059890-8059909 | Msa1231780:CDS | 25.0% |
| !! | ATACTTTGAAGAAGGAATTA+TGG | - | chr8_2:8060005-8060024 | Msa1231780:intron | 25.0% |
| !! | TACTTTGAAGAAGGAATTAT+GGG | - | chr8_2:8060006-8060025 | Msa1231780:intron | 25.0% |
| ! | GCAAGCAAATAATATCTTAT+TGG | - | chr8_2:8060202-8060221 | Msa1231780:CDS | 25.0% |
| !! | TTGAATTTTTAGATTGGAGG+CGG | + | chr8_2:8057804-8057823 | None:intergenic | 30.0% |
| !!! | TCATCGTTGATTTGTTTTTG+GGG | + | chr8_2:8057904-8057923 | None:intergenic | 30.0% |
| !!! | CATCATCGTTGATTTGTTTT+TGG | + | chr8_2:8057906-8057925 | None:intergenic | 30.0% |
| AAAGGTAAAACCCCTAAATT+TGG | - | chr8_2:8058268-8058287 | Msa1231780:intron | 30.0% | |
| GTTGAACACTAATGTATGTT+TGG | - | chr8_2:8058427-8058446 | Msa1231780:CDS | 30.0% | |
| ACTAATGTATGTTTGGTTAG+CGG | - | chr8_2:8058434-8058453 | Msa1231780:CDS | 30.0% | |
| TGGATACATTCTTGTAAAAG+CGG | - | chr8_2:8058495-8058514 | Msa1231780:CDS | 30.0% | |
| GATACTAATGTAGTCTCTTT+AGG | + | chr8_2:8059029-8059048 | None:intergenic | 30.0% | |
| !! | AATGATTTCGATAATGGAAG+TGG | + | chr8_2:8059122-8059141 | None:intergenic | 30.0% |
| !! | AATCTAATTTGGTTTGTGGT+TGG | + | chr8_2:8059163-8059182 | None:intergenic | 30.0% |
| !! | GTGAAATCTAATTTGGTTTG+TGG | + | chr8_2:8059167-8059186 | None:intergenic | 30.0% |
| CAACTCAGTGAAATCTAATT+TGG | + | chr8_2:8059174-8059193 | None:intergenic | 30.0% | |
| CAAATTAGATTTCACTGAGT+TGG | - | chr8_2:8059172-8059191 | Msa1231780:CDS | 30.0% | |
| !! | GTAAAGCACTGAATCATTAT+TGG | + | chr8_2:8059204-8059223 | None:intergenic | 30.0% |
| !! | GTGTCTATTTTAGAAAGATC+CGG | + | chr8_2:8059320-8059339 | None:intergenic | 30.0% |
| ! | TCAAGCAAAACACAAGATTT+TGG | + | chr8_2:8059386-8059405 | None:intergenic | 30.0% |
| ACACGACATATTTCAGATAT+GGG | + | chr8_2:8059410-8059429 | None:intergenic | 30.0% | |
| ! | ATATCTGAAATATGTCGTGT+GGG | - | chr8_2:8059410-8059429 | Msa1231780:intron | 30.0% |
| !! | AACAAAACACAAGTTTTTGG+AGG | + | chr8_2:8059635-8059654 | None:intergenic | 30.0% |
| ! | CCTAACAAAACACAAGTTTT+TGG | + | chr8_2:8059638-8059657 | None:intergenic | 30.0% |
| !! | CCAAAAACTTGTGTTTTGTT+AGG | - | chr8_2:8059635-8059654 | Msa1231780:intron | 30.0% |
| CAATAAATTGAATGTGGAAG+AGG | - | chr8_2:8059745-8059764 | Msa1231780:intron | 30.0% | |
| TGTTAACCAAACAAGCTATA+AGG | + | chr8_2:8059845-8059864 | None:intergenic | 30.0% | |
| !! | TATAGCTTGTTTGGTTAACA+TGG | - | chr8_2:8059845-8059864 | Msa1231780:intron | 30.0% |
| !! | ATAGCTTGTTTGGTTAACAT+GGG | - | chr8_2:8059846-8059865 | Msa1231780:intron | 30.0% |
| !!! | TTCTTTTCAGGTGATTTTGT+TGG | - | chr8_2:8059902-8059921 | Msa1231780:CDS | 30.0% |
| ! | TGGTGAAAATACTTTGAAGA+AGG | - | chr8_2:8059997-8060016 | Msa1231780:intron | 30.0% |
| ATTAGATGCTTCTTCAAACT+TGG | + | chr8_2:8060032-8060051 | None:intergenic | 30.0% | |
| ! | GTTTGAAACTTAGACTCAAA+TGG | + | chr8_2:8060058-8060077 | None:intergenic | 30.0% |
| ! | ATTTTCAGCTTATTCATCAC+AGG | + | chr8_2:8060131-8060150 | None:intergenic | 30.0% |
| ATGAAGAAGAGTGGAAAGAT+CGG | + | chr8_2:8057956-8057975 | None:intergenic | 35.0% | |
| ! | AAGAAGAGTGTAAGCAAAGA+GGG | - | chr8_2:8058191-8058210 | Msa1231780:CDS | 35.0% |
| CTAATGTATGTTTGGTTAGC+GGG | - | chr8_2:8058435-8058454 | Msa1231780:CDS | 35.0% | |
| GGAGAGGAAAATTGAATTGA+AGG | - | chr8_2:8058456-8058475 | Msa1231780:CDS | 35.0% | |
| GGATACATTCTTGTAAAAGC+GGG | - | chr8_2:8058496-8058515 | Msa1231780:CDS | 35.0% | |
| GTGTCTTTACTTGATCAGTT+CGG | + | chr8_2:8058670-8058689 | None:intergenic | 35.0% | |
| TTGTTATCAAATGCAGCCAT+GGG | - | chr8_2:8058902-8058921 | Msa1231780:CDS | 35.0% | |
| TTCACTTTCATCAACTTCAG+TGG | - | chr8_2:8058941-8058960 | Msa1231780:CDS | 35.0% | |
| !! | AAGCACTGAATCATTATTGG+AGG | + | chr8_2:8059201-8059220 | None:intergenic | 35.0% |
| AGTCATCATATAAAGCATGG+AGG | + | chr8_2:8059342-8059361 | None:intergenic | 35.0% | |
| AGGAGTCATCATATAAAGCA+TGG | + | chr8_2:8059345-8059364 | None:intergenic | 35.0% | |
| ! | AGCAAAACACAAGATTTTGG+AGG | + | chr8_2:8059383-8059402 | None:intergenic | 35.0% |
| CACACGACATATTTCAGATA+TGG | + | chr8_2:8059411-8059430 | None:intergenic | 35.0% | |
| ! | CATATCTGAAATATGTCGTG+TGG | - | chr8_2:8059409-8059428 | Msa1231780:intron | 35.0% |
| GTGTGGGTAATGATAAGTTT+CGG | - | chr8_2:8059426-8059445 | Msa1231780:intron | 35.0% | |
| AATGAACTCCAACAGGAAAA+GGG | + | chr8_2:8059460-8059479 | None:intergenic | 35.0% | |
| TAATGAACTCCAACAGGAAA+AGG | + | chr8_2:8059461-8059480 | None:intergenic | 35.0% | |
| ! | TTGAAGTATCCAGATCTCAT+GGG | - | chr8_2:8059539-8059558 | Msa1231780:intron | 35.0% |
| !! | ATTGACTTGTTGCTTCAGAA+TGG | + | chr8_2:8059729-8059748 | None:intergenic | 35.0% |
| !! | TTTGGCTTGATTATGACCTT+TGG | + | chr8_2:8059777-8059796 | None:intergenic | 35.0% |
| CTGAAAACACGATACAAAGA+GGG | - | chr8_2:8059966-8059985 | Msa1231780:intron | 35.0% | |
| TCAGTAAGAGTTCTCAGAAA+GGG | - | chr8_2:8060080-8060099 | Msa1231780:intron | 35.0% | |
| AACTAGAATAGGATGCATCA+GGG | + | chr8_2:8060284-8060303 | None:intergenic | 35.0% | |
| ATTGAAGCGATTCGTTGTTG+CGG | + | chr8_2:8057881-8057900 | None:intergenic | 40.0% | |
| TCTTTCCACTCTTCTTCATC+AGG | - | chr8_2:8057957-8057976 | Msa1231780:three_prime_UTR | 40.0% | |
| AGAAACCTGATGAAGAAGAG+TGG | + | chr8_2:8057965-8057984 | None:intergenic | 40.0% | |
| ! | GAAGAAGAGTGTAAGCAAAG+AGG | - | chr8_2:8058190-8058209 | Msa1231780:CDS | 40.0% |
| ! | AGAAGAGTGTAAGCAAAGAG+GGG | - | chr8_2:8058192-8058211 | Msa1231780:CDS | 40.0% |
| ! | TGTTGTCTGAAATGTTGTCG+CGG | - | chr8_2:8058243-8058262 | Msa1231780:intron | 40.0% |
| TGAAATGTTGTCGCGGTTAA+AGG | - | chr8_2:8058250-8058269 | Msa1231780:intron | 40.0% | |
| ACAGCGGAGAACCAAATTTA+GGG | + | chr8_2:8058282-8058301 | None:intergenic | 40.0% | |
| TACAGCGGAGAACCAAATTT+AGG | + | chr8_2:8058283-8058302 | None:intergenic | 40.0% | |
| GACAACACTTGACACATTCA+AGG | - | chr8_2:8058799-8058818 | Msa1231780:CDS | 40.0% | |
| GTTGTTATCAAATGCAGCCA+TGG | - | chr8_2:8058901-8058920 | Msa1231780:CDS | 40.0% | |
| TGTTATCAAATGCAGCCATG+GGG | - | chr8_2:8058903-8058922 | Msa1231780:CDS | 40.0% | |
| !! | CTTTGTAATTTTGGTCCCCA+TGG | + | chr8_2:8058921-8058940 | None:intergenic | 40.0% |
| !! | AATTTGGTTTGTGGTTGGTG+TGG | + | chr8_2:8059158-8059177 | None:intergenic | 40.0% |
| ! | GCATGAATTGATTTCTTCGC+CGG | - | chr8_2:8059298-8059317 | Msa1231780:intron | 40.0% |
| ATGAACTCCAACAGGAAAAG+GGG | + | chr8_2:8059459-8059478 | None:intergenic | 40.0% | |
| TCACTGTAATGAACTCCAAC+AGG | + | chr8_2:8059467-8059486 | None:intergenic | 40.0% | |
| !! | TCAGAAGATTCTGAAGCTTC+TGG | - | chr8_2:8059488-8059507 | Msa1231780:intron | 40.0% |
| ! | GTTGAAGTATCCAGATCTCA+TGG | - | chr8_2:8059538-8059557 | Msa1231780:intron | 40.0% |
| ! | TGAAGTATCCAGATCTCATG+GGG | - | chr8_2:8059540-8059559 | Msa1231780:intron | 40.0% |
| TGTGTTCCAAAGTCAGCAAT+TGG | - | chr8_2:8059569-8059588 | Msa1231780:intron | 40.0% | |
| TCCAAAGTCAGCAATTGGAA+AGG | - | chr8_2:8059574-8059593 | Msa1231780:intron | 40.0% | |
| !! | TCCTTTCCAATTGCTGACTT+TGG | + | chr8_2:8059578-8059597 | None:intergenic | 40.0% |
| ! | ATGTTGAAGCATCACCTGTT+TGG | - | chr8_2:8059600-8059619 | Msa1231780:intron | 40.0% |
| !! | AACACAAGTTTTTGGAGGTG+AGG | + | chr8_2:8059630-8059649 | None:intergenic | 40.0% |
| TTGTCCAACGATTTCTCATC+AGG | + | chr8_2:8059665-8059684 | None:intergenic | 40.0% | |
| TGATGAGAAATCGTTGGACA+AGG | - | chr8_2:8059664-8059683 | Msa1231780:intron | 40.0% | |
| GAAATCGTTGGACAAGGAAA+AGG | - | chr8_2:8059670-8059689 | Msa1231780:intron | 40.0% | |
| GTGGAAGAGGATATTTCCAA+AGG | - | chr8_2:8059758-8059777 | Msa1231780:intron | 40.0% | |
| TTGTTGTAACCAAGGTAGTG+TGG | - | chr8_2:8059802-8059821 | Msa1231780:intron | 40.0% | |
| !! | TTTTCAGGATTCAGCCACAT+GGG | + | chr8_2:8059953-8059972 | None:intergenic | 40.0% |
| ! | CCTCTTTGTATCGTGTTTTC+AGG | + | chr8_2:8059968-8059987 | None:intergenic | 40.0% |
| CCTGAAAACACGATACAAAG+AGG | - | chr8_2:8059965-8059984 | Msa1231780:intron | 40.0% | |
| GTCAGTAAGAGTTCTCAGAA+AGG | - | chr8_2:8060079-8060098 | Msa1231780:intron | 40.0% | |
| GAAAGGGTTTCTTGACCTAT+TGG | - | chr8_2:8060096-8060115 | Msa1231780:intron | 40.0% | |
| GAACTAGAATAGGATGCATC+AGG | + | chr8_2:8060285-8060304 | None:intergenic | 40.0% | |
| CCACAAAGTGGAACTAGAAT+AGG | + | chr8_2:8060295-8060314 | None:intergenic | 40.0% | |
| !! | CCTATTCTAGTTCCACTTTG+TGG | - | chr8_2:8060292-8060311 | Msa1231780:five_prime_UTR | 40.0% |
| ATCGGAATGAAGGAGAGTGA+GGG | + | chr8_2:8057938-8057957 | None:intergenic | 45.0% | |
| GAGTGGAAAGATCGGAATGA+AGG | + | chr8_2:8057948-8057967 | None:intergenic | 45.0% | |
| CAGCGGAGAACCAAATTTAG+GGG | + | chr8_2:8058281-8058300 | None:intergenic | 45.0% | |
| TTAGCACGCCATGAAACAAG+AGG | + | chr8_2:8059059-8059078 | None:intergenic | 45.0% | |
| GCTAATTGTACTGTTCAGCG+AGG | - | chr8_2:8059074-8059093 | Msa1231780:CDS | 45.0% | |
| ! | AGAGAAAGGGCAGGCTTTAT+TGG | + | chr8_2:8059248-8059267 | None:intergenic | 45.0% |
| AATAAAGCCTGCCCTTTCTC+TGG | - | chr8_2:8059247-8059266 | Msa1231780:intron | 45.0% | |
| CTCTTCACTCACCAGAGAAA+GGG | + | chr8_2:8059261-8059280 | None:intergenic | 45.0% | |
| !! | GGAGGTGACATTTTCAAGCA+AGG | + | chr8_2:8059365-8059384 | None:intergenic | 45.0% |
| CAATGTTTCCCCATGAGATC+TGG | + | chr8_2:8059551-8059570 | None:intergenic | 45.0% | |
| GACACCTGATGAGAAATCGT+TGG | - | chr8_2:8059658-8059677 | Msa1231780:intron | 45.0% | |
| !! | ATATAGAGAGCACTCCCATG+TGG | - | chr8_2:8059936-8059955 | Msa1231780:CDS | 45.0% |
| !! | GTTTTCAGGATTCAGCCACA+TGG | + | chr8_2:8059954-8059973 | None:intergenic | 45.0% |
| CACAGGAAGCTTCTTCCAAT+AGG | + | chr8_2:8060114-8060133 | None:intergenic | 45.0% | |
| AGTTCCACTTTGTGGACAAC+AGG | - | chr8_2:8060300-8060319 | Msa1231780:five_prime_UTR | 45.0% | |
| GATCGGAATGAAGGAGAGTG+AGG | + | chr8_2:8057939-8057958 | None:intergenic | 50.0% | |
| GTATGTTTGGTTAGCGGGAG+AGG | - | chr8_2:8058440-8058459 | Msa1231780:CDS | 50.0% | |
| ! | CTCCTTCGCCTCTTGTTTCA+TGG | - | chr8_2:8059048-8059067 | Msa1231780:CDS | 50.0% |
| ! | GGTTTGTGGTTGGTGTGGTT+TGG | + | chr8_2:8059153-8059172 | None:intergenic | 50.0% |
| !! | AGGGCAGGCTTTATTGGAGT+TGG | + | chr8_2:8059242-8059261 | None:intergenic | 50.0% |
| CCTCTTCACTCACCAGAGAA+AGG | + | chr8_2:8059262-8059281 | None:intergenic | 50.0% | |
| CCTTTCTCTGGTGAGTGAAG+AGG | - | chr8_2:8059259-8059278 | Msa1231780:intron | 50.0% | |
| ! | AAGTCCACCCCTTTTCCTGT+TGG | - | chr8_2:8059449-8059468 | Msa1231780:intron | 50.0% |
| AACTCCAACAGGAAAAGGGG+TGG | + | chr8_2:8059456-8059475 | None:intergenic | 50.0% | |
| ACAGGTGAACCACACTACCT+TGG | + | chr8_2:8059814-8059833 | None:intergenic | 50.0% | |
| ! | ATACAAAGAGGGAAGCGTGC+TGG | - | chr8_2:8059977-8059996 | Msa1231780:intron | 50.0% |
| GGAATGAAGGAGAGTGAGGG+AGG | + | chr8_2:8057935-8057954 | None:intergenic | 55.0% | |
| CGCCATGAAACAAGAGGCGA+AGG | + | chr8_2:8059053-8059072 | None:intergenic | 55.0% | |
| TCACTCACCAGAGAAAGGGC+AGG | + | chr8_2:8059257-8059276 | None:intergenic | 55.0% | |
| ! | TCTGAAGCTTCTGGCAGCGA+TGG | - | chr8_2:8059497-8059516 | Msa1231780:intron | 55.0% |
| GGAGGTGAGGTAAGCCAAAC+AGG | + | chr8_2:8059617-8059636 | None:intergenic | 55.0% | |
| CGATGGTGTGACGCAGGGTT+TGG | - | chr8_2:8059514-8059533 | Msa1231780:intron | 60.0% | |
| TGGCAGCGATGGTGTGACGC+AGG | - | chr8_2:8059508-8059527 | Msa1231780:intron | 65.0% | |
| GGCAGCGATGGTGTGACGCA+GGG | - | chr8_2:8059509-8059528 | Msa1231780:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 8057800 | 8060324 | 8057800 | ID=Msa1231780;Name=Msa1231780 |
| chr8_2 | mRNA | 8057800 | 8060324 | 8057800 | ID=Msa1231780-mRNA-1;Parent=Msa1231780;Name=Msa1231780-mRNA-1;_AED=0.04;_eAED=0.04;_QI=59|1|1|1|1|1|4|183|453 |
| chr8_2 | exon | 8057800 | 8058212 | 8057800 | ID=Msa1231780-mRNA-1:exon:3068;Parent=Msa1231780-mRNA-1 |
| chr8_2 | exon | 8058309 | 8059206 | 8058309 | ID=Msa1231780-mRNA-1:exon:3067;Parent=Msa1231780-mRNA-1 |
| chr8_2 | exon | 8059853 | 8059966 | 8059853 | ID=Msa1231780-mRNA-1:exon:3066;Parent=Msa1231780-mRNA-1 |
| chr8_2 | exon | 8060146 | 8060324 | 8060146 | ID=Msa1231780-mRNA-1:exon:3065;Parent=Msa1231780-mRNA-1 |
| chr8_2 | five_prime_UTR | 8060266 | 8060324 | 8060266 | ID=Msa1231780-mRNA-1:five_prime_utr;Parent=Msa1231780-mRNA-1 |
| chr8_2 | CDS | 8060146 | 8060265 | 8060146 | ID=Msa1231780-mRNA-1:cds;Parent=Msa1231780-mRNA-1 |
| chr8_2 | CDS | 8059853 | 8059966 | 8059853 | ID=Msa1231780-mRNA-1:cds;Parent=Msa1231780-mRNA-1 |
| chr8_2 | CDS | 8058309 | 8059206 | 8058309 | ID=Msa1231780-mRNA-1:cds;Parent=Msa1231780-mRNA-1 |
| chr8_2 | CDS | 8057983 | 8058212 | 8057983 | ID=Msa1231780-mRNA-1:cds;Parent=Msa1231780-mRNA-1 |
| chr8_2 | three_prime_UTR | 8057800 | 8057982 | 8057800 | ID=Msa1231780-mRNA-1:three_prime_utr;Parent=Msa1231780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
