Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003640 | Msa0208350 | 0.807778 | 4.280887e-50 | -8.615850e-47 |
| Msa0011960 | Msa0208350 | 0.835222 | 1.902999e-56 | -8.615850e-47 |
| Msa0013050 | Msa0208350 | -0.803892 | 2.805945e-49 | -8.615850e-47 |
| Msa0023000 | Msa0208350 | 0.815728 | 7.968655e-52 | -8.615850e-47 |
| Msa0027230 | Msa0208350 | 0.806313 | 8.742032e-50 | -8.615850e-47 |
| Msa0027260 | Msa0208350 | 0.815270 | 1.007469e-51 | -8.615850e-47 |
| Msa0032580 | Msa0208350 | 0.831933 | 1.260551e-55 | -8.615850e-47 |
| Msa0050390 | Msa0208350 | 0.802982 | 4.331530e-49 | -8.615850e-47 |
| Msa0058300 | Msa0208350 | 0.843735 | 1.167194e-58 | -8.615850e-47 |
| Msa0059110 | Msa0208350 | 0.805869 | 1.083844e-49 | -8.615850e-47 |
| Msa0061080 | Msa0208350 | 0.805813 | 1.113642e-49 | -8.615850e-47 |
| Msa0075500 | Msa0208350 | 0.804730 | 1.877027e-49 | -8.615850e-47 |
| Msa0078900 | Msa0208350 | 0.803480 | 3.416671e-49 | -8.615850e-47 |
| Msa0083310 | Msa0208350 | 0.813257 | 2.804350e-51 | -8.615850e-47 |
| Msa0091570 | Msa0208350 | 0.810856 | 9.361477e-51 | -8.615850e-47 |
| Msa0100740 | Msa0208350 | 0.815998 | 6.934285e-52 | -8.615850e-47 |
| Msa0105620 | Msa0208350 | 0.826423 | 2.734787e-54 | -8.615850e-47 |
| Msa0112770 | Msa0208350 | 0.801556 | 8.515913e-49 | -8.615850e-47 |
| Msa0115270 | Msa0208350 | 0.829381 | 5.315344e-55 | -8.615850e-47 |
| Msa0115390 | Msa0208350 | 0.821096 | 4.841911e-53 | -8.615850e-47 |
| Msa0128860 | Msa0208350 | 0.804151 | 2.479392e-49 | -8.615850e-47 |
| Msa0135380 | Msa0208350 | 0.806087 | 9.751900e-50 | -8.615850e-47 |
| Msa0138630 | Msa0208350 | 0.803011 | 4.272140e-49 | -8.615850e-47 |
| Msa0142980 | Msa0208350 | 0.807366 | 5.235317e-50 | -8.615850e-47 |
| Msa0145730 | Msa0208350 | 0.832555 | 8.840739e-56 | -8.615850e-47 |
| Msa0150820 | Msa0208350 | 0.815089 | 1.105295e-51 | -8.615850e-47 |
| Msa0160550 | Msa0208350 | 0.837766 | 4.282527e-57 | -8.615850e-47 |
| Msa0168230 | Msa0208350 | 0.800243 | 1.579143e-48 | -8.615850e-47 |
| Msa0171540 | Msa0208350 | 0.815263 | 1.011185e-51 | -8.615850e-47 |
| Msa0172970 | Msa0208350 | 0.835595 | 1.531254e-56 | -8.615850e-47 |
| Msa0174730 | Msa0208350 | 0.803916 | 2.773828e-49 | -8.615850e-47 |
| Msa0187120 | Msa0208350 | 0.835039 | 2.116117e-56 | -8.615850e-47 |
| Msa0189520 | Msa0208350 | 0.803233 | 3.843822e-49 | -8.615850e-47 |
| Msa0193120 | Msa0208350 | 0.800104 | 1.685542e-48 | -8.615850e-47 |
| Msa0194480 | Msa0208350 | 0.822867 | 1.882906e-53 | -8.615850e-47 |
| Msa0199880 | Msa0208350 | 0.801111 | 1.050452e-48 | -8.615850e-47 |
| Msa0208220 | Msa0208350 | 0.966342 | 8.573269e-126 | -8.615850e-47 |
| Msa0208270 | Msa0208350 | 0.859331 | 4.453503e-63 | -8.615850e-47 |
| Msa0208340 | Msa0208350 | 0.825384 | 4.826802e-54 | -8.615850e-47 |
| Msa0208350 | Msa0212930 | 0.807098 | 5.966591e-50 | -8.615850e-47 |
| Msa0208350 | Msa0226460 | 0.815646 | 8.308359e-52 | -8.615850e-47 |
| Msa0208350 | Msa0226890 | 0.806175 | 9.344070e-50 | -8.615850e-47 |
| Msa0208350 | Msa0241470 | 0.801571 | 8.458120e-49 | -8.615850e-47 |
| Msa0208350 | Msa0241800 | 0.827300 | 1.688642e-54 | -8.615850e-47 |
| Msa0208350 | Msa0253200 | 0.815637 | 8.346076e-52 | -8.615850e-47 |
| Msa0208350 | Msa0262310 | 0.809553 | 1.787351e-50 | -8.615850e-47 |
| Msa0208350 | Msa0262340 | 0.808409 | 3.141522e-50 | -8.615850e-47 |
| Msa0208350 | Msa0265520 | 0.801299 | 9.614718e-49 | -8.615850e-47 |
| Msa0208350 | Msa0271360 | 0.808865 | 2.510058e-50 | -8.615850e-47 |
| Msa0208350 | Msa0271530 | 0.812083 | 5.068362e-51 | -8.615850e-47 |
| Msa0208350 | Msa0292030 | 0.816578 | 5.145491e-52 | -8.615850e-47 |
| Msa0208350 | Msa0294560 | -0.805825 | 1.107285e-49 | -8.615850e-47 |
| Msa0208350 | Msa0295540 | 0.803648 | 3.152914e-49 | -8.615850e-47 |
| Msa0208350 | Msa0298700 | 0.819369 | 1.204009e-52 | -8.615850e-47 |
| Msa0208350 | Msa0306710 | 0.808643 | 2.800623e-50 | -8.615850e-47 |
| Msa0208350 | Msa0321310 | 0.800494 | 1.404024e-48 | -8.615850e-47 |
| Msa0208350 | Msa0330310 | 0.816006 | 6.906525e-52 | -8.615850e-47 |
| Msa0208350 | Msa0336320 | 0.806055 | 9.904027e-50 | -8.615850e-47 |
| Msa0208350 | Msa0337240 | 0.801346 | 9.403835e-49 | -8.615850e-47 |
| Msa0208350 | Msa0337620 | 0.821591 | 3.722535e-53 | -8.615850e-47 |
| Msa0208350 | Msa0340380 | 0.807245 | 5.555029e-50 | -8.615850e-47 |
| Msa0208350 | Msa0369220 | 0.819974 | 8.763518e-53 | -8.615850e-47 |
| Msa0208350 | Msa0372340 | 0.831841 | 1.327685e-55 | -8.615850e-47 |
| Msa0208350 | Msa0376300 | 0.807647 | 4.564116e-50 | -8.615850e-47 |
| Msa0208350 | Msa0383500 | 0.807830 | 4.172074e-50 | -8.615850e-47 |
| Msa0208350 | Msa0385580 | 0.819655 | 1.035991e-52 | -8.615850e-47 |
| Msa0208350 | Msa0387750 | 0.822514 | 2.274371e-53 | -8.615850e-47 |
| Msa0208350 | Msa0388700 | 0.810320 | 1.222456e-50 | -8.615850e-47 |
| Msa0208350 | Msa0398950 | 0.818501 | 1.896736e-52 | -8.615850e-47 |
| Msa0208350 | Msa0402790 | 0.829911 | 3.949175e-55 | -8.615850e-47 |
| Msa0208350 | Msa0420560 | 0.807758 | 4.322622e-50 | -8.615850e-47 |
| Msa0208350 | Msa0446580 | 0.803659 | 3.137576e-49 | -8.615850e-47 |
| Msa0208350 | Msa0458060 | 0.806565 | 7.732005e-50 | -8.615850e-47 |
| Msa0208350 | Msa0481530 | 0.811060 | 8.455201e-51 | -8.615850e-47 |
| Msa0208350 | Msa0493410 | 0.808524 | 2.968184e-50 | -8.615850e-47 |
| Msa0208350 | Msa0508590 | 0.808899 | 2.469067e-50 | -8.615850e-47 |
| Msa0208350 | Msa0508870 | 0.809923 | 1.488514e-50 | -8.615850e-47 |
| Msa0208350 | Msa0510840 | 0.803925 | 2.762630e-49 | -8.615850e-47 |
| Msa0208350 | Msa0512750 | 0.802528 | 5.375916e-49 | -8.615850e-47 |
| Msa0208350 | Msa0529040 | 0.800391 | 1.473666e-48 | -8.615850e-47 |
| Msa0208350 | Msa0529890 | 0.802102 | 6.578768e-49 | -8.615850e-47 |
| Msa0208350 | Msa0530260 | 0.803912 | 2.779967e-49 | -8.615850e-47 |
| Msa0208350 | Msa0534900 | 0.800363 | 1.492695e-48 | -8.615850e-47 |
| Msa0208350 | Msa0541360 | 0.817976 | 2.493143e-52 | -8.615850e-47 |
| Msa0208350 | Msa0545080 | 0.828838 | 7.196070e-55 | -8.615850e-47 |
| Msa0208350 | Msa0555450 | 0.811229 | 7.770833e-51 | -8.615850e-47 |
| Msa0208350 | Msa0556060 | 0.825641 | 4.195382e-54 | -8.615850e-47 |
| Msa0208350 | Msa0585560 | 0.809267 | 2.059230e-50 | -8.615850e-47 |
| Msa0208350 | Msa0609410 | -0.800600 | 1.335405e-48 | -8.615850e-47 |
| Msa0208350 | Msa0610430 | 0.828307 | 9.667575e-55 | -8.615850e-47 |
| Msa0208350 | Msa0615490 | 0.806818 | 6.837077e-50 | -8.615850e-47 |
| Msa0208350 | Msa0616240 | 0.809201 | 2.127080e-50 | -8.615850e-47 |
| Msa0208350 | Msa0625720 | 0.803174 | 3.953114e-49 | -8.615850e-47 |
| Msa0208350 | Msa0635380 | 0.800699 | 1.274833e-48 | -8.615850e-47 |
| Msa0208350 | Msa0643560 | 0.810658 | 1.033158e-50 | -8.615850e-47 |
| Msa0208350 | Msa0663390 | 0.812063 | 5.118961e-51 | -8.615850e-47 |
| Msa0208350 | Msa0675410 | 0.805253 | 1.459349e-49 | -8.615850e-47 |
| Msa0208350 | Msa0683730 | 0.800623 | 1.321614e-48 | -8.615850e-47 |
| Msa0208350 | Msa0688960 | 0.810473 | 1.132798e-50 | -8.615850e-47 |
| Msa0208350 | Msa0692830 | 0.812104 | 5.015093e-51 | -8.615850e-47 |
| Msa0208350 | Msa0692950 | 0.809699 | 1.663032e-50 | -8.615850e-47 |
| Msa0208350 | Msa0698540 | 0.821135 | 4.742719e-53 | -8.615850e-47 |
| Msa0208350 | Msa0699570 | 0.810986 | 8.773739e-51 | -8.615850e-47 |
| Msa0208350 | Msa0716840 | 0.818583 | 1.816775e-52 | -8.615850e-47 |
| Msa0208350 | Msa0743720 | 0.812250 | 4.659663e-51 | -8.615850e-47 |
| Msa0208350 | Msa0745790 | 0.803940 | 2.742048e-49 | -8.615850e-47 |
| Msa0208350 | Msa0763020 | 0.800520 | 1.386542e-48 | -8.615850e-47 |
| Msa0208350 | Msa0763070 | 0.800944 | 1.136452e-48 | -8.615850e-47 |
| Msa0208350 | Msa0784860 | 0.826351 | 2.845373e-54 | -8.615850e-47 |
| Msa0208350 | Msa0786270 | 0.808884 | 2.487325e-50 | -8.615850e-47 |
| Msa0208350 | Msa0793800 | 0.825869 | 3.704073e-54 | -8.615850e-47 |
| Msa0208350 | Msa0808080 | 0.806442 | 8.210035e-50 | -8.615850e-47 |
| Msa0208350 | Msa0808270 | 0.805098 | 1.572731e-49 | -8.615850e-47 |
| Msa0208350 | Msa0812570 | 0.813656 | 2.292126e-51 | -8.615850e-47 |
| Msa0208350 | Msa0813720 | 0.810411 | 1.168170e-50 | -8.615850e-47 |
| Msa0208350 | Msa0824680 | 0.825816 | 3.814248e-54 | -8.615850e-47 |
| Msa0208350 | Msa0831530 | 0.815862 | 7.437479e-52 | -8.615850e-47 |
| Msa0208350 | Msa0849030 | 0.809731 | 1.637083e-50 | -8.615850e-47 |
| Msa0208350 | Msa0863870 | 0.828849 | 7.151424e-55 | -8.615850e-47 |
| Msa0208350 | Msa0866550 | 0.809668 | 1.688773e-50 | -8.615850e-47 |
| Msa0208350 | Msa0926850 | 0.814458 | 1.524986e-51 | -8.615850e-47 |
| Msa0208350 | Msa0936300 | 0.801048 | 1.081814e-48 | -8.615850e-47 |
| Msa0208350 | Msa0938480 | 0.811285 | 7.556743e-51 | -8.615850e-47 |
| Msa0208350 | Msa0947660 | 0.809449 | 1.882205e-50 | -8.615850e-47 |
| Msa0208350 | Msa0949590 | 0.815461 | 9.137167e-52 | -8.615850e-47 |
| Msa0208350 | Msa0969810 | 0.805234 | 1.472981e-49 | -8.615850e-47 |
| Msa0208350 | Msa0999430 | 0.807972 | 3.893085e-50 | -8.615850e-47 |
| Msa0208350 | Msa0999970 | 0.811797 | 5.850194e-51 | -8.615850e-47 |
| Msa0208350 | Msa1003620 | 0.825404 | 4.774792e-54 | -8.615850e-47 |
| Msa0208350 | Msa1007830 | 0.800825 | 1.201660e-48 | -8.615850e-47 |
| Msa0208350 | Msa1009820 | 0.828261 | 9.920874e-55 | -8.615850e-47 |
| Msa0208350 | Msa1012830 | 0.826514 | 2.601424e-54 | -8.615850e-47 |
| Msa0208350 | Msa1037420 | 0.823433 | 1.388853e-53 | -8.615850e-47 |
| Msa0208350 | Msa1039140 | 0.831374 | 1.730865e-55 | -8.615850e-47 |
| Msa0208350 | Msa1046460 | 0.814846 | 1.251359e-51 | -8.615850e-47 |
| Msa0208350 | Msa1048160 | 0.802162 | 6.394978e-49 | -8.615850e-47 |
| Msa0208350 | Msa1051200 | 0.845835 | 3.168998e-59 | -8.615850e-47 |
| Msa0208350 | Msa1080290 | 0.804930 | 1.705239e-49 | -8.615850e-47 |
| Msa0208350 | Msa1081930 | 0.800561 | 1.360090e-48 | -8.615850e-47 |
| Msa0208350 | Msa1082500 | 0.803515 | 3.360232e-49 | -8.615850e-47 |
| Msa0208350 | Msa1089020 | 0.807332 | 5.323725e-50 | -8.615850e-47 |
| Msa0208350 | Msa1091940 | 0.815948 | 7.115627e-52 | -8.615850e-47 |
| Msa0208350 | Msa1104140 | 0.801339 | 9.433473e-49 | -8.615850e-47 |
| Msa0208350 | Msa1104210 | 0.808157 | 3.555689e-50 | -8.615850e-47 |
| Msa0208350 | Msa1106700 | 0.831565 | 1.552992e-55 | -8.615850e-47 |
| Msa0208350 | Msa1123810 | 0.800304 | 1.534701e-48 | -8.615850e-47 |
| Msa0208350 | Msa1136540 | 0.852202 | 5.387664e-61 | -8.615850e-47 |
| Msa0208350 | Msa1137570 | 0.805523 | 1.281450e-49 | -8.615850e-47 |
| Msa0208350 | Msa1137700 | 0.823977 | 1.035626e-53 | -8.615850e-47 |
| Msa0208350 | Msa1169550 | 0.807261 | 5.509750e-50 | -8.615850e-47 |
| Msa0208350 | Msa1186950 | -0.801495 | 8.766664e-49 | -8.615850e-47 |
| Msa0208350 | Msa1190930 | 0.813354 | 2.670781e-51 | -8.615850e-47 |
| Msa0208350 | Msa1208880 | 0.816402 | 5.634984e-52 | -8.615850e-47 |
| Msa0208350 | Msa1224810 | 0.806587 | 7.651795e-50 | -8.615850e-47 |
| Msa0208350 | Msa1245930 | 0.801793 | 7.613978e-49 | -8.615850e-47 |
| Msa0208350 | Msa1253020 | 0.803420 | 3.515213e-49 | -8.615850e-47 |
| Msa0208350 | Msa1253800 | 0.807461 | 4.998411e-50 | -8.615850e-47 |
| Msa0208350 | Msa1254730 | 0.808642 | 2.801495e-50 | -8.615850e-47 |
| Msa0208350 | Msa1259060 | 0.803802 | 2.929007e-49 | -8.615850e-47 |
| Msa0208350 | Msa1275360 | 0.822269 | 2.592401e-53 | -8.615850e-47 |
| Msa0208350 | Msa1286800 | 0.800969 | 1.122991e-48 | -8.615850e-47 |
| Msa0208350 | Msa1306430 | 0.801199 | 1.007895e-48 | -8.615850e-47 |
| Msa0208350 | Msa1306860 | 0.813549 | 2.420161e-51 | -8.615850e-47 |
| Msa0208350 | Msa1332590 | 0.802023 | 6.828948e-49 | -8.615850e-47 |
| Msa0208350 | Msa1335250 | 0.805824 | 1.107633e-49 | -8.615850e-47 |
| Msa0208350 | Msa1340470 | 0.814927 | 1.200381e-51 | -8.615850e-47 |
| Msa0208350 | Msa1348490 | 0.811710 | 6.110368e-51 | -8.615850e-47 |
| Msa0208350 | Msa1359040 | 0.810117 | 1.351984e-50 | -8.615850e-47 |
| Msa0208350 | Msa1379760 | 0.804335 | 2.269589e-49 | -8.615850e-47 |
| Msa0208350 | Msa1382560 | 0.804848 | 1.774060e-49 | -8.615850e-47 |
| Msa0208350 | Msa1385100 | 0.811092 | 8.320732e-51 | -8.615850e-47 |
| Msa0208350 | Msa1385770 | 0.807612 | 4.643157e-50 | -8.615850e-47 |
| Msa0208350 | Msa1400580 | 0.813042 | 3.126591e-51 | -8.615850e-47 |
| Msa0208350 | Msa1409240 | 0.806872 | 6.661918e-50 | -8.615850e-47 |
| Msa0208350 | Msa1410100 | 0.804316 | 2.289955e-49 | -8.615850e-47 |
| Msa0208350 | Msa1416150 | 0.802774 | 4.781635e-49 | -8.615850e-47 |
| Msa0208350 | Msa1419870 | 0.803472 | 3.430193e-49 | -8.615850e-47 |
| Msa0208350 | Msa1434140 | 0.807466 | 4.985725e-50 | -8.615850e-47 |
| Msa0208350 | Msa1457920 | 0.802723 | 4.900747e-49 | -8.615850e-47 |
| Msa0208350 | Msa1465960 | 0.811276 | 7.591806e-51 | -8.615850e-47 |
| Msa0208350 | Msa1466540 | 0.804313 | 2.293256e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 40 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTAGTGATGCTAATGTTT+GGG | 0.296908 | 2_1:-43034639 | Msa0208340:CDS |
| CAAGAGATGAATGGTACTTA+TGG | 0.328250 | 2_1:-43034770 | Msa0208340:intron |
| GAGGTTTATCGAGGAGAAAA+TGG | 0.338158 | 2_1:-43034672 | Msa0208340:CDS |
| CAGCTAGTGATGCTAATGTT+TGG | 0.368928 | 2_1:-43034640 | Msa0208340:CDS |
| CAGAGTCAGGAGTATGATTT+CGG | 0.383123 | 2_1:-43034465 | Msa0208340:CDS |
| TTTATAAGAATATTAATGTT+GGG | 0.418912 | 2_1:-43034592 | Msa0208340:CDS |
| ATGCAGAGGCAAACAGAGTC+AGG | 0.420988 | 2_1:-43034478 | Msa0208340:CDS |
| CTGCACATTTCCTGTGCTTG+TGG | 0.425694 | 2_1:+43034356 | Msa0208350:CDS |
| GAAGTTGAAGAATTTCTTGC+TGG | 0.425907 | 2_1:-43034392 | Msa0208340:CDS |
| ATTTATAAGAATATTAATGT+TGG | 0.426369 | 2_1:-43034593 | Msa0208340:CDS |
| GTGGATCTTCTGTCTAGGTC+TGG | 0.460203 | 2_1:-43034713 | Msa0208340:CDS |
| AGGAGTATGATTTCGGAAGC+AGG | 0.476230 | 2_1:-43034458 | Msa0208340:CDS |
| TATAACATATATAGAGAAGC+TGG | 0.482328 | 2_1:-43034506 | Msa0208340:intron |
| TGGTTATTTCAAGAGATGAA+TGG | 0.487574 | 2_1:-43034779 | Msa0208340:intron |
| TCTGTCTAGGTCTGGAATGG+TGG | 0.516971 | 2_1:-43034705 | Msa0208340:CDS |
| CATATATAGAGAAGCTGGGT+GGG | 0.523154 | 2_1:-43034501 | Msa0208340:intron |
| AGGTTTATCGAGGAGAAAAT+GGG | 0.529645 | 2_1:-43034671 | Msa0208340:CDS |
| TTTCTCCTCGATAAACCTCT+CGG | 0.534801 | 2_1:+43034676 | Msa0208350:CDS |
| CACGCGTAATGCTCCGCACA+TGG | 0.543416 | 2_1:+43034740 | Msa0208350:CDS |
| GTCTAGGTCTGGAATGGTGG+AGG | 0.550083 | 2_1:-43034702 | Msa0208340:CDS |
| TCTTCTGTCTAGGTCTGGAA+TGG | 0.551167 | 2_1:-43034708 | Msa0208340:CDS |
| CACAAGCACAGGAAATGTGC+AGG | 0.552494 | 2_1:-43034355 | Msa0208340:CDS |
| GTGTTGTGGATCTTCTGTCT+AGG | 0.553175 | 2_1:-43034718 | Msa0208340:CDS |
| TCAATCTCATCCACAAGCAC+AGG | 0.569633 | 2_1:-43034366 | Msa0208340:CDS |
| AGAAGCTGGGTGGGATGCAG+AGG | 0.572547 | 2_1:-43034492 | Msa0208340:intron |
| GCAGGGATGAAGAAGAAACC+TGG | 0.586194 | 2_1:-43034440 | Msa0208340:CDS |
| TTTATCGAGGAGAAAATGGG+TGG | 0.586896 | 2_1:-43034668 | Msa0208340:CDS |
| TTAATGTTGGGAATAGAGTG+TGG | 0.596474 | 2_1:-43034580 | Msa0208340:CDS |
| ACCTCGATTATACTGCATCC+AGG | 0.612701 | 2_1:+43034422 | Msa0208350:CDS |
| GATATGGGCGTAGCTGATTG+TGG | 0.616311 | 2_1:-43034545 | Msa0208340:intron |
| GGAGTATGATTTCGGAAGCA+GGG | 0.617438 | 2_1:-43034457 | Msa0208340:CDS |
| ATAACATATATAGAGAAGCT+GGG | 0.623189 | 2_1:-43034505 | Msa0208340:intron |
| GGATGCAGTATAATCGAGGT+AGG | 0.626649 | 2_1:-43034419 | Msa0208340:CDS |
| GGAAGCCGAGAGGTTTATCG+AGG | 0.636017 | 2_1:-43034681 | Msa0208340:CDS |
| GGAGCATTACGCGTGTGTTG+TGG | 0.641024 | 2_1:-43034732 | Msa0208340:CDS |
| GCTAGTGATGCTAATGTTTG+GGG | 0.655428 | 2_1:-43034638 | Msa0208340:CDS |
| ACCTGGATGCAGTATAATCG+AGG | 0.656446 | 2_1:-43034423 | Msa0208340:CDS |
| ACATATATAGAGAAGCTGGG+TGG | 0.667110 | 2_1:-43034502 | Msa0208340:intron |
| TTATGGAGTTGAGCCATGTG+CGG | 0.684348 | 2_1:-43034753 | Msa0208340:CDS |
| GAATGGTGGAGGAAGCCGAG+AGG | 0.732280 | 2_1:-43034691 | Msa0208340:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATAAGAATATTAATGTT+GGG | - | chr2_1:43034595-43034614 | Msa0208340:CDS | 10.0% |
| !! | ATTTATAAGAATATTAATGT+TGG | - | chr2_1:43034596-43034615 | Msa0208340:CDS | 10.0% |
| !! | TTTATAAGAATATTAATGTT+GGG | - | chr2_1:43034595-43034614 | Msa0208340:CDS | 10.0% |
| !! | ATTTATAAGAATATTAATGT+TGG | - | chr2_1:43034596-43034615 | Msa0208340:CDS | 10.0% |
| !!! | ATTTCTTTTATGAATACTAT+AGG | + | chr2_1:43034225-43034244 | Msa0208350:intron | 15.0% |
| !!! | ATTTCTTTTATGAATACTAT+AGG | + | chr2_1:43034225-43034244 | Msa0208350:intron | 15.0% |
| !!! | AAAATGGTTTTTTCAAACAT+GGG | - | chr2_1:43033832-43033851 | Msa0208340:CDS | 20.0% |
| !!! | AAAAATGGTTTTTTCAAACA+TGG | - | chr2_1:43033833-43033852 | Msa0208340:CDS | 20.0% |
| !! | AATAAAAGATGATTAACAGA+AGG | + | chr2_1:43033898-43033917 | Msa0208350:intron | 20.0% |
| !! | ATAAAAGATGATTAACAGAA+GGG | + | chr2_1:43033899-43033918 | Msa0208350:intron | 20.0% |
| !! | TACAAAGCAATAAGATAATT+TGG | + | chr2_1:43034262-43034281 | Msa0208350:intron | 20.0% |
| !! | AATATAGACAACTTCTAATT+GGG | - | chr2_1:43034308-43034327 | Msa0208340:intron | 20.0% |
| !!! | AAAATGGTTTTTTCAAACAT+GGG | - | chr2_1:43033832-43033851 | Msa0208340:CDS | 20.0% |
| !!! | AAAAATGGTTTTTTCAAACA+TGG | - | chr2_1:43033833-43033852 | Msa0208340:CDS | 20.0% |
| !! | AATAAAAGATGATTAACAGA+AGG | + | chr2_1:43033898-43033917 | Msa0208350:intron | 20.0% |
| !! | ATAAAAGATGATTAACAGAA+GGG | + | chr2_1:43033899-43033918 | Msa0208350:intron | 20.0% |
| !! | TACAAAGCAATAAGATAATT+TGG | + | chr2_1:43034262-43034281 | Msa0208350:intron | 20.0% |
| !! | AATATAGACAACTTCTAATT+GGG | - | chr2_1:43034308-43034327 | Msa0208340:intron | 20.0% |
| !!! | TACATTTTGGCTACAAATTT+GGG | - | chr2_1:43033979-43033998 | Msa0208340:intron | 25.0% |
| !!! | ATACATTTTGGCTACAAATT+TGG | - | chr2_1:43033980-43033999 | Msa0208340:intron | 25.0% |
| ! | AATTTGTAGCCAAAATGTAT+TGG | + | chr2_1:43033980-43033999 | Msa0208350:intron | 25.0% |
| ! | ATTGTTGTACTCTCTATAAT+CGG | + | chr2_1:43034052-43034071 | Msa0208350:intron | 25.0% |
| ! | AATTTGGAGAATATATACAC+TGG | - | chr2_1:43034149-43034168 | Msa0208340:intron | 25.0% |
| ! | TTCTCCAAATTCTTTATACA+AGG | + | chr2_1:43034158-43034177 | Msa0208350:intron | 25.0% |
| ! | ATGTCCTTGTATAAAGAATT+TGG | - | chr2_1:43034165-43034184 | Msa0208340:intron | 25.0% |
| ! | GAATATAGACAACTTCTAAT+TGG | - | chr2_1:43034309-43034328 | Msa0208340:intron | 25.0% |
| ! | ATAACATATATAGAGAAGCT+GGG | - | chr2_1:43034508-43034527 | Msa0208340:intron | 25.0% |
| ! | TATAACATATATAGAGAAGC+TGG | - | chr2_1:43034509-43034528 | Msa0208340:intron | 25.0% |
| !!! | TACATTTTGGCTACAAATTT+GGG | - | chr2_1:43033979-43033998 | Msa0208340:intron | 25.0% |
| !!! | ATACATTTTGGCTACAAATT+TGG | - | chr2_1:43033980-43033999 | Msa0208340:intron | 25.0% |
| ! | AATTTGTAGCCAAAATGTAT+TGG | + | chr2_1:43033980-43033999 | Msa0208350:intron | 25.0% |
| ! | ATTGTTGTACTCTCTATAAT+CGG | + | chr2_1:43034052-43034071 | Msa0208350:intron | 25.0% |
| ! | AATTTGGAGAATATATACAC+TGG | - | chr2_1:43034149-43034168 | Msa0208340:intron | 25.0% |
| ! | TTCTCCAAATTCTTTATACA+AGG | + | chr2_1:43034158-43034177 | Msa0208350:intron | 25.0% |
| ! | ATGTCCTTGTATAAAGAATT+TGG | - | chr2_1:43034165-43034184 | Msa0208340:intron | 25.0% |
| ! | GAATATAGACAACTTCTAAT+TGG | - | chr2_1:43034309-43034328 | Msa0208340:intron | 25.0% |
| ! | ATAACATATATAGAGAAGCT+GGG | - | chr2_1:43034508-43034527 | Msa0208340:intron | 25.0% |
| ! | TATAACATATATAGAGAAGC+TGG | - | chr2_1:43034509-43034528 | Msa0208340:intron | 25.0% |
| ! | ATGAACTGACCAATACATTT+TGG | - | chr2_1:43033992-43034011 | Msa0208340:intron | 30.0% |
| TGGAAAAAGCTGATAGATAT+GGG | - | chr2_1:43034563-43034582 | Msa0208340:CDS | 30.0% | |
| ! | ATGAACTGACCAATACATTT+TGG | - | chr2_1:43033992-43034011 | Msa0208340:intron | 30.0% |
| TGGAAAAAGCTGATAGATAT+GGG | - | chr2_1:43034563-43034582 | Msa0208340:CDS | 30.0% | |
| !! | TCTGTTTGGTGTTGGAAAAA+TGG | - | chr2_1:43033848-43033867 | Msa0208340:CDS | 35.0% |
| TTTATGAATACTATAGGCCC+TGG | + | chr2_1:43034231-43034250 | Msa0208350:intron | 35.0% | |
| TGCTTTGTAGTCATTTACCA+GGG | - | chr2_1:43034251-43034270 | Msa0208340:intron | 35.0% | |
| TTGCTTTGTAGTCATTTACC+AGG | - | chr2_1:43034252-43034271 | Msa0208340:intron | 35.0% | |
| GAAGTTGAAGAATTTCTTGC+TGG | - | chr2_1:43034395-43034414 | Msa0208340:CDS | 35.0% | |
| GTGGAAAAAGCTGATAGATA+TGG | - | chr2_1:43034564-43034583 | Msa0208340:CDS | 35.0% | |
| TTAATGTTGGGAATAGAGTG+TGG | - | chr2_1:43034583-43034602 | Msa0208340:CDS | 35.0% | |
| AGCTAGTGATGCTAATGTTT+GGG | - | chr2_1:43034642-43034661 | Msa0208340:CDS | 35.0% | |
| AGGTTTATCGAGGAGAAAAT+GGG | - | chr2_1:43034674-43034693 | Msa0208340:CDS | 35.0% | |
| CAAGAGATGAATGGTACTTA+TGG | - | chr2_1:43034773-43034792 | Msa0208340:intron | 35.0% | |
| !! | TCTGTTTGGTGTTGGAAAAA+TGG | - | chr2_1:43033848-43033867 | Msa0208340:CDS | 35.0% |
| TTTATGAATACTATAGGCCC+TGG | + | chr2_1:43034231-43034250 | Msa0208350:intron | 35.0% | |
| TGCTTTGTAGTCATTTACCA+GGG | - | chr2_1:43034251-43034270 | Msa0208340:intron | 35.0% | |
| TTGCTTTGTAGTCATTTACC+AGG | - | chr2_1:43034252-43034271 | Msa0208340:intron | 35.0% | |
| GAAGTTGAAGAATTTCTTGC+TGG | - | chr2_1:43034395-43034414 | Msa0208340:CDS | 35.0% | |
| GTGGAAAAAGCTGATAGATA+TGG | - | chr2_1:43034564-43034583 | Msa0208340:CDS | 35.0% | |
| TTAATGTTGGGAATAGAGTG+TGG | - | chr2_1:43034583-43034602 | Msa0208340:CDS | 35.0% | |
| AGCTAGTGATGCTAATGTTT+GGG | - | chr2_1:43034642-43034661 | Msa0208340:CDS | 35.0% | |
| AGGTTTATCGAGGAGAAAAT+GGG | - | chr2_1:43034674-43034693 | Msa0208340:CDS | 35.0% | |
| CAAGAGATGAATGGTACTTA+TGG | - | chr2_1:43034773-43034792 | Msa0208340:intron | 35.0% | |
| AACAGAAGGGAAAGCAGAAA+TGG | + | chr2_1:43033912-43033931 | Msa0208350:intron | 40.0% | |
| GCTGGATTCAATACTCAAGA+TGG | - | chr2_1:43034333-43034352 | Msa0208340:CDS | 40.0% | |
| ! | CAGAGTCAGGAGTATGATTT+CGG | - | chr2_1:43034468-43034487 | Msa0208340:CDS | 40.0% |
| CATATATAGAGAAGCTGGGT+GGG | - | chr2_1:43034504-43034523 | Msa0208340:intron | 40.0% | |
| ACATATATAGAGAAGCTGGG+TGG | - | chr2_1:43034505-43034524 | Msa0208340:intron | 40.0% | |
| GCTAGTGATGCTAATGTTTG+GGG | - | chr2_1:43034641-43034660 | Msa0208340:CDS | 40.0% | |
| CAGCTAGTGATGCTAATGTT+TGG | - | chr2_1:43034643-43034662 | Msa0208340:CDS | 40.0% | |
| TTTATCGAGGAGAAAATGGG+TGG | - | chr2_1:43034671-43034690 | Msa0208340:CDS | 40.0% | |
| GAGGTTTATCGAGGAGAAAA+TGG | - | chr2_1:43034675-43034694 | Msa0208340:CDS | 40.0% | |
| TTTCTCCTCGATAAACCTCT+CGG | + | chr2_1:43034676-43034695 | Msa0208350:CDS | 40.0% | |
| AACAGAAGGGAAAGCAGAAA+TGG | + | chr2_1:43033912-43033931 | Msa0208350:intron | 40.0% | |
| GCTGGATTCAATACTCAAGA+TGG | - | chr2_1:43034333-43034352 | Msa0208340:CDS | 40.0% | |
| ! | CAGAGTCAGGAGTATGATTT+CGG | - | chr2_1:43034468-43034487 | Msa0208340:CDS | 40.0% |
| CATATATAGAGAAGCTGGGT+GGG | - | chr2_1:43034504-43034523 | Msa0208340:intron | 40.0% | |
| ACATATATAGAGAAGCTGGG+TGG | - | chr2_1:43034505-43034524 | Msa0208340:intron | 40.0% | |
| GCTAGTGATGCTAATGTTTG+GGG | - | chr2_1:43034641-43034660 | Msa0208340:CDS | 40.0% | |
| CAGCTAGTGATGCTAATGTT+TGG | - | chr2_1:43034643-43034662 | Msa0208340:CDS | 40.0% | |
| TTTATCGAGGAGAAAATGGG+TGG | - | chr2_1:43034671-43034690 | Msa0208340:CDS | 40.0% | |
| GAGGTTTATCGAGGAGAAAA+TGG | - | chr2_1:43034675-43034694 | Msa0208340:CDS | 40.0% | |
| TTTCTCCTCGATAAACCTCT+CGG | + | chr2_1:43034676-43034695 | Msa0208350:CDS | 40.0% | |
| TCCAACACCAAACAGATGAG+CGG | + | chr2_1:43033852-43033871 | Msa0208350:intron | 45.0% | |
| GGCTTATTTAAGCTCAAGCC+TGG | - | chr2_1:43034128-43034147 | Msa0208340:intron | 45.0% | |
| TCAATCTCATCCACAAGCAC+AGG | - | chr2_1:43034369-43034388 | Msa0208340:CDS | 45.0% | |
| GGATGCAGTATAATCGAGGT+AGG | - | chr2_1:43034422-43034441 | Msa0208340:CDS | 45.0% | |
| ACCTCGATTATACTGCATCC+AGG | + | chr2_1:43034422-43034441 | Msa0208350:CDS | 45.0% | |
| ACCTGGATGCAGTATAATCG+AGG | - | chr2_1:43034426-43034445 | Msa0208340:CDS | 45.0% | |
| GGAGTATGATTTCGGAAGCA+GGG | - | chr2_1:43034460-43034479 | Msa0208340:CDS | 45.0% | |
| ! | AGGAGTATGATTTCGGAAGC+AGG | - | chr2_1:43034461-43034480 | Msa0208340:CDS | 45.0% |
| TCTTCTGTCTAGGTCTGGAA+TGG | - | chr2_1:43034711-43034730 | Msa0208340:CDS | 45.0% | |
| GTGTTGTGGATCTTCTGTCT+AGG | - | chr2_1:43034721-43034740 | Msa0208340:CDS | 45.0% | |
| TTATGGAGTTGAGCCATGTG+CGG | - | chr2_1:43034756-43034775 | Msa0208340:CDS | 45.0% | |
| TCCAACACCAAACAGATGAG+CGG | + | chr2_1:43033852-43033871 | Msa0208350:intron | 45.0% | |
| GGCTTATTTAAGCTCAAGCC+TGG | - | chr2_1:43034128-43034147 | Msa0208340:intron | 45.0% | |
| TCAATCTCATCCACAAGCAC+AGG | - | chr2_1:43034369-43034388 | Msa0208340:CDS | 45.0% | |
| GGATGCAGTATAATCGAGGT+AGG | - | chr2_1:43034422-43034441 | Msa0208340:CDS | 45.0% | |
| ACCTCGATTATACTGCATCC+AGG | + | chr2_1:43034422-43034441 | Msa0208350:CDS | 45.0% | |
| ACCTGGATGCAGTATAATCG+AGG | - | chr2_1:43034426-43034445 | Msa0208340:CDS | 45.0% | |
| GGAGTATGATTTCGGAAGCA+GGG | - | chr2_1:43034460-43034479 | Msa0208340:CDS | 45.0% | |
| ! | AGGAGTATGATTTCGGAAGC+AGG | - | chr2_1:43034461-43034480 | Msa0208340:CDS | 45.0% |
| TCTTCTGTCTAGGTCTGGAA+TGG | - | chr2_1:43034711-43034730 | Msa0208340:CDS | 45.0% | |
| GTGTTGTGGATCTTCTGTCT+AGG | - | chr2_1:43034721-43034740 | Msa0208340:CDS | 45.0% | |
| TTATGGAGTTGAGCCATGTG+CGG | - | chr2_1:43034756-43034775 | Msa0208340:CDS | 45.0% | |
| ACAGGAAATGTGCAGGTTGC+TGG | - | chr2_1:43034351-43034370 | Msa0208340:CDS | 50.0% | |
| CACAAGCACAGGAAATGTGC+AGG | - | chr2_1:43034358-43034377 | Msa0208340:CDS | 50.0% | |
| CTGCACATTTCCTGTGCTTG+TGG | + | chr2_1:43034356-43034375 | Msa0208350:CDS | 50.0% | |
| GCAGGGATGAAGAAGAAACC+TGG | - | chr2_1:43034443-43034462 | Msa0208340:CDS | 50.0% | |
| ATGCAGAGGCAAACAGAGTC+AGG | - | chr2_1:43034481-43034500 | Msa0208340:CDS | 50.0% | |
| GATATGGGCGTAGCTGATTG+TGG | - | chr2_1:43034548-43034567 | Msa0208340:CDS | 50.0% | |
| ! | TCTGTCTAGGTCTGGAATGG+TGG | - | chr2_1:43034708-43034727 | Msa0208340:CDS | 50.0% |
| GTGGATCTTCTGTCTAGGTC+TGG | - | chr2_1:43034716-43034735 | Msa0208340:CDS | 50.0% | |
| ACAGGAAATGTGCAGGTTGC+TGG | - | chr2_1:43034351-43034370 | Msa0208340:CDS | 50.0% | |
| CACAAGCACAGGAAATGTGC+AGG | - | chr2_1:43034358-43034377 | Msa0208340:CDS | 50.0% | |
| CTGCACATTTCCTGTGCTTG+TGG | + | chr2_1:43034356-43034375 | Msa0208350:CDS | 50.0% | |
| GCAGGGATGAAGAAGAAACC+TGG | - | chr2_1:43034443-43034462 | Msa0208340:CDS | 50.0% | |
| ATGCAGAGGCAAACAGAGTC+AGG | - | chr2_1:43034481-43034500 | Msa0208340:CDS | 50.0% | |
| GATATGGGCGTAGCTGATTG+TGG | - | chr2_1:43034548-43034567 | Msa0208340:CDS | 50.0% | |
| ! | TCTGTCTAGGTCTGGAATGG+TGG | - | chr2_1:43034708-43034727 | Msa0208340:CDS | 50.0% |
| GTGGATCTTCTGTCTAGGTC+TGG | - | chr2_1:43034716-43034735 | Msa0208340:CDS | 50.0% | |
| !! | GCCGCTCATCTGTTTGGTGT+TGG | - | chr2_1:43033856-43033875 | Msa0208340:CDS | 55.0% |
| CCTCTTGCCGCTCATCTGTT+TGG | - | chr2_1:43033862-43033881 | Msa0208340:CDS | 55.0% | |
| CCAAACAGATGAGCGGCAAG+AGG | + | chr2_1:43033859-43033878 | Msa0208350:intron | 55.0% | |
| ACCTGAGAGCAAGATGCACC+AGG | + | chr2_1:43034107-43034126 | Msa0208350:intron | 55.0% | |
| GGAAGCCGAGAGGTTTATCG+AGG | - | chr2_1:43034684-43034703 | Msa0208340:CDS | 55.0% | |
| ! | GTCTAGGTCTGGAATGGTGG+AGG | - | chr2_1:43034705-43034724 | Msa0208340:CDS | 55.0% |
| ! | GGAGCATTACGCGTGTGTTG+TGG | - | chr2_1:43034735-43034754 | Msa0208340:CDS | 55.0% |
| !! | GCCGCTCATCTGTTTGGTGT+TGG | - | chr2_1:43033856-43033875 | Msa0208340:CDS | 55.0% |
| CCTCTTGCCGCTCATCTGTT+TGG | - | chr2_1:43033862-43033881 | Msa0208340:CDS | 55.0% | |
| CCAAACAGATGAGCGGCAAG+AGG | + | chr2_1:43033859-43033878 | Msa0208350:intron | 55.0% | |
| ACCTGAGAGCAAGATGCACC+AGG | + | chr2_1:43034107-43034126 | Msa0208350:intron | 55.0% | |
| GGAAGCCGAGAGGTTTATCG+AGG | - | chr2_1:43034684-43034703 | Msa0208340:CDS | 55.0% | |
| ! | GTCTAGGTCTGGAATGGTGG+AGG | - | chr2_1:43034705-43034724 | Msa0208340:CDS | 55.0% |
| ! | GGAGCATTACGCGTGTGTTG+TGG | - | chr2_1:43034735-43034754 | Msa0208340:CDS | 55.0% |
| GCCTGGTGCATCTTGCTCTC+AGG | - | chr2_1:43034111-43034130 | Msa0208340:intron | 60.0% | |
| AGAAGCTGGGTGGGATGCAG+AGG | - | chr2_1:43034495-43034514 | Msa0208340:intron | 60.0% | |
| ! | GAATGGTGGAGGAAGCCGAG+AGG | - | chr2_1:43034694-43034713 | Msa0208340:CDS | 60.0% |
| CACGCGTAATGCTCCGCACA+TGG | + | chr2_1:43034740-43034759 | Msa0208350:CDS | 60.0% | |
| GCCTGGTGCATCTTGCTCTC+AGG | - | chr2_1:43034111-43034130 | Msa0208340:intron | 60.0% | |
| AGAAGCTGGGTGGGATGCAG+AGG | - | chr2_1:43034495-43034514 | Msa0208340:intron | 60.0% | |
| ! | GAATGGTGGAGGAAGCCGAG+AGG | - | chr2_1:43034694-43034713 | Msa0208340:CDS | 60.0% |
| CACGCGTAATGCTCCGCACA+TGG | + | chr2_1:43034740-43034759 | Msa0208350:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 43033813 | 43034798 | 43033813 | ID=Msa0208350;Name=Msa0208350 |
| chr2_1 | mRNA | 43033813 | 43034798 | 43033813 | ID=Msa0208350-mRNA-1;Parent=Msa0208350;Name=Msa0208350-mRNA-1;_AED=0.98;_eAED=0.98;_QI=0|0|0|0.33|1|1|3|0|152 |
| chr2_1 | exon | 43033813 | 43033818 | 43033813 | ID=Msa0208350-mRNA-1:exon:12813;Parent=Msa0208350-mRNA-1 |
| chr2_1 | exon | 43034247 | 43034252 | 43034247 | ID=Msa0208350-mRNA-1:exon:12814;Parent=Msa0208350-mRNA-1 |
| chr2_1 | exon | 43034352 | 43034798 | 43034352 | ID=Msa0208350-mRNA-1:exon:12815;Parent=Msa0208350-mRNA-1 |
| chr2_1 | CDS | 43033813 | 43033818 | 43033813 | ID=Msa0208350-mRNA-1:cds;Parent=Msa0208350-mRNA-1 |
| chr2_1 | CDS | 43034247 | 43034252 | 43034247 | ID=Msa0208350-mRNA-1:cds;Parent=Msa0208350-mRNA-1 |
| chr2_1 | CDS | 43034352 | 43034798 | 43034352 | ID=Msa0208350-mRNA-1:cds;Parent=Msa0208350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
