AlfalfaGEDB | Msa0630660

M. sativa cultivar zhongmu-4 / Msa0630660

KEGG: K00558
GO: GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009292 GO:0009294 GO:0009987 GO:0010216 GO:0032259 GO:0032776 GO:0034641 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044728 GO:0044764 GO:0046483 GO:0051704 GO:0071704 GO:0090304 GO:1901360
PFAM: PF00385.27

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0630660	XP_039689897.1	95.000	520	26	0	1	520	324	843	0.0	1003

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0630660	sp\|A0A0P0VUY4\|CMT1_ORYSJ	60.392	510	186	6	1	503	531	1031	0.0	629

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0630660	A0A072UIN2	95.000	520	26	0	1	520	324	843	0.0	1003

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0005020	Msa0630660	0.820147	7.995671e-53	-8.615850e-47
Msa0016040	Msa0630660	0.843991	9.965676e-59	-8.615850e-47
Msa0019930	Msa0630660	0.815183	1.053154e-51	-8.615850e-47
Msa0025580	Msa0630660	0.829795	4.213925e-55	-8.615850e-47
Msa0027280	Msa0630660	0.806998	6.263492e-50	-8.615850e-47
Msa0032980	Msa0630660	0.831415	1.690783e-55	-8.615850e-47
Msa0035340	Msa0630660	0.800755	1.241966e-48	-8.615850e-47
Msa0035380	Msa0630660	0.811772	5.921754e-51	-8.615850e-47
Msa0037740	Msa0630660	0.821585	3.732929e-53	-8.615850e-47
Msa0053070	Msa0630660	0.859541	3.852373e-63	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0630660	MtrunA17_Chr4g0007641	95.000	520	26	0	1	520	324	843	0.0	1003
Msa0630660	MtrunA17_Chr7g0215341	85.962	520	73	0	1	520	308	827	0.0	916
Msa0630660	MtrunA17_Chr5g0406641	85.164	519	77	0	1	519	317	835	0.0	906
Msa0630660	MtrunA17_Chr6g0484831	85.000	520	78	0	1	520	316	835	0.0	900
Msa0630660	MtrunA17_Chr6g0464681	75.468	534	90	3	1	520	320	826	0.0	809
Msa0630660	MtrunA17_Chr6g0486931	59.961	507	197	4	1	504	414	917	0.0	626
Msa0630660	MtrunA17_Chr8g0369361	55.754	504	220	2	1	503	273	774	0.0	585
Msa0630660	MtrunA17_Chr5g0427891	57.143	343	146	1	162	504	1	342	2.47e-139	406
Msa0630660	MtrunA17_Chr2g0302601	34.383	381	206	8	122	492	1215	1561	1.05e-60	216
Msa0630660	MtrunA17_Chr4g0017221	34.726	383	200	9	122	491	1190	1535	2.93e-59	212

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0630660	AT1G80740.1	57.087	515	207	7	1	507	277	785	0.0	590
Msa0630660	AT1G69770.1	58.614	505	203	5	1	500	321	824	0.0	589
Msa0630660	AT4G19020.1	55.644	505	220	2	1	503	779	1281	0.0	583
Msa0630660	AT4G19020.2	55.644	505	220	2	1	503	731	1233	0.0	582
Msa0630660	AT4G14140.3	35.829	374	208	8	122	491	1168	1513	1.37e-59	213
Msa0630660	AT4G14140.1	35.829	374	208	8	122	491	1168	1513	1.37e-59	213
Msa0630660	AT4G14140.2	35.450	378	212	8	118	491	1190	1539	1.98e-59	213
Msa0630660	AT4G08990.1	35.401	387	216	9	111	491	1148	1506	1.42e-58	211
Msa0630660	AT5G49160.2	35.013	377	209	10	118	488	1091	1437	5.92e-57	206
Msa0630660	AT5G49160.1	35.013	377	209	10	118	488	1179	1525	6.06e-57	206

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Find 135 sgRNAs with CRISPR-Local

Find 245 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACACGCATCCGAAACTG+AGG	0.657217	4_3:-12622451	None:intergenic
AAAATTAACATACTGGAGGG+AGG	0.675330	4_3:-12622864	None:intergenic
AAACCACTAATCCCTTGACA+AGG	0.639560	4_3:-12622199	None:intergenic
AAACTCTGGAATTGTATGAA+TGG	0.497426	4_3:+12624987	Msa0630660:three_prime_UTR
AAAGAGTGTATCTGAAATCT+GGG	0.501903	4_3:+12623655	Msa0630660:CDS
AAAGGACGGGCAAGACAACT+TGG	0.522582	4_3:-12624856	None:intergenic
AAATGCGGTTGCTGTTCCTG+TGG	0.590835	4_3:+12624750	Msa0630660:CDS
AAATTCGCTGGTGGGTATCT+GGG	0.401492	4_3:+12622349	Msa0630660:CDS
AACCACTAATCCCTTGACAA+GGG	0.672154	4_3:-12622198	None:intergenic
AAGACAACTTGGATACTTAA+AGG	0.290097	4_3:-12624845	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTTGTCACTAAAGGATATG+AGG	+	chr4_3:12622010-12622029	Msa0630660:CDS	30.0%
ATGCATTATCAAGCTAGAAT+GGG	+	chr4_3:12622400-12622419	Msa0630660:CDS	30.0%
TAGATAAGGAACACTGTAAT+TGG	+	chr4_3:12622723-12622742	Msa0630660:intron	30.0%
TGTCATAATGCAGGAAATTA+CGG	+	chr4_3:12622774-12622793	Msa0630660:intron	30.0%
AGCAAAATTAACATACTGGA+GGG	-	chr4_3:12622870-12622889	None:intergenic	30.0%
TGTGAGCAAAATTAACATAC+TGG	-	chr4_3:12622874-12622893	None:intergenic	30.0%
TTTGATTCCATTTCTTTCCT+TGG	+	chr4_3:12622931-12622950	Msa0630660:intron	30.0%
TGTTTGATAAGAGAAAACCA+AGG	-	chr4_3:12622951-12622970	None:intergenic	30.0%
CAAAAGAAGATTAGTACCAA+AGG	-	chr4_3:12623684-12623703	None:intergenic	30.0%
TCAAAATAAATGCATCGCTA+AGG	-	chr4_3:12623707-12623726	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_3	gene	12621296	12625095	12621296	ID=Msa0630660;Name=Msa0630660
chr4_3	mRNA	12621296	12625095	12621296	ID=Msa0630660-mRNA-1;Parent=Msa0630660;Name=Msa0630660-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0\|1\|0.92\|1\|1\|1\|13\|186\|520
chr4_3	exon	12621296	12621544	12621296	ID=Msa0630660-mRNA-1:exon:3692;Parent=Msa0630660-mRNA-1
chr4_3	exon	12621815	12621873	12621815	ID=Msa0630660-mRNA-1:exon:3693;Parent=Msa0630660-mRNA-1
chr4_3	exon	12621986	12622052	12621986	ID=Msa0630660-mRNA-1:exon:3694;Parent=Msa0630660-mRNA-1
chr4_3	exon	12622169	12622498	12622169	ID=Msa0630660-mRNA-1:exon:3695;Parent=Msa0630660-mRNA-1
chr4_3	exon	12622614	12622682	12622614	ID=Msa0630660-mRNA-1:exon:3696;Parent=Msa0630660-mRNA-1
chr4_3	exon	12622787	12622873	12622787	ID=Msa0630660-mRNA-1:exon:3697;Parent=Msa0630660-mRNA-1
chr4_3	exon	12622972	12623059	12622972	ID=Msa0630660-mRNA-1:exon:3698;Parent=Msa0630660-mRNA-1
chr4_3	exon	12623378	12623496	12623378	ID=Msa0630660-mRNA-1:exon:3699;Parent=Msa0630660-mRNA-1
chr4_3	exon	12623585	12623686	12623585	ID=Msa0630660-mRNA-1:exon:3700;Parent=Msa0630660-mRNA-1
chr4_3	exon	12623767	12623810	12623767	ID=Msa0630660-mRNA-1:exon:3701;Parent=Msa0630660-mRNA-1
chr4_3	exon	12623902	12623971	12623902	ID=Msa0630660-mRNA-1:exon:3702;Parent=Msa0630660-mRNA-1
chr4_3	exon	12624269	12624372	12624269	ID=Msa0630660-mRNA-1:exon:3703;Parent=Msa0630660-mRNA-1
chr4_3	exon	12624735	12625095	12624735	ID=Msa0630660-mRNA-1:exon:3704;Parent=Msa0630660-mRNA-1
chr4_3	CDS	12621296	12621544	12621296	ID=Msa0630660-mRNA-1:cds;Parent=Msa0630660-mRNA-1
chr4_3	CDS	12621815	12621873	12621815	ID=Msa0630660-mRNA-1:cds;Parent=Msa0630660-mRNA-1
chr4_3	CDS	12621986	12622052	12621986	ID=Msa0630660-mRNA-1:cds;Parent=Msa0630660-mRNA-1
chr4_3	CDS	12622169	12622498	12622169	ID=Msa0630660-mRNA-1:cds;Parent=Msa0630660-mRNA-1
chr4_3	CDS	12622614	12622682	12622614	ID=Msa0630660-mRNA-1:cds;Parent=Msa0630660-mRNA-1
chr4_3	CDS	12622787	12622873	12622787	ID=Msa0630660-mRNA-1:cds;Parent=Msa0630660-mRNA-1
chr4_3	CDS	12622972	12623059	12622972	ID=Msa0630660-mRNA-1:cds;Parent=Msa0630660-mRNA-1
chr4_3	CDS	12623378	12623496	12623378	ID=Msa0630660-mRNA-1:cds;Parent=Msa0630660-mRNA-1
chr4_3	CDS	12623585	12623686	12623585	ID=Msa0630660-mRNA-1:cds;Parent=Msa0630660-mRNA-1
chr4_3	CDS	12623767	12623810	12623767	ID=Msa0630660-mRNA-1:cds;Parent=Msa0630660-mRNA-1
chr4_3	CDS	12623902	12623971	12623902	ID=Msa0630660-mRNA-1:cds;Parent=Msa0630660-mRNA-1
chr4_3	CDS	12624269	12624372	12624269	ID=Msa0630660-mRNA-1:cds;Parent=Msa0630660-mRNA-1
chr4_3	CDS	12624735	12624909	12624735	ID=Msa0630660-mRNA-1:cds;Parent=Msa0630660-mRNA-1
chr4_3	three_prime_UTR	12624910	12625095	12624910	ID=Msa0630660-mRNA-1:three_prime_utr;Parent=Msa0630660-mRNA-1

Gene Sequence

>Msa0630660

GTGAGGAATGAGACAGCTGAAGACTTTTTATCTCTTTTAAAAGAGTGGTTTAAATTGTGTGAGAAGTTTGTTCTGAATGGAACAGAAAATATAGATTCTGATTTGAATGCTTGTGAAGAGGCTGGTGAAGAAGCTGATGATGAAGCAATGGATAGTTCATCTGACTCTGAGGTATTTGAGGTTGAAAGACTACTCTCTGTATGCTATGGTGATCCCAACGAAGATGAAAAACTAGGACTGTATTTCAAAGTGCAGTGGAAGGGTTATGACTCCAGTTATGATACATGGGAGCCAATTGAGGGCTTGAGCAATTGTAAAGAGGCTATGAAAGAATTTGTCACTAAAGGATATGAGGATAAGATATTGCCTCTTCCTGGTCAAGCTGATTTCATTTGTGGTGGACCCCCTTGTCAAGGGATTAGTGGTTTCAATCGCTTTAGGAACAAAAATGCTCCTATGGATGACATAAAAAATAAGCAATTATTGGTCTACATGAATATTATTGAATTTTTGAAGCCTAAATATATATTGATGGAGAATGTTGTTGACATTTTGAAATTCGCTGGTGGGTATCTGGGGCGTTATGCTGTAGGACGTCTAGTGGCCATGCATTATCAAGCTAGAATGGGAATGATGGCTGCAGGGTCGTACGGCCTTCCTCAGTTTCGGATGCGTGTTTTTCTTTGGGGAGCTCTTCCTACCCAGAATTTACCTTCATATCCGCTACCAACTCATGAGGTTGAATCGAGATCTGTTCTTACCACGGAGTTTGAAGAAATTACGGTAGCATATACTACTAATGAAAAGTGTCAGCTTGCCCCAGCGTTGTACCTGGGTGACGCAATTGATGACCTCCCTCCAGTTGAAAATGATGACAGTGATGATGAAAAGAGTTATGTGACCACTCCTCATACTGATTTTCAGAGATATATCAGATTAAAGAGAAGTGAGATGGTGAATTACACAGCTGACTCTGAAAGTGCACCAAGTGGTCTGCTGTATGATCACAGGCCATATAAGTTAAATAACGATGACTATGAGAGAGTTTGCCTCATTCCAAAGAAGAAGGGGGCAAACTTCAGGGACCTAAAGGGTGTGCTTGTTAATAAGAATAAAGTGGAGTTGGACCCCTCTGTTGAAAGAGTGTATCTGAAATCTGGGAAGCCTTTGGTCCCGGATTATGCGATGAAATTTGTCCGTGGTACTTCCTCTAAGCCATTTGGTCGACTTTGGTGGGACGAAATTGTGTCCACAGTTGTGACCCGGCCAGAACCTCACAACCAGGTTCTTATCCATCCAAAGCAAGACAGAGTTCTTACCATTCGAGAGAATGCAAGGCTACAGGGATTTCCAGATTGCTATAAACTTTGTGGCCCTATAAAAGAAAGGTACATACAAGTTGGAAATGCGGTTGCTGTTCCTGTGGGCCTTGCCCTCGGATACACACTGGGTTTAGCAATTCAAGGACGCTCTGGTGATAATCCTTTGACAACTCTCCCCTTTAAGTATCCAAGTTGTCTTGCCCGTCCTTTAGCTGTAGTTGATGATGATGGTTCAAGTTGA

Protein sequence

>Msa0630660

VRNETAEDFLSLLKEWFKLCEKFVLNGTENIDSDLNACEEAGEEADDEAMDSSSDSEVFEVERLLSVCYGDPNEDEKLGLYFKVQWKGYDSSYDTWEPIEGLSNCKEAMKEFVTKGYEDKILPLPGQADFICGGPPCQGISGFNRFRNKNAPMDDIKNKQLLVYMNIIEFLKPKYILMENVVDILKFAGGYLGRYAVGRLVAMHYQARMGMMAAGSYGLPQFRMRVFLWGALPTQNLPSYPLPTHEVESRSVLTTEFEEITVAYTTNEKCQLAPALYLGDAIDDLPPVENDDSDDEKSYVTTPHTDFQRYIRLKRSEMVNYTADSESAPSGLLYDHRPYKLNNDDYERVCLIPKKKGANFRDLKGVLVNKNKVELDPSVERVYLKSGKPLVPDYAMKFVRGTSSKPFGRLWWDEIVSTVVTRPEPHNQVLIHPKQDRVLTIRENARLQGFPDCYKLCGPIKERYIQVGNAVAVPVGLALGYTLGLAIQGRSGDNPLTTLPFKYPSCLARPLAVVDDDGSS*