AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0626010

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0626010 MtrunA17_Chr4g0001601 97.561 82 2 0 1 82 1 82 9.64e-55 164
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0626010 AT1G16000.1 53.488 86 36 1 1 82 1 86 1.43e-29 100
Msa0626010 AT1G80890.1 58.537 82 32 1 1 82 1 80 1.61e-22 82.8

Find 22 sgRNAs with CRISPR-Local

Find 234 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAAATTTCAACAAAATGTT+AGG 0.214365 4_3:+5398845 None:intergenic
CCAGTAACTCTAGATTTAAA+AGG 0.295919 4_3:+5402128 Msa0626010:three_prime_UTR
AAAAGCGGCGAAGGTGGATT+TGG 0.337625 4_3:+5398965 Msa0626010:CDS
CCAAGTAATCTTGATGAGAT+TGG 0.353408 4_3:-5402012 None:intergenic
GCTGTTTAAAGCATAGTAAT+AGG 0.359454 4_3:+5402330 Msa0626010:three_prime_UTR
CCAATCTCATCAAGATTACT+TGG 0.403450 4_3:+5402012 Msa0626010:CDS
CTTTAAACAGCCAAATCATA+TGG 0.414121 4_3:-5402318 None:intergenic
GCGAAGGTGGATTTGGATCA+AGG 0.444650 4_3:+5398972 Msa0626010:CDS
AAAATTTCAACAAAATGTTA+GGG 0.452122 4_3:+5398846 None:intergenic
CGAGATCATTTGGAAGAAGC+GGG 0.489411 4_3:-5402076 None:intergenic
TTTCAACAAAATGTTAGGGC+TGG 0.498241 4_3:+5398850 None:intergenic
TAAAGCATAGTAATAGGAGA+AGG 0.548208 4_3:+5402336 Msa0626010:three_prime_UTR
TCGAGATCATTTGGAAGAAG+CGG 0.559001 4_3:-5402077 None:intergenic
AAGGTGAAAAGCGGCGAAGG+TGG 0.563824 4_3:+5398959 Msa0626010:CDS
GGCTGGTTTGATAGAGCAGT+AGG 0.570320 4_3:+5398867 Msa0626010:five_prime_UTR
GCAAAGGTGAAAAGCGGCGA+AGG 0.571778 4_3:+5398956 Msa0626010:CDS
CCATGGTTTCTTATGAACAG+AGG 0.615850 4_3:+5399073 Msa0626010:CDS
GCAAAAGCAAAGGTGAAAAG+CGG 0.624401 4_3:+5398950 Msa0626010:CDS
GGTTTGATAGAGCAGTAGGA+AGG 0.628990 4_3:+5398871 Msa0626010:five_prime_UTR
TTGAATCAAATTCTATATAG+CGG 0.633543 4_3:+5398995 Msa0626010:CDS
CCTCTGTTCATAAGAAACCA+TGG 0.639570 4_3:-5399073 None:intergenic
GAGCAACGAAGCAAAAGCAA+AGG 0.650954 4_3:+5398940 Msa0626010:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAGTAACAAAATTATATAT+TGG + chr4_3:5401256-5401275 Msa0626010:intron 10.0%
!! AATTTAAATAGACAAATAAT+AGG - chr4_3:5401809-5401828 None:intergenic 10.0%
!! TATTATTTGTCTATTTAAAT+TGG + chr4_3:5401808-5401827 Msa0626010:intron 10.0%
!!! TATTGTCAATTTTTTGAAAT+TGG + chr4_3:5399137-5399156 Msa0626010:intron 15.0%
!! AGATTATGAATATTTCAAAA+AGG + chr4_3:5399322-5399341 Msa0626010:intron 15.0%
!!! TTGATTTTGTAAAATTGAAT+TGG + chr4_3:5401087-5401106 Msa0626010:intron 15.0%
!! TTAGTAACAGAATTATATAT+TGG + chr4_3:5401189-5401208 Msa0626010:intron 15.0%
!! TTAGTAACAGAATTATATAT+TGG + chr4_3:5401189-5401208 Msa0626010:intron 15.0%
!! ACTAACTACTTTATTAATAA+AGG - chr4_3:5401517-5401536 None:intergenic 15.0%
!! TTTATTAATAAAGTAGTTAG+TGG + chr4_3:5401516-5401535 Msa0626010:intron 15.0%
!! AACTAAATGAAATGTATAAA+TGG - chr4_3:5401950-5401969 None:intergenic 15.0%
!! TTGAATCAAATTCTATATAG+CGG + chr4_3:5398995-5399014 Msa0626010:CDS 20.0%
!!! TTTGGTTTTACATCAATAAT+GGG + chr4_3:5399176-5399195 Msa0626010:intron 20.0%
!! ATAGTAAGTGGTTAAATATA+AGG + chr4_3:5399382-5399401 Msa0626010:intron 20.0%
!! TTAATAACTTCCTATCAATT+TGG - chr4_3:5399409-5399428 None:intergenic 20.0%
!!! ATTAAGTCCCTTTATTTTTT+TGG - chr4_3:5399656-5399675 None:intergenic 20.0%
!! ATAGTAAGTGGTTATATATA+GGG + chr4_3:5399678-5399697 Msa0626010:intron 20.0%
!!! AATTTTTCAGCAACATTTTT+TGG - chr4_3:5400257-5400276 None:intergenic 20.0%
!! AAAAAATGTTGCTGAAAAAT+TGG + chr4_3:5400256-5400275 Msa0626010:intron 20.0%
!! AAAAATGTTGCTGAAAAATT+GGG + chr4_3:5400257-5400276 Msa0626010:intron 20.0%
!!! GAAATACAATCTTTTAAACT+AGG - chr4_3:5400691-5400710 None:intergenic 20.0%
!! TTAATATTGTGACTGAAAAA+AGG - chr4_3:5400741-5400760 None:intergenic 20.0%
!! ATTATATATTGGCGATTATT+TGG + chr4_3:5401200-5401219 Msa0626010:intron 20.0%
!! TTATATATTGGCGATTATTT+GGG + chr4_3:5401201-5401220 Msa0626010:intron 20.0%
!! ATTATATATTGGCGATTATT+TGG + chr4_3:5401200-5401219 Msa0626010:intron 20.0%
!! TTATATATTGGCGATTATTT+GGG + chr4_3:5401201-5401220 Msa0626010:intron 20.0%
!! ATTATATATTGGCGATTATT+TGG + chr4_3:5401200-5401219 Msa0626010:intron 20.0%
!! TTATATATTGGCGATTATTT+GGG + chr4_3:5401201-5401220 Msa0626010:intron 20.0%
!!! CTCATATTAAGTGTATTTTA+AGG + chr4_3:5401418-5401437 Msa0626010:intron 20.0%
!!! TGGAACAATTTTTATCATAT+AGG - chr4_3:5402301-5402320 None:intergenic 20.0%
!! AAAAATTGTTCCATATGATT+TGG + chr4_3:5402308-5402327 Msa0626010:three_prime_UTR 20.0%
!!! CTTTGGTTTTACATCAATAA+TGG + chr4_3:5399175-5399194 Msa0626010:intron 25.0%
!!! TTTTAGAACAACTACCAATT+TGG - chr4_3:5399292-5399311 None:intergenic 25.0%
! AATATAAGGACCAAATTGAT+AGG + chr4_3:5399396-5399415 Msa0626010:intron 25.0%
! ATAGGAAGTTATTAAACCAT+TGG + chr4_3:5399414-5399433 Msa0626010:intron 25.0%
! TAGGAAGTTATTAAACCATT+GGG + chr4_3:5399415-5399434 Msa0626010:intron 25.0%
!!! CCTTTATTTTTTTGGAAACT+CGG - chr4_3:5399648-5399667 None:intergenic 25.0%
! CGAGTTTCCAAAAAAATAAA+GGG + chr4_3:5399646-5399665 Msa0626010:intron 25.0%
! GATAGTAAGTGGTTATATAT+AGG + chr4_3:5399677-5399696 Msa0626010:intron 25.0%
! TAGTAAGTGGTTATATATAG+GGG + chr4_3:5399679-5399698 Msa0626010:intron 25.0%
! CAACTTAATTAAGTGTTTAG+AGG + chr4_3:5399703-5399722 Msa0626010:intron 25.0%
! AATAAGCTTAAAACAGCTTA+TGG + chr4_3:5399858-5399877 Msa0626010:intron 25.0%
! TCAAATAAGCCAATTCAATA+AGG + chr4_3:5399949-5399968 Msa0626010:intron 25.0%
!! TGGATTAAAAGTGATTTTTG+AGG - chr4_3:5400187-5400206 None:intergenic 25.0%
! TGATTTAGATTTAGCAAAGT+TGG - chr4_3:5400576-5400595 None:intergenic 25.0%
! AAAAAGAAGATGGGATAAAA+AGG + chr4_3:5400654-5400673 Msa0626010:intron 25.0%
! AGAAAGGAAAAAAAAACTTG+AGG + chr4_3:5400868-5400887 Msa0626010:intron 25.0%
! GAAAGGAAAAAAAAACTTGA+GGG + chr4_3:5400869-5400888 Msa0626010:intron 25.0%
! AAAGGAAAAAAAAACTTGAG+GGG + chr4_3:5400870-5400889 Msa0626010:intron 25.0%
! GAAACATACAATAACAGTAT+GGG - chr4_3:5400983-5401002 None:intergenic 25.0%
! AGAAACATACAATAACAGTA+TGG - chr4_3:5400984-5401003 None:intergenic 25.0%
!!! AATAAAGGTATTGTAGTCAA+TGG - chr4_3:5401502-5401521 None:intergenic 25.0%
! GAAAAAGACAATTAATTCCT+CGG + chr4_3:5401588-5401607 Msa0626010:intron 25.0%
!! TGAGTTGTATATTTGATAGT+AGG + chr4_3:5401690-5401709 Msa0626010:intron 25.0%
!! GAGTTGTATATTTGATAGTA+GGG + chr4_3:5401691-5401710 Msa0626010:intron 25.0%
!! CGTAATTTTGAATTTCCAAA+CGG + chr4_3:5401920-5401939 Msa0626010:intron 25.0%
!! GTAATTTTGAATTTCCAAAC+GGG + chr4_3:5401921-5401940 Msa0626010:intron 25.0%
! TCATTTAGTTACTTAATCTG+TGG + chr4_3:5401960-5401979 Msa0626010:intron 25.0%
AAACCATGGTACAGAAAAAA+CGG - chr4_3:5399062-5399081 None:intergenic 30.0%
TAACTAGTAAACCACCAAAT+TGG + chr4_3:5399275-5399294 Msa0626010:intron 30.0%
ATTGGGACTTAATAAACTCA+GGG + chr4_3:5399432-5399451 Msa0626010:intron 30.0%
CCGAGTTTCCAAAAAAATAA+AGG + chr4_3:5399645-5399664 Msa0626010:intron 30.0%
AAACACTTGTGAAACAGTTT+GGG - chr4_3:5399913-5399932 None:intergenic 30.0%
TAAACACTTGTGAAACAGTT+TGG - chr4_3:5399914-5399933 None:intergenic 30.0%
!! AACTAAGAGCCTTATTGAAT+TGG - chr4_3:5399961-5399980 None:intergenic 30.0%
!! TAAGGCTCTTAGTTTTTATC+AGG + chr4_3:5399967-5399986 Msa0626010:intron 30.0%
ACTTCATTAACACTTAGTCA+AGG - chr4_3:5400032-5400051 None:intergenic 30.0%
AAGTGTTAATGAAGTTCTTC+AGG + chr4_3:5400037-5400056 Msa0626010:intron 30.0%
!! CCAAAGATATTTGCTTTTCT+TGG - chr4_3:5400207-5400226 None:intergenic 30.0%
CCAAGAAAAGCAAATATCTT+TGG + chr4_3:5400204-5400223 Msa0626010:intron 30.0%
!! TTTTCAGCAACATTTTTTGG+AGG - chr4_3:5400254-5400273 None:intergenic 30.0%
TATTGCTAAATCTCTCTTAC+TGG + chr4_3:5400348-5400367 Msa0626010:intron 30.0%
!! GTTTGACCTATAGTTTTACT+TGG + chr4_3:5400370-5400389 Msa0626010:intron 30.0%
!! ATGTTGAAGCACTGATAAAA+GGG - chr4_3:5400440-5400459 None:intergenic 30.0%
TTTGTGTCTGGAAATGTTAA+TGG - chr4_3:5400526-5400545 None:intergenic 30.0%
!! AGATTTAGCAAAGTTGGTTT+TGG - chr4_3:5400570-5400589 None:intergenic 30.0%
! ATCTTCTTTTTCCTTACAAC+AGG - chr4_3:5400645-5400664 None:intergenic 30.0%
TGTTGTAAGGAAAAAGAAGA+TGG + chr4_3:5400644-5400663 Msa0626010:intron 30.0%
GTTGTAAGGAAAAAGAAGAT+GGG + chr4_3:5400645-5400664 Msa0626010:intron 30.0%
! TTTCATGCATTGATGCATTT+AGG - chr4_3:5400844-5400863 None:intergenic 30.0%
AGTATGGGTGAAATTCATAT+TGG - chr4_3:5400968-5400987 None:intergenic 30.0%
! GAGTTTGAAATGAAGTGATT+TGG + chr4_3:5401118-5401137 Msa0626010:intron 30.0%
TAATGGCAGTTAGGATTTAA+TGG + chr4_3:5401227-5401246 Msa0626010:intron 30.0%
TAATGGCAGTTAGGATTTAA+TGG + chr4_3:5401227-5401246 Msa0626010:intron 30.0%
TAATAAAGTAGTTAGTGGAG+TGG + chr4_3:5401521-5401540 Msa0626010:intron 30.0%
AACCTAGATACAATAAACGA+AGG + chr4_3:5401557-5401576 Msa0626010:intron 30.0%
TGGTGTTCTATAATCCTATT+TGG + chr4_3:5401828-5401847 Msa0626010:intron 30.0%
AATTCATTGTCTCCAAATCT+CGG - chr4_3:5401865-5401884 None:intergenic 30.0%
!! AAATGCTTTTCGAGATCATT+TGG - chr4_3:5402089-5402108 None:intergenic 30.0%
!! CCTTTTAAATCTAGAGTTAC+TGG - chr4_3:5402131-5402150 None:intergenic 30.0%
CCAGTAACTCTAGATTTAAA+AGG + chr4_3:5402128-5402147 Msa0626010:three_prime_UTR 30.0%
!!! AAAGGCATTAGATATTTTGC+TGG + chr4_3:5402146-5402165 Msa0626010:three_prime_UTR 30.0%
GTACAACAACTTGAGAAAAA+TGG - chr4_3:5402211-5402230 None:intergenic 30.0%
CTTTAAACAGCCAAATCATA+TGG - chr4_3:5402321-5402340 None:intergenic 30.0%
! GCTGTTTAAAGCATAGTAAT+AGG + chr4_3:5402330-5402349 Msa0626010:three_prime_UTR 30.0%
TAAAGCATAGTAATAGGAGA+AGG + chr4_3:5402336-5402355 Msa0626010:three_prime_UTR 30.0%
GGTTTCGAAGTTCTTATCTT+TGG + chr4_3:5399158-5399177 Msa0626010:intron 35.0%
TAGAACAACTACCAATTTGG+TGG - chr4_3:5399289-5399308 None:intergenic 35.0%
CTGAGTTTATTAAGTCCCAA+TGG - chr4_3:5399433-5399452 None:intergenic 35.0%
CATTGGGACTTAATAAACTC+AGG + chr4_3:5399431-5399450 Msa0626010:intron 35.0%
TTGGGACTTAATAAACTCAG+GGG + chr4_3:5399433-5399452 Msa0626010:intron 35.0%
! GGGACTTAATTGATAGTAAG+TGG + chr4_3:5399666-5399685 Msa0626010:intron 35.0%
!! GCTTATTTTCTAAGCTCTCT+AGG - chr4_3:5399845-5399864 None:intergenic 35.0%
GCTTATTTGAGCTTATCTAC+TGG - chr4_3:5399939-5399958 None:intergenic 35.0%
AAAAACCTCAACTGGAAAAC+TGG - chr4_3:5400102-5400121 None:intergenic 35.0%
! TTTCCAGTTGAGGTTTTTGA+TGG + chr4_3:5400104-5400123 Msa0626010:intron 35.0%
ATACCATCAAAAACCTCAAC+TGG - chr4_3:5400110-5400129 None:intergenic 35.0%
ACCAACACACACATTGAAAA+AGG - chr4_3:5400311-5400330 None:intergenic 35.0%
ACGAGACCAAGTAAAACTAT+AGG - chr4_3:5400379-5400398 None:intergenic 35.0%
!! CATGTTGAAGCACTGATAAA+AGG - chr4_3:5400441-5400460 None:intergenic 35.0%
! ATTTCGAAGTGATTTGTGTC+TGG - chr4_3:5400538-5400557 None:intergenic 35.0%
AAGAAGATGGGATAAAAAGG+AGG + chr4_3:5400657-5400676 Msa0626010:intron 35.0%
AAAAAAGGTGAGATAGAGAG+AGG - chr4_3:5400726-5400745 None:intergenic 35.0%
TCGTAACAATTGCTTTCTCA+AGG - chr4_3:5400815-5400834 None:intergenic 35.0%
TTGAGAAAGCAATTGTTACG+AGG + chr4_3:5400814-5400833 Msa0626010:intron 35.0%
TGAGAAAGCAATTGTTACGA+GGG + chr4_3:5400815-5400834 Msa0626010:intron 35.0%
CAATGCATGAAAACAGAGAA+AGG + chr4_3:5400852-5400871 Msa0626010:intron 35.0%
!!! TTTTTTGGGATCTTTGACCA+GGG - chr4_3:5400899-5400918 None:intergenic 35.0%
!!! TCGATGTGTTCCACTTTTTT+GGG - chr4_3:5400913-5400932 None:intergenic 35.0%
TCTTTCCTTCATCTGTGTTT+GGG + chr4_3:5401037-5401056 Msa0626010:intron 35.0%
! TGAAGTGATTTGGACAGTAT+AGG + chr4_3:5401128-5401147 Msa0626010:intron 35.0%
TGGACAGTATAGGAAACAAT+AGG + chr4_3:5401138-5401157 Msa0626010:intron 35.0%
CAGTATAGGAAACAATAGGA+AGG + chr4_3:5401142-5401161 Msa0626010:intron 35.0%
AATAGGAAGGATGACACATT+TGG + chr4_3:5401155-5401174 Msa0626010:intron 35.0%
! GGCGATTATTTGGGATTTAA+TGG + chr4_3:5401210-5401229 Msa0626010:intron 35.0%
! TTTGGGATTTAATGGCAGTT+AGG + chr4_3:5401218-5401237 Msa0626010:intron 35.0%
! GGCGATTATTTGGGATTTAA+TGG + chr4_3:5401210-5401229 Msa0626010:intron 35.0%
! TTTGGGATTTAATGGCAGTT+AGG + chr4_3:5401218-5401237 Msa0626010:intron 35.0%
! GGCGATTATTTGGGATTTAA+TGG + chr4_3:5401210-5401229 Msa0626010:intron 35.0%
! TTTGGGATTTAATGGCAGTT+AGG + chr4_3:5401218-5401237 Msa0626010:intron 35.0%
CACCTTCGTTTATTGTATCT+AGG - chr4_3:5401562-5401581 None:intergenic 35.0%
!! ACAATAAACGAAGGTGTCAA+TGG + chr4_3:5401566-5401585 Msa0626010:intron 35.0%
!!! GTCATTTTAGAATACTACCG+AGG - chr4_3:5401608-5401627 None:intergenic 35.0%
! CGTTAAGTTTGCTTGATGTT+TGG - chr4_3:5401902-5401921 None:intergenic 35.0%
TGTATAAATGGATACCCGTT+TGG - chr4_3:5401938-5401957 None:intergenic 35.0%
CCAAGTAATCTTGATGAGAT+TGG - chr4_3:5402015-5402034 None:intergenic 35.0%
CCAATCTCATCAAGATTACT+TGG + chr4_3:5402012-5402031 Msa0626010:CDS 35.0%
TGGAAAAAGCTGATAAAGCA+AGG + chr4_3:5402032-5402051 Msa0626010:CDS 35.0%
CCGAAAAAACTCGAAAGAAT+GGG - chr4_3:5402176-5402195 None:intergenic 35.0%
!!! CCCATTCTTTCGAGTTTTTT+CGG + chr4_3:5402173-5402192 Msa0626010:three_prime_UTR 35.0%
ACCGAAAAAACTCGAAAGAA+TGG - chr4_3:5402177-5402196 None:intergenic 35.0%
!!! ATTCTTTCGAGTTTTTTCGG+TGG + chr4_3:5402176-5402195 Msa0626010:three_prime_UTR 35.0%
!!! TTCTTTCGAGTTTTTTCGGT+GGG + chr4_3:5402177-5402196 Msa0626010:three_prime_UTR 35.0%
GCAAAAGCAAAGGTGAAAAG+CGG + chr4_3:5398950-5398969 Msa0626010:CDS 40.0%
CCTCTGTTCATAAGAAACCA+TGG - chr4_3:5399076-5399095 None:intergenic 40.0%
CCATGGTTTCTTATGAACAG+AGG + chr4_3:5399073-5399092 Msa0626010:CDS 40.0%
! GCGACGAAATTGATAGTAAG+TGG + chr4_3:5399370-5399389 Msa0626010:intron 40.0%
GACTTAATAAACTCAGGGGT+TGG + chr4_3:5399437-5399456 Msa0626010:intron 40.0%
!! TTGAACTTTGAGACCTAGAG+AGG - chr4_3:5399498-5399517 None:intergenic 40.0%
CTGCCTATGATTTACGTGTT+GGG + chr4_3:5399527-5399546 Msa0626010:intron 40.0%
CTATGATTTACGTGTTGGGT+CGG + chr4_3:5399531-5399550 Msa0626010:intron 40.0%
TCAAGGATCAACTAATCTGG+GGG - chr4_3:5399617-5399636 None:intergenic 40.0%
CTCAAGGATCAACTAATCTG+GGG - chr4_3:5399618-5399637 None:intergenic 40.0%
GCTCAAGGATCAACTAATCT+GGG - chr4_3:5399619-5399638 None:intergenic 40.0%
AGCTCAAGGATCAACTAATC+TGG - chr4_3:5399620-5399639 None:intergenic 40.0%
! AGATTAGTTGATCCTTGAGC+TGG + chr4_3:5399619-5399638 Msa0626010:intron 40.0%
TTCTTCAGGAAATCCCAGTT+TGG + chr4_3:5400051-5400070 Msa0626010:intron 40.0%
AGCAAAGAAAGAGCCAAACT+GGG - chr4_3:5400067-5400086 None:intergenic 40.0%
TCAACTGGAAAACTGGTGAA+AGG - chr4_3:5400095-5400114 None:intergenic 40.0%
! TTTCACCAGTTTTCCAGTTG+AGG + chr4_3:5400094-5400113 Msa0626010:intron 40.0%
!!! CTAGGATTTTTTAGGCGAGA+GGG - chr4_3:5400152-5400171 None:intergenic 40.0%
TCGCCTAAAAAATCCTAGCT+TGG + chr4_3:5400154-5400173 Msa0626010:intron 40.0%
!!! CTGCCAAGCTAGGATTTTTT+AGG - chr4_3:5400160-5400179 None:intergenic 40.0%
CACACACATTGAAAAAGGCT+TGG - chr4_3:5400306-5400325 None:intergenic 40.0%
!!! GCCTTTTTCAATGTGTGTGT+TGG + chr4_3:5400307-5400326 Msa0626010:intron 40.0%
!! TCAATGTGTGTGTTGGTTCA+AGG + chr4_3:5400314-5400333 Msa0626010:intron 40.0%
AATGACGCTTCAGTAGTTAG+AGG - chr4_3:5400406-5400425 None:intergenic 40.0%
TACAACAGGTCTTAGTGCAT+GGG - chr4_3:5400631-5400650 None:intergenic 40.0%
TTACAACAGGTCTTAGTGCA+TGG - chr4_3:5400632-5400651 None:intergenic 40.0%
ATGCACTAAGACCTGTTGTA+AGG + chr4_3:5400631-5400650 Msa0626010:intron 40.0%
TAGAGAGAGGAGCTAATTGT+AGG - chr4_3:5400713-5400732 None:intergenic 40.0%
! TAATTTTCCCCCATAGAGTG+TGG - chr4_3:5400782-5400801 None:intergenic 40.0%
!!! CTTTTTTGGGATCTTTGACC+AGG - chr4_3:5400900-5400919 None:intergenic 40.0%
GGTCAAAGATCCCAAAAAAG+TGG + chr4_3:5400900-5400919 Msa0626010:intron 40.0%
!!! GTCGATGTGTTCCACTTTTT+TGG - chr4_3:5400914-5400933 None:intergenic 40.0%
GGGTGAAATTCATATTGGAC+AGG - chr4_3:5400963-5400982 None:intergenic 40.0%
CAAACACAGATGAAGGAAAG+AGG - chr4_3:5401038-5401057 None:intergenic 40.0%
CTCTTTCCTTCATCTGTGTT+TGG + chr4_3:5401036-5401055 Msa0626010:intron 40.0%
GAAGGATGACACATTTGGTT+AGG + chr4_3:5401160-5401179 Msa0626010:intron 40.0%
GTTGTTCCTGTTCTGTACTT+TGG + chr4_3:5401733-5401752 Msa0626010:intron 40.0%
CGGTTTATAGCACACCAAAT+AGG - chr4_3:5401845-5401864 None:intergenic 40.0%
GTGTGCTATAAACCGAGATT+TGG + chr4_3:5401850-5401869 Msa0626010:intron 40.0%
!!! ATTGGTGTTTTGATCCTGCA+AGG - chr4_3:5401997-5402016 None:intergenic 40.0%
TCGAGATCATTTGGAAGAAG+CGG - chr4_3:5402080-5402099 None:intergenic 40.0%
GGTTTGATAGAGCAGTAGGA+AGG + chr4_3:5398871-5398890 Msa0626010:five_prime_UTR 45.0%
GAGCAACGAAGCAAAAGCAA+AGG + chr4_3:5398940-5398959 Msa0626010:CDS 45.0%
!! GAGAAGAAGCATGTTTTCGC+TGG + chr4_3:5399019-5399038 Msa0626010:CDS 45.0%
!!! CTGCCGTTTTTTCTGTACCA+TGG + chr4_3:5399056-5399075 Msa0626010:CDS 45.0%
CGTAAATCATAGGCAGCTAG+AGG - chr4_3:5399523-5399542 None:intergenic 45.0%
GCTGCCTATGATTTACGTGT+TGG + chr4_3:5399526-5399545 Msa0626010:intron 45.0%
CGACCCAACACGTAAATCAT+AGG - chr4_3:5399533-5399552 None:intergenic 45.0%
CAAGGATCAACTAATCTGGG+GGG - chr4_3:5399616-5399635 None:intergenic 45.0%
GAGCAAAGAAAGAGCCAAAC+TGG - chr4_3:5400068-5400087 None:intergenic 45.0%
!!! GCTAGGATTTTTTAGGCGAG+AGG - chr4_3:5400153-5400172 None:intergenic 45.0%
TTTATGCATGCACTGAGCTG+AGG + chr4_3:5400466-5400485 Msa0626010:intron 45.0%
TTATGCATGCACTGAGCTGA+GGG + chr4_3:5400467-5400486 Msa0626010:intron 45.0%
TCGAAAGATGCCACACTCTA+TGG + chr4_3:5400769-5400788 Msa0626010:intron 45.0%
CGAAAGATGCCACACTCTAT+GGG + chr4_3:5400770-5400789 Msa0626010:intron 45.0%
GAAAGATGCCACACTCTATG+GGG + chr4_3:5400771-5400790 Msa0626010:intron 45.0%
AAAGATGCCACACTCTATGG+GGG + chr4_3:5400772-5400791 Msa0626010:intron 45.0%
AAAAACTTGAGGGGAAACCC+TGG + chr4_3:5400879-5400898 Msa0626010:intron 45.0%
ACTTGCCCAAACACAGATGA+AGG - chr4_3:5401045-5401064 None:intergenic 45.0%
GTTTGGGCAAGTGTGATCAA+TGG + chr4_3:5401053-5401072 Msa0626010:intron 45.0%
GGCAAGTGTGATCAATGGTT+TGG + chr4_3:5401058-5401077 Msa0626010:intron 45.0%
CTCTGTCCAAAGTACAGAAC+AGG - chr4_3:5401742-5401761 None:intergenic 45.0%
TGGAGCTTATGTTTCCTTGC+AGG + chr4_3:5401980-5401999 Msa0626010:intron 45.0%
CGAGATCATTTGGAAGAAGC+GGG - chr4_3:5402079-5402098 None:intergenic 45.0%
!!! TTCGAGTTTTTTCGGTGGGA+TGG + chr4_3:5402181-5402200 Msa0626010:three_prime_UTR 45.0%
!! AGATTAAAATAAATTTAATA+TGG - chr4_3:5400495-5400514 None:intergenic 5.0%
!!! ATATTAAATTTATTTTAATC+TGG + chr4_3:5400494-5400513 Msa0626010:intron 5.0%
!! GGCTGGTTTGATAGAGCAGT+AGG + chr4_3:5398867-5398886 Msa0626010:five_prime_UTR 50.0%
! AAAAGCGGCGAAGGTGGATT+TGG + chr4_3:5398965-5398984 Msa0626010:CDS 50.0%
! GCGAAGGTGGATTTGGATCA+AGG + chr4_3:5398972-5398991 Msa0626010:CDS 50.0%
!! AATAAACTCAGGGGTTGGCC+TGG + chr4_3:5399442-5399461 Msa0626010:intron 50.0%
TTCAATTGTGCCCTCGCTAG+TGG + chr4_3:5399577-5399596 Msa0626010:intron 50.0%
GAAACTCGGTATCCAGCTCA+AGG - chr4_3:5399634-5399653 None:intergenic 50.0%
TTGAGGCTTTCTGCCAAGCT+AGG - chr4_3:5400170-5400189 None:intergenic 50.0%
GGGTCAGAAAGTAAGCAGAG+AGG + chr4_3:5401711-5401730 Msa0626010:intron 50.0%
!!! GAGTTTTTTCGGTGGGATGG+AGG + chr4_3:5402184-5402203 Msa0626010:three_prime_UTR 50.0%
GCAAAGGTGAAAAGCGGCGA+AGG + chr4_3:5398956-5398975 Msa0626010:CDS 55.0%
AAGGTGAAAAGCGGCGAAGG+TGG + chr4_3:5398959-5398978 Msa0626010:CDS 55.0%
! CTAGAGAGGAGCACACTCCT+AGG - chr4_3:5399484-5399503 None:intergenic 55.0%
! CTAGGAGTGTGCTCCTCTCT+AGG + chr4_3:5399482-5399501 Msa0626010:intron 55.0%
ATTGTGCCCTCGCTAGTGGA+CGG + chr4_3:5399581-5399600 Msa0626010:intron 55.0%
!! AAACTCAGGGGTTGGCCTGG+TGG + chr4_3:5399445-5399464 Msa0626010:intron 60.0%
! TTGGCCTGGTGGTGAAGGCT+TGG + chr4_3:5399456-5399475 Msa0626010:intron 60.0%
! TGGCCTGGTGGTGAAGGCTT+GGG + chr4_3:5399457-5399476 Msa0626010:intron 60.0%
GTGGTGAAGGCTTGGGACCT+AGG + chr4_3:5399464-5399483 Msa0626010:intron 60.0%
ATCCCACCGTCCACTAGCGA+GGG - chr4_3:5399590-5399609 None:intergenic 60.0%
AATCCCACCGTCCACTAGCG+AGG - chr4_3:5399591-5399610 None:intergenic 60.0%
!! AGGGGTTGGCCTGGTGGTGA+AGG + chr4_3:5399451-5399470 Msa0626010:intron 65.0%
GGTCCCAAGCCTTCACCACC+AGG - chr4_3:5399463-5399482 None:intergenic 65.0%
! TGCCCTCGCTAGTGGACGGT+GGG + chr4_3:5399585-5399604 Msa0626010:intron 65.0%
! GTGCCCTCGCTAGTGGACGG+TGG + chr4_3:5399584-5399603 Msa0626010:intron 70.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 5398856 5402432 5398856 ID=Msa0626010;Name=Msa0626010
chr4_3 mRNA 5398856 5402432 5398856 ID=Msa0626010-mRNA-1;Parent=Msa0626010;Name=Msa0626010-mRNA-1;_AED=0.00;_eAED=0.00;_QI=82|1|1|1|1|1|2|339|82
chr4_3 exon 5398856 5399094 5398856 ID=Msa0626010-mRNA-1:exon:1502;Parent=Msa0626010-mRNA-1
chr4_3 exon 5402002 5402432 5402002 ID=Msa0626010-mRNA-1:exon:1503;Parent=Msa0626010-mRNA-1
chr4_3 five_prime_UTR 5398856 5398937 5398856 ID=Msa0626010-mRNA-1:five_prime_utr;Parent=Msa0626010-mRNA-1
chr4_3 CDS 5398938 5399094 5398938 ID=Msa0626010-mRNA-1:cds;Parent=Msa0626010-mRNA-1
chr4_3 CDS 5402002 5402093 5402002 ID=Msa0626010-mRNA-1:cds;Parent=Msa0626010-mRNA-1
chr4_3 three_prime_UTR 5402094 5402432 5402094 ID=Msa0626010-mRNA-1:three_prime_utr;Parent=Msa0626010-mRNA-1
Gene Sequence

>Msa0626010

ATGAGCAACGAAGCAAAAGCAAAGGTGAAAAGCGGCGAAGGTGGATTTGGATCAAGGTTGAATCAAATTCTATATAGCGGTGAGAAGAAGCATGTTTTCGCTGGCTTAGTTCTCATCACTGCCGTTTTTTCTGTACCATGGTTTCTTATGAACAGAGGATCAAAACACCAATCTCATCAAGATTACTTGGAAAAAGCTGATAAAGCAAGGAGCGAAAGACTCTCATCAAGTCCCGCTTCTTCCAAATGA
Protein sequence

>Msa0626010

MSNEAKAKVKSGEGGFGSRLNQILYSGEKKHVFAGLVLITAVFSVPWFLMNRGSKHQSHQDYLEKADKARSERLSSSPASSK*