AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0717830

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0717830 MtrunA17_Chr5g0406641 95.255 843 31 2 1 842 1 835 0.0 1647
Msa0717830 MtrunA17_Chr6g0484831 94.781 843 36 1 1 843 1 835 0.0 1620
Msa0717830 MtrunA17_Chr7g0215341 89.324 843 74 3 1 843 1 827 0.0 1506
Msa0717830 MtrunA17_Chr4g0007641 79.391 854 154 6 1 843 1 843 0.0 1374
Msa0717830 MtrunA17_Chr6g0464681 68.301 877 193 9 1 843 1 826 0.0 1175
Msa0717830 MtrunA17_Chr6g0486931 52.732 842 363 11 9 827 88 917 0.0 874
Msa0717830 MtrunA17_Chr8g0369361 50.128 782 359 10 60 826 9 774 0.0 781
Msa0717830 MtrunA17_Chr5g0427891 57.265 351 141 2 477 827 1 342 9.51e-136 408
Msa0717830 MtrunA17_Chr2g0302601 33.421 380 209 8 437 810 1215 1556 3.62e-56 210
Msa0717830 MtrunA17_Chr6g0477371 33.421 380 209 8 437 810 1206 1547 8.45e-55 206
Msa0717830 MtrunA17_Chr4g0017221 33.158 380 210 8 437 810 1190 1531 4.72e-54 204
Msa0717830 MtrunA17_Chr8g0364091 45.109 184 89 6 121 293 30 212 1.49e-39 146
Msa0717830 MtrunA17_Chr8g0364111 74.242 66 17 0 761 826 3 68 1.15e-27 107
Msa0717830 MtrunA17_Chr5g0427871 47.115 104 46 2 60 154 38 141 6.98e-23 95.5
Msa0717830 MtrunA17_Chr5g0427881 60.938 64 25 0 389 452 40 103 3.90e-22 92.0
Msa0717830 MtrunA17_Chr3g0087051 36.196 163 84 5 654 810 2 150 2.25e-20 89.0
Msa0717830 MtrunA17_Chr2g0306841 35.417 96 54 2 552 647 15 102 1.18e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0717830 AT1G69770.1 52.302 847 357 13 1 823 1 824 0.0 830
Msa0717830 AT1G80740.1 50.429 815 346 10 43 830 2 785 0.0 809
Msa0717830 AT4G19020.1 51.026 780 352 7 58 826 521 1281 0.0 801
Msa0717830 AT4G19020.2 51.026 780 352 7 58 826 473 1233 0.0 801
Msa0717830 AT4G14140.3 35.263 380 196 10 433 803 1164 1502 8.22e-57 213
Msa0717830 AT4G14140.1 35.263 380 196 10 433 803 1164 1502 8.22e-57 213
Msa0717830 AT4G14140.2 35.263 380 196 10 433 803 1190 1528 1.09e-56 213
Msa0717830 AT4G08990.1 35.279 377 200 10 433 803 1157 1495 2.06e-55 208
Msa0717830 AT4G13610.1 32.817 387 200 10 433 811 1066 1400 5.79e-53 201
Msa0717830 AT5G49160.2 33.075 387 211 10 433 811 1091 1437 1.52e-51 196
Msa0717830 AT5G49160.1 33.075 387 211 10 433 811 1179 1525 1.98e-51 196

Find 209 sgRNAs with CRISPR-Local

Find 413 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAATTTGCTGGTGGGTTTC+TGG 0.008640 5_1:-11729679 Msa0717830:CDS
TGCTTTGGAGCGTCTATTTC+TGG 0.092776 5_1:-11730959 Msa0717830:CDS
ACTTTACTGGATTTGTATTC+TGG 0.102309 5_1:-11731007 Msa0717830:CDS
CCAAAACATACGTGTGTTTC+TGG 0.107116 5_1:+11730764 None:intergenic
TTCAACCCGCTCAGTGTAAA+TGG 0.259279 5_1:+11733042 None:intergenic
GAAGCTTGAGTGGACTTTAC+TGG 0.259994 5_1:-11731020 Msa0717830:CDS
AGATATGATACCTTCTTCTT+TGG 0.269464 5_1:+11728494 None:intergenic
TTCCAGGGCCTGAATATTCT+TGG 0.283452 5_1:+11726875 None:intergenic
TAGACAACTTGGGTACTTAA+AGG 0.288833 5_1:+11727001 None:intergenic
CATTCGAGCTTGATAATTCA+TGG 0.289914 5_1:+11729629 None:intergenic
TCTTCTTCAACGGGATTAAC+AGG 0.302292 5_1:+11732747 None:intergenic
ATAGAAAACTCACTCGTTCT+TGG 0.312461 5_1:+11732596 None:intergenic
ATGATTTAATATTCACATTT+CGG 0.318121 5_1:-11726848 Msa0717830:three_prime_UTR
AGGAACGACGTCGTCTTGTT+TGG 0.324105 5_1:+11732803 None:intergenic
TGAAGTCTCGCTTTCTATTA+TGG 0.324543 5_1:+11731129 None:intergenic
AAATTTGCTGGTGGGTTTCT+GGG 0.327523 5_1:-11729678 Msa0717830:CDS
TTCAATATTTACAGTGTCTT+CGG 0.334695 5_1:+11731641 None:intergenic
ATCCTTTAGATTGTTTAGTT+AGG 0.347736 5_1:-11731475 Msa0717830:CDS
CTAAGAACTCTGTCTTGTTC+TGG 0.348365 5_1:+11727741 None:intergenic
CATATGGCCTTCCTCAATTT+CGG 0.349601 5_1:-11729587 Msa0717830:CDS
CCACCTTGTCAAGGTGTTAG+TGG 0.350266 5_1:-11729831 Msa0717830:CDS
ATGTCCACTGGCCTTTGCTT+TGG 0.354478 5_1:-11730974 Msa0717830:CDS
ACAAATGTCATTGCATAATC+TGG 0.361080 5_1:+11728211 None:intergenic
CTTTACTGGATTTGTATTCT+GGG 0.362248 5_1:-11731006 Msa0717830:CDS
CCAGACTGCTATAAGCTTTG+CGG 0.364307 5_1:-11727687 Msa0717830:CDS
TTAGTGGTTTCAATCGCTTC+AGG 0.364770 5_1:-11729815 Msa0717830:CDS
ATCCTCAAGGTTTAATGCCT+TGG 0.368420 5_1:+11729198 None:intergenic
GTTCCTGTGGCCCTTGCCCT+TGG 0.369274 5_1:-11727083 Msa0717830:CDS
GGGCTCCCATGTATCATAAC+TGG 0.370498 5_1:+11730284 None:intergenic
CACTGAGCGGGTTGAAGTGC+CGG 0.383051 5_1:-11733035 Msa0717830:five_prime_UTR
TTCGCTTTCTTTCTTCTAGA+AGG 0.383626 5_1:+11732708 None:intergenic
TGAGCTTCATCGGCCGGAAT+AGG 0.388189 5_1:+11732642 None:intergenic
TTCCTAACTAAACAATCTAA+AGG 0.391710 5_1:+11731473 None:intergenic
AACACATACCTCTGTTTGAC+AGG 0.396020 5_1:+11727663 None:intergenic
TCCCATCAACCTTCGCTTCA+CGG 0.396234 5_1:+11732454 None:intergenic
ATATTAAATCATACAATTCC+AGG 0.396940 5_1:+11726859 None:intergenic
GAAAGAGTGCATCTAAAATC+TGG 0.397497 5_1:-11728326 Msa0717830:CDS
CTTCGTTGGAGAACCTATTC+CGG 0.399606 5_1:-11732655 Msa0717830:CDS
AGACAACTTGGGTACTTAAA+GGG 0.412259 5_1:+11727002 None:intergenic
TCTAAAATCTGGAAAGCCTT+TGG 0.417831 5_1:-11728315 Msa0717830:intron
TCAACACTTTCAAGTGAATC+CGG 0.418845 5_1:-11731109 Msa0717830:CDS
GTAAAATATTGTTCTTCCTC+AGG 0.419858 5_1:+11731684 None:intergenic
AAGGGCCGAGCCTCATAATC+AGG 0.420289 5_1:-11728031 Msa0717830:intron
CATCAACTACATCTAAAGAA+TGG 0.427040 5_1:+11726976 None:intergenic
ATCCGACTCTGAGGTATTTG+AGG 0.427400 5_1:-11730481 Msa0717830:CDS
ATGATGGCTGCAGGGTCATA+TGG 0.428980 5_1:-11729603 Msa0717830:CDS
CTTGCCCTTGGATACACATT+CGG 0.430430 5_1:-11727071 Msa0717830:CDS
TTAGATTCTTTAAGTTGAGT+TGG 0.431314 5_1:+11731043 None:intergenic
AGCCAAGAATATTCAGGCCC+TGG 0.431422 5_1:-11726877 Msa0717830:three_prime_UTR
TACCGTGAAGCGAAGGTTGA+TGG 0.431767 5_1:-11732456 Msa0717830:CDS
TTCTTATCTTTCAGGTGCAT+TGG 0.437517 5_1:-11730320 Msa0717830:intron
TATCTTTCAGGTGCATTGGA+AGG 0.438453 5_1:-11730316 Msa0717830:intron
ATGTTAGCGAAAGTTAAATA+TGG 0.438654 5_1:+11731266 None:intergenic
TAATCCCGTTGAAGAAGAAC+TGG 0.438728 5_1:-11732742 Msa0717830:CDS
GAAACCAGTTCTTCTTCAAC+GGG 0.439261 5_1:+11732738 None:intergenic
GCTGAACACAACAGGCCATT+TGG 0.441659 5_1:-11728093 Msa0717830:intron
ATGAAAATGAAATCAAGATA+AGG 0.448948 5_1:+11726905 None:intergenic
TATCCAAGGGCAAGGGCCAC+AGG 0.450914 5_1:+11727080 None:intergenic
AAAGAATGGGCTAGACAACT+TGG 0.454064 5_1:+11726990 None:intergenic
ATCAACTACATCTAAAGAAT+GGG 0.455075 5_1:+11726977 None:intergenic
TGAAAATGAAATCAAGATAA+GGG 0.455636 5_1:+11726906 None:intergenic
TTTCTGGGGCGTTATGCTGT+GGG 0.456388 5_1:-11729663 Msa0717830:CDS
CTGGATTTGTATTCTGGGTG+TGG 0.458568 5_1:-11731001 Msa0717830:CDS
GAGAAGAGGAAAAGCGAAGC+GGG 0.458702 5_1:+11732965 None:intergenic
TAAAGAAAACAAGGTGGAAT+GGG 0.464628 5_1:-11728360 Msa0717830:CDS
ACAGATTCTGATTTGAATGC+TGG 0.467576 5_1:-11730549 Msa0717830:CDS
CCGATGAAGCTCAAAAGAAA+TGG 0.467775 5_1:-11732632 Msa0717830:CDS
ACAGGCCATTTGGTCGACTT+TGG 0.470283 5_1:-11728083 Msa0717830:intron
AATGTGTGTGCAGGTGATTA+AGG 0.470442 5_1:-11731555 Msa0717830:intron
CGAATGGGAATGATGGCTGC+AGG 0.476134 5_1:-11729612 Msa0717830:CDS
TTCGGCTCTGTAAAACCATT+GGG 0.476357 5_1:+11731659 None:intergenic
CCGCAAAGCTTATAGCAGTC+TGG 0.477033 5_1:+11727687 None:intergenic
CAAACAATAACCTGATTATG+AGG 0.477324 5_1:+11728021 None:intergenic
CAAAACATACGTGTGTTTCT+GGG 0.479283 5_1:+11730765 None:intergenic
ACGATTCCAGTTATGATACA+TGG 0.482110 5_1:-11730290 Msa0717830:CDS
CGAGAGAATGCAAGGCTACA+AGG 0.483765 5_1:-11727714 Msa0717830:CDS
CTTATCAGTTGCACGGACAT+TGG 0.484986 5_1:+11731084 None:intergenic
GTTTCTGGGGCGTTATGCTG+TGG 0.485630 5_1:-11729664 Msa0717830:CDS
CTCACTCGTTCTTGGTGTAT+CGG 0.487063 5_1:+11732604 None:intergenic
AGCGATGATGAAAGGAGCTA+TGG 0.490074 5_1:-11729039 Msa0717830:CDS
TCCGTGCAACTGATAAGAAA+GGG 0.491671 5_1:-11731078 Msa0717830:CDS
GTCTCGCTTTCTATTATGGC+AGG 0.492921 5_1:+11731133 None:intergenic
TTGCCACATTCCAAAGAAGA+AGG 0.494632 5_1:-11728504 Msa0717830:intron
TCCGACGATGCATTCTTCGT+TGG 0.497844 5_1:-11732669 Msa0717830:CDS
TTAGATGTAGTTGATGATGA+TGG 0.499460 5_1:-11726969 Msa0717830:CDS
CTTCGGCTCTGTAAAACCAT+TGG 0.499873 5_1:+11731658 None:intergenic
GCCATTTGGTCGACTTTGGT+GGG 0.501789 5_1:-11728079 Msa0717830:CDS
ATGAATTATCAAGCTCGAAT+GGG 0.503860 5_1:-11729627 Msa0717830:CDS
CTTACTTTAAAATAAAGTCC+TGG 0.505726 5_1:+11730408 None:intergenic
GGGTGTGGAGCTATGTCCAC+TGG 0.507514 5_1:-11730986 Msa0717830:CDS
AAAGAAAGCGAAGCAATCTT+CGG 0.511714 5_1:-11732697 Msa0717830:CDS
TTATGCTGTGGGCCGTCTAG+TGG 0.511914 5_1:-11729652 Msa0717830:CDS
CATGAATTATCAAGCTCGAA+TGG 0.511989 5_1:-11729628 Msa0717830:CDS
GTCCGTGCAACTGATAAGAA+AGG 0.513074 5_1:-11731079 Msa0717830:CDS
CCCCTTTCTTATCAGTTGCA+CGG 0.513311 5_1:+11731077 None:intergenic
CACTAATGAAAATTGTCAGC+TGG 0.514015 5_1:-11729221 Msa0717830:CDS
TTAAAGAAAACAAGGTGGAA+TGG 0.514535 5_1:-11728361 Msa0717830:CDS
CACCACAAATAAAATCAGCT+TGG 0.514779 5_1:+11729856 None:intergenic
ACATTCGGTTTAGCAATTCA+AGG 0.515197 5_1:-11727056 Msa0717830:CDS
GTTCTTACTTCAAACTCAGT+GGG 0.517126 5_1:+11729364 None:intergenic
GGCCATTTGGTCGACTTTGG+TGG 0.517220 5_1:-11728080 Msa0717830:CDS
ATCTTTCAGGTGCATTGGAA+GGG 0.520919 5_1:-11730315 Msa0717830:intron
AAAACACGCATCCGAAATTG+AGG 0.524141 5_1:+11729576 None:intergenic
TCATCGGTATTTAATTTCAA+AGG 0.524186 5_1:+11728539 None:intergenic
TTCTCCATCAGAACATACTT+AGG 0.525692 5_1:+11729717 None:intergenic
TGTGACGAGTTTGTACTGAA+TGG 0.527233 5_1:-11730582 Msa0717830:CDS
TCCCACCAAAGTCGACCAAA+TGG 0.528934 5_1:+11728078 None:intergenic
TAATGCAGGTACATGCAAGT+TGG 0.531949 5_1:-11727119 Msa0717830:intron
GATCATTAATTGCATCCTCA+AGG 0.533889 5_1:+11729185 None:intergenic
GAACTCTGTCTTGTTCTGGA+TGG 0.534548 5_1:+11727745 None:intergenic
TTCTGGCATTAAGCTTGTGA+CGG 0.535368 5_1:-11730942 Msa0717830:intron
TGAAAATTGTCAGCTGGCCA+AGG 0.535950 5_1:-11729215 Msa0717830:CDS
ATACCTTCTTCTTTGGAATG+TGG 0.536325 5_1:+11728501 None:intergenic
GAGTGAGGATGAAAGTTTGA+AGG 0.536508 5_1:-11732490 Msa0717830:CDS
TTTAAGTCTCCTAAAAGAGT+GGG 0.536611 5_1:-11730613 Msa0717830:CDS
AATTTCCATTTACACTGAGC+GGG 0.537479 5_1:-11733047 None:intergenic
GAAGCCTAAGTATGTTCTGA+TGG 0.538220 5_1:-11729721 Msa0717830:CDS
GGCAAACTTCAGGGACCTCA+AGG 0.539453 5_1:-11728393 Msa0717830:CDS
CTCGATACAACCTCATGAGT+TGG 0.540046 5_1:+11729397 None:intergenic
ACCGTGAAGCGAAGGTTGAT+GGG 0.541235 5_1:-11732455 Msa0717830:CDS
AGAAACCAGTTCTTCTTCAA+CGG 0.541839 5_1:+11732737 None:intergenic
GGATTACATCGCTACGATTG+TGG 0.542274 5_1:-11731721 Msa0717830:CDS
TATATCAGATTAAAGAGAAG+TGG 0.544554 5_1:-11728988 Msa0717830:intron
TGACTTGAAGAAATGGGCTG+TGG 0.544856 5_1:-11730828 Msa0717830:intron
ATGCAATGACATTTGTTCGT+GGG 0.548444 5_1:-11728204 Msa0717830:CDS
AGTTGCACGGACATTGGACC+CGG 0.551087 5_1:+11731090 None:intergenic
AACATACCTCAAGCCCTCGA+TGG 0.552579 5_1:+11730263 None:intergenic
TCAAGCTCGAATGGGAATGA+TGG 0.553083 5_1:-11729619 Msa0717830:CDS
AGATGCACTCTTTCAACAGA+GGG 0.553687 5_1:+11728335 None:intergenic
CTAAACCGAATGTGTATCCA+AGG 0.555284 5_1:+11727066 None:intergenic
AGACTACTCTCCATCTGCTA+TGG 0.555425 5_1:-11730453 Msa0717830:CDS
TTGTGTCTACTGTTGTAACA+AGG 0.557248 5_1:-11728050 Msa0717830:CDS
GCAATTCAAGGACTCTCTGA+TGG 0.560406 5_1:-11727044 Msa0717830:CDS
GGGAGCCCATCGAGGGCTTG+AGG 0.565566 5_1:-11730269 Msa0717830:intron
GTTTCACTACCGTGAAGCGA+AGG 0.565732 5_1:-11732463 Msa0717830:CDS
CGAATGTGTATCCAAGGGCA+AGG 0.566219 5_1:+11727072 None:intergenic
ACATACCTCAAGCCCTCGAT+GGG 0.566713 5_1:+11730264 None:intergenic
TCGTTCCTCGTTCTTCTCAA+CGG 0.569879 5_1:-11732788 Msa0717830:CDS
ACTGAGCGGGTTGAAGTGCC+GGG 0.573761 5_1:-11733034 Msa0717830:five_prime_UTR
TGTGGTGGGCCACCTTGTCA+AGG 0.574035 5_1:-11729840 Msa0717830:CDS
AAGAATCTAAGAAGCTTGAG+TGG 0.574067 5_1:-11731030 Msa0717830:CDS
GTGGTGAGACTTACAGGAAG+AGG 0.574419 5_1:+11730057 None:intergenic
ATGATGATAGCGATGATGAA+AGG 0.575051 5_1:-11729047 Msa0717830:CDS
AATTTGCTGGTGGGTTTCTG+GGG 0.576721 5_1:-11729677 Msa0717830:CDS
GTGGTATGCTGTATGATCAC+AGG 0.577358 5_1:-11728562 Msa0717830:CDS
CATAAATACATACTTAGAAG+AGG 0.580332 5_1:+11728180 None:intergenic
CAACACTTTCAAGTGAATCC+GGG 0.580699 5_1:-11731108 Msa0717830:CDS
TATTAAATCATACAATTCCA+GGG 0.581570 5_1:+11726860 None:intergenic
ATTGGGATCACCATAGCAGA+TGG 0.582193 5_1:+11730443 None:intergenic
GGAAAAGACATGGATTAATG+AGG 0.584597 5_1:+11726930 None:intergenic
TTAGTATTCGAGAGAATGCA+AGG 0.585626 5_1:-11727722 Msa0717830:CDS
CGCTCCAAAGCAAAGGCCAG+TGG 0.588179 5_1:+11730970 None:intergenic
GACAACTTGGGTACTTAAAG+GGG 0.589664 5_1:+11727003 None:intergenic
CTTTAACAAGCACTCCCTTG+AGG 0.595401 5_1:+11728378 None:intergenic
ATATATAAATGAAAGAGAAG+AGG 0.596509 5_1:+11732951 None:intergenic
GCAAACTCTCTCATAGTCAT+CGG 0.597622 5_1:+11728523 None:intergenic
CGATTCCAGTTATGATACAT+GGG 0.597731 5_1:-11730289 Msa0717830:CDS
AAATAGACGCTCCAAAGCAA+AGG 0.600764 5_1:+11730963 None:intergenic
GCGATGATGAAAGGAGCTAT+GGG 0.602155 5_1:-11729038 Msa0717830:CDS
AAGCAATGGCCTTACTTCAG+TGG 0.602447 5_1:+11729536 None:intergenic
ACTTTCGCTAACATTGACAA+TGG 0.603027 5_1:-11731257 Msa0717830:intron
AAATGCAGTTGCTGTTCCTG+TGG 0.603453 5_1:-11727096 Msa0717830:CDS
AACCTCAAATACCTCAGAGT+CGG 0.604058 5_1:+11730479 None:intergenic
AGAAGCTGATGATGAAGCGA+TGG 0.605443 5_1:-11730511 Msa0717830:CDS
CAATTTCCATTTACACTGAG+CGG 0.606867 5_1:-11733048 None:intergenic
AGATAAGGGTGGAAAAGACA+TGG 0.607414 5_1:+11726920 None:intergenic
TGCAGGTGATTAAGGACCAT+GGG 0.609611 5_1:-11731547 Msa0717830:intron
GATAATTCATGGCCACTAGA+CGG 0.613254 5_1:+11729640 None:intergenic
GATACATGGGAGCCCATCGA+GGG 0.613692 5_1:-11730276 Msa0717830:CDS
AATAACCTGATTATGAGGCT+CGG 0.618623 5_1:+11728026 None:intergenic
TATGCAATGACATTTGTTCG+TGG 0.619188 5_1:-11728205 Msa0717830:CDS
TCCAACGAAGAATGCATCGT+CGG 0.619858 5_1:+11732668 None:intergenic
TGATCATACAGCATACCACT+TGG 0.622966 5_1:+11728566 None:intergenic
AAATGAAATCAAGATAAGGG+TGG 0.624158 5_1:+11726909 None:intergenic
GAATGCTGGCAAAGAAGCTG+AGG 0.624902 5_1:-11730535 Msa0717830:CDS
AAGAATGGGCTAGACAACTT+GGG 0.629534 5_1:+11726991 None:intergenic
CACGCATCCGAAATTGAGGA+AGG 0.629581 5_1:+11729580 None:intergenic
AGTTCTTACTTCAAACTCAG+TGG 0.631096 5_1:+11729363 None:intergenic
TGAGTTGGTAACGGATATGA+CGG 0.631314 5_1:+11729412 None:intergenic
TAGATGCACTCTTTCAACAG+AGG 0.633772 5_1:+11728334 None:intergenic
GGAGGATAATGCTTATGTCA+AGG 0.640999 5_1:-11732418 Msa0717830:intron
GAATGGGAATGATGGCTGCA+GGG 0.641368 5_1:-11729611 Msa0717830:CDS
GGATAATTCATCCGACTCTG+AGG 0.644647 5_1:-11730490 Msa0717830:CDS
ACAACCTCATGAGTTGGTAA+CGG 0.650609 5_1:+11729403 None:intergenic
GCAAACTTCAGGGACCTCAA+GGG 0.650920 5_1:-11728392 Msa0717830:CDS
GAATGTGTATCCAAGGGCAA+GGG 0.651696 5_1:+11727073 None:intergenic
GGCCAAGGCATTAAACCTTG+AGG 0.652857 5_1:-11729200 Msa0717830:CDS
TGTGTCTACTGTTGTAACAA+GGG 0.655093 5_1:-11728049 Msa0717830:CDS
TTAAAGGGGAGAGTTGTCAA+AGG 0.658649 5_1:+11727017 None:intergenic
GACTCTCAAAGTGCACCAAG+TGG 0.659799 5_1:-11728581 Msa0717830:CDS
TTCTTACTTCAAACTCAGTG+GGG 0.660921 5_1:+11729365 None:intergenic
CCGTGCAACTGATAAGAAAG+GGG 0.670667 5_1:-11731077 Msa0717830:CDS
TCGTTCTTGGTGTATCGGTG+AGG 0.672316 5_1:+11732609 None:intergenic
GTGCAGGTGATTAAGGACCA+TGG 0.674534 5_1:-11731548 Msa0717830:intron
ATATCAAAATAGAAGTCACA+AGG 0.681018 5_1:+11731302 None:intergenic
AGAGAAGAGGAAAAGCGAAG+CGG 0.681303 5_1:+11732964 None:intergenic
TTTGCGGCCCTGTCAAACAG+AGG 0.682060 5_1:-11727671 Msa0717830:intron
GATGCACTCTTTCAACAGAG+GGG 0.682334 5_1:+11728336 None:intergenic
ATATCCGTTACCAACTCATG+AGG 0.683219 5_1:-11729407 Msa0717830:CDS
CCACTAACACCTTGACAAGG+TGG 0.683957 5_1:+11729831 None:intergenic
TAAACCGAATGTGTATCCAA+GGG 0.685117 5_1:+11727067 None:intergenic
TGATACATGGGAGCCCATCG+AGG 0.686118 5_1:-11730277 Msa0717830:CDS
ACACATACCTCTGTTTGACA+GGG 0.690367 5_1:+11727664 None:intergenic
AGTGCTTGTTAAAGAAAACA+AGG 0.696627 5_1:-11728369 Msa0717830:CDS
TTCTTCCGTTGAGAAGAACG+AGG 0.699637 5_1:+11732783 None:intergenic
TCAAAATAGAAGTCACAAGG+AGG 0.707483 5_1:+11731305 None:intergenic
GGAGATGTTTGAAACTCCTG+AGG 0.713389 5_1:-11731700 Msa0717830:CDS
GCTTGTTAAAGAAAACAAGG+TGG 0.727180 5_1:-11728366 Msa0717830:CDS
AAACCACTAACACCTTGACA+AGG 0.729461 5_1:+11729828 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTTTTTTTATTTTTTA+TGG - chr5_1:11727630-11727649 Msa0717830:intron 0.0%
!!! ACTATCTAAATATTTTTAAA+TGG - chr5_1:11730295-11730314 Msa0717830:CDS 10.0%
!! TTTATTTGAACAAAAAAATA+TGG - chr5_1:11732966-11732985 Msa0717830:five_prime_UTR 10.0%
!!! TTTTATTTTTTATGGTTCAT+TGG - chr5_1:11727638-11727657 Msa0717830:intron 15.0%
!! TTTATTTCATGTTGAAAATT+TGG - chr5_1:11727850-11727869 Msa0717830:intron 15.0%
!! TCAACATTAAATCAAATAAA+AGG + chr5_1:11727885-11727904 None:intergenic 15.0%
!!! TTTTACTGATTTTATAATCT+TGG - chr5_1:11728912-11728931 Msa0717830:intron 15.0%
!! TAATAATTAACTACACAATA+AGG + chr5_1:11729396-11729415 None:intergenic 15.0%
!!! ATGAAAGATTTTGTTATAAA+TGG - chr5_1:11729671-11729690 Msa0717830:CDS 15.0%
!!! TTTTGTTATAAATGGATATA+AGG - chr5_1:11729679-11729698 Msa0717830:CDS 15.0%
!!! TCTAAATATTTTTAAATGGA+AGG - chr5_1:11730299-11730318 Msa0717830:CDS 15.0%
!!! TATTTATGTACATCTATTTT+AGG - chr5_1:11731605-11731624 Msa0717830:intron 15.0%
!!! ATTTTATCATATGAAGTATT+TGG - chr5_1:11732294-11732313 Msa0717830:intron 15.0%
!! ATGATTTAATATTCACATTT+CGG - chr5_1:11732922-11732941 Msa0717830:five_prime_UTR 15.0%
!! ATATATAAATGAAAGAGAAG+AGG + chr5_1:11726822-11726841 None:intergenic 20.0%
!!! TGTTGAAAATTTGATGTTTT+AGG - chr5_1:11727424-11727443 Msa0717830:intron 20.0%
!!! GTTGAAAATTTGATGTTTTA+GGG - chr5_1:11727425-11727444 Msa0717830:intron 20.0%
!!! TTTGATTCATGTTGAAATTT+TGG - chr5_1:11727736-11727755 Msa0717830:CDS 20.0%
!! TCAACATTAAATCAAAAGAA+AGG + chr5_1:11727771-11727790 None:intergenic 20.0%
!!! AATGTTGAAAATTGTGTTTT+TGG - chr5_1:11727783-11727802 Msa0717830:intron 20.0%
!!! AATGTTGAAAATTGTGTTTT+AGG - chr5_1:11727783-11727802 Msa0717830:intron 20.0%
!!! AATTTTAACTCTTGTGTTTT+GGG - chr5_1:11728150-11728169 Msa0717830:intron 20.0%
!! TCAACATAAAAAATTTGGTA+AGG + chr5_1:11728590-11728609 None:intergenic 20.0%
!! CACAATCAACATAAAAAATT+TGG + chr5_1:11728595-11728614 None:intergenic 20.0%
!!! CAAATTTTTTATGTTGATTG+TGG - chr5_1:11728593-11728612 Msa0717830:CDS 20.0%
!! CTATAAATTTCTTATCTTTC+AGG - chr5_1:11729442-11729461 Msa0717830:intron 20.0%
!!! ATAGTCAATATCTTGATAAT+TGG + chr5_1:11729533-11729552 None:intergenic 20.0%
!! AAACTATATTCACAATGTAT+TGG + chr5_1:11730637-11730656 None:intergenic 20.0%
!!! TATACAACATTGTTTTAAAG+AGG + chr5_1:11731827-11731846 None:intergenic 20.0%
!!! TCTTATCTTTTTGTTGAAAT+TGG - chr5_1:11732140-11732159 Msa0717830:intron 20.0%
!!! TTTTTGTTGAAATTGGTAAA+TGG - chr5_1:11732147-11732166 Msa0717830:intron 20.0%
!! ATATGGAAGTTAGTTATAAT+AGG + chr5_1:11732407-11732426 None:intergenic 20.0%
!! GTGCAATTTAGTAATAAATA+TGG + chr5_1:11732424-11732443 None:intergenic 20.0%
!! TTAGGTGTAATATTTCTTAT+TGG - chr5_1:11732484-11732503 Msa0717830:CDS 20.0%
!! TGAAAATGAAATCAAGATAA+GGG + chr5_1:11732867-11732886 None:intergenic 20.0%
!! ATGAAAATGAAATCAAGATA+AGG + chr5_1:11732868-11732887 None:intergenic 20.0%
!! TATTAAATCATACAATTCCA+GGG + chr5_1:11732913-11732932 None:intergenic 20.0%
!! ATATTAAATCATACAATTCC+AGG + chr5_1:11732914-11732933 None:intergenic 20.0%
!! AACAAAAAAATATGGCAAAT+GGG - chr5_1:11732974-11732993 Msa0717830:five_prime_UTR 20.0%
!!! AGTGCTGTTTTTTTTTTGTT+AGG + chr5_1:11726897-11726916 None:intergenic 25.0%
!! TTATTTCTTTGATTGCATGT+TGG - chr5_1:11727449-11727468 Msa0717830:intron 25.0%
!! TGTTGAGATTTTTCTACTTT+AGG - chr5_1:11727506-11727525 Msa0717830:intron 25.0%
!! GTTGAGATTTTTCTACTTTA+GGG - chr5_1:11727507-11727526 Msa0717830:intron 25.0%
! TATGATTTCGTGTTGAAAAT+TGG - chr5_1:11727538-11727557 Msa0717830:intron 25.0%
! ATGATTTCGTGTTGAAAATT+GGG - chr5_1:11727539-11727558 Msa0717830:intron 25.0%
!! ATGTTGAAAACTGTGTTTTA+TGG - chr5_1:11727671-11727690 Msa0717830:intron 25.0%
! TATGGTTCATTTCTTTGATT+TGG - chr5_1:11727689-11727708 Msa0717830:CDS 25.0%
!!! CATGTTGAAATTTTGGTTTT+AGG - chr5_1:11727743-11727762 Msa0717830:CDS 25.0%
! TTGGATTCATTTCTTTGATT+TGG - chr5_1:11727802-11727821 Msa0717830:intron 25.0%
!!! CATGTTGAAAATTTGGTTTT+AGG - chr5_1:11727857-11727876 Msa0717830:intron 25.0%
! TTCAATATTTACAGTGTCTT+CGG + chr5_1:11728132-11728151 None:intergenic 25.0%
!!! GAATTTTAACTCTTGTGTTT+TGG - chr5_1:11728149-11728168 Msa0717830:intron 25.0%
!!! TTTAGGGTTATTGTTGATTT+TGG - chr5_1:11728185-11728204 Msa0717830:intron 25.0%
! ATCCTTTAGATTGTTTAGTT+AGG - chr5_1:11728295-11728314 Msa0717830:intron 25.0%
! TTCCTAACTAAACAATCTAA+AGG + chr5_1:11728300-11728319 None:intergenic 25.0%
!!! ATGTTGATTTTGTTTACTAC+AGG - chr5_1:11728422-11728441 Msa0717830:intron 25.0%
! ATATCAAAATAGAAGTCACA+AGG + chr5_1:11728471-11728490 None:intergenic 25.0%
! ATGTTAGCGAAAGTTAAATA+TGG + chr5_1:11728507-11728526 None:intergenic 25.0%
!!! TTAGATTCTTTAAGTTGAGT+TGG + chr5_1:11728730-11728749 None:intergenic 25.0%
!! TAATTTGCATGATGTTTCTT+TGG - chr5_1:11728860-11728879 Msa0717830:intron 25.0%
!!! TTGTTTTTGACTTGAAGAAA+TGG - chr5_1:11728935-11728954 Msa0717830:intron 25.0%
!!! TGTTTTTGACTTGAAGAAAT+GGG - chr5_1:11728936-11728955 Msa0717830:intron 25.0%
!!! CTTACTTTAAAATAAAGTCC+TGG + chr5_1:11729365-11729384 None:intergenic 25.0%
! AGTTAATTATTATCAGCTAG+TGG - chr5_1:11729404-11729423 Msa0717830:CDS 25.0%
! TCTTAAGTAAAGCAAAGTTA+GGG + chr5_1:11729561-11729580 None:intergenic 25.0%
! ATCTTAAGTAAAGCAAAGTT+AGG + chr5_1:11729562-11729581 None:intergenic 25.0%
!!! TTATTTTTTTCATCCTCCAA+CGG + chr5_1:11729993-11730012 None:intergenic 25.0%
! AAAACTAGTACTATAAGCAA+TGG + chr5_1:11730251-11730270 None:intergenic 25.0%
!!! TATTTTTGAAAATCAGTACG+AGG + chr5_1:11730764-11730783 None:intergenic 25.0%
! TATATCAGATTAAAGAGAAG+TGG - chr5_1:11730782-11730801 Msa0717830:CDS 25.0%
! ATTTATCAGCTAAAATGTAC+TGG - chr5_1:11730976-11730995 Msa0717830:CDS 25.0%
!! TCATCGGTATTTAATTTCAA+AGG + chr5_1:11731234-11731253 None:intergenic 25.0%
! CATAAATACATACTTAGAAG+AGG + chr5_1:11731593-11731612 None:intergenic 25.0%
!!! TTTTAAAGAGGTTTTGCAAT+GGG + chr5_1:11731815-11731834 None:intergenic 25.0%
! CATAGATATGTGAAAATTTG+TGG + chr5_1:11732255-11732274 None:intergenic 25.0%
! ATAATAGGTTAATCAGTTGT+TGG + chr5_1:11732392-11732411 None:intergenic 25.0%
!! TTCTTATTGGTCTAACAATA+TGG - chr5_1:11732497-11732516 Msa0717830:CDS 25.0%
! AATAGTTACATCTTTAATGC+AGG - chr5_1:11732637-11732656 Msa0717830:CDS 25.0%
! ATCAACTACATCTAAAGAAT+GGG + chr5_1:11732796-11732815 None:intergenic 25.0%
!!! TTTTTAAGCCAAGAATATTC+AGG - chr5_1:11732887-11732906 Msa0717830:five_prime_UTR 25.0%
! GAACAAAAAAATATGGCAAA+TGG - chr5_1:11732973-11732992 Msa0717830:five_prime_UTR 25.0%
!! TTTCACTACTTTTCATTTCC+CGG + chr5_1:11726757-11726776 None:intergenic 30.0%
! TGATGGGATTTTATATAAGC+TGG - chr5_1:11727331-11727350 Msa0717830:intron 30.0%
!! TCATTTCTTTGATTTGGTGA+TGG - chr5_1:11727695-11727714 Msa0717830:CDS 30.0%
!! GATTCATTTCTTTGATTTGG+TGG - chr5_1:11727805-11727824 Msa0717830:intron 30.0%
! TTGTTTGCTGAATGTTGTTT+AGG - chr5_1:11728010-11728029 Msa0717830:intron 30.0%
! TGTTTGCTGAATGTTGTTTA+GGG - chr5_1:11728011-11728030 Msa0717830:intron 30.0%
GTAAAATATTGTTCTTCCTC+AGG + chr5_1:11728089-11728108 None:intergenic 30.0%
! AACAATATTTTACTGCCCAA+TGG - chr5_1:11728096-11728115 Msa0717830:intron 30.0%
ACTTTACTGGATTTGTATTC+TGG - chr5_1:11728763-11728782 Msa0717830:intron 30.0%
CTTTACTGGATTTGTATTCT+GGG - chr5_1:11728764-11728783 Msa0717830:intron 30.0%
!!! TTGGTTCATTTTAACTTTGC+TGG - chr5_1:11728879-11728898 Msa0717830:intron 30.0%
TCACCTGAATTTAACATTTC+GGG + chr5_1:11729115-11729134 None:intergenic 30.0%
CTCACCTGAATTTAACATTT+CGG + chr5_1:11729116-11729135 None:intergenic 30.0%
AGACTTAAAAAGTCTTCTGT+GGG + chr5_1:11729146-11729165 None:intergenic 30.0%
!! TTTTAAGTCTCCTAAAAGAG+TGG - chr5_1:11729156-11729175 Msa0717830:intron 30.0%
TTTAAGTCTCCTAAAAGAGT+GGG - chr5_1:11729157-11729176 Msa0717830:intron 30.0%
CTTAAGTAAAGCAAAGTTAG+GGG + chr5_1:11729560-11729579 None:intergenic 30.0%
TAGCTATAAGCCTTAAGTAA+CGG + chr5_1:11729589-11729608 None:intergenic 30.0%
TTGAGTACAAGTCAATAATG+AGG + chr5_1:11729740-11729759 None:intergenic 30.0%
GAGAATTGATAAACCATTAG+AGG + chr5_1:11729775-11729794 None:intergenic 30.0%
AACCATTAGAGGTGAAAAAA+GGG + chr5_1:11729838-11729857 None:intergenic 30.0%
AAACCATTAGAGGTGAAAAA+AGG + chr5_1:11729839-11729858 None:intergenic 30.0%
GAGAATTGATAAACCATTAG+AGG + chr5_1:11729775-11729794 None:intergenic 30.0%
!! AAGCTGATTTTATTTGTGGT+GGG - chr5_1:11729916-11729935 Msa0717830:intron 30.0%
!!! GTAGACATTTTGAAATTTGC+TGG - chr5_1:11730080-11730099 Msa0717830:CDS 30.0%
!!! ACATTTTGAAATTTGCTGGT+GGG - chr5_1:11730084-11730103 Msa0717830:CDS 30.0%
ATGAATTATCAAGCTCGAAT+GGG - chr5_1:11730143-11730162 Msa0717830:intron 30.0%
GAACTTTACTATCACAACAT+GGG + chr5_1:11730475-11730494 None:intergenic 30.0%
AGAACTTTACTATCACAACA+TGG + chr5_1:11730476-11730495 None:intergenic 30.0%
! AAGTTCTAATCAATGTGATC+TGG - chr5_1:11730489-11730508 Msa0717830:CDS 30.0%
! AGTTCTAATCAATGTGATCT+GGG - chr5_1:11730490-11730509 Msa0717830:CDS 30.0%
AACAAAATCAACATACTGGT+GGG + chr5_1:11730612-11730631 None:intergenic 30.0%
TTTGATTCCACTTCTTTACT+CGG - chr5_1:11730675-11730694 Msa0717830:intron 30.0%
!!! TTTGAGTTTTGAAGTAGTCT+TGG - chr5_1:11730822-11730841 Msa0717830:intron 30.0%
GATTGTATGAATCTTACTCT+AGG + chr5_1:11730953-11730972 None:intergenic 30.0%
TAGAATTGTGTATGTGTATG+TGG - chr5_1:11731048-11731067 Msa0717830:CDS 30.0%
AGATATGATACCTTCTTCTT+TGG + chr5_1:11731279-11731298 None:intergenic 30.0%
! AGTGCTTGTTAAAGAAAACA+AGG - chr5_1:11731401-11731420 Msa0717830:intron 30.0%
TTAAAGAAAACAAGGTGGAA+TGG - chr5_1:11731409-11731428 Msa0717830:intron 30.0%
TAAAGAAAACAAGGTGGAAT+GGG - chr5_1:11731410-11731429 Msa0717830:intron 30.0%
TACTAATCTTGTCTTGTCTT+AGG - chr5_1:11731478-11731497 Msa0717830:CDS 30.0%
ACTAATCTTGTCTTGTCTTA+GGG - chr5_1:11731479-11731498 Msa0717830:CDS 30.0%
ACAAATGTCATTGCATAATC+TGG + chr5_1:11731562-11731581 None:intergenic 30.0%
CAAACAATAACCTGATTATG+AGG + chr5_1:11731752-11731771 None:intergenic 30.0%
!!! GTTTTAAAGAGGTTTTGCAA+TGG + chr5_1:11731816-11731835 None:intergenic 30.0%
TGTGAAAATTTGTGGATACA+AGG + chr5_1:11732247-11732266 None:intergenic 30.0%
! ATATGAAGTATTTGGAGACA+AGG - chr5_1:11732302-11732321 Msa0717830:intron 30.0%
ATTCCAATCTCAAAATGGAA+GGG + chr5_1:11732348-11732367 None:intergenic 30.0%
AACAGATTCCAATCTCAAAA+TGG + chr5_1:11732353-11732372 None:intergenic 30.0%
CATCAACTACATCTAAAGAA+TGG + chr5_1:11732797-11732816 None:intergenic 30.0%
!! TTAGATGTAGTTGATGATGA+TGG - chr5_1:11732801-11732820 Msa0717830:CDS 30.0%
AAATGAAATCAAGATAAGGG+TGG + chr5_1:11732864-11732883 None:intergenic 30.0%
!!! GATTTACGAACGCGTTTTTT+AGG + chr5_1:11726945-11726964 None:intergenic 35.0%
!!! GGGATTAACAGGAGATTTTT+TGG + chr5_1:11727015-11727034 None:intergenic 35.0%
AGAAACCAGTTCTTCTTCAA+CGG + chr5_1:11727036-11727055 None:intergenic 35.0%
TTCGCTTTCTTTCTTCTAGA+AGG + chr5_1:11727065-11727084 None:intergenic 35.0%
AAAGAAAGCGAAGCAATCTT+CGG - chr5_1:11727073-11727092 Msa0717830:CDS 35.0%
! CCATTTCTTTTGAGCTTCAT+CGG + chr5_1:11727141-11727160 None:intergenic 35.0%
ATAGAAAACTCACTCGTTCT+TGG + chr5_1:11727177-11727196 None:intergenic 35.0%
! TGGGATTTTATATAAGCTGG+AGG - chr5_1:11727334-11727353 Msa0717830:intron 35.0%
!! TCATTTCTTTGATTTGGTGG+TGG - chr5_1:11727808-11727827 Msa0717830:intron 35.0%
! ATGCTGAATACTGTGTTGTT+TGG - chr5_1:11727938-11727957 Msa0717830:intron 35.0%
!! TGCTGAATACTGTGTTGTTT+GGG - chr5_1:11727939-11727958 Msa0717830:intron 35.0%
! GTTTGCTGAATGTTGTTTAG+GGG - chr5_1:11728012-11728031 Msa0717830:intron 35.0%
! TTTGCTGAATGTTGTTTAGG+GGG - chr5_1:11728013-11728032 Msa0717830:intron 35.0%
! TTGGGTTTGTTTAGCTGTTT+AGG - chr5_1:11728168-11728187 Msa0717830:intron 35.0%
! TGGGTTTGTTTAGCTGTTTA+GGG - chr5_1:11728169-11728188 Msa0717830:intron 35.0%
! TTTTGTCAACTAGATTCCCA+TGG + chr5_1:11728242-11728261 None:intergenic 35.0%
GGAATCTAGTTGACAAAAAG+AGG - chr5_1:11728244-11728263 Msa0717830:intron 35.0%
TCAAAATAGAAGTCACAAGG+AGG + chr5_1:11728468-11728487 None:intergenic 35.0%
ACTTTCGCTAACATTGACAA+TGG - chr5_1:11728513-11728532 Msa0717830:CDS 35.0%
TGAAGTCTCGCTTTCTATTA+TGG + chr5_1:11728644-11728663 None:intergenic 35.0%
! TCAACACTTTCAAGTGAATC+CGG - chr5_1:11728661-11728680 Msa0717830:intron 35.0%
AAGAATCTAAGAAGCTTGAG+TGG - chr5_1:11728740-11728759 Msa0717830:intron 35.0%
CAAAACATACGTGTGTTTCT+GGG + chr5_1:11729008-11729027 None:intergenic 35.0%
CTTCCCGAAATGTTAAATTC+AGG - chr5_1:11729109-11729128 Msa0717830:intron 35.0%
CGAAATGTTAAATTCAGGTG+AGG - chr5_1:11729114-11729133 Msa0717830:intron 35.0%
GAGACTTAAAAAGTCTTCTG+TGG + chr5_1:11729147-11729166 None:intergenic 35.0%
! ACAGATTCTGATTTGAATGC+TGG - chr5_1:11729221-11729240 Msa0717830:CDS 35.0%
!! CCTGGTTTTTCATCTTCATT+GGG + chr5_1:11729347-11729366 None:intergenic 35.0%
!! TCCTGGTTTTTCATCTTCAT+TGG + chr5_1:11729348-11729367 None:intergenic 35.0%
! TTCTTATCTTTCAGGTGCAT+TGG - chr5_1:11729450-11729469 Msa0717830:intron 35.0%
ACGATTCCAGTTATGATACA+TGG - chr5_1:11729480-11729499 Msa0717830:intron 35.0%
CGATTCCAGTTATGATACAT+GGG - chr5_1:11729481-11729500 Msa0717830:intron 35.0%
TAAGATTTGCCCGTTACTTA+AGG - chr5_1:11729576-11729595 Msa0717830:CDS 35.0%
AGCTATAAGCCTTAAGTAAC+GGG + chr5_1:11729588-11729607 None:intergenic 35.0%
TACAAGTCAATAATGAGGAG+TGG + chr5_1:11729735-11729754 None:intergenic 35.0%
AACCATTAGAGGTGAAAGAA+GGG + chr5_1:11729764-11729783 None:intergenic 35.0%
AAACCATTAGAGGTGAAAGA+AGG + chr5_1:11729765-11729784 None:intergenic 35.0%
ACCATTAGAGGTGAAAAAAG+GGG + chr5_1:11729837-11729856 None:intergenic 35.0%
TACTACTTTATGCTCGTACA+GGG - chr5_1:11729891-11729910 Msa0717830:intron 35.0%
CACCACAAATAAAATCAGCT+TGG + chr5_1:11729917-11729936 None:intergenic 35.0%
!! CAAGCTGATTTTATTTGTGG+TGG - chr5_1:11729915-11729934 Msa0717830:intron 35.0%
TTCTCCATCAGAACATACTT+AGG + chr5_1:11730056-11730075 None:intergenic 35.0%
!!! GACATTTTGAAATTTGCTGG+TGG - chr5_1:11730083-11730102 Msa0717830:CDS 35.0%
! CATTCGAGCTTGATAATTCA+TGG + chr5_1:11730144-11730163 None:intergenic 35.0%
CATGAATTATCAAGCTCGAA+TGG - chr5_1:11730142-11730161 Msa0717830:intron 35.0%
TTCTTACTTCAAACTCAGTG+GGG + chr5_1:11730408-11730427 None:intergenic 35.0%
GTTCTTACTTCAAACTCAGT+GGG + chr5_1:11730409-11730428 None:intergenic 35.0%
AGTTCTTACTTCAAACTCAG+TGG + chr5_1:11730410-11730429 None:intergenic 35.0%
! TTGTGCCTTTTTCTTAGACA+AGG - chr5_1:11730447-11730466 Msa0717830:CDS 35.0%
! TCTGGGTACTTTTATAATGC+AGG - chr5_1:11730507-11730526 Msa0717830:CDS 35.0%
! CAGCTGACAATTTTCATTAG+TGG + chr5_1:11730551-11730570 None:intergenic 35.0%
CACTAATGAAAATTGTCAGC+TGG - chr5_1:11730549-11730568 Msa0717830:CDS 35.0%
GATCATTAATTGCATCCTCA+AGG + chr5_1:11730588-11730607 None:intergenic 35.0%
GAACAAAATCAACATACTGG+TGG + chr5_1:11730613-11730632 None:intergenic 35.0%
GGTGAACAAAATCAACATAC+TGG + chr5_1:11730616-11730635 None:intergenic 35.0%
TTGATTCCACTTCTTTACTC+GGG - chr5_1:11730676-11730695 Msa0717830:intron 35.0%
! TCGGGTTTCTTTTATCAAAC+AGG - chr5_1:11730694-11730713 Msa0717830:intron 35.0%
TCCTTCATCCTTAAACTGAA+CGG - chr5_1:11731118-11731137 Msa0717830:CDS 35.0%
!! ATACCTTCTTCTTTGGAATG+TGG + chr5_1:11731272-11731291 None:intergenic 35.0%
! TTGTGCTTGCTTGTCTTTTT+AGG - chr5_1:11731353-11731372 Msa0717830:intron 35.0%
! TGTGCTTGCTTGTCTTTTTA+GGG - chr5_1:11731354-11731373 Msa0717830:intron 35.0%
! GCTTGTTAAAGAAAACAAGG+TGG - chr5_1:11731404-11731423 Msa0717830:intron 35.0%
! GAAAGAGTGCATCTAAAATC+TGG - chr5_1:11731444-11731463 Msa0717830:intron 35.0%
! TCTAAAATCTGGAAAGCCTT+TGG - chr5_1:11731455-11731474 Msa0717830:CDS 35.0%
CAAGACAAGATTAGTACCAA+AGG + chr5_1:11731474-11731493 None:intergenic 35.0%
TATGCAATGACATTTGTTCG+TGG - chr5_1:11731565-11731584 Msa0717830:intron 35.0%
ATGCAATGACATTTGTTCGT+GGG - chr5_1:11731566-11731585 Msa0717830:intron 35.0%
TTGTGTCTACTGTTGTAACA+AGG - chr5_1:11731720-11731739 Msa0717830:CDS 35.0%
TGTGTCTACTGTTGTAACAA+GGG - chr5_1:11731721-11731740 Msa0717830:CDS 35.0%
AATAACCTGATTATGAGGCT+CGG + chr5_1:11731747-11731766 None:intergenic 35.0%
TGAGAAATGTTATTGACCTC+AGG - chr5_1:11731847-11731866 Msa0717830:intron 35.0%
ATGCTAACATGATAATCCTG+AGG + chr5_1:11731866-11731885 None:intergenic 35.0%
ATCTGACCATGTTCTTTGTT+TGG - chr5_1:11731902-11731921 Msa0717830:intron 35.0%
TTAGTATTCGAGAGAATGCA+AGG - chr5_1:11732048-11732067 Msa0717830:intron 35.0%
GAAATTGGTAAATGGAGAAC+TGG - chr5_1:11732155-11732174 Msa0717830:intron 35.0%
GATTCCAATCTCAAAATGGA+AGG + chr5_1:11732349-11732368 None:intergenic 35.0%
! TTGTTGGTTAAGGAATTGGA+AGG + chr5_1:11732376-11732395 None:intergenic 35.0%
! TCAGTTGTTGGTTAAGGAAT+TGG + chr5_1:11732380-11732399 None:intergenic 35.0%
! GGTTAATCAGTTGTTGGTTA+AGG + chr5_1:11732386-11732405 None:intergenic 35.0%
AAGTTCTTTACTGATCCCTT+AGG + chr5_1:11732464-11732483 None:intergenic 35.0%
! GGGATCAGTAAAGAACTTTT+AGG - chr5_1:11732466-11732485 Msa0717830:CDS 35.0%
TGCCATGCTATACATAATGA+CGG + chr5_1:11732614-11732633 None:intergenic 35.0%
TAAACCGAATGTGTATCCAA+GGG + chr5_1:11732706-11732725 None:intergenic 35.0%
ACATTCGGTTTAGCAATTCA+AGG - chr5_1:11732714-11732733 Msa0717830:CDS 35.0%
AGACAACTTGGGTACTTAAA+GGG + chr5_1:11732771-11732790 None:intergenic 35.0%
TAGACAACTTGGGTACTTAA+AGG + chr5_1:11732772-11732791 None:intergenic 35.0%
! GGAAAAGACATGGATTAATG+AGG + chr5_1:11732843-11732862 None:intergenic 35.0%
!!! GCGTTTTTTAGGCATTGTTG+AGG + chr5_1:11726934-11726953 None:intergenic 40.0%
TCTTCTTCAACGGGATTAAC+AGG + chr5_1:11727026-11727045 None:intergenic 40.0%
TAATCCCGTTGAAGAAGAAC+TGG - chr5_1:11727028-11727047 Msa0717830:CDS 40.0%
GAAACCAGTTCTTCTTCAAC+GGG + chr5_1:11727035-11727054 None:intergenic 40.0%
CCGATGAAGCTCAAAAGAAA+TGG - chr5_1:11727138-11727157 Msa0717830:intron 40.0%
! GTTTTGTAGTGAATCGAGTG+AGG - chr5_1:11727265-11727284 Msa0717830:intron 40.0%
GAGTGAGGATGAAAGTTTGA+AGG - chr5_1:11727280-11727299 Msa0717830:intron 40.0%
GGAGGATAATGCTTATGTCA+AGG - chr5_1:11727352-11727371 Msa0717830:intron 40.0%
TTCGGCTCTGTAAAACCATT+GGG + chr5_1:11728114-11728133 None:intergenic 40.0%
GGTAATTTGAATGTGTGTGC+AGG - chr5_1:11728206-11728225 Msa0717830:CDS 40.0%
AATGTGTGTGCAGGTGATTA+AGG - chr5_1:11728215-11728234 Msa0717830:CDS 40.0%
! CTACACAAAGCACTTACATC+AGG + chr5_1:11728345-11728364 None:intergenic 40.0%
! CAACACTTTCAAGTGAATCC+GGG - chr5_1:11728662-11728681 Msa0717830:intron 40.0%
TCCGTGCAACTGATAAGAAA+GGG - chr5_1:11728692-11728711 Msa0717830:intron 40.0%
AAATAGACGCTCCAAAGCAA+AGG + chr5_1:11728810-11728829 None:intergenic 40.0%
TTCTGGCATTAAGCTTGTGA+CGG - chr5_1:11728828-11728847 Msa0717830:intron 40.0%
CCAAAACATACGTGTGTTTC+TGG + chr5_1:11729009-11729028 None:intergenic 40.0%
! CCAGAAACACACGTATGTTT+TGG - chr5_1:11729006-11729025 Msa0717830:CDS 40.0%
! AAAGCTTAGCCCACTCTTTT+AGG + chr5_1:11729169-11729188 None:intergenic 40.0%
TGTGACGAGTTTGTACTGAA+TGG - chr5_1:11729188-11729207 Msa0717830:CDS 40.0%
AACCTCAAATACCTCAGAGT+CGG + chr5_1:11729294-11729313 None:intergenic 40.0%
CCCAATGAAGATGAAAAACC+AGG - chr5_1:11729344-11729363 Msa0717830:intron 40.0%
! TATCTTTCAGGTGCATTGGA+AGG - chr5_1:11729454-11729473 Msa0717830:intron 40.0%
! ATCTTTCAGGTGCATTGGAA+GGG - chr5_1:11729455-11729474 Msa0717830:intron 40.0%
ACCATTAGAGGTGAAAGAAG+GGG + chr5_1:11729763-11729782 None:intergenic 40.0%
!!! ACCCCTTTTTTCACCTCTAA+TGG - chr5_1:11729833-11729852 Msa0717830:CDS 40.0%
GTACTACTTTATGCTCGTAC+AGG - chr5_1:11729890-11729909 Msa0717830:intron 40.0%
!! GGCCAAGCTGATTTTATTTG+TGG - chr5_1:11729912-11729931 Msa0717830:intron 40.0%
AAACCACTAACACCTTGACA+AGG + chr5_1:11729945-11729964 None:intergenic 40.0%
TTAGTGGTTTCAATCGCTTC+AGG - chr5_1:11729955-11729974 Msa0717830:intron 40.0%
GAAGCCTAAGTATGTTCTGA+TGG - chr5_1:11730049-11730068 Msa0717830:intron 40.0%
!! AAATTTGCTGGTGGGTTTCT+GGG - chr5_1:11730092-11730111 Msa0717830:CDS 40.0%
GATAATTCATGGCCACTAGA+CGG + chr5_1:11730133-11730152 None:intergenic 40.0%
CATATGGCCTTCCTCAATTT+CGG - chr5_1:11730183-11730202 Msa0717830:intron 40.0%
AAAACACGCATCCGAAATTG+AGG + chr5_1:11730197-11730216 None:intergenic 40.0%
! TTCGGATGCGTGTTTTTCTT+TGG - chr5_1:11730201-11730220 Msa0717830:intron 40.0%
! TCGGATGCGTGTTTTTCTTT+GGG - chr5_1:11730202-11730221 Msa0717830:intron 40.0%
!! TGAGTTGGTAACGGATATGA+CGG + chr5_1:11730361-11730380 None:intergenic 40.0%
ATATCCGTTACCAACTCATG+AGG - chr5_1:11730363-11730382 Msa0717830:intron 40.0%
!! ACAACCTCATGAGTTGGTAA+CGG + chr5_1:11730370-11730389 None:intergenic 40.0%
GGGTTCCTTGTCTAAGAAAA+AGG + chr5_1:11730455-11730474 None:intergenic 40.0%
ATCCTCAAGGTTTAATGCCT+TGG + chr5_1:11730575-11730594 None:intergenic 40.0%
AAGAAACCCGAGTAAAGAAG+TGG + chr5_1:11730685-11730704 None:intergenic 40.0%
! AACTGCATTTTCTCTCACTC+TGG - chr5_1:11731012-11731031 Msa0717830:CDS 40.0%
GCATGTTGTTACATGTCACA+TGG - chr5_1:11731076-11731095 Msa0717830:CDS 40.0%
CCTTCATCCTTAAACTGAAC+GGG - chr5_1:11731119-11731138 Msa0717830:CDS 40.0%
TTCAACACCCGTTCAGTTTA+AGG + chr5_1:11731129-11731148 None:intergenic 40.0%
! TGTGTTTTCTACTCCAGAGA+TGG - chr5_1:11731152-11731171 Msa0717830:intron 40.0%
GCAGAATAATTCACCATCTC+TGG + chr5_1:11731168-11731187 None:intergenic 40.0%
TGATCATACAGCATACCACT+TGG + chr5_1:11731207-11731226 None:intergenic 40.0%
GCAAACTCTCTCATAGTCAT+CGG + chr5_1:11731250-11731269 None:intergenic 40.0%
TTGCCACATTCCAAAGAAGA+AGG - chr5_1:11731266-11731285 Msa0717830:CDS 40.0%
! GTGCTTGCTTGTCTTTTTAG+GGG - chr5_1:11731355-11731374 Msa0717830:intron 40.0%
!! TGCTTGCTTGTCTTTTTAGG+GGG - chr5_1:11731356-11731375 Msa0717830:intron 40.0%
!! TTTTTAGGGGGCAAACTTCA+GGG - chr5_1:11731368-11731387 Msa0717830:intron 40.0%
AGATGCACTCTTTCAACAGA+GGG + chr5_1:11731438-11731457 None:intergenic 40.0%
TAGATGCACTCTTTCAACAG+AGG + chr5_1:11731439-11731458 None:intergenic 40.0%
CCTGTGGAAAAAAAAGGTAG+TGG + chr5_1:11731537-11731556 None:intergenic 40.0%
!!! CCACTACCTTTTTTTTCCAC+AGG - chr5_1:11731534-11731553 Msa0717830:CDS 40.0%
CTGGAACCTGTGGAAAAAAA+AGG + chr5_1:11731543-11731562 None:intergenic 40.0%
! ATTGCATAATCTGGAACCTG+TGG + chr5_1:11731553-11731572 None:intergenic 40.0%
ATGTATCTGCTGAACACAAC+AGG - chr5_1:11731669-11731688 Msa0717830:CDS 40.0%
! TAAAGAGGTTTTGCAATGGG+AGG + chr5_1:11731812-11731831 None:intergenic 40.0%
ACGAGTCCAAACAAAGAACA+TGG + chr5_1:11731911-11731930 None:intergenic 40.0%
ACCTGGAAATGGAATGACAT+GGG + chr5_1:11731999-11732018 None:intergenic 40.0%
AACCTGGAAATGGAATGACA+TGG + chr5_1:11732000-11732019 None:intergenic 40.0%
! CTAAGAACTCTGTCTTGTTC+TGG + chr5_1:11732032-11732051 None:intergenic 40.0%
ACACATACCTCTGTTTGACA+GGG + chr5_1:11732109-11732128 None:intergenic 40.0%
AACACATACCTCTGTTTGAC+AGG + chr5_1:11732110-11732129 None:intergenic 40.0%
! ACAGAGGTATGTGTTTGAAC+TGG - chr5_1:11732115-11732134 Msa0717830:intron 40.0%
! GAAGTATTTGGAGACAAGGA+TGG - chr5_1:11732306-11732325 Msa0717830:intron 40.0%
!!! CTTCCCTTCCATTTTGAGAT+TGG - chr5_1:11732342-11732361 Msa0717830:intron 40.0%
ACTGCTCAATAACTCTCCTA+AGG - chr5_1:11732445-11732464 Msa0717830:CDS 40.0%
CTGCTCAATAACTCTCCTAA+GGG - chr5_1:11732446-11732465 Msa0717830:CDS 40.0%
TCCCGTCATTATGTATAGCA+TGG - chr5_1:11732609-11732628 Msa0717830:CDS 40.0%
GCCATGCTATACATAATGAC+GGG + chr5_1:11732613-11732632 None:intergenic 40.0%
TAATGCAGGTACATGCAAGT+TGG - chr5_1:11732651-11732670 Msa0717830:CDS 40.0%
CTAAACCGAATGTGTATCCA+AGG + chr5_1:11732707-11732726 None:intergenic 40.0%
TTAAAGGGGAGAGTTGTCAA+AGG + chr5_1:11732756-11732775 None:intergenic 40.0%
GACAACTTGGGTACTTAAAG+GGG + chr5_1:11732770-11732789 None:intergenic 40.0%
!! AAGAATGGGCTAGACAACTT+GGG + chr5_1:11732782-11732801 None:intergenic 40.0%
!! AAAGAATGGGCTAGACAACT+TGG + chr5_1:11732783-11732802 None:intergenic 40.0%
AGATAAGGGTGGAAAAGACA+TGG + chr5_1:11732853-11732872 None:intergenic 40.0%
AGAGAAGAGGAAAAGCGAAG+CGG + chr5_1:11726809-11726828 None:intergenic 45.0%
TCGTTCCTCGTTCTTCTCAA+CGG - chr5_1:11726982-11727001 Msa0717830:CDS 45.0%
TTCTTCCGTTGAGAAGAACG+AGG + chr5_1:11726990-11727009 None:intergenic 45.0%
TCCAACGAAGAATGCATCGT+CGG + chr5_1:11727105-11727124 None:intergenic 45.0%
CTTCGTTGGAGAACCTATTC+CGG - chr5_1:11727115-11727134 Msa0717830:intron 45.0%
! TTCTTTTGAGCTTCATCGGC+CGG + chr5_1:11727137-11727156 None:intergenic 45.0%
! CTCACTCGTTCTTGGTGTAT+CGG + chr5_1:11727169-11727188 None:intergenic 45.0%
! AATGTTGTTTAGGGGGAGGA+AGG - chr5_1:11728020-11728039 Msa0717830:intron 45.0%
GGATTACATCGCTACGATTG+TGG - chr5_1:11728049-11728068 Msa0717830:CDS 45.0%
! GGAGATGTTTGAAACTCCTG+AGG - chr5_1:11728070-11728089 Msa0717830:CDS 45.0%
CTTCGGCTCTGTAAAACCAT+TGG + chr5_1:11728115-11728134 None:intergenic 45.0%
TGCAGGTGATTAAGGACCAT+GGG - chr5_1:11728223-11728242 Msa0717830:intron 45.0%
GTCTCGCTTTCTATTATGGC+AGG + chr5_1:11728640-11728659 None:intergenic 45.0%
CTTATCAGTTGCACGGACAT+TGG + chr5_1:11728689-11728708 None:intergenic 45.0%
GTCCGTGCAACTGATAAGAA+AGG - chr5_1:11728691-11728710 Msa0717830:intron 45.0%
CCCCTTTCTTATCAGTTGCA+CGG + chr5_1:11728696-11728715 None:intergenic 45.0%
CCGTGCAACTGATAAGAAAG+GGG - chr5_1:11728693-11728712 Msa0717830:intron 45.0%
! GAAGCTTGAGTGGACTTTAC+TGG - chr5_1:11728750-11728769 Msa0717830:intron 45.0%
CTGGATTTGTATTCTGGGTG+TGG - chr5_1:11728769-11728788 Msa0717830:intron 45.0%
!! TGCTTTGGAGCGTCTATTTC+TGG - chr5_1:11728811-11728830 Msa0717830:intron 45.0%
!! TGACTTGAAGAAATGGGCTG+TGG - chr5_1:11728942-11728961 Msa0717830:intron 45.0%
! AGAAGCTGATGATGAAGCGA+TGG - chr5_1:11729259-11729278 Msa0717830:intron 45.0%
GGATAATTCATCCGACTCTG+AGG - chr5_1:11729280-11729299 Msa0717830:intron 45.0%
!! ATCCGACTCTGAGGTATTTG+AGG - chr5_1:11729289-11729308 Msa0717830:intron 45.0%
AGACTACTCTCCATCTGCTA+TGG - chr5_1:11729317-11729336 Msa0717830:intron 45.0%
ATTGGGATCACCATAGCAGA+TGG + chr5_1:11729330-11729349 None:intergenic 45.0%
ACCCCTTCTTTCACCTCTAA+TGG - chr5_1:11729759-11729778 Msa0717830:CDS 45.0%
!! GAAATTTGCTGGTGGGTTTC+TGG - chr5_1:11730091-11730110 Msa0717830:CDS 45.0%
!! AATTTGCTGGTGGGTTTCTG+GGG - chr5_1:11730093-11730112 Msa0717830:CDS 45.0%
TCAAGCTCGAATGGGAATGA+TGG - chr5_1:11730151-11730170 Msa0717830:intron 45.0%
! CGGATGCGTGTTTTTCTTTG+GGG - chr5_1:11730203-11730222 Msa0717830:intron 45.0%
! AAGCAATGGCCTTACTTCAG+TGG + chr5_1:11730237-11730256 None:intergenic 45.0%
CTCGATACAACCTCATGAGT+TGG + chr5_1:11730376-11730395 None:intergenic 45.0%
TGAAAATTGTCAGCTGGCCA+AGG - chr5_1:11730555-11730574 Msa0717830:CDS 45.0%
AGCGATGATGAAAGGAGCTA+TGG - chr5_1:11730731-11730750 Msa0717830:intron 45.0%
GCGATGATGAAAGGAGCTAT+GGG - chr5_1:11730732-11730751 Msa0717830:intron 45.0%
CCCGTTCAGTTTAAGGATGA+AGG + chr5_1:11731122-11731141 None:intergenic 45.0%
GTGGTATGCTGTATGATCAC+AGG - chr5_1:11731208-11731227 Msa0717830:intron 45.0%
!! CTTTTTAGGGGGCAAACTTC+AGG - chr5_1:11731367-11731386 Msa0717830:intron 45.0%
CTTTAACAAGCACTCCCTTG+AGG + chr5_1:11731395-11731414 None:intergenic 45.0%
GATGCACTCTTTCAACAGAG+GGG + chr5_1:11731437-11731456 None:intergenic 45.0%
TCCCATGTCATTCCATTTCC+AGG - chr5_1:11731995-11732014 Msa0717830:intron 45.0%
GATGGAGAAGAACCTGGAAA+TGG + chr5_1:11732010-11732029 None:intergenic 45.0%
! GAACTCTGTCTTGTTCTGGA+TGG + chr5_1:11732028-11732047 None:intergenic 45.0%
CCAGACTGCTATAAGCTTTG+CGG - chr5_1:11732083-11732102 Msa0717830:intron 45.0%
! AAATGCAGTTGCTGTTCCTG+TGG - chr5_1:11732674-11732693 Msa0717830:CDS 45.0%
GAATGTGTATCCAAGGGCAA+GGG + chr5_1:11732700-11732719 None:intergenic 45.0%
CTTGCCCTTGGATACACATT+CGG - chr5_1:11732699-11732718 Msa0717830:CDS 45.0%
GCAATTCAAGGACTCTCTGA+TGG - chr5_1:11732726-11732745 Msa0717830:CDS 45.0%
TTCCAGGGCCTGAATATTCT+TGG + chr5_1:11732898-11732917 None:intergenic 45.0%
GAGAAGAGGAAAAGCGAAGC+GGG + chr5_1:11726808-11726827 None:intergenic 50.0%
! AGGAACGACGTCGTCTTGTT+TGG + chr5_1:11726970-11726989 None:intergenic 50.0%
TCCGACGATGCATTCTTCGT+TGG - chr5_1:11727101-11727120 Msa0717830:CDS 50.0%
! TCGTTCTTGGTGTATCGGTG+AGG + chr5_1:11727164-11727183 None:intergenic 50.0%
GTTTCACTACCGTGAAGCGA+AGG - chr5_1:11727307-11727326 Msa0717830:intron 50.0%
TACCGTGAAGCGAAGGTTGA+TGG - chr5_1:11727314-11727333 Msa0717830:intron 50.0%
! ACCGTGAAGCGAAGGTTGAT+GGG - chr5_1:11727315-11727334 Msa0717830:intron 50.0%
TCCCATCAACCTTCGCTTCA+CGG + chr5_1:11727319-11727338 None:intergenic 50.0%
! GCTGAATGTTGTTTAGGGGG+AGG - chr5_1:11728016-11728035 Msa0717830:intron 50.0%
TTAGGGGGAGGAAGGAAAAG+AGG - chr5_1:11728028-11728047 Msa0717830:intron 50.0%
GTGCAGGTGATTAAGGACCA+TGG - chr5_1:11728222-11728241 Msa0717830:intron 50.0%
! GGCAGGTGCTGTATCAATCA+GGG + chr5_1:11728623-11728642 None:intergenic 50.0%
! TGGCAGGTGCTGTATCAATC+AGG + chr5_1:11728624-11728643 None:intergenic 50.0%
!! ATGTCCACTGGCCTTTGCTT+TGG - chr5_1:11728796-11728815 Msa0717830:intron 50.0%
GAATGCTGGCAAAGAAGCTG+AGG - chr5_1:11729235-11729254 Msa0717830:CDS 50.0%
GGGCTCCCATGTATCATAAC+TGG + chr5_1:11729489-11729508 None:intergenic 50.0%
ACATACCTCAAGCCCTCGAT+GGG + chr5_1:11729509-11729528 None:intergenic 50.0%
AACATACCTCAAGCCCTCGA+TGG + chr5_1:11729510-11729529 None:intergenic 50.0%
GTGGTGAGACTTACAGGAAG+AGG + chr5_1:11729716-11729735 None:intergenic 50.0%
TGAGGAGTGGTGAGACTTAC+AGG + chr5_1:11729722-11729741 None:intergenic 50.0%
CCACTAACACCTTGACAAGG+TGG + chr5_1:11729942-11729961 None:intergenic 50.0%
! CCACCTTGTCAAGGTGTTAG+TGG - chr5_1:11729939-11729958 Msa0717830:intron 50.0%
CAGGAACAAAAATGCGCCGT+TGG - chr5_1:11729974-11729993 Msa0717830:intron 50.0%
GAACAAAAATGCGCCGTTGG+AGG - chr5_1:11729977-11729996 Msa0717830:intron 50.0%
!! TTTCTGGGGCGTTATGCTGT+GGG - chr5_1:11730107-11730126 Msa0717830:CDS 50.0%
GAATGGGAATGATGGCTGCA+GGG - chr5_1:11730159-11730178 Msa0717830:intron 50.0%
ATGATGGCTGCAGGGTCATA+TGG - chr5_1:11730167-11730186 Msa0717830:intron 50.0%
CACGCATCCGAAATTGAGGA+AGG + chr5_1:11730193-11730212 None:intergenic 50.0%
GAGCTCTTGCCACTGAAGTA+AGG - chr5_1:11730225-11730244 Msa0717830:intron 50.0%
! GGCCAAGGCATTAAACCTTG+AGG - chr5_1:11730570-11730589 Msa0717830:CDS 50.0%
GACTCTCAAAGTGCACCAAG+TGG - chr5_1:11731189-11731208 Msa0717830:intron 50.0%
GCAAACTTCAGGGACCTCAA+GGG - chr5_1:11731378-11731397 Msa0717830:intron 50.0%
GCTGAACACAACAGGCCATT+TGG - chr5_1:11731677-11731696 Msa0717830:CDS 50.0%
! ACAGGCCATTTGGTCGACTT+TGG - chr5_1:11731687-11731706 Msa0717830:CDS 50.0%
! GCCATTTGGTCGACTTTGGT+GGG - chr5_1:11731691-11731710 Msa0717830:CDS 50.0%
TCCCACCAAAGTCGACCAAA+TGG + chr5_1:11731695-11731714 None:intergenic 50.0%
! GTTCTGGATGGAGAAGAACC+TGG + chr5_1:11732016-11732035 None:intergenic 50.0%
CGAGAGAATGCAAGGCTACA+AGG - chr5_1:11732056-11732075 Msa0717830:intron 50.0%
CCGCAAAGCTTATAGCAGTC+TGG + chr5_1:11732086-11732105 None:intergenic 50.0%
CGAATGTGTATCCAAGGGCA+AGG + chr5_1:11732701-11732720 None:intergenic 50.0%
AGCCAAGAATATTCAGGCCC+TGG - chr5_1:11732893-11732912 Msa0717830:five_prime_UTR 50.0%
TGAGCTTCATCGGCCGGAAT+AGG + chr5_1:11727131-11727150 None:intergenic 55.0%
AGTTGCACGGACATTGGACC+CGG + chr5_1:11728683-11728702 None:intergenic 55.0%
TGATACATGGGAGCCCATCG+AGG - chr5_1:11729493-11729512 Msa0717830:intron 55.0%
GATACATGGGAGCCCATCGA+GGG - chr5_1:11729494-11729513 Msa0717830:intron 55.0%
!! GTTTCTGGGGCGTTATGCTG+TGG - chr5_1:11730106-11730125 Msa0717830:CDS 55.0%
TTATGCTGTGGGCCGTCTAG+TGG - chr5_1:11730118-11730137 Msa0717830:CDS 55.0%
CGAATGGGAATGATGGCTGC+AGG - chr5_1:11730158-11730177 Msa0717830:intron 55.0%
GGCAAACTTCAGGGACCTCA+AGG - chr5_1:11731377-11731396 Msa0717830:intron 55.0%
! GGCCATTTGGTCGACTTTGG+TGG - chr5_1:11731690-11731709 Msa0717830:CDS 55.0%
AAGGGCCGAGCCTCATAATC+AGG - chr5_1:11731739-11731758 Msa0717830:CDS 55.0%
TTTGCGGCCCTGTCAAACAG+AGG - chr5_1:11732099-11732118 Msa0717830:intron 55.0%
!! CACTGAGCGGGTTGAAGTGC+CGG - chr5_1:11726735-11726754 Msa0717830:three_prime_UTR 60.0%
!! ACTGAGCGGGTTGAAGTGCC+GGG - chr5_1:11726736-11726755 Msa0717830:three_prime_UTR 60.0%
GGGTGTGGAGCTATGTCCAC+TGG - chr5_1:11728784-11728803 Msa0717830:intron 60.0%
CGCTCCAAAGCAAAGGCCAG+TGG + chr5_1:11728803-11728822 None:intergenic 60.0%
!! TGTGGTGGGCCACCTTGTCA+AGG - chr5_1:11729930-11729949 Msa0717830:intron 60.0%
TATCCAAGGGCAAGGGCCAC+AGG + chr5_1:11732693-11732712 None:intergenic 60.0%
GTTCCTGTGGCCCTTGCCCT+TGG - chr5_1:11732687-11732706 Msa0717830:CDS 65.0%
GGGAGCCCATCGAGGGCTTG+AGG - chr5_1:11729501-11729520 Msa0717830:intron 70.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 11726731 11733061 11726731 ID=Msa0717830;Name=Msa0717830
chr5_1 mRNA 11726731 11733061 11726731 ID=Msa0717830-mRNA-1;Parent=Msa0717830;Name=Msa0717830-mRNA-1;_AED=0.15;_eAED=0.15;_QI=208|0.94|0.95|1|1|1|20|228|843
chr5_1 exon 11726731 11727133 11726731 ID=Msa0717830-mRNA-1:exon:4774;Parent=Msa0717830-mRNA-1
chr5_1 exon 11727672 11727775 11727672 ID=Msa0717830-mRNA-1:exon:4773;Parent=Msa0717830-mRNA-1
chr5_1 exon 11728032 11728101 11728032 ID=Msa0717830-mRNA-1:exon:4772;Parent=Msa0717830-mRNA-1
chr5_1 exon 11728193 11728236 11728193 ID=Msa0717830-mRNA-1:exon:4771;Parent=Msa0717830-mRNA-1
chr5_1 exon 11728316 11728417 11728316 ID=Msa0717830-mRNA-1:exon:4770;Parent=Msa0717830-mRNA-1
chr5_1 exon 11728505 11728623 11728505 ID=Msa0717830-mRNA-1:exon:4769;Parent=Msa0717830-mRNA-1
chr5_1 exon 11728989 11729076 11728989 ID=Msa0717830-mRNA-1:exon:4768;Parent=Msa0717830-mRNA-1
chr5_1 exon 11729177 11729263 11729177 ID=Msa0717830-mRNA-1:exon:4767;Parent=Msa0717830-mRNA-1
chr5_1 exon 11729348 11729440 11729348 ID=Msa0717830-mRNA-1:exon:4766;Parent=Msa0717830-mRNA-1
chr5_1 exon 11729551 11729880 11729551 ID=Msa0717830-mRNA-1:exon:4765;Parent=Msa0717830-mRNA-1
chr5_1 exon 11730071 11730137 11730071 ID=Msa0717830-mRNA-1:exon:4764;Parent=Msa0717830-mRNA-1
chr5_1 exon 11730270 11730328 11730270 ID=Msa0717830-mRNA-1:exon:4763;Parent=Msa0717830-mRNA-1
chr5_1 exon 11730413 11730661 11730413 ID=Msa0717830-mRNA-1:exon:4762;Parent=Msa0717830-mRNA-1
chr5_1 exon 11730775 11730840 11730775 ID=Msa0717830-mRNA-1:exon:4761;Parent=Msa0717830-mRNA-1
chr5_1 exon 11730943 11731157 11730943 ID=Msa0717830-mRNA-1:exon:4760;Parent=Msa0717830-mRNA-1
chr5_1 exon 11731258 11731348 11731258 ID=Msa0717830-mRNA-1:exon:4759;Parent=Msa0717830-mRNA-1
chr5_1 exon 11731445 11731564 11731445 ID=Msa0717830-mRNA-1:exon:4758;Parent=Msa0717830-mRNA-1
chr5_1 exon 11731653 11731760 11731653 ID=Msa0717830-mRNA-1:exon:4757;Parent=Msa0717830-mRNA-1
chr5_1 exon 11732419 11732518 11732419 ID=Msa0717830-mRNA-1:exon:4756;Parent=Msa0717830-mRNA-1
chr5_1 exon 11732609 11733061 11732609 ID=Msa0717830-mRNA-1:exon:4755;Parent=Msa0717830-mRNA-1
chr5_1 five_prime_UTR 11732854 11733061 11732854 ID=Msa0717830-mRNA-1:five_prime_utr;Parent=Msa0717830-mRNA-1
chr5_1 CDS 11732609 11732853 11732609 ID=Msa0717830-mRNA-1:cds;Parent=Msa0717830-mRNA-1
chr5_1 CDS 11732419 11732518 11732419 ID=Msa0717830-mRNA-1:cds;Parent=Msa0717830-mRNA-1
chr5_1 CDS 11731653 11731760 11731653 ID=Msa0717830-mRNA-1:cds;Parent=Msa0717830-mRNA-1
chr5_1 CDS 11731445 11731564 11731445 ID=Msa0717830-mRNA-1:cds;Parent=Msa0717830-mRNA-1
chr5_1 CDS 11731258 11731348 11731258 ID=Msa0717830-mRNA-1:cds;Parent=Msa0717830-mRNA-1
chr5_1 CDS 11730943 11731157 11730943 ID=Msa0717830-mRNA-1:cds;Parent=Msa0717830-mRNA-1
chr5_1 CDS 11730775 11730840 11730775 ID=Msa0717830-mRNA-1:cds;Parent=Msa0717830-mRNA-1
chr5_1 CDS 11730413 11730661 11730413 ID=Msa0717830-mRNA-1:cds;Parent=Msa0717830-mRNA-1
chr5_1 CDS 11730270 11730328 11730270 ID=Msa0717830-mRNA-1:cds;Parent=Msa0717830-mRNA-1
chr5_1 CDS 11730071 11730137 11730071 ID=Msa0717830-mRNA-1:cds;Parent=Msa0717830-mRNA-1
chr5_1 CDS 11729551 11729880 11729551 ID=Msa0717830-mRNA-1:cds;Parent=Msa0717830-mRNA-1
chr5_1 CDS 11729348 11729440 11729348 ID=Msa0717830-mRNA-1:cds;Parent=Msa0717830-mRNA-1
chr5_1 CDS 11729177 11729263 11729177 ID=Msa0717830-mRNA-1:cds;Parent=Msa0717830-mRNA-1
chr5_1 CDS 11728989 11729076 11728989 ID=Msa0717830-mRNA-1:cds;Parent=Msa0717830-mRNA-1
chr5_1 CDS 11728505 11728623 11728505 ID=Msa0717830-mRNA-1:cds;Parent=Msa0717830-mRNA-1
chr5_1 CDS 11728316 11728417 11728316 ID=Msa0717830-mRNA-1:cds;Parent=Msa0717830-mRNA-1
chr5_1 CDS 11728193 11728236 11728193 ID=Msa0717830-mRNA-1:cds;Parent=Msa0717830-mRNA-1
chr5_1 CDS 11728032 11728101 11728032 ID=Msa0717830-mRNA-1:cds;Parent=Msa0717830-mRNA-1
chr5_1 CDS 11727672 11727775 11727672 ID=Msa0717830-mRNA-1:cds;Parent=Msa0717830-mRNA-1
chr5_1 CDS 11726959 11727133 11726959 ID=Msa0717830-mRNA-1:cds;Parent=Msa0717830-mRNA-1
chr5_1 three_prime_UTR 11726731 11726958 11726731 ID=Msa0717830-mRNA-1:three_prime_utr;Parent=Msa0717830-mRNA-1
Gene Sequence

>Msa0717830

ATGCCTAAAAAACGCGTTCGTAAATCTTCCAAACAAGACGACGTCGTTCCTCGTTCTTCTCAACGGAAGAAATCCAAAAAATCTCCTGTTAATCCCGTTGAAGAAGAACTGGTTTCTCTTCTTCCTTCTAGAAGAAAGAAAGCGAAGCAATCTTCGGTCAATTCCGACGATGCATTCTTCGTTGGAGAACCTATTCCGGCCGATGAAGCTCAAAAGAAATGGCCTCACCGATACACCAAGAACGATGAATCGAGTGAGGATGAAAGTTTGAAGGCGAAGTTTCACTACCGTGAAGCGAAGGTTGATGGGATTTTATATAAGCTGGAGGATAATGCTTATGTCAAGGGGGAGGAAGGAAAAGAGGATTACATCGCTACGATTGTGGAGATGTTTGAAACTCCTGAGGAAGAACAATATTTTACTGCCCAATGGTTTTACAGAGCCGAAGACACTGTGATTAAGGACCATGGGAATCTAGTTGACAAAAAGAGGATTTTTAAATCTGATGTAAAAGATGAAAATCCTTTAGATTGTTTAGTTAGGAAAATAAACATTGTACAAATTTCTCCTGATGCTGCAAAAAAGAAGAAATTTCCTCCTTGTGACTTCTATTTTGATATGAAGTACACTGTGCCATATTTAACTTTCGCTAACATTGACAATGCACCTGCCATAATAGAAAGCGAGACTTCAACACTTTCAAGTGAATCCGGGTCCAATGTCCGTGCAACTGATAAGAAAGGGGTTAAAGAAAAACCAACTCAACTTAAAGAATCTAAGAAGCTTGAGTGGACTTTACTGGATTTGTATTCTGGGTGTGGAGCTATGTCCACTGGCCTTTGCTTTGGAGCGTCTATTTCTGGCATTAAGCTTGTGACGAAATGGGCTGTGGATATAAATGAACATGCTTGCGAGAGTCTAAAGCTGAATCACCCAGAAACACACGTGAGGAATGAACCCACAGAAGACTTTTTAAGTCTCCTAAAAGAGTGGGCTAAGCTTTGTGACGAGTTTGTACTGAATGGAGCAGAAAGTACAGATTCTGATTTGAATGCTGGCAAAGAAGCTGAGGAAGAAGCTGATGATGAAGCGATGGATAATTCATCCGACTCTGAGGTATTTGAGGTTGAAAGACTACTCTCCATCTGCTATGGTGATCCCAATGAAGATGAAAAACCAGGACTTTATTTTAAAGTGCATTGGAAGGGTTACGATTCCAGTTATGATACATGGGAGCCCATCGAGGGCTTGAGCGAGTGTAAAGATGCTATGAAAGATTTTGTTATAAATGGATATAAGGAAAAGATACTGCCTCTTCCTGGCCAAGCTGATTTTATTTGTGGTGGGCCACCTTGTCAAGGTGTTAGTGGTTTCAATCGCTTCAGGAACAAAAATGCGCCGTTGGAGGATGAAAAAAATAAGCAATTAATTGTTTACATGAACATTATTGATTTCTTGAAGCCTAAGTATGTTCTGATGGAGAATGTTGTAGACATTTTGAAATTTGCTGGTGGGTTTCTGGGGCGTTATGCTGTGGGCCGTCTAGTGGCCATGAATTATCAAGCTCGAATGGGAATGATGGCTGCAGGGTCATATGGCCTTCCTCAATTTCGGATGCGTGTTTTTCTTTGGGGAGCTCTTGCCACTGAAAAATTACCGTCATATCCGTTACCAACTCATGAGGTTGTATCGAGATCAGTCATCCCCACTGAGTTTGAAGTAAGAACTGATAGAAATAGAGATGAAATTACAGTCGCATATTCCACTAATGAAAATTGTCAGCTGGCCAAGGCATTAAACCTTGAGGATGCAATTAATGATCTCCCACCAGTTGAAAATGATGATAGCGATGATGAAAGGAGCTATGGGACTACTCCTCGTACTGATTTTCAAAAATATATCAGATTAAAGAGAAGTGAGATGGTGAATTATTCTGCTGACTCTCAAAGTGCACCAAGTGGTATGCTGTATGATCACAGGCCTTTGAAATTAAATACCGATGACTATGAGAGAGTTTGCCACATTCCAAAGAAGAAGGGGGCAAACTTCAGGGACCTCAAGGGAGTGCTTGTTAAAGAAAACAAGGTGGAATGGGACCCCTCTGTTGAAAGAGTGCATCTAAAATCTGGAAAGCCTTTGGTTCCAGATTATGCAATGACATTTGTTCGTGGGACCTCTTCTAAGCCATTTGGTCGACTTTGGTGGGACGAAATTGTGTCTACTGTTGTAACAAGGGCCGAGCCTCATAATCAGGTTCTTCTCCATCCAGAACAAGACAGAGTTCTTAGTATTCGAGAGAATGCAAGGCTACAAGGATTTCCAGACTGCTATAAGCTTTGCGGCCCTGTCAAACAGAGGTACATGCAAGTTGGAAATGCAGTTGCTGTTCCTGTGGCCCTTGCCCTTGGATACACATTCGGTTTAGCAATTCAAGGACTCTCTGATGGCAGTCCTTTGACAACTCTCCCCTTTAAGTACCCAAGTTGTCTAGCCCATTCTTTAGATGTAGTTGATGATGATGGCTCAAGCTGA
Protein sequence

>Msa0717830

MPKKRVRKSSKQDDVVPRSSQRKKSKKSPVNPVEEELVSLLPSRRKKAKQSSVNSDDAFFVGEPIPADEAQKKWPHRYTKNDESSEDESLKAKFHYREAKVDGILYKLEDNAYVKGEEGKEDYIATIVEMFETPEEEQYFTAQWFYRAEDTVIKDHGNLVDKKRIFKSDVKDENPLDCLVRKINIVQISPDAAKKKKFPPCDFYFDMKYTVPYLTFANIDNAPAIIESETSTLSSESGSNVRATDKKGVKEKPTQLKESKKLEWTLLDLYSGCGAMSTGLCFGASISGIKLVTKWAVDINEHACESLKLNHPETHVRNEPTEDFLSLLKEWAKLCDEFVLNGAESTDSDLNAGKEAEEEADDEAMDNSSDSEVFEVERLLSICYGDPNEDEKPGLYFKVHWKGYDSSYDTWEPIEGLSECKDAMKDFVINGYKEKILPLPGQADFICGGPPCQGVSGFNRFRNKNAPLEDEKNKQLIVYMNIIDFLKPKYVLMENVVDILKFAGGFLGRYAVGRLVAMNYQARMGMMAAGSYGLPQFRMRVFLWGALATEKLPSYPLPTHEVVSRSVIPTEFEVRTDRNRDEITVAYSTNENCQLAKALNLEDAINDLPPVENDDSDDERSYGTTPRTDFQKYIRLKRSEMVNYSADSQSAPSGMLYDHRPLKLNTDDYERVCHIPKKKGANFRDLKGVLVKENKVEWDPSVERVHLKSGKPLVPDYAMTFVRGTSSKPFGRLWWDEIVSTVVTRAEPHNQVLLHPEQDRVLSIRENARLQGFPDCYKLCGPVKQRYMQVGNAVAVPVALALGYTFGLAIQGLSDGSPLTTLPFKYPSCLAHSLDVVDDDGSS*