AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0034800


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0034800 MtrunA17_Chr1g0196961 82.267 344 7 4 1 302 1 332 0.0 554
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0034800 AT2G38680.1 59.211 304 77 4 42 300 40 341 1.47e-120 350

Find 87 sgRNAs with CRISPR-Local

Find 241 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAAATGGAGGATATCAAAT+TGG 0.201664 1_1:+62785100 Msa0034800:CDS
CGCTGGTCCTCAAAAGCTTC+AGG 0.241520 1_1:+62785190 Msa0034800:CDS
CTTCATAAGGAGAAATTAAT+AGG 0.248523 1_1:-62787707 None:intergenic
TCCAATATTAACAGGTTCTA+AGG 0.257059 1_1:+62786455 Msa0034800:intron
AGAACCAATGTTCTCCTTCT+TGG 0.265210 1_1:+62787083 Msa0034800:CDS
TCAGCCTCTGCATGAATTAC+AGG 0.322297 1_1:-62784756 None:intergenic
GCTAAGAGTATATGGTTAAC+TGG 0.327198 1_1:-62787648 None:intergenic
TTCATATAACTGCTGCCTTT+TGG 0.338973 1_1:-62785712 None:intergenic
ATGATACTGCTAAGAGTATA+TGG 0.344765 1_1:-62787656 None:intergenic
TCATTTGCTTAAAATATTAC+CGG 0.362053 1_1:-62787999 None:intergenic
ATCACCGAACGTTCGTGAAC+AGG 0.381496 1_1:-62787021 None:intergenic
AGTTTGTTGTGGAGCAAAAC+AGG 0.387622 1_1:-62785152 None:intergenic
AAATGAGCATGCTCTTGATA+TGG 0.389669 1_1:+62786993 Msa0034800:CDS
ACTTGTTAGCATTCTTCATA+AGG 0.393716 1_1:-62787720 None:intergenic
CAATGAGACGTGTTTATCAT+AGG 0.396301 1_1:-62784697 None:intergenic
TTGTGGAAAACATTTGGAAA+TGG 0.410077 1_1:+62785085 Msa0034800:CDS
GAAATGGAGGATATCAAATT+GGG 0.419430 1_1:+62785101 Msa0034800:CDS
TTCAGAATTGACGCTGGTGG+TGG 0.419541 1_1:+62785124 Msa0034800:CDS
CCTGTATTAATATTCTCTGC+AGG 0.422018 1_1:+62786305 Msa0034800:CDS
ACGCATGCTCTTCTTATTGA+AGG 0.428415 1_1:+62786031 Msa0034800:CDS
CCCTTGGGCTGGAAGAGAAA+AGG 0.437854 1_1:+62785763 Msa0034800:CDS
TTTCCCCTCCTGGATATGGC+TGG 0.439476 1_1:+62787769 Msa0034800:three_prime_UTR
CCTGCAGAGAATATTAATAC+AGG 0.451901 1_1:-62786305 None:intergenic
TGGTGATCACACTGGAGACT+TGG 0.455229 1_1:+62787103 Msa0034800:CDS
GGAGAAATTAATAGGAACCT+TGG 0.457417 1_1:-62787699 None:intergenic
GAGAAATTAATAGGAACCTT+GGG 0.466094 1_1:-62787698 None:intergenic
AGCTTCATTGTAAACATACA+TGG 0.466970 1_1:-62787834 None:intergenic
TGCGCCTGTTCACGAACGTT+CGG 0.469232 1_1:+62787017 Msa0034800:CDS
ATGTGAAGATAGTATCCAAC+AGG 0.474848 1_1:+62786503 Msa0034800:CDS
CTTGCTGCAATTCGTTCCGC+TGG 0.481743 1_1:+62785173 Msa0034800:CDS
AGTTGGTGGTGACGATGGAT+TGG 0.487760 1_1:-62784915 None:intergenic
GCTTACATAGTTAAGTTAAG+TGG 0.491803 1_1:-62784842 None:intergenic
AGACGTGTTTATCATAGGTT+CGG 0.493867 1_1:-62784692 None:intergenic
GCTAATCGCCAGCCATATCC+AGG 0.493885 1_1:-62787777 None:intergenic
TGGTGACGATGGATTGGAGT+TGG 0.494711 1_1:-62784909 None:intergenic
TACGATACTCGAATTTCTGT+GGG 0.505866 1_1:+62787146 Msa0034800:CDS
TGGAAAACATTTGGAAATGG+AGG 0.511488 1_1:+62785088 Msa0034800:CDS
CACCTTTAAAAGATACAAGT+TGG 0.511666 1_1:-62786543 None:intergenic
ATCCAGAATATGATGCCAAA+AGG 0.511735 1_1:+62785697 Msa0034800:CDS
CAGGTCACAAGTAAAATGAA+TGG 0.513317 1_1:-62784737 None:intergenic
ATTGTTAAATACCATCCTGT+TGG 0.514081 1_1:-62786518 None:intergenic
ATATGAACATTACCATCCAT+TGG 0.515894 1_1:+62785728 Msa0034800:CDS
ATTAGCAGTTATGTTATGCT+AGG 0.518158 1_1:+62787794 Msa0034800:three_prime_UTR
CACTTTGATAACTTCCCACA+TGG 0.519877 1_1:-62787589 None:intergenic
CTGTATTAATATTCTCTGCA+GGG 0.521088 1_1:+62786306 Msa0034800:CDS
CTCCTTCTTGGTGATCACAC+TGG 0.541831 1_1:+62787095 Msa0034800:CDS
GGTGATCACACTGGAGACTT+GGG 0.548044 1_1:+62787104 Msa0034800:CDS
TCAGAATTGACGCTGGTGGT+GGG 0.550336 1_1:+62785125 Msa0034800:CDS
GAATTGCAGCAAGTTTGTTG+TGG 0.553040 1_1:-62785163 None:intergenic
GTCTCTCATATGTGCTCAAG+TGG 0.559631 1_1:+62787612 Msa0034800:CDS
GCTACACTTCTTCAACATCA+AGG 0.560582 1_1:+62784959 Msa0034800:CDS
AAAGTGACGTGGGAGAAAGT+TGG 0.564371 1_1:-62784932 None:intergenic
GAGAAAGTTGGTGGTGACGA+TGG 0.566081 1_1:-62784920 None:intergenic
TAGGAGAAAATTCCAATGGA+TGG 0.567633 1_1:-62785740 None:intergenic
TGATGTTGAAGAAGTGTAGC+GGG 0.570667 1_1:-62784956 None:intergenic
GGAGACTTGGGAATGTCTGA+TGG 0.575829 1_1:+62787116 Msa0034800:CDS
TTACGATACTCGAATTTCTG+TGG 0.585256 1_1:+62787145 Msa0034800:CDS
TGACGATGGATTGGAGTTGG+AGG 0.602766 1_1:-62784906 None:intergenic
AAAGGAAACTCATGGTAGAG+TGG 0.614036 1_1:+62785781 Msa0034800:CDS
TTCTCTTCCAGCCCAAGGGT+AGG 0.615641 1_1:-62785759 None:intergenic
CTCCAGTGTGATCACCAAGA+AGG 0.618740 1_1:-62787097 None:intergenic
CATGCTCTTCTTATTGAAGG+AGG 0.621492 1_1:+62786034 Msa0034800:CDS
AGGGTAGGAGAAAATTCCAA+TGG 0.624608 1_1:-62785744 None:intergenic
GGAAGAGAAAAGGAAACTCA+TGG 0.628987 1_1:+62785773 Msa0034800:CDS
GTGACGTGGGAGAAAGTTGG+TGG 0.633859 1_1:-62784929 None:intergenic
ATCGCCAGCCATATCCAGGA+GGG 0.634611 1_1:-62787773 None:intergenic
GCTTGCTGATATCATTGAAG+AGG 0.634896 1_1:+62786328 Msa0034800:CDS
AACAGGATGGTATTTAACAA+TGG 0.634907 1_1:+62786520 Msa0034800:CDS
TGCAGAATGATGCGCCCATG+TGG 0.644000 1_1:+62787574 Msa0034800:intron
GGCGATAACTCATTTGAGTG+TGG 0.645636 1_1:-62784885 None:intergenic
GCTTCATTGTAAACATACAT+GGG 0.648678 1_1:-62787833 None:intergenic
ACTTTGATAACTTCCCACAT+GGG 0.653578 1_1:-62787588 None:intergenic
GAAGATAGTATCCAACAGGA+TGG 0.654156 1_1:+62786507 Msa0034800:CDS
ATCACCAAGAAGGAGAACAT+TGG 0.655582 1_1:-62787087 None:intergenic
GTGTAGCGGGAAAAGTGACG+TGG 0.663698 1_1:-62784943 None:intergenic
ATTGGGTTCAGAATTGACGC+TGG 0.663874 1_1:+62785118 Msa0034800:CDS
TCTCTCATATGTGCTCAAGT+GGG 0.665937 1_1:+62787613 Msa0034800:CDS
GGGTTCAGAATTGACGCTGG+TGG 0.671068 1_1:+62785121 Msa0034800:CDS
GCAGAATGATGCGCCCATGT+GGG 0.682785 1_1:+62787575 Msa0034800:intron
TCGCCAGCCATATCCAGGAG+GGG 0.683257 1_1:-62787772 None:intergenic
TTGATGTTGAAGAAGTGTAG+CGG 0.688175 1_1:-62784957 None:intergenic
TAAGTGAGTTCTCAACGTTG+TGG 0.688216 1_1:-62787312 None:intergenic
TGTAGCGGGAAAAGTGACGT+GGG 0.689625 1_1:-62784942 None:intergenic
TGCGACAGTGACATAGACAC+CGG 0.704097 1_1:+62787980 Msa0034800:three_prime_UTR
GTGACCTGTAATTCATGCAG+AGG 0.707599 1_1:+62784752 Msa0034800:five_prime_UTR
CATGTGGGAAGTTATCAAAG+TGG 0.709745 1_1:+62787590 Msa0034800:CDS
AATCGCCAGCCATATCCAGG+AGG 0.724907 1_1:-62787774 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATGTAATTTTTTTTCTTTTA+AGG + chr1_1:62785042-62785061 Msa0034800:intron 10.0%
!!! TGTAATTTTTTTTCTTTTAA+GGG + chr1_1:62785043-62785062 Msa0034800:intron 10.0%
!! AAATATAAATCTTAGAATTT+GGG - chr1_1:62785483-62785502 None:intergenic 10.0%
!! AAAATATAAATCTTAGAATT+TGG - chr1_1:62785484-62785503 None:intergenic 10.0%
!!! ATTTATATTTTCTTTTTTGT+AGG + chr1_1:62785493-62785512 Msa0034800:intron 10.0%
!!! TATTCTGTTTTTTTTTTTAT+GGG + chr1_1:62785864-62785883 Msa0034800:intron 10.0%
!! ATAATAACTAAATTAATGTT+TGG - chr1_1:62787422-62787441 None:intergenic 10.0%
!! AAAAAAATTACATGCAATAA+GGG - chr1_1:62785035-62785054 None:intergenic 15.0%
!! AAAAAAAATTACATGCAATA+AGG - chr1_1:62785036-62785055 None:intergenic 15.0%
!!! TCATCTTAAGTTTTTATATT+CGG - chr1_1:62785361-62785380 None:intergenic 15.0%
!!! GTATTCTGTTTTTTTTTTTA+TGG + chr1_1:62785863-62785882 Msa0034800:intron 15.0%
!! AAAAATAACAAAATGGAAAA+TGG - chr1_1:62786270-62786289 None:intergenic 15.0%
!! AAAAAATTACATGCAATAAG+GGG - chr1_1:62785034-62785053 None:intergenic 20.0%
!! TCAAGCATTATTAATGAAAT+GGG - chr1_1:62785228-62785247 None:intergenic 20.0%
!! TTCAAGCATTATTAATGAAA+TGG - chr1_1:62785229-62785248 None:intergenic 20.0%
!!! TTAAGATTTGGTGTATTATT+AGG + chr1_1:62785999-62786018 Msa0034800:intron 20.0%
!! ATATATTTGTCAAAGAAAGA+TGG - chr1_1:62786157-62786176 None:intergenic 20.0%
!!! TGATATGTTCATTTTATATC+AGG + chr1_1:62786189-62786208 Msa0034800:intron 20.0%
!!! TTTCCATTTTGTTATTTTTC+AGG + chr1_1:62786271-62786290 Msa0034800:intron 20.0%
!! TTTCCTGAAAAATAACAAAA+TGG - chr1_1:62786277-62786296 None:intergenic 20.0%
!!! AAGTCTATTTTGTTTTATGT+TGG + chr1_1:62786357-62786376 Msa0034800:intron 20.0%
!! AATACACAATAAATGAAAGT+TGG - chr1_1:62786580-62786599 None:intergenic 20.0%
!!! TATGCAAATATATTTTTCAG+AGG + chr1_1:62786625-62786644 Msa0034800:intron 20.0%
!! TTAATTATTATGTAATTCCC+CGG - chr1_1:62786651-62786670 None:intergenic 20.0%
!! CATAATAATTAATTGCCTTT+AGG + chr1_1:62786659-62786678 Msa0034800:intron 20.0%
!!! ATTTTGTATATGAGAAAACA+AGG - chr1_1:62786849-62786868 None:intergenic 20.0%
!! TAACTAAATTAATGTTTGGA+AGG - chr1_1:62787418-62787437 None:intergenic 20.0%
!! TCATTTGCTTAAAATATTAC+CGG - chr1_1:62788002-62788021 None:intergenic 20.0%
!!! ATTTTGTTTTCCCATTTTTC+TGG + chr1_1:62784814-62784833 Msa0034800:five_prime_UTR 25.0%
! AAAAATTACATGCAATAAGG+GGG - chr1_1:62785033-62785052 None:intergenic 25.0%
!!! ATTTTGTTGTGGAAAACATT+TGG + chr1_1:62785079-62785098 Msa0034800:CDS 25.0%
! CAAGCATTATTAATGAAATG+GGG - chr1_1:62785227-62785246 None:intergenic 25.0%
!! GTATCTCAATTTTACAAAAG+TGG - chr1_1:62785271-62785290 None:intergenic 25.0%
! TTGTAAAATTGAGATACTAG+TGG + chr1_1:62785274-62785293 Msa0034800:intron 25.0%
! TGTAAAATTGAGATACTAGT+GGG + chr1_1:62785275-62785294 Msa0034800:intron 25.0%
!!! TTAACAAAGTTTTGGGTTAA+TGG + chr1_1:62785539-62785558 Msa0034800:intron 25.0%
! AATAGTCATGTAACATACTT+TGG - chr1_1:62785574-62785593 None:intergenic 25.0%
!! TAATGCTAACATAGCTTTTA+GGG + chr1_1:62786090-62786109 Msa0034800:CDS 25.0%
!! TTCTGAGCTTTTTGAATTTT+TGG + chr1_1:62786120-62786139 Msa0034800:CDS 25.0%
!!! TATTTTGTTTTATGTTGGCA+AGG + chr1_1:62786362-62786381 Msa0034800:intron 25.0%
!! ATTTCTCTTCATTTTCTTGT+CGG + chr1_1:62786394-62786413 Msa0034800:intron 25.0%
!! TACTATCTTCACATTTTTGA+AGG - chr1_1:62786497-62786516 None:intergenic 25.0%
! TTTATTGTGTATTTGTTTGC+TGG + chr1_1:62786587-62786606 Msa0034800:intron 25.0%
! ATTTAATTATGTTTAAGCCC+TGG + chr1_1:62786729-62786748 Msa0034800:intron 25.0%
! GAGAAGTAAAAATTAAGAAC+TGG - chr1_1:62786934-62786953 None:intergenic 25.0%
! CCAGAAAAAAAATTAAGTCA+GGG - chr1_1:62787271-62787290 None:intergenic 25.0%
! ACCAGAAAAAAAATTAAGTC+AGG - chr1_1:62787272-62787291 None:intergenic 25.0%
!!! AGCTTTTGATGTTGTTTTAA+TGG + chr1_1:62787348-62787367 Msa0034800:CDS 25.0%
!! CTTCCTATATGATTTGTATA+AGG + chr1_1:62787468-62787487 Msa0034800:intron 25.0%
! TCACCTTATACAAATCATAT+AGG - chr1_1:62787474-62787493 None:intergenic 25.0%
! TATTTCTTATGTTAAGTACC+AGG + chr1_1:62787506-62787525 Msa0034800:intron 25.0%
! GCAAGTTAAAATTAGATACT+CGG - chr1_1:62787543-62787562 None:intergenic 25.0%
! CTTCATAAGGAGAAATTAAT+AGG - chr1_1:62787710-62787729 None:intergenic 25.0%
! TATGCAAAAGCAAAAAATCA+GGG - chr1_1:62787932-62787951 None:intergenic 25.0%
! ATATGCAAAAGCAAAAAATC+AGG - chr1_1:62787933-62787952 None:intergenic 25.0%
GCTTACATAGTTAAGTTAAG+TGG - chr1_1:62784845-62784864 None:intergenic 30.0%
AAAGGTAAAAAAGAGAAGAG+GGG - chr1_1:62785003-62785022 None:intergenic 30.0%
GAAAGGTAAAAAAGAGAAGA+GGG - chr1_1:62785004-62785023 None:intergenic 30.0%
AAAATTACATGCAATAAGGG+GGG - chr1_1:62785032-62785051 None:intergenic 30.0%
! TCGTTTTCTACATTTTGTTG+TGG + chr1_1:62785068-62785087 Msa0034800:CDS 30.0%
TTGTGGAAAACATTTGGAAA+TGG + chr1_1:62785085-62785104 Msa0034800:CDS 30.0%
GAAATGGAGGATATCAAATT+GGG + chr1_1:62785101-62785120 Msa0034800:CDS 30.0%
! AAAAAAACCTGAAGCTTTTG+AGG - chr1_1:62785200-62785219 None:intergenic 30.0%
! GTGTTTAAGAGTCTCATTTT+TGG + chr1_1:62785307-62785326 Msa0034800:intron 30.0%
!! TTTAAGAGTCTCATTTTTGG+AGG + chr1_1:62785310-62785329 Msa0034800:intron 30.0%
!! TTAAGAGTCTCATTTTTGGA+GGG + chr1_1:62785311-62785330 Msa0034800:intron 30.0%
!! TCATTTTTGGAGGGTTTTTT+TGG + chr1_1:62785320-62785339 Msa0034800:intron 30.0%
!! CATTTTTGGAGGGTTTTTTT+GGG + chr1_1:62785321-62785340 Msa0034800:intron 30.0%
! ACCTTACAAATCTGTTTTGT+AGG + chr1_1:62785443-62785462 Msa0034800:intron 30.0%
TCCTACAAAACAGATTTGTA+AGG - chr1_1:62785447-62785466 None:intergenic 30.0%
! ATGCCACATTAACAAAGTTT+TGG + chr1_1:62785531-62785550 Msa0034800:intron 30.0%
! TGCCACATTAACAAAGTTTT+GGG + chr1_1:62785532-62785551 Msa0034800:intron 30.0%
AACCCAAAACTTTGTTAATG+TGG - chr1_1:62785537-62785556 None:intergenic 30.0%
! TCCTAATTTTTGACGTGTAA+GGG - chr1_1:62785616-62785635 None:intergenic 30.0%
! TTCCTAATTTTTGACGTGTA+AGG - chr1_1:62785617-62785636 None:intergenic 30.0%
TATCTAATCGAGTCATTTCT+AGG + chr1_1:62785648-62785667 Msa0034800:intron 30.0%
ATATGAACATTACCATCCAT+TGG + chr1_1:62785728-62785747 Msa0034800:CDS 30.0%
TAACTAGTAAGTAAACTCTG+GGG - chr1_1:62785909-62785928 None:intergenic 30.0%
GTAACTAGTAAGTAAACTCT+GGG - chr1_1:62785910-62785929 None:intergenic 30.0%
TGTAACTAGTAAGTAAACTC+TGG - chr1_1:62785911-62785930 None:intergenic 30.0%
TGATGCTGTAACTTAAGATT+TGG + chr1_1:62785987-62786006 Msa0034800:intron 30.0%
!! AGATTTGGTGTATTATTAGG+TGG + chr1_1:62786002-62786021 Msa0034800:intron 30.0%
!! GATTTGGTGTATTATTAGGT+GGG + chr1_1:62786003-62786022 Msa0034800:intron 30.0%
!! ATTTGGTGTATTATTAGGTG+GGG + chr1_1:62786004-62786023 Msa0034800:intron 30.0%
! CTAATGCTAACATAGCTTTT+AGG + chr1_1:62786089-62786108 Msa0034800:CDS 30.0%
!! TGAGCTTTTTGAATTTTTGG+AGG + chr1_1:62786123-62786142 Msa0034800:CDS 30.0%
CTGTATTAATATTCTCTGCA+GGG + chr1_1:62786306-62786325 Msa0034800:CDS 30.0%
!!! TCGCTTTTTCCAATATTAAC+AGG + chr1_1:62786447-62786466 Msa0034800:intron 30.0%
TCCAATATTAACAGGTTCTA+AGG + chr1_1:62786455-62786474 Msa0034800:intron 30.0%
ATTGTTAAATACCATCCTGT+TGG - chr1_1:62786521-62786540 None:intergenic 30.0%
AACAGGATGGTATTTAACAA+TGG + chr1_1:62786520-62786539 Msa0034800:CDS 30.0%
! CACCTTTAAAAGATACAAGT+TGG - chr1_1:62786546-62786565 None:intergenic 30.0%
!! CAAATATATTTTTCAGAGGC+CGG + chr1_1:62786629-62786648 Msa0034800:intron 30.0%
!! AAATATATTTTTCAGAGGCC+GGG + chr1_1:62786630-62786649 Msa0034800:intron 30.0%
!! TACTTCTCAATTTTGATCAC+AGG + chr1_1:62786946-62786965 Msa0034800:intron 30.0%
GAGCTCAATTAATGTCTATA+AGG + chr1_1:62787224-62787243 Msa0034800:intron 30.0%
!!! CCCTGACTTAATTTTTTTTC+TGG + chr1_1:62787268-62787287 Msa0034800:intron 30.0%
!! TTAATGGTAAGTTGATTAGC+TGG + chr1_1:62787364-62787383 Msa0034800:intron 30.0%
ATTAATGTTTGGAAGGAACA+AGG - chr1_1:62787411-62787430 None:intergenic 30.0%
! ATGATACTGCTAAGAGTATA+TGG - chr1_1:62787659-62787678 None:intergenic 30.0%
GAGAAATTAATAGGAACCTT+GGG - chr1_1:62787701-62787720 None:intergenic 30.0%
! ACTTGTTAGCATTCTTCATA+AGG - chr1_1:62787723-62787742 None:intergenic 30.0%
ATTAGCAGTTATGTTATGCT+AGG + chr1_1:62787794-62787813 Msa0034800:three_prime_UTR 30.0%
GCTTCATTGTAAACATACAT+GGG - chr1_1:62787836-62787855 None:intergenic 30.0%
AGCTTCATTGTAAACATACA+TGG - chr1_1:62787837-62787856 None:intergenic 30.0%
CAATGAGACGTGTTTATCAT+AGG - chr1_1:62784700-62784719 None:intergenic 35.0%
CAGGTCACAAGTAAAATGAA+TGG - chr1_1:62784740-62784759 None:intergenic 35.0%
!! AGTGGTGTTACCAGAAAAAT+GGG - chr1_1:62784827-62784846 None:intergenic 35.0%
!! AAGTGGTGTTACCAGAAAAA+TGG - chr1_1:62784828-62784847 None:intergenic 35.0%
! TTGATGTTGAAGAAGTGTAG+CGG - chr1_1:62784960-62784979 None:intergenic 35.0%
AAGGTAAAAAAGAGAAGAGG+GGG - chr1_1:62785002-62785021 None:intergenic 35.0%
GGAAAGGTAAAAAAGAGAAG+AGG - chr1_1:62785005-62785024 None:intergenic 35.0%
TGGAAAACATTTGGAAATGG+AGG + chr1_1:62785088-62785107 Msa0034800:CDS 35.0%
GGAAATGGAGGATATCAAAT+TGG + chr1_1:62785100-62785119 Msa0034800:CDS 35.0%
TCCCTTACACGTCAAAAATT+AGG + chr1_1:62785612-62785631 Msa0034800:intron 35.0%
ATCCAGAATATGATGCCAAA+AGG + chr1_1:62785697-62785716 Msa0034800:CDS 35.0%
! TTCATATAACTGCTGCCTTT+TGG - chr1_1:62785715-62785734 None:intergenic 35.0%
TAGGAGAAAATTCCAATGGA+TGG - chr1_1:62785743-62785762 None:intergenic 35.0%
! CAATGCTGGTCTACATATAT+AGG + chr1_1:62785821-62785840 Msa0034800:intron 35.0%
AACTAGTAAGTAAACTCTGG+GGG - chr1_1:62785908-62785927 None:intergenic 35.0%
ATTGAATATCACTGTACCTC+TGG - chr1_1:62785954-62785973 None:intergenic 35.0%
CCTGCAGAGAATATTAATAC+AGG - chr1_1:62786308-62786327 None:intergenic 35.0%
CCTGTATTAATATTCTCTGC+AGG + chr1_1:62786305-62786324 Msa0034800:CDS 35.0%
GCCTTAGAACCTGTTAATAT+TGG - chr1_1:62786459-62786478 None:intergenic 35.0%
ATGTGAAGATAGTATCCAAC+AGG + chr1_1:62786503-62786522 Msa0034800:CDS 35.0%
! GGCCAACTTGTATCTTTTAA+AGG + chr1_1:62786541-62786560 Msa0034800:CDS 35.0%
!! AATATATTTTTCAGAGGCCG+GGG + chr1_1:62786631-62786650 Msa0034800:intron 35.0%
! TAATTGCCTTTAGGTTTCAC+TGG + chr1_1:62786668-62786687 Msa0034800:intron 35.0%
GTATTACCAGTGAAACCTAA+AGG - chr1_1:62786677-62786696 None:intergenic 35.0%
AAATGAGCATGCTCTTGATA+TGG + chr1_1:62786993-62787012 Msa0034800:CDS 35.0%
TTACGATACTCGAATTTCTG+TGG + chr1_1:62787145-62787164 Msa0034800:CDS 35.0%
TACGATACTCGAATTTCTGT+GGG + chr1_1:62787146-62787165 Msa0034800:CDS 35.0%
AAATCACAGCAATTAGAGTC+TGG - chr1_1:62787194-62787213 None:intergenic 35.0%
!! CTGGTATTTTGAATTGTTGC+AGG + chr1_1:62787287-62787306 Msa0034800:intron 35.0%
TTATGTTAAGTACCAGGTGA+AGG + chr1_1:62787512-62787531 Msa0034800:intron 35.0%
TATGTTAAGTACCAGGTGAA+GGG + chr1_1:62787513-62787532 Msa0034800:intron 35.0%
! ACTTTGATAACTTCCCACAT+GGG - chr1_1:62787591-62787610 None:intergenic 35.0%
! GCTAAGAGTATATGGTTAAC+TGG - chr1_1:62787651-62787670 None:intergenic 35.0%
! TTTTTGTCTTACACATCCCA+AGG + chr1_1:62787682-62787701 Msa0034800:three_prime_UTR 35.0%
GGAGAAATTAATAGGAACCT+TGG - chr1_1:62787702-62787721 None:intergenic 35.0%
! ATTTTCTGTTGCGATTGTGA+GGG + chr1_1:62787887-62787906 Msa0034800:three_prime_UTR 35.0%
! TGATGTTGAAGAAGTGTAGC+GGG - chr1_1:62784959-62784978 None:intergenic 40.0%
GCTACACTTCTTCAACATCA+AGG + chr1_1:62784959-62784978 Msa0034800:CDS 40.0%
!! AGTTTGTTGTGGAGCAAAAC+AGG - chr1_1:62785155-62785174 None:intergenic 40.0%
!! GAATTGCAGCAAGTTTGTTG+TGG - chr1_1:62785166-62785185 None:intergenic 40.0%
!!! TTTTGGAGGGTTTTTTTGGG+AGG + chr1_1:62785324-62785343 Msa0034800:intron 40.0%
!!! TTTGGAGGGTTTTTTTGGGA+GGG + chr1_1:62785325-62785344 Msa0034800:intron 40.0%
!!! TTTTGGGTTAATGGAACTCG+CGG + chr1_1:62785548-62785567 Msa0034800:intron 40.0%
! TGCCTTTTGGCATCATATTC+TGG - chr1_1:62785702-62785721 None:intergenic 40.0%
AGGGTAGGAGAAAATTCCAA+TGG - chr1_1:62785747-62785766 None:intergenic 40.0%
! TTGGAATTTTCTCCTACCCT+TGG + chr1_1:62785747-62785766 Msa0034800:CDS 40.0%
! TGGAATTTTCTCCTACCCTT+GGG + chr1_1:62785748-62785767 Msa0034800:CDS 40.0%
GGAAGAGAAAAGGAAACTCA+TGG + chr1_1:62785773-62785792 Msa0034800:CDS 40.0%
AAAGGAAACTCATGGTAGAG+TGG + chr1_1:62785781-62785800 Msa0034800:CDS 40.0%
TGGTAGAGTGGTATGTGATT+CGG + chr1_1:62785793-62785812 Msa0034800:intron 40.0%
ACGCATGCTCTTCTTATTGA+AGG + chr1_1:62786031-62786050 Msa0034800:CDS 40.0%
CATGCTCTTCTTATTGAAGG+AGG + chr1_1:62786034-62786053 Msa0034800:CDS 40.0%
!! GCTAACATAGCTTTTAGGGA+AGG + chr1_1:62786094-62786113 Msa0034800:CDS 40.0%
GAAGATTCGATTGCTGACAT+TGG + chr1_1:62786241-62786260 Msa0034800:intron 40.0%
! GCTTGCTGATATCATTGAAG+AGG + chr1_1:62786328-62786347 Msa0034800:CDS 40.0%
GAAGATAGTATCCAACAGGA+TGG + chr1_1:62786507-62786526 Msa0034800:CDS 40.0%
AGCAAGTCATTGTCATCAGT+TGG - chr1_1:62787056-62787075 None:intergenic 40.0%
AGAACCAATGTTCTCCTTCT+TGG + chr1_1:62787083-62787102 Msa0034800:CDS 40.0%
ATCACCAAGAAGGAGAACAT+TGG - chr1_1:62787090-62787109 None:intergenic 40.0%
TAAGTGAGTTCTCAACGTTG+TGG - chr1_1:62787315-62787334 None:intergenic 40.0%
!! TGGTAAGTTGATTAGCTGGA+TGG + chr1_1:62787368-62787387 Msa0034800:intron 40.0%
ATGTTAAGTACCAGGTGAAG+GGG + chr1_1:62787514-62787533 Msa0034800:intron 40.0%
! CACTTTGATAACTTCCCACA+TGG - chr1_1:62787592-62787611 None:intergenic 40.0%
CATGTGGGAAGTTATCAAAG+TGG + chr1_1:62787590-62787609 Msa0034800:CDS 40.0%
TCTCTCATATGTGCTCAAGT+GGG + chr1_1:62787613-62787632 Msa0034800:CDS 40.0%
! GGGAAAAAAGTGCAGTAAAG+GGG - chr1_1:62787755-62787774 None:intergenic 40.0%
! GGGGAAAAAAGTGCAGTAAA+GGG - chr1_1:62787756-62787775 None:intergenic 40.0%
! AGGGGAAAAAAGTGCAGTAA+AGG - chr1_1:62787757-62787776 None:intergenic 40.0%
! CATTTTCTGTTGCGATTGTG+AGG + chr1_1:62787886-62787905 Msa0034800:three_prime_UTR 40.0%
GTGACCTGTAATTCATGCAG+AGG + chr1_1:62784752-62784771 Msa0034800:five_prime_UTR 45.0%
TCAGCCTCTGCATGAATTAC+AGG - chr1_1:62784759-62784778 None:intergenic 45.0%
GGCGATAACTCATTTGAGTG+TGG - chr1_1:62784888-62784907 None:intergenic 45.0%
AAAGTGACGTGGGAGAAAGT+TGG - chr1_1:62784935-62784954 None:intergenic 45.0%
AGAGGGGGTGAAGAAGAAAA+AGG - chr1_1:62784987-62785006 None:intergenic 45.0%
ATTGGGTTCAGAATTGACGC+TGG + chr1_1:62785118-62785137 Msa0034800:CDS 45.0%
GAGTGTGACTCGATTGATCT+TGG - chr1_1:62785397-62785416 None:intergenic 45.0%
!! ACGTGTAAGGGAGCATTAGA+GGG - chr1_1:62785604-62785623 None:intergenic 45.0%
! GAGTCATTTCTAGGCAGTCA+TGG + chr1_1:62785657-62785676 Msa0034800:intron 45.0%
CTGGATTATCCTGCTGCAAA+AGG - chr1_1:62785683-62785702 None:intergenic 45.0%
!! GTGATTCGGTTTCTCAATGC+TGG + chr1_1:62785807-62785826 Msa0034800:intron 45.0%
! TCACACATTTTGTGCACCAG+AGG + chr1_1:62785935-62785954 Msa0034800:intron 45.0%
!! TTTTTCAGACTCACTCGCCA+GGG - chr1_1:62786749-62786768 None:intergenic 45.0%
!!! TTTTTTCAGACTCACTCGCC+AGG - chr1_1:62786750-62786769 None:intergenic 45.0%
! CGAACGTTCGGTGATATTGA+TGG + chr1_1:62787029-62787048 Msa0034800:intron 45.0%
GCTGGATGGTAACACATCTT+TGG + chr1_1:62787382-62787401 Msa0034800:intron 45.0%
GTCTCTCATATGTGCTCAAG+TGG + chr1_1:62787612-62787631 Msa0034800:CDS 45.0%
!!! CTTTTTTCCCCTCCTGGATA+TGG + chr1_1:62787765-62787784 Msa0034800:three_prime_UTR 45.0%
!! TGACGATGGATTGGAGTTGG+AGG - chr1_1:62784909-62784928 None:intergenic 50.0%
!! TGGTGACGATGGATTGGAGT+TGG - chr1_1:62784912-62784931 None:intergenic 50.0%
!! AGTTGGTGGTGACGATGGAT+TGG - chr1_1:62784918-62784937 None:intergenic 50.0%
!! GAGAAAGTTGGTGGTGACGA+TGG - chr1_1:62784923-62784942 None:intergenic 50.0%
! TGTAGCGGGAAAAGTGACGT+GGG - chr1_1:62784945-62784964 None:intergenic 50.0%
! CAATAAGGGGGGTGTAGGAA+AGG - chr1_1:62785021-62785040 None:intergenic 50.0%
! ACATGCAATAAGGGGGGTGT+AGG - chr1_1:62785026-62785045 None:intergenic 50.0%
TTCAGAATTGACGCTGGTGG+TGG + chr1_1:62785124-62785143 Msa0034800:CDS 50.0%
TCAGAATTGACGCTGGTGGT+GGG + chr1_1:62785125-62785144 Msa0034800:CDS 50.0%
!! CTGAAGCTTTTGAGGACCAG+CGG - chr1_1:62785192-62785211 None:intergenic 50.0%
! TTGAGATACTAGTGGGCGTG+AGG + chr1_1:62785282-62785301 Msa0034800:intron 50.0%
!! CGTGTAAGGGAGCATTAGAG+GGG - chr1_1:62785603-62785622 None:intergenic 50.0%
!! GACGTGTAAGGGAGCATTAG+AGG - chr1_1:62785605-62785624 None:intergenic 50.0%
! ATTTTCTCCTACCCTTGGGC+TGG + chr1_1:62785752-62785771 Msa0034800:CDS 50.0%
! CCTTTTCTCTTCCAGCCCAA+GGG - chr1_1:62785766-62785785 None:intergenic 50.0%
! TCCTTTTCTCTTCCAGCCCA+AGG - chr1_1:62785767-62785786 None:intergenic 50.0%
ATCACCGAACGTTCGTGAAC+AGG - chr1_1:62787024-62787043 None:intergenic 50.0%
! CTCCTTCTTGGTGATCACAC+TGG + chr1_1:62787095-62787114 Msa0034800:CDS 50.0%
CTCCAGTGTGATCACCAAGA+AGG - chr1_1:62787100-62787119 None:intergenic 50.0%
TGGTGATCACACTGGAGACT+TGG + chr1_1:62787103-62787122 Msa0034800:CDS 50.0%
GGTGATCACACTGGAGACTT+GGG + chr1_1:62787104-62787123 Msa0034800:CDS 50.0%
GGAGACTTGGGAATGTCTGA+TGG + chr1_1:62787116-62787135 Msa0034800:CDS 50.0%
TTAAGTACCAGGTGAAGGGG+TGG + chr1_1:62787517-62787536 Msa0034800:intron 50.0%
!!! ACTGCACTTTTTTCCCCTCC+TGG + chr1_1:62787759-62787778 Msa0034800:three_prime_UTR 50.0%
TGCGACAGTGACATAGACAC+CGG + chr1_1:62787980-62787999 Msa0034800:three_prime_UTR 50.0%
GTGACGTGGGAGAAAGTTGG+TGG - chr1_1:62784932-62784951 None:intergenic 55.0%
! GTGTAGCGGGAAAAGTGACG+TGG - chr1_1:62784946-62784965 None:intergenic 55.0%
GGGTTCAGAATTGACGCTGG+TGG + chr1_1:62785121-62785140 Msa0034800:CDS 55.0%
CTTGCTGCAATTCGTTCCGC+TGG + chr1_1:62785173-62785192 Msa0034800:CDS 55.0%
CGCTGGTCCTCAAAAGCTTC+AGG + chr1_1:62785190-62785209 Msa0034800:CDS 55.0%
! AGATACTAGTGGGCGTGAGG+TGG + chr1_1:62785285-62785304 Msa0034800:intron 55.0%
GTCACACTCCAAACGTGCAG+TGG + chr1_1:62785408-62785427 Msa0034800:intron 55.0%
ACACTCCAAACGTGCAGTGG+TGG + chr1_1:62785411-62785430 Msa0034800:intron 55.0%
CACTCCAAACGTGCAGTGGT+GGG + chr1_1:62785412-62785431 Msa0034800:intron 55.0%
! CAGTCATGGCCTTTTGCAGC+AGG + chr1_1:62785671-62785690 Msa0034800:intron 55.0%
TTCTCTTCCAGCCCAAGGGT+AGG - chr1_1:62785762-62785781 None:intergenic 55.0%
! CCCTTGGGCTGGAAGAGAAA+AGG + chr1_1:62785763-62785782 Msa0034800:CDS 55.0%
TGCGCCTGTTCACGAACGTT+CGG + chr1_1:62787017-62787036 Msa0034800:CDS 55.0%
CATGGGCGCATCATTCTGCA+GGG - chr1_1:62787574-62787593 None:intergenic 55.0%
ACATGGGCGCATCATTCTGC+AGG - chr1_1:62787575-62787594 None:intergenic 55.0%
TGCAGAATGATGCGCCCATG+TGG + chr1_1:62787574-62787593 Msa0034800:intron 55.0%
GCAGAATGATGCGCCCATGT+GGG + chr1_1:62787575-62787594 Msa0034800:intron 55.0%
TTTCCCCTCCTGGATATGGC+TGG + chr1_1:62787769-62787788 Msa0034800:three_prime_UTR 55.0%
ATCGCCAGCCATATCCAGGA+GGG - chr1_1:62787776-62787795 None:intergenic 55.0%
AATCGCCAGCCATATCCAGG+AGG - chr1_1:62787777-62787796 None:intergenic 55.0%
GCTAATCGCCAGCCATATCC+AGG - chr1_1:62787780-62787799 None:intergenic 55.0%
ACTGCCCACCACTGCACGTT+TGG - chr1_1:62785419-62785438 None:intergenic 60.0%
TCGCCAGCCATATCCAGGAG+GGG - chr1_1:62787775-62787794 None:intergenic 60.0%
TACTCGGCCACCCCTTCACC+TGG - chr1_1:62787527-62787546 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 62784693 62788053 62784693 ID=Msa0034800;Name=Msa0034800
chr1_1 mRNA 62784693 62788053 62784693 ID=Msa0034800-mRNA-1;Parent=Msa0034800;Name=Msa0034800-mRNA-1;_AED=0.10;_eAED=0.10;_QI=202|0.77|0.7|1|0.77|0.7|10|412|302
chr1_1 exon 62784693 62784980 62784693 ID=Msa0034800-mRNA-1:exon:19845;Parent=Msa0034800-mRNA-1
chr1_1 exon 62785064 62785211 62785064 ID=Msa0034800-mRNA-1:exon:19846;Parent=Msa0034800-mRNA-1
chr1_1 exon 62785690 62785802 62785690 ID=Msa0034800-mRNA-1:exon:19847;Parent=Msa0034800-mRNA-1
chr1_1 exon 62786021 62786144 62786021 ID=Msa0034800-mRNA-1:exon:19848;Parent=Msa0034800-mRNA-1
chr1_1 exon 62786293 62786349 62786293 ID=Msa0034800-mRNA-1:exon:19849;Parent=Msa0034800-mRNA-1
chr1_1 exon 62786469 62786562 62786469 ID=Msa0034800-mRNA-1:exon:19850;Parent=Msa0034800-mRNA-1
chr1_1 exon 62786968 62787038 62786968 ID=Msa0034800-mRNA-1:exon:19851;Parent=Msa0034800-mRNA-1
chr1_1 exon 62787083 62787174 62787083 ID=Msa0034800-mRNA-1:exon:19852;Parent=Msa0034800-mRNA-1
chr1_1 exon 62787309 62787369 62787309 ID=Msa0034800-mRNA-1:exon:19853;Parent=Msa0034800-mRNA-1
chr1_1 exon 62787579 62788053 62787579 ID=Msa0034800-mRNA-1:exon:19854;Parent=Msa0034800-mRNA-1
chr1_1 five_prime_UTR 62784693 62784894 62784693 ID=Msa0034800-mRNA-1:five_prime_utr;Parent=Msa0034800-mRNA-1
chr1_1 CDS 62784895 62784980 62784895 ID=Msa0034800-mRNA-1:cds;Parent=Msa0034800-mRNA-1
chr1_1 CDS 62785064 62785211 62785064 ID=Msa0034800-mRNA-1:cds;Parent=Msa0034800-mRNA-1
chr1_1 CDS 62785690 62785802 62785690 ID=Msa0034800-mRNA-1:cds;Parent=Msa0034800-mRNA-1
chr1_1 CDS 62786021 62786144 62786021 ID=Msa0034800-mRNA-1:cds;Parent=Msa0034800-mRNA-1
chr1_1 CDS 62786293 62786349 62786293 ID=Msa0034800-mRNA-1:cds;Parent=Msa0034800-mRNA-1
chr1_1 CDS 62786469 62786562 62786469 ID=Msa0034800-mRNA-1:cds;Parent=Msa0034800-mRNA-1
chr1_1 CDS 62786968 62787038 62786968 ID=Msa0034800-mRNA-1:cds;Parent=Msa0034800-mRNA-1
chr1_1 CDS 62787083 62787174 62787083 ID=Msa0034800-mRNA-1:cds;Parent=Msa0034800-mRNA-1
chr1_1 CDS 62787309 62787369 62787309 ID=Msa0034800-mRNA-1:cds;Parent=Msa0034800-mRNA-1
chr1_1 CDS 62787579 62787641 62787579 ID=Msa0034800-mRNA-1:cds;Parent=Msa0034800-mRNA-1
chr1_1 three_prime_UTR 62787642 62788053 62787642 ID=Msa0034800-mRNA-1:three_prime_utr;Parent=Msa0034800-mRNA-1
Gene Sequence

>Msa0034800

ATGAGTTATCGCCTCCAACTCCAATCCATCGTCACCACCAACTTTCTCCCACGTCACTTTTCCCGCTACACTTCTTCAACATCAAGGGTTTCGTTTTCTACATTTTGTTGTGGAAAACATTTGGAAATGGAGGATATCAAATTGGGTTCAGAATTGACGCTGGTGGTGGGTGATCCTGTTTTGCTCCACAACAAACTTGCTGCAATTCGTTCCGCTGGTCCTCAAAAGCTTCAGCAGGATAATCCAGAATATGATGCCAAAAGGCAGCAGTTATATGAACATTACCATCCATTGGAATTTTCTCCTACCCTTGGGCTGGAAGAGAAAAGGAAACTCATGGTAGAGTGGTGGGGAAAAACGCATGCTCTTCTTATTGAAGGAGGACTTACATATGAATCAATAAAACAATCAGTTGCTAATGCTAACATAGCTTTTAGGGAAGGTGTTTCTGAGCTTTTTGAATTTTTGGAGGAAAGAGACATTCCTGTATTAATATTCTCTGCAGGGCTTGCTGATATCATTGAAGAGGTTCTAAGGCAGAAGCTTCGCAGATCCTTCAAAAATGTGAAGATAGTATCCAACAGGATGGTATTTAACAATGGCCAACTTGTATCTTTTAAAGGAAAATTGATTCACAGCTTAAATAAAAATGAGCATGCTCTTGATATGGCTGCGCCTGTTCACGAACGTTCGAGAACCAATGTTCTCCTTCTTGGTGATCACACTGGAGACTTGGGAATGTCTGATGGTTTAAATTACGATACTCGAATTTCTGTGGGATTTTTGAACCACAACGTTGAGAACTCACTTAGCTGCTATCGAGAAGCTTTTGATGTTGTTTTAATGAATGATGCGCCCATGTGGGAAGTTATCAAAGTGGTCTCTCATATGTGCTCAAGTGGGAAGTGA

Protein sequence

>Msa0034800

MSYRLQLQSIVTTNFLPRHFSRYTSSTSRVSFSTFCCGKHLEMEDIKLGSELTLVVGDPVLLHNKLAAIRSAGPQKLQQDNPEYDAKRQQLYEHYHPLEFSPTLGLEEKRKLMVEWWGKTHALLIEGGLTYESIKQSVANANIAFREGVSELFEFLEERDIPVLIFSAGLADIIEEVLRQKLRRSFKNVKIVSNRMVFNNGQLVSFKGKLIHSLNKNEHALDMAAPVHERSRTNVLLLGDHTGDLGMSDGLNYDTRISVGFLNHNVENSLSCYREAFDVVLMNDAPMWEVIKVVSHMCSSGK*