Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1419700 | sp|Q6NMF0|CLE13_ARATH | 50.000 | 66 | 20 | 2 | 29 | 94 | 55 | 107 | 2.35e-12 | 60.8 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1419700 | A0A396IHQ0 | 85.263 | 95 | 6 | 2 | 1 | 94 | 79 | 166 | 6.85e-35 | 126 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0011510 | Msa1419700 | 0.809546 | 1.793561e-50 | -8.615850e-47 |
Msa0030760 | Msa1419700 | -0.808311 | 3.296716e-50 | -8.615850e-47 |
Msa0032770 | Msa1419700 | 0.808894 | 2.475289e-50 | -8.615850e-47 |
Msa0036560 | Msa1419700 | -0.810419 | 1.163405e-50 | -8.615850e-47 |
Msa0039890 | Msa1419700 | 0.816869 | 4.426783e-52 | -8.615850e-47 |
Msa0060370 | Msa1419700 | 0.813711 | 2.229064e-51 | -8.615850e-47 |
Msa0064990 | Msa1419700 | 0.826264 | 2.984718e-54 | -8.615850e-47 |
Msa0067750 | Msa1419700 | -0.818987 | 1.471341e-52 | -8.615850e-47 |
Msa0074860 | Msa1419700 | -0.808446 | 3.084356e-50 | -8.615850e-47 |
Msa0081700 | Msa1419700 | -0.810667 | 1.028463e-50 | -8.615850e-47 |
Msa0094900 | Msa1419700 | -0.800561 | 1.360655e-48 | -8.615850e-47 |
Msa0099090 | Msa1419700 | -0.814160 | 1.775099e-51 | -8.615850e-47 |
Msa1344930 | Msa1419700 | 0.828240 | 1.003707e-54 | -8.615850e-47 |
Msa1350580 | Msa1419700 | -0.800646 | 1.307100e-48 | -8.615850e-47 |
Msa1356100 | Msa1419700 | -0.801134 | 1.039317e-48 | -8.615850e-47 |
Msa1366480 | Msa1419700 | 0.810368 | 1.193410e-50 | -8.615850e-47 |
Msa1369220 | Msa1419700 | -0.818112 | 2.323345e-52 | -8.615850e-47 |
Msa1371540 | Msa1419700 | -0.822172 | 2.730853e-53 | -8.615850e-47 |
Msa1372470 | Msa1419700 | -0.815304 | 9.901296e-52 | -8.615850e-47 |
Msa1373990 | Msa1419700 | 0.820411 | 6.956844e-53 | -8.615850e-47 |
Msa1375640 | Msa1419700 | 0.832106 | 1.142435e-55 | -8.615850e-47 |
Msa1375980 | Msa1419700 | -0.804226 | 2.390851e-49 | -8.615850e-47 |
Msa1376520 | Msa1419700 | 0.810470 | 1.134679e-50 | -8.615850e-47 |
Msa1377980 | Msa1419700 | -0.811537 | 6.663722e-51 | -8.615850e-47 |
Msa1381300 | Msa1419700 | -0.802210 | 6.251537e-49 | -8.615850e-47 |
Msa1382100 | Msa1419700 | -0.800373 | 1.485529e-48 | -8.615850e-47 |
Msa1384410 | Msa1419700 | -0.810232 | 1.276653e-50 | -8.615850e-47 |
Msa1395380 | Msa1419700 | -0.806141 | 9.501923e-50 | -8.615850e-47 |
Msa1398120 | Msa1419700 | 0.827798 | 1.282137e-54 | -8.615850e-47 |
Msa1407770 | Msa1419700 | -0.800501 | 1.399195e-48 | -8.615850e-47 |
Msa1408280 | Msa1419700 | -0.810608 | 1.059414e-50 | -8.615850e-47 |
Msa1419700 | Msa1429190 | 0.803107 | 4.081514e-49 | -8.615850e-47 |
Msa1419700 | Msa1434850 | -0.811386 | 7.183717e-51 | -8.615850e-47 |
Msa1419700 | Msa1449470 | 0.802395 | 5.725228e-49 | -8.615850e-47 |
Msa1419700 | Msa1453890 | 0.802015 | 6.855957e-49 | -8.615850e-47 |
Msa1419700 | Msa1454300 | -0.803662 | 3.131921e-49 | -8.615850e-47 |
Msa1419700 | Msa1459130 | -0.812252 | 4.655817e-51 | -8.615850e-47 |
Msa1419700 | Msa1459930 | 0.817170 | 3.789061e-52 | -8.615850e-47 |
Msa1419700 | Msa1464140 | 0.838385 | 2.967124e-57 | -8.615850e-47 |
Msa1419700 | Msa1464470 | -0.809300 | 2.025740e-50 | -8.615850e-47 |
Msa1419700 | Msa1466530 | 0.820878 | 5.435416e-53 | -8.615850e-47 |
Msa0616890 | Msa1419700 | -0.812457 | 4.199724e-51 | -8.615850e-47 |
Msa0622800 | Msa1419700 | -0.804652 | 1.949182e-49 | -8.615850e-47 |
Msa0625900 | Msa1419700 | -0.804541 | 2.055842e-49 | -8.615850e-47 |
Msa0632040 | Msa1419700 | -0.817782 | 2.758630e-52 | -8.615850e-47 |
Msa0633630 | Msa1419700 | 0.812306 | 4.530719e-51 | -8.615850e-47 |
Msa0638820 | Msa1419700 | 0.806882 | 6.629481e-50 | -8.615850e-47 |
Msa0651820 | Msa1419700 | 0.811653 | 6.286562e-51 | -8.615850e-47 |
Msa0654500 | Msa1419700 | -0.805967 | 1.033807e-49 | -8.615850e-47 |
Msa0663690 | Msa1419700 | -0.803988 | 2.680295e-49 | -8.615850e-47 |
Msa0672090 | Msa1419700 | 0.814625 | 1.400376e-51 | -8.615850e-47 |
Msa0672950 | Msa1419700 | 0.807241 | 5.563700e-50 | -8.615850e-47 |
Msa0672980 | Msa1419700 | 0.802441 | 5.601887e-49 | -8.615850e-47 |
Msa0697510 | Msa1419700 | 0.807605 | 4.657764e-50 | -8.615850e-47 |
Msa0697520 | Msa1419700 | 0.803152 | 3.995045e-49 | -8.615850e-47 |
Msa0698110 | Msa1419700 | 0.800086 | 1.699635e-48 | -8.615850e-47 |
Msa0699800 | Msa1419700 | 0.812828 | 3.483018e-51 | -8.615850e-47 |
Msa0701430 | Msa1419700 | 0.803077 | 4.140372e-49 | -8.615850e-47 |
Msa0701800 | Msa1419700 | -0.815294 | 9.953716e-52 | -8.615850e-47 |
Msa0705520 | Msa1419700 | 0.809413 | 1.915637e-50 | -8.615850e-47 |
Msa0727230 | Msa1419700 | 0.811116 | 8.223576e-51 | -8.615850e-47 |
Msa0738460 | Msa1419700 | -0.804066 | 2.581925e-49 | -8.615850e-47 |
Msa0742690 | Msa1419700 | -0.821423 | 4.070543e-53 | -8.615850e-47 |
Msa0744550 | Msa1419700 | 0.806591 | 7.634936e-50 | -8.615850e-47 |
Msa0744560 | Msa1419700 | 0.801680 | 8.033296e-49 | -8.615850e-47 |
Msa0751970 | Msa1419700 | 0.801793 | 7.615741e-49 | -8.615850e-47 |
Msa0779830 | Msa1419700 | -0.813730 | 2.207487e-51 | -8.615850e-47 |
Msa0794100 | Msa1419700 | 0.833340 | 5.642675e-56 | -8.615850e-47 |
Msa0795320 | Msa1419700 | 0.813080 | 3.067455e-51 | -8.615850e-47 |
Msa0826360 | Msa1419700 | 0.830112 | 3.526846e-55 | -8.615850e-47 |
Msa0826370 | Msa1419700 | 0.815546 | 8.745267e-52 | -8.615850e-47 |
Msa0827560 | Msa1419700 | -0.817474 | 3.236227e-52 | -8.615850e-47 |
Msa0829770 | Msa1419700 | -0.809173 | 2.156526e-50 | -8.615850e-47 |
Msa0127910 | Msa1419700 | -0.801376 | 9.271121e-49 | -8.615850e-47 |
Msa0134270 | Msa1419700 | 0.805597 | 1.236063e-49 | -8.615850e-47 |
Msa0138340 | Msa1419700 | -0.817570 | 3.078872e-52 | -8.615850e-47 |
Msa0143830 | Msa1419700 | 0.802864 | 4.582099e-49 | -8.615850e-47 |
Msa0143950 | Msa1419700 | 0.800572 | 1.353104e-48 | -8.615850e-47 |
Msa0144000 | Msa1419700 | 0.800015 | 1.757469e-48 | -8.615850e-47 |
Msa0146210 | Msa1419700 | 0.819176 | 1.332608e-52 | -8.615850e-47 |
Msa0147960 | Msa1419700 | -0.816540 | 5.246776e-52 | -8.615850e-47 |
Msa0148000 | Msa1419700 | -0.830756 | 2.454617e-55 | -8.615850e-47 |
Msa0172890 | Msa1419700 | 0.808803 | 2.587651e-50 | -8.615850e-47 |
Msa0180820 | Msa1419700 | 0.805171 | 1.518335e-49 | -8.615850e-47 |
Msa0183960 | Msa1419700 | -0.800040 | 1.736588e-48 | -8.615850e-47 |
Msa0194750 | Msa1419700 | -0.809423 | 1.906686e-50 | -8.615850e-47 |
Msa0210790 | Msa1419700 | 0.802547 | 5.327499e-49 | -8.615850e-47 |
Msa0210850 | Msa1419700 | 0.801452 | 8.945839e-49 | -8.615850e-47 |
Msa0216150 | Msa1419700 | -0.812406 | 4.307333e-51 | -8.615850e-47 |
Msa0224210 | Msa1419700 | 0.819301 | 1.247649e-52 | -8.615850e-47 |
Msa0225070 | Msa1419700 | -0.815238 | 1.024359e-51 | -8.615850e-47 |
Msa0227970 | Msa1419700 | -0.804676 | 1.926912e-49 | -8.615850e-47 |
Msa0229350 | Msa1419700 | -0.804823 | 1.795705e-49 | -8.615850e-47 |
Msa0232660 | Msa1419700 | -0.809632 | 1.719420e-50 | -8.615850e-47 |
Msa0233210 | Msa1419700 | 0.800309 | 1.530964e-48 | -8.615850e-47 |
Msa0236690 | Msa1419700 | -0.810649 | 1.037879e-50 | -8.615850e-47 |
Msa0238140 | Msa1419700 | 0.800696 | 1.276562e-48 | -8.615850e-47 |
Msa1263500 | Msa1419700 | 0.801962 | 7.029242e-49 | -8.615850e-47 |
Msa1290090 | Msa1419700 | -0.801094 | 1.059065e-48 | -8.615850e-47 |
Msa1298480 | Msa1419700 | -0.806343 | 8.616132e-50 | -8.615850e-47 |
Msa1299480 | Msa1419700 | 0.806676 | 7.327439e-50 | -8.615850e-47 |
Msa1313720 | Msa1419700 | 0.818647 | 1.757736e-52 | -8.615850e-47 |
Msa1323260 | Msa1419700 | -0.811172 | 7.997167e-51 | -8.615850e-47 |
Msa1342360 | Msa1419700 | -0.823186 | 1.586209e-53 | -8.615850e-47 |
Msa0368620 | Msa1419700 | 0.821378 | 4.167900e-53 | -8.615850e-47 |
Msa0379890 | Msa1419700 | -0.802245 | 6.148068e-49 | -8.615850e-47 |
Msa0382020 | Msa1419700 | -0.806493 | 8.008935e-50 | -8.615850e-47 |
Msa0389570 | Msa1419700 | -0.802974 | 4.347943e-49 | -8.615850e-47 |
Msa0389710 | Msa1419700 | 0.820353 | 7.175241e-53 | -8.615850e-47 |
Msa0390590 | Msa1419700 | -0.801095 | 1.058422e-48 | -8.615850e-47 |
Msa0390790 | Msa1419700 | 0.823858 | 1.104314e-53 | -8.615850e-47 |
Msa0403740 | Msa1419700 | -0.823555 | 1.300500e-53 | -8.615850e-47 |
Msa0416040 | Msa1419700 | 0.816642 | 4.976496e-52 | -8.615850e-47 |
Msa0421080 | Msa1419700 | 0.811982 | 5.330499e-51 | -8.615850e-47 |
Msa0428300 | Msa1419700 | -0.800079 | 1.704912e-48 | -8.615850e-47 |
Msa0449500 | Msa1419700 | 0.811664 | 6.251199e-51 | -8.615850e-47 |
Msa0456450 | Msa1419700 | -0.823154 | 1.613940e-53 | -8.615850e-47 |
Msa0470440 | Msa1419700 | 0.803048 | 4.198920e-49 | -8.615850e-47 |
Msa0480260 | Msa1419700 | 0.818154 | 2.272425e-52 | -8.615850e-47 |
Msa0480540 | Msa1419700 | 0.801202 | 1.006527e-48 | -8.615850e-47 |
Msa1006170 | Msa1419700 | 0.811582 | 6.515516e-51 | -8.615850e-47 |
Msa1016450 | Msa1419700 | -0.803050 | 4.193850e-49 | -8.615850e-47 |
Msa1018210 | Msa1419700 | -0.804295 | 2.313390e-49 | -8.615850e-47 |
Msa1039150 | Msa1419700 | -0.800214 | 1.600651e-48 | -8.615850e-47 |
Msa1041250 | Msa1419700 | 0.802146 | 6.442368e-49 | -8.615850e-47 |
Msa1057940 | Msa1419700 | -0.813561 | 2.404489e-51 | -8.615850e-47 |
Msa1075090 | Msa1419700 | 0.800028 | 1.746514e-48 | -8.615850e-47 |
Msa1082080 | Msa1419700 | 0.812477 | 4.157358e-51 | -8.615850e-47 |
Msa1084340 | Msa1419700 | -0.800347 | 1.504055e-48 | -8.615850e-47 |
Msa1087210 | Msa1419700 | 0.831273 | 1.832644e-55 | -8.615850e-47 |
Msa1093190 | Msa1419700 | -0.814861 | 1.241489e-51 | -8.615850e-47 |
Msa1104020 | Msa1419700 | -0.811025 | 8.603407e-51 | -8.615850e-47 |
Msa0246140 | Msa1419700 | 0.802785 | 4.757070e-49 | -8.615850e-47 |
Msa0270730 | Msa1419700 | -0.809426 | 1.903651e-50 | -8.615850e-47 |
Msa0304350 | Msa1419700 | -0.807790 | 4.255934e-50 | -8.615850e-47 |
Msa0305910 | Msa1419700 | -0.806426 | 8.272553e-50 | -8.615850e-47 |
Msa0310260 | Msa1419700 | -0.816419 | 5.583260e-52 | -8.615850e-47 |
Msa0324810 | Msa1419700 | 0.803613 | 3.206409e-49 | -8.615850e-47 |
Msa0333770 | Msa1419700 | 0.802011 | 6.866907e-49 | -8.615850e-47 |
Msa0336550 | Msa1419700 | -0.806543 | 7.817132e-50 | -8.615850e-47 |
Msa0340830 | Msa1419700 | -0.804267 | 2.344487e-49 | -8.615850e-47 |
Msa0364030 | Msa1419700 | -0.823865 | 1.100413e-53 | -8.615850e-47 |
Msa1112630 | Msa1419700 | 0.804267 | 2.345092e-49 | -8.615850e-47 |
Msa1121720 | Msa1419700 | -0.800236 | 1.584296e-48 | -8.615850e-47 |
Msa1132880 | Msa1419700 | -0.800137 | 1.659811e-48 | -8.615850e-47 |
Msa1157200 | Msa1419700 | 0.803904 | 2.790132e-49 | -8.615850e-47 |
Msa1162430 | Msa1419700 | 0.809442 | 1.888206e-50 | -8.615850e-47 |
Msa1165670 | Msa1419700 | 0.816134 | 6.467439e-52 | -8.615850e-47 |
Msa1170320 | Msa1419700 | 0.803606 | 3.217368e-49 | -8.615850e-47 |
Msa1174280 | Msa1419700 | 0.827321 | 1.668462e-54 | -8.615850e-47 |
Msa1191530 | Msa1419700 | -0.801709 | 7.921861e-49 | -8.615850e-47 |
Msa1205270 | Msa1419700 | -0.801467 | 8.881957e-49 | -8.615850e-47 |
Msa1209990 | Msa1419700 | -0.806134 | 9.532932e-50 | -8.615850e-47 |
Msa1211610 | Msa1419700 | 0.804017 | 2.643618e-49 | -8.615850e-47 |
Msa1214960 | Msa1419700 | 0.820687 | 6.011880e-53 | -8.615850e-47 |
Msa0497680 | Msa1419700 | 0.814960 | 1.180341e-51 | -8.615850e-47 |
Msa0508160 | Msa1419700 | 0.811609 | 6.427445e-51 | -8.615850e-47 |
Msa0527210 | Msa1419700 | -0.814174 | 1.761767e-51 | -8.615850e-47 |
Msa0537210 | Msa1419700 | 0.837946 | 3.849574e-57 | -8.615850e-47 |
Msa0538050 | Msa1419700 | -0.824084 | 9.777886e-54 | -8.615850e-47 |
Msa0559440 | Msa1419700 | -0.811233 | 7.756248e-51 | -8.615850e-47 |
Msa0559640 | Msa1419700 | -0.806505 | 7.962402e-50 | -8.615850e-47 |
Msa0560280 | Msa1419700 | 0.823929 | 1.062724e-53 | -8.615850e-47 |
Msa0572730 | Msa1419700 | -0.804938 | 1.699004e-49 | -8.615850e-47 |
Msa0580210 | Msa1419700 | 0.800688 | 1.281817e-48 | -8.615850e-47 |
Msa0580890 | Msa1419700 | -0.800035 | 1.740431e-48 | -8.615850e-47 |
Msa0582270 | Msa1419700 | -0.806704 | 7.228917e-50 | -8.615850e-47 |
Msa0583270 | Msa1419700 | -0.802440 | 5.603947e-49 | -8.615850e-47 |
Msa0585720 | Msa1419700 | -0.809539 | 1.799807e-50 | -8.615850e-47 |
Msa0593600 | Msa1419700 | 0.812998 | 3.197178e-51 | -8.615850e-47 |
Msa0594470 | Msa1419700 | 0.807811 | 4.212081e-50 | -8.615850e-47 |
Msa0847140 | Msa1419700 | 0.804498 | 2.098825e-49 | -8.615850e-47 |
Msa0862750 | Msa1419700 | -0.817771 | 2.774387e-52 | -8.615850e-47 |
Msa0865830 | Msa1419700 | 0.818287 | 2.120473e-52 | -8.615850e-47 |
Msa0896920 | Msa1419700 | 0.802845 | 4.623826e-49 | -8.615850e-47 |
Msa0898830 | Msa1419700 | -0.800783 | 1.225405e-48 | -8.615850e-47 |
Msa0902340 | Msa1419700 | 0.807159 | 5.792508e-50 | -8.615850e-47 |
Msa0906100 | Msa1419700 | -0.816969 | 4.203405e-52 | -8.615850e-47 |
Msa0934290 | Msa1419700 | -0.810235 | 1.275019e-50 | -8.615850e-47 |
Msa0937160 | Msa1419700 | -0.814102 | 1.827806e-51 | -8.615850e-47 |
Msa0938150 | Msa1419700 | -0.804980 | 1.664845e-49 | -8.615850e-47 |
Msa0947420 | Msa1419700 | 0.831956 | 1.244037e-55 | -8.615850e-47 |
Msa0967900 | Msa1419700 | -0.807260 | 5.512692e-50 | -8.615850e-47 |
Msa0971780 | Msa1419700 | -0.808178 | 3.519548e-50 | -8.615850e-47 |
Msa0975950 | Msa1419700 | 0.823147 | 1.619963e-53 | -8.615850e-47 |
Msa0976400 | Msa1419700 | 0.801975 | 6.986803e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1419700 | MtrunA17_Chr4g0062601 | 85.263 | 95 | 6 | 2 | 1 | 94 | 79 | 166 | 1.32e-38 | 126 |
Msa1419700 | MtrunA17_Chr8g0372741 | 68.367 | 98 | 26 | 3 | 1 | 94 | 82 | 178 | 1.25e-34 | 116 |
Msa1419700 | MtrunA17_Chr1g0198831 | 46.269 | 67 | 21 | 2 | 29 | 94 | 52 | 104 | 1.77e-11 | 55.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1419700 | AT1G73965.1 | 50.000 | 66 | 20 | 2 | 29 | 94 | 55 | 107 | 2.39e-13 | 60.8 |
Msa1419700 | AT1G68795.1 | 51.429 | 70 | 16 | 3 | 28 | 94 | 64 | 118 | 9.26e-13 | 59.7 |
Find 31 sgRNAs with CRISPR-Local
Find 30 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TACTAGCAACACCAAGTTTC+AGG | 0.222084 | tig0024723:+11962 | Msa1419700:CDS |
CATTAATGGTGCAATGGATT+TGG | 0.262090 | tig0024723:-12176 | None:intergenic |
AGTTTCAGGTTTATCAAAAT+AGG | 0.287858 | tig0024723:+11976 | Msa1419700:CDS |
ACTTCACTCCATTTCTTAAT+CGG | 0.308385 | tig0024723:+12021 | Msa1419700:CDS |
ACTGAGATCGATCCGCGTTA+TGG | 0.417933 | tig0024723:+12125 | Msa1419700:CDS |
GATACTCTTTCATATGTGCT+TGG | 0.418515 | tig0024723:+11899 | None:intergenic |
AATAGGAAAATCTTAGCAAC+CGG | 0.463874 | tig0024723:+11993 | Msa1419700:CDS |
GATAAACGCCTTGTTCCATC+TGG | 0.473410 | tig0024723:+12152 | Msa1419700:CDS |
AAATCCAATATTAGTACTAG+TGG | 0.494292 | tig0024723:+11927 | Msa1419700:CDS |
TCAGTTTCCTTCGGCTCATG+AGG | 0.494458 | tig0024723:-12107 | None:intergenic |
TGGTGGTGCCGATTAAGAAA+TGG | 0.504177 | tig0024723:-12029 | None:intergenic |
AAATGGAGTGAAGTCAAATC+CGG | 0.507048 | tig0024723:-12012 | None:intergenic |
CCGGCATGTGACTCCGGTGG+TGG | 0.514190 | tig0024723:-12076 | None:intergenic |
GAGTCACCGGCATGTGACTC+CGG | 0.517907 | tig0024723:-12082 | None:intergenic |
GGCTCATGAGGGTGAGTCAC+CGG | 0.520168 | tig0024723:-12095 | None:intergenic |
ACCACGGTCATCGTCATCAT+CGG | 0.529578 | tig0024723:+12048 | Msa1419700:CDS |
GGATCGATCTCAGTTTCCTT+CGG | 0.540255 | tig0024723:-12116 | None:intergenic |
CCACGGTCATCGTCATCATC+GGG | 0.543735 | tig0024723:+12049 | Msa1419700:CDS |
TGCAATGGATTTGGACCAGA+TGG | 0.557410 | tig0024723:-12167 | None:intergenic |
GAACCTCATTAATGGTGCAA+TGG | 0.574590 | tig0024723:-12182 | None:intergenic |
CCACCACCGGAGTCACATGC+CGG | 0.579118 | tig0024723:+12076 | Msa1419700:CDS |
AAACTTGGTGTTGCTAGTAA+TGG | 0.582271 | tig0024723:-11958 | None:intergenic |
CAGTTTCCTTCGGCTCATGA+GGG | 0.590230 | tig0024723:-12106 | None:intergenic |
GACTCACCCTCATGAGCCGA+AGG | 0.604155 | tig0024723:+12100 | Msa1419700:CDS |
GATTTGGACCAGATGGAACA+AGG | 0.607957 | tig0024723:-12160 | None:intergenic |
ATCATCGGGATCACCACCAC+CGG | 0.629549 | tig0024723:+12063 | Msa1419700:CDS |
TCACCGGCATGTGACTCCGG+TGG | 0.690195 | tig0024723:-12079 | None:intergenic |
TTTCTTAATCGGCACCACCA+CGG | 0.698743 | tig0024723:+12032 | Msa1419700:CDS |
CGTTTATCAACACCATAACG+CGG | 0.733230 | tig0024723:-12137 | None:intergenic |
CCCGATGATGACGATGACCG+TGG | 0.746981 | tig0024723:-12049 | None:intergenic |
GATGATGACGATGACCGTGG+TGG | 0.778203 | tig0024723:-12046 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
! | AAATCCAATATTAGTACTAG+TGG | + | tig0024723:11927-11946 | Msa1419700:CDS | 25.0% |
!! | TTTTCCACTAGTACTAATAT+TGG | - | tig0024723:11934-11953 | None:intergenic | 25.0% |
!!! | ATTTTGATAAACCTGAAACT+TGG | - | tig0024723:11976-11995 | None:intergenic | 25.0% |
!!! | AGTTTCAGGTTTATCAAAAT+AGG | + | tig0024723:11976-11995 | Msa1419700:CDS | 25.0% |
AATAGGAAAATCTTAGCAAC+CGG | + | tig0024723:11993-12012 | Msa1419700:CDS | 30.0% | |
ACTTCACTCCATTTCTTAAT+CGG | + | tig0024723:12021-12040 | Msa1419700:CDS | 30.0% | |
!! | AAACTTGGTGTTGCTAGTAA+TGG | - | tig0024723:11961-11980 | None:intergenic | 35.0% |
AAATGGAGTGAAGTCAAATC+CGG | - | tig0024723:12015-12034 | None:intergenic | 35.0% | |
TACTAGCAACACCAAGTTTC+AGG | + | tig0024723:11962-11981 | Msa1419700:CDS | 40.0% | |
CGTTTATCAACACCATAACG+CGG | - | tig0024723:12140-12159 | None:intergenic | 40.0% | |
!! | TGGTGGTGCCGATTAAGAAA+TGG | - | tig0024723:12032-12051 | None:intergenic | 45.0% |
TTTCTTAATCGGCACCACCA+CGG | + | tig0024723:12032-12051 | Msa1419700:CDS | 45.0% | |
GGATCGATCTCAGTTTCCTT+CGG | - | tig0024723:12119-12138 | None:intergenic | 45.0% | |
! | GATAAACGCCTTGTTCCATC+TGG | + | tig0024723:12152-12171 | Msa1419700:CDS | 45.0% |
GATTTGGACCAGATGGAACA+AGG | - | tig0024723:12163-12182 | None:intergenic | 45.0% | |
! | TGCAATGGATTTGGACCAGA+TGG | - | tig0024723:12170-12189 | None:intergenic | 45.0% |
ACCACGGTCATCGTCATCAT+CGG | + | tig0024723:12048-12067 | Msa1419700:CDS | 50.0% | |
CAGTTTCCTTCGGCTCATGA+GGG | - | tig0024723:12109-12128 | None:intergenic | 50.0% | |
TCAGTTTCCTTCGGCTCATG+AGG | - | tig0024723:12110-12129 | None:intergenic | 50.0% | |
ACTGAGATCGATCCGCGTTA+TGG | + | tig0024723:12125-12144 | Msa1419700:CDS | 50.0% | |
! | GATGATGACGATGACCGTGG+TGG | - | tig0024723:12049-12068 | None:intergenic | 55.0% |
CCACGGTCATCGTCATCATC+GGG | + | tig0024723:12049-12068 | Msa1419700:CDS | 55.0% | |
ATCATCGGGATCACCACCAC+CGG | + | tig0024723:12063-12082 | Msa1419700:CDS | 55.0% | |
! | CCCGATGATGACGATGACCG+TGG | - | tig0024723:12052-12071 | None:intergenic | 60.0% |
GAGTCACCGGCATGTGACTC+CGG | - | tig0024723:12085-12104 | None:intergenic | 60.0% | |
GGCTCATGAGGGTGAGTCAC+CGG | - | tig0024723:12098-12117 | None:intergenic | 60.0% | |
GACTCACCCTCATGAGCCGA+AGG | + | tig0024723:12100-12119 | Msa1419700:CDS | 60.0% | |
CCACCACCGGAGTCACATGC+CGG | + | tig0024723:12076-12095 | Msa1419700:CDS | 65.0% | |
TCACCGGCATGTGACTCCGG+TGG | - | tig0024723:12082-12101 | None:intergenic | 65.0% | |
CCGGCATGTGACTCCGGTGG+TGG | - | tig0024723:12079-12098 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
tig0024723 | gene | 11912 | 12196 | 11912 | ID=Msa1419700;Name=Msa1419700 |
tig0024723 | mRNA | 11912 | 12196 | 11912 | ID=Msa1419700-mRNA-1;Parent=Msa1419700;Name=Msa1419700-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|-1|0|1|-1|1|1|0|94 |
tig0024723 | exon | 11912 | 12196 | 11912 | ID=Msa1419700-mRNA-1:exon:1048;Parent=Msa1419700-mRNA-1 |
tig0024723 | CDS | 11912 | 12196 | 11912 | ID=Msa1419700-mRNA-1:cds;Parent=Msa1419700-mRNA-1 |
Gene Sequence |
Protein sequence |