AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0472870


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0472870 MtrunA17_Chr3g0128821 99.415 171 1 0 1 171 1 171 4.46e-127 353
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0472870 AT3G56290.1 60.920 174 62 2 1 170 1 172 5.25e-70 209

Find 62 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTCAAGAATCATACATAAA+TGG 0.180528 3_3:-75303591 Msa0472870:exon
AAACGGAAACTATAATTCTT+TGG 0.229221 3_3:-75302341 Msa0472870:three_prime_UTR
TTCTTCCTTCTTCTCTTGTT+TGG 0.250102 3_3:+75303451 None:intergenic
ACAAAGTTCAAATTCATTCT+AGG 0.289101 3_3:-75303622 Msa0472870:five_prime_UTR
GGAAGTTCCCTTTGGCCATT+AGG 0.300224 3_3:-75302527 Msa0472870:three_prime_UTR
AACAAATGGAGAATTGATTC+AGG 0.315306 3_3:-75302477 Msa0472870:three_prime_UTR
TGTGGACTATGTGGCACCTT+AGG 0.339207 3_3:+75303797 None:intergenic
TAAGAATGCAACAGTTCATT+TGG 0.340491 3_3:+75302631 None:intergenic
GCTAGAGAAGCCACAAAATC+TGG 0.342436 3_3:-75303335 Msa0472870:CDS
TTTAGTAGAAGCAAAATTGT+AGG 0.344583 3_3:+75302382 None:intergenic
AACATGCAAGGTGTGCAAAA+AGG 0.352645 3_3:-75302859 Msa0472870:CDS
AACGGAAACTATAATTCTTT+GGG 0.352846 3_3:-75302340 Msa0472870:three_prime_UTR
CACTTGTCTTGCTTCACCCT+TGG 0.361736 3_3:+75302833 None:intergenic
CTTTATCATTATATCTTGTC+TGG 0.378103 3_3:-75302587 Msa0472870:three_prime_UTR
CAGACAAGATATAATGATAA+AGG 0.383938 3_3:+75302588 None:intergenic
TGTGCAGAGAAGGCAAAATC+TGG 0.391867 3_3:-75302780 Msa0472870:CDS
GGAGCTCTTAGAAGGAAAAT+TGG 0.394746 3_3:-75303165 Msa0472870:CDS
AATCATACATAAATGGGTCT+TGG 0.402158 3_3:-75303584 Msa0472870:exon
CTCAAGAATCATACATAAAT+GGG 0.403921 3_3:-75303590 Msa0472870:exon
GAGAATATGTTGAAGAGGGT+TGG 0.421247 3_3:-75302890 Msa0472870:CDS
ATAGTTGTGTCTCAAACAAA+TGG 0.426309 3_3:-75302491 Msa0472870:three_prime_UTR
TGAGCATCTTGTGCAGATCT+TGG 0.428742 3_3:+75303371 None:intergenic
AGAATATGTTGAAGAGGGTT+GGG 0.437524 3_3:-75302889 Msa0472870:CDS
ATCATACATAAATGGGTCTT+GGG 0.442001 3_3:-75303583 Msa0472870:exon
CCATTGGTGGAAGTTCCCTT+TGG 0.444226 3_3:-75302535 Msa0472870:three_prime_UTR
CACTGTTGCCACTCACAACT+TGG 0.444238 3_3:+75303764 None:intergenic
TGCAGTATGGAGCTCTTAGA+AGG 0.445617 3_3:-75303173 Msa0472870:intron
GTGGACTATGTGGCACCTTA+GGG 0.458509 3_3:+75303798 None:intergenic
TTCAGCCAAACAAGAGAAGA+AGG 0.459242 3_3:-75303456 Msa0472870:CDS
ATAAAATTAAAATCACCTAA+TGG 0.470916 3_3:+75302512 None:intergenic
AGAACAAATGAGCAGGGAAC+AGG 0.497325 3_3:-75303312 Msa0472870:intron
GAAAATTGGTGGGACTTACA+AGG 0.499480 3_3:-75303151 Msa0472870:CDS
GCAAGACAAGTGGACAAGCT+TGG 0.505588 3_3:-75302822 Msa0472870:CDS
AATCTGGAGAACAAATGAGC+AGG 0.519508 3_3:-75303319 Msa0472870:CDS
CAAAGGGAACTTCCACCAAT+GGG 0.525664 3_3:+75302536 None:intergenic
AAAATCACCTAATGGCCAAA+GGG 0.529684 3_3:+75302520 None:intergenic
TGTTGCCACTCACAACTTGG+TGG 0.530474 3_3:+75303767 None:intergenic
CTCTTAGAAGGAAAATTGGT+GGG 0.533115 3_3:-75303161 Msa0472870:CDS
GGGCATCAAATCGCAGCCAT+AGG 0.537198 3_3:+75303719 None:intergenic
TGGTCATAAAGAGAAGAGTC+TGG 0.537908 3_3:+75302746 None:intergenic
GGATGGAGAATATGTTGAAG+AGG 0.544093 3_3:-75302895 Msa0472870:CDS
CAACTTGGTGGTTAACATTG+TGG 0.549129 3_3:+75303779 None:intergenic
ATCAAATCGCAGCCATAGGT+TGG 0.558242 3_3:+75303723 None:intergenic
CCAAAGGGAACTTCCACCAA+TGG 0.558456 3_3:+75302535 None:intergenic
ACAAAATTAACACCAACCTA+TGG 0.559764 3_3:-75303735 Msa0472870:five_prime_UTR
TCATGTAGCATGTGCAGAGA+AGG 0.566077 3_3:-75302790 Msa0472870:CDS
TAAAATCACCTAATGGCCAA+AGG 0.580336 3_3:+75302519 None:intergenic
ATCTGGAGAACAAATGAGCA+GGG 0.583865 3_3:-75303318 Msa0472870:CDS
GTATAATAAGGAGGGGTCAG+TGG 0.591399 3_3:+75303554 None:intergenic
AGATGCTCAGCTTATACAAG+AGG 0.596458 3_3:-75303357 Msa0472870:CDS
TCCACTACAATACCATGTCA+TGG 0.604222 3_3:+75302726 None:intergenic
GATGGAGAATATGTTGAAGA+GGG 0.605246 3_3:-75302894 Msa0472870:CDS
GCTCTTAGAAGGAAAATTGG+TGG 0.606049 3_3:-75303162 Msa0472870:CDS
AAAACTTGTATAATAAGGAG+GGG 0.613562 3_3:+75303547 None:intergenic
CAAGGGTGAAGCAAGACAAG+TGG 0.622923 3_3:-75302832 Msa0472870:CDS
GGTTAACATTGTGGACTATG+TGG 0.624904 3_3:+75303788 None:intergenic
ACCATGACATGGTATTGTAG+TGG 0.643236 3_3:-75302727 Msa0472870:three_prime_UTR
TTCTCTTTATGACCATGACA+TGG 0.643568 3_3:-75302738 Msa0472870:exon
GTTAACCACCAAGTTGTGAG+TGG 0.647087 3_3:-75303772 Msa0472870:five_prime_UTR
TTGGGTAGACAAAACATGCA+AGG 0.652458 3_3:-75302871 Msa0472870:CDS
TGTGAGTGGCAACAGTGCTG+TGG 0.655065 3_3:-75303758 Msa0472870:five_prime_UTR
AAGTTCAAATTCATTCTAGG+TGG 0.670611 3_3:-75303619 Msa0472870:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATCCAATTTAAAAAAATT+AGG + chr3_3:75303715-75303734 None:intergenic 10.0%
!! TAATCCAATTTAAAAAAATT+AGG + chr3_3:75303715-75303734 None:intergenic 10.0%
!! TCAATTAATTTCATTTCTTA+TGG + chr3_3:75303073-75303092 None:intergenic 15.0%
!! ATAAGAAAATGAAAAATGTT+GGG + chr3_3:75303099-75303118 None:intergenic 15.0%
!! AATAAGAAAATGAAAAATGT+TGG + chr3_3:75303100-75303119 None:intergenic 15.0%
!! TAGTTGAATTATATATTGTT+TGG - chr3_3:75303166-75303185 Msa0472870:CDS 15.0%
!!! GAATGAAATTTTAAAGTATA+TGG - chr3_3:75303459-75303478 Msa0472870:CDS 15.0%
!! AAGGAAAATAAAAATTTGTA+TGG + chr3_3:75303524-75303543 None:intergenic 15.0%
!! ATAAAATTAAAATCACCTAA+TGG + chr3_3:75303619-75303638 None:intergenic 15.0%
!!! TTGTCCTAATTTTTTTAAAT+TGG - chr3_3:75303708-75303727 Msa0472870:five_prime_UTR 15.0%
!! TCAATTAATTTCATTTCTTA+TGG + chr3_3:75303073-75303092 None:intergenic 15.0%
!! ATAAGAAAATGAAAAATGTT+GGG + chr3_3:75303099-75303118 None:intergenic 15.0%
!! AATAAGAAAATGAAAAATGT+TGG + chr3_3:75303100-75303119 None:intergenic 15.0%
!! TAGTTGAATTATATATTGTT+TGG - chr3_3:75303166-75303185 Msa0472870:CDS 15.0%
!!! GAATGAAATTTTAAAGTATA+TGG - chr3_3:75303459-75303478 Msa0472870:CDS 15.0%
!! AAGGAAAATAAAAATTTGTA+TGG + chr3_3:75303524-75303543 None:intergenic 15.0%
!! ATAAAATTAAAATCACCTAA+TGG + chr3_3:75303619-75303638 None:intergenic 15.0%
!!! TTGTCCTAATTTTTTTAAAT+TGG - chr3_3:75303708-75303727 Msa0472870:five_prime_UTR 15.0%
!!! TTCATTATTTTCAGTATTTG+GGG + chr3_3:75302432-75302451 None:intergenic 20.0%
!!! CTTCATTATTTTCAGTATTT+GGG + chr3_3:75302433-75302452 None:intergenic 20.0%
!! AAAAACTTGTATAATAAGGA+GGG + chr3_3:75302585-75302604 None:intergenic 20.0%
!! GAAGAAAAACTTGTATAATA+AGG + chr3_3:75302589-75302608 None:intergenic 20.0%
!!! TTTTTGTAAATAATGCAGTA+TGG - chr3_3:75302942-75302961 Msa0472870:intron 20.0%
!!! TTTTTCAAATCTTATGTTGA+AGG - chr3_3:75303002-75303021 Msa0472870:intron 20.0%
!!! ATCAGAATTTTAATCTGAAA+CGG - chr3_3:75303770-75303789 Msa0472870:five_prime_UTR 20.0%
!!! TTCATTATTTTCAGTATTTG+GGG + chr3_3:75302432-75302451 None:intergenic 20.0%
!!! CTTCATTATTTTCAGTATTT+GGG + chr3_3:75302433-75302452 None:intergenic 20.0%
!! AAAAACTTGTATAATAAGGA+GGG + chr3_3:75302585-75302604 None:intergenic 20.0%
!! GAAGAAAAACTTGTATAATA+AGG + chr3_3:75302589-75302608 None:intergenic 20.0%
!!! TTTTTGTAAATAATGCAGTA+TGG - chr3_3:75302942-75302961 Msa0472870:intron 20.0%
!!! TTTTTCAAATCTTATGTTGA+AGG - chr3_3:75303002-75303021 Msa0472870:intron 20.0%
!!! ATCAGAATTTTAATCTGAAA+CGG - chr3_3:75303770-75303789 Msa0472870:five_prime_UTR 20.0%
!! GCTTCATTATTTTCAGTATT+TGG + chr3_3:75302434-75302453 None:intergenic 25.0%
! ACAAAGTTCAAATTCATTCT+AGG - chr3_3:75302506-75302525 Msa0472870:three_prime_UTR 25.0%
! CTCAAGAATCATACATAAAT+GGG - chr3_3:75302538-75302557 Msa0472870:three_prime_UTR 25.0%
! AAAACTTGTATAATAAGGAG+GGG + chr3_3:75302584-75302603 None:intergenic 25.0%
! GAAAAACTTGTATAATAAGG+AGG + chr3_3:75302586-75302605 None:intergenic 25.0%
! CAGACAAGATATAATGATAA+AGG + chr3_3:75303543-75303562 None:intergenic 25.0%
! CTTTATCATTATATCTTGTC+TGG - chr3_3:75303541-75303560 Msa0472870:CDS 25.0%
! TTTAGTAGAAGCAAAATTGT+AGG + chr3_3:75303749-75303768 None:intergenic 25.0%
! AAACGGAAACTATAATTCTT+TGG - chr3_3:75303787-75303806 Msa0472870:five_prime_UTR 25.0%
! AACGGAAACTATAATTCTTT+GGG - chr3_3:75303788-75303807 Msa0472870:five_prime_UTR 25.0%
!! GCTTCATTATTTTCAGTATT+TGG + chr3_3:75302434-75302453 None:intergenic 25.0%
! ACAAAGTTCAAATTCATTCT+AGG - chr3_3:75302506-75302525 Msa0472870:three_prime_UTR 25.0%
! CTCAAGAATCATACATAAAT+GGG - chr3_3:75302538-75302557 Msa0472870:three_prime_UTR 25.0%
! AAAACTTGTATAATAAGGAG+GGG + chr3_3:75302584-75302603 None:intergenic 25.0%
! GAAAAACTTGTATAATAAGG+AGG + chr3_3:75302586-75302605 None:intergenic 25.0%
! CAGACAAGATATAATGATAA+AGG + chr3_3:75303543-75303562 None:intergenic 25.0%
! CTTTATCATTATATCTTGTC+TGG - chr3_3:75303541-75303560 Msa0472870:CDS 25.0%
! TTTAGTAGAAGCAAAATTGT+AGG + chr3_3:75303749-75303768 None:intergenic 25.0%
! AAACGGAAACTATAATTCTT+TGG - chr3_3:75303787-75303806 Msa0472870:five_prime_UTR 25.0%
! AACGGAAACTATAATTCTTT+GGG - chr3_3:75303788-75303807 Msa0472870:five_prime_UTR 25.0%
ACAAAATTAACACCAACCTA+TGG - chr3_3:75302393-75302412 Msa0472870:three_prime_UTR 30.0%
AAGTTCAAATTCATTCTAGG+TGG - chr3_3:75302509-75302528 Msa0472870:three_prime_UTR 30.0%
GCTCAAGAATCATACATAAA+TGG - chr3_3:75302537-75302556 Msa0472870:three_prime_UTR 30.0%
AATCATACATAAATGGGTCT+TGG - chr3_3:75302544-75302563 Msa0472870:three_prime_UTR 30.0%
ATCATACATAAATGGGTCTT+GGG - chr3_3:75302545-75302564 Msa0472870:three_prime_UTR 30.0%
! AGTTTTTCTTCAAAGTCATC+AGG - chr3_3:75302598-75302617 Msa0472870:three_prime_UTR 30.0%
ACTAATCACATGCTTCTTTA+AGG + chr3_3:75303150-75303169 None:intergenic 30.0%
! GTATATGGTAGTTTTCTCTT+TGG - chr3_3:75303474-75303493 Msa0472870:CDS 30.0%
TAAGAATGCAACAGTTCATT+TGG + chr3_3:75303500-75303519 None:intergenic 30.0%
ATAGTTGTGTCTCAAACAAA+TGG - chr3_3:75303637-75303656 Msa0472870:five_prime_UTR 30.0%
! AACAAATGGAGAATTGATTC+AGG - chr3_3:75303651-75303670 Msa0472870:five_prime_UTR 30.0%
ACAAAATTAACACCAACCTA+TGG - chr3_3:75302393-75302412 Msa0472870:three_prime_UTR 30.0%
AAGTTCAAATTCATTCTAGG+TGG - chr3_3:75302509-75302528 Msa0472870:three_prime_UTR 30.0%
GCTCAAGAATCATACATAAA+TGG - chr3_3:75302537-75302556 Msa0472870:three_prime_UTR 30.0%
AATCATACATAAATGGGTCT+TGG - chr3_3:75302544-75302563 Msa0472870:three_prime_UTR 30.0%
ATCATACATAAATGGGTCTT+GGG - chr3_3:75302545-75302564 Msa0472870:three_prime_UTR 30.0%
! AGTTTTTCTTCAAAGTCATC+AGG - chr3_3:75302598-75302617 Msa0472870:three_prime_UTR 30.0%
ACTAATCACATGCTTCTTTA+AGG + chr3_3:75303150-75303169 None:intergenic 30.0%
! GTATATGGTAGTTTTCTCTT+TGG - chr3_3:75303474-75303493 Msa0472870:CDS 30.0%
TAAGAATGCAACAGTTCATT+TGG + chr3_3:75303500-75303519 None:intergenic 30.0%
ATAGTTGTGTCTCAAACAAA+TGG - chr3_3:75303637-75303656 Msa0472870:five_prime_UTR 30.0%
! AACAAATGGAGAATTGATTC+AGG - chr3_3:75303651-75303670 Msa0472870:five_prime_UTR 30.0%
TTCTTCCTTCTTCTCTTGTT+TGG + chr3_3:75302680-75302699 None:intergenic 35.0%
! CATTTGTTCTCCAGATTTTG+TGG + chr3_3:75302806-75302825 None:intergenic 35.0%
CTCTTAGAAGGAAAATTGGT+GGG - chr3_3:75302967-75302986 Msa0472870:intron 35.0%
GATGGAGAATATGTTGAAGA+GGG - chr3_3:75303234-75303253 Msa0472870:intron 35.0%
AGAATATGTTGAAGAGGGTT+GGG - chr3_3:75303239-75303258 Msa0472870:intron 35.0%
TTCTCTTTATGACCATGACA+TGG - chr3_3:75303390-75303409 Msa0472870:CDS 35.0%
! TCTTGTCTGGTAGACTTTTT+AGG - chr3_3:75303554-75303573 Msa0472870:CDS 35.0%
! CTTGTCTGGTAGACTTTTTA+GGG - chr3_3:75303555-75303574 Msa0472870:CDS 35.0%
!!! GTGTTTTGTTTTGAACCCAT+TGG - chr3_3:75303577-75303596 Msa0472870:exon 35.0%
!!! TTTTGTTTTGAACCCATTGG+TGG - chr3_3:75303580-75303599 Msa0472870:exon 35.0%
AAAATCACCTAATGGCCAAA+GGG + chr3_3:75303611-75303630 None:intergenic 35.0%
TAAAATCACCTAATGGCCAA+AGG + chr3_3:75303612-75303631 None:intergenic 35.0%
TTCTTCCTTCTTCTCTTGTT+TGG + chr3_3:75302680-75302699 None:intergenic 35.0%
! CATTTGTTCTCCAGATTTTG+TGG + chr3_3:75302806-75302825 None:intergenic 35.0%
CTCTTAGAAGGAAAATTGGT+GGG - chr3_3:75302967-75302986 Msa0472870:intron 35.0%
GATGGAGAATATGTTGAAGA+GGG - chr3_3:75303234-75303253 Msa0472870:intron 35.0%
AGAATATGTTGAAGAGGGTT+GGG - chr3_3:75303239-75303258 Msa0472870:intron 35.0%
TTCTCTTTATGACCATGACA+TGG - chr3_3:75303390-75303409 Msa0472870:CDS 35.0%
! TCTTGTCTGGTAGACTTTTT+AGG - chr3_3:75303554-75303573 Msa0472870:CDS 35.0%
! CTTGTCTGGTAGACTTTTTA+GGG - chr3_3:75303555-75303574 Msa0472870:CDS 35.0%
!!! GTGTTTTGTTTTGAACCCAT+TGG - chr3_3:75303577-75303596 Msa0472870:exon 35.0%
!!! TTTTGTTTTGAACCCATTGG+TGG - chr3_3:75303580-75303599 Msa0472870:exon 35.0%
AAAATCACCTAATGGCCAAA+GGG + chr3_3:75303611-75303630 None:intergenic 35.0%
TAAAATCACCTAATGGCCAA+AGG + chr3_3:75303612-75303631 None:intergenic 35.0%
! GGTTAACATTGTGGACTATG+TGG + chr3_3:75302343-75302362 None:intergenic 40.0%
! CAACTTGGTGGTTAACATTG+TGG + chr3_3:75302352-75302371 None:intergenic 40.0%
TTCAGCCAAACAAGAGAAGA+AGG - chr3_3:75302672-75302691 Msa0472870:three_prime_UTR 40.0%
AGATGCTCAGCTTATACAAG+AGG - chr3_3:75302771-75302790 Msa0472870:CDS 40.0%
AATCTGGAGAACAAATGAGC+AGG - chr3_3:75302809-75302828 Msa0472870:CDS 40.0%
ATCTGGAGAACAAATGAGCA+GGG - chr3_3:75302810-75302829 Msa0472870:CDS 40.0%
GGAGCTCTTAGAAGGAAAAT+TGG - chr3_3:75302963-75302982 Msa0472870:intron 40.0%
GCTCTTAGAAGGAAAATTGG+TGG - chr3_3:75302966-75302985 Msa0472870:intron 40.0%
GAAAATTGGTGGGACTTACA+AGG - chr3_3:75302977-75302996 Msa0472870:intron 40.0%
! AATCTTGTTGTACTGAGCAG+TGG - chr3_3:75303212-75303231 Msa0472870:intron 40.0%
GGATGGAGAATATGTTGAAG+AGG - chr3_3:75303233-75303252 Msa0472870:intron 40.0%
GAGAATATGTTGAAGAGGGT+TGG - chr3_3:75303238-75303257 Msa0472870:intron 40.0%
TTGGGTAGACAAAACATGCA+AGG - chr3_3:75303257-75303276 Msa0472870:intron 40.0%
AACATGCAAGGTGTGCAAAA+AGG - chr3_3:75303269-75303288 Msa0472870:intron 40.0%
TGGTCATAAAGAGAAGAGTC+TGG + chr3_3:75303385-75303404 None:intergenic 40.0%
ACCATGACATGGTATTGTAG+TGG - chr3_3:75303401-75303420 Msa0472870:CDS 40.0%
TCCACTACAATACCATGTCA+TGG + chr3_3:75303405-75303424 None:intergenic 40.0%
! GGTTAACATTGTGGACTATG+TGG + chr3_3:75302343-75302362 None:intergenic 40.0%
! CAACTTGGTGGTTAACATTG+TGG + chr3_3:75302352-75302371 None:intergenic 40.0%
TTCAGCCAAACAAGAGAAGA+AGG - chr3_3:75302672-75302691 Msa0472870:three_prime_UTR 40.0%
AGATGCTCAGCTTATACAAG+AGG - chr3_3:75302771-75302790 Msa0472870:CDS 40.0%
AATCTGGAGAACAAATGAGC+AGG - chr3_3:75302809-75302828 Msa0472870:CDS 40.0%
ATCTGGAGAACAAATGAGCA+GGG - chr3_3:75302810-75302829 Msa0472870:CDS 40.0%
GGAGCTCTTAGAAGGAAAAT+TGG - chr3_3:75302963-75302982 Msa0472870:intron 40.0%
GCTCTTAGAAGGAAAATTGG+TGG - chr3_3:75302966-75302985 Msa0472870:intron 40.0%
GAAAATTGGTGGGACTTACA+AGG - chr3_3:75302977-75302996 Msa0472870:intron 40.0%
! AATCTTGTTGTACTGAGCAG+TGG - chr3_3:75303212-75303231 Msa0472870:intron 40.0%
GGATGGAGAATATGTTGAAG+AGG - chr3_3:75303233-75303252 Msa0472870:intron 40.0%
GAGAATATGTTGAAGAGGGT+TGG - chr3_3:75303238-75303257 Msa0472870:intron 40.0%
TTGGGTAGACAAAACATGCA+AGG - chr3_3:75303257-75303276 Msa0472870:intron 40.0%
AACATGCAAGGTGTGCAAAA+AGG - chr3_3:75303269-75303288 Msa0472870:intron 40.0%
TGGTCATAAAGAGAAGAGTC+TGG + chr3_3:75303385-75303404 None:intergenic 40.0%
ACCATGACATGGTATTGTAG+TGG - chr3_3:75303401-75303420 Msa0472870:CDS 40.0%
TCCACTACAATACCATGTCA+TGG + chr3_3:75303405-75303424 None:intergenic 40.0%
GTTAACCACCAAGTTGTGAG+TGG - chr3_3:75302356-75302375 Msa0472870:three_prime_UTR 45.0%
ATCAAATCGCAGCCATAGGT+TGG + chr3_3:75302408-75302427 None:intergenic 45.0%
GTATAATAAGGAGGGGTCAG+TGG + chr3_3:75302577-75302596 None:intergenic 45.0%
TGAGCATCTTGTGCAGATCT+TGG + chr3_3:75302760-75302779 None:intergenic 45.0%
GCTAGAGAAGCCACAAAATC+TGG - chr3_3:75302793-75302812 Msa0472870:CDS 45.0%
AGAACAAATGAGCAGGGAAC+AGG - chr3_3:75302816-75302835 Msa0472870:CDS 45.0%
TGCAGTATGGAGCTCTTAGA+AGG - chr3_3:75302955-75302974 Msa0472870:intron 45.0%
TTGTTGTACTGAGCAGTGGA+TGG - chr3_3:75303216-75303235 Msa0472870:intron 45.0%
GTGTGCAAAAAGGACACCAA+GGG - chr3_3:75303279-75303298 Msa0472870:intron 45.0%
TCATGTAGCATGTGCAGAGA+AGG - chr3_3:75303338-75303357 Msa0472870:CDS 45.0%
TGTGCAGAGAAGGCAAAATC+TGG - chr3_3:75303348-75303367 Msa0472870:CDS 45.0%
CAAAGGGAACTTCCACCAAT+GGG + chr3_3:75303595-75303614 None:intergenic 45.0%
GTTAACCACCAAGTTGTGAG+TGG - chr3_3:75302356-75302375 Msa0472870:three_prime_UTR 45.0%
ATCAAATCGCAGCCATAGGT+TGG + chr3_3:75302408-75302427 None:intergenic 45.0%
GTATAATAAGGAGGGGTCAG+TGG + chr3_3:75302577-75302596 None:intergenic 45.0%
TGAGCATCTTGTGCAGATCT+TGG + chr3_3:75302760-75302779 None:intergenic 45.0%
GCTAGAGAAGCCACAAAATC+TGG - chr3_3:75302793-75302812 Msa0472870:CDS 45.0%
AGAACAAATGAGCAGGGAAC+AGG - chr3_3:75302816-75302835 Msa0472870:CDS 45.0%
TGCAGTATGGAGCTCTTAGA+AGG - chr3_3:75302955-75302974 Msa0472870:intron 45.0%
TTGTTGTACTGAGCAGTGGA+TGG - chr3_3:75303216-75303235 Msa0472870:intron 45.0%
GTGTGCAAAAAGGACACCAA+GGG - chr3_3:75303279-75303298 Msa0472870:intron 45.0%
TCATGTAGCATGTGCAGAGA+AGG - chr3_3:75303338-75303357 Msa0472870:CDS 45.0%
TGTGCAGAGAAGGCAAAATC+TGG - chr3_3:75303348-75303367 Msa0472870:CDS 45.0%
CAAAGGGAACTTCCACCAAT+GGG + chr3_3:75303595-75303614 None:intergenic 45.0%
!! TTACAAAAATATAAAAATTA+AGG + chr3_3:75302931-75302950 None:intergenic 5.0%
!! TTACAAAAATATAAAAATTA+AGG + chr3_3:75302931-75302950 None:intergenic 5.0%
! GTGGACTATGTGGCACCTTA+GGG + chr3_3:75302333-75302352 None:intergenic 50.0%
! TGTGGACTATGTGGCACCTT+AGG + chr3_3:75302334-75302353 None:intergenic 50.0%
TGTTGCCACTCACAACTTGG+TGG + chr3_3:75302364-75302383 None:intergenic 50.0%
CACTGTTGCCACTCACAACT+TGG + chr3_3:75302367-75302386 None:intergenic 50.0%
GGTGTGCAAAAAGGACACCA+AGG - chr3_3:75303278-75303297 Msa0472870:intron 50.0%
CACTTGTCTTGCTTCACCCT+TGG + chr3_3:75303298-75303317 None:intergenic 50.0%
CAAGGGTGAAGCAAGACAAG+TGG - chr3_3:75303296-75303315 Msa0472870:intron 50.0%
GCAAGACAAGTGGACAAGCT+TGG - chr3_3:75303306-75303325 Msa0472870:intron 50.0%
CCAAAGGGAACTTCCACCAA+TGG + chr3_3:75303596-75303615 None:intergenic 50.0%
CCATTGGTGGAAGTTCCCTT+TGG - chr3_3:75303593-75303612 Msa0472870:exon 50.0%
GGAAGTTCCCTTTGGCCATT+AGG - chr3_3:75303601-75303620 Msa0472870:five_prime_UTR 50.0%
! GTGGACTATGTGGCACCTTA+GGG + chr3_3:75302333-75302352 None:intergenic 50.0%
! TGTGGACTATGTGGCACCTT+AGG + chr3_3:75302334-75302353 None:intergenic 50.0%
TGTTGCCACTCACAACTTGG+TGG + chr3_3:75302364-75302383 None:intergenic 50.0%
CACTGTTGCCACTCACAACT+TGG + chr3_3:75302367-75302386 None:intergenic 50.0%
GGTGTGCAAAAAGGACACCA+AGG - chr3_3:75303278-75303297 Msa0472870:intron 50.0%
CACTTGTCTTGCTTCACCCT+TGG + chr3_3:75303298-75303317 None:intergenic 50.0%
CAAGGGTGAAGCAAGACAAG+TGG - chr3_3:75303296-75303315 Msa0472870:intron 50.0%
GCAAGACAAGTGGACAAGCT+TGG - chr3_3:75303306-75303325 Msa0472870:intron 50.0%
CCAAAGGGAACTTCCACCAA+TGG + chr3_3:75303596-75303615 None:intergenic 50.0%
CCATTGGTGGAAGTTCCCTT+TGG - chr3_3:75303593-75303612 Msa0472870:exon 50.0%
GGAAGTTCCCTTTGGCCATT+AGG - chr3_3:75303601-75303620 Msa0472870:five_prime_UTR 50.0%
TGTGAGTGGCAACAGTGCTG+TGG - chr3_3:75302370-75302389 Msa0472870:three_prime_UTR 55.0%
GGGCATCAAATCGCAGCCAT+AGG + chr3_3:75302412-75302431 None:intergenic 55.0%
TGTGAGTGGCAACAGTGCTG+TGG - chr3_3:75302370-75302389 Msa0472870:three_prime_UTR 55.0%
GGGCATCAAATCGCAGCCAT+AGG + chr3_3:75302412-75302431 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 75302330 75303820 75302330 ID=Msa0472870;Name=Msa0472870
chr3_3 mRNA 75302330 75303820 75302330 ID=Msa0472870-mRNA-1;Parent=Msa0472870;Name=Msa0472870-mRNA-1;_AED=0.01;_eAED=0.01;_QI=226|1|1|1|1|1|3|419|171
chr3_3 exon 75302330 75302918 75302330 ID=Msa0472870-mRNA-1:exon:19519;Parent=Msa0472870-mRNA-1
chr3_3 exon 75303127 75303190 75303127 ID=Msa0472870-mRNA-1:exon:19518;Parent=Msa0472870-mRNA-1
chr3_3 exon 75303313 75303820 75303313 ID=Msa0472870-mRNA-1:exon:19517;Parent=Msa0472870-mRNA-1
chr3_3 five_prime_UTR 75303595 75303820 75303595 ID=Msa0472870-mRNA-1:five_prime_utr;Parent=Msa0472870-mRNA-1
chr3_3 CDS 75303313 75303594 75303313 ID=Msa0472870-mRNA-1:cds;Parent=Msa0472870-mRNA-1
chr3_3 CDS 75303127 75303190 75303127 ID=Msa0472870-mRNA-1:cds;Parent=Msa0472870-mRNA-1
chr3_3 CDS 75302749 75302918 75302749 ID=Msa0472870-mRNA-1:cds;Parent=Msa0472870-mRNA-1
chr3_3 three_prime_UTR 75302330 75302748 75302330 ID=Msa0472870-mRNA-1:three_prime_utr;Parent=Msa0472870-mRNA-1
Gene Sequence

>Msa0472870

ATGGGTCTTGGGACTTTGCCACTGACCCCTCCTTATTATACAAGTTTTTCTTCAAAGTCATCAGGACTTGTACATAAAAATACTAATAATTGCAATAGAAGCAAAAAATTCATAGTTTCAGCCAAACAAGAGAAGAAGGAAGAAGATAAGAATAAGCAATCTTTCTTTACTAGTGTAACTGATGCTCTTGATTTTGCTCAACCAAGATCTGCACAAGATGCTCAGCTTATACAAGAGGCTAGAGAAGCCACAAAATCTGGAGAACAAATGAGCAGGGAACAGTATGGAGCTCTTAGAAGGAAAATTGGTGGGACTTACAAGGATTTTTTCAAATCTTATGTTGAAGTGGATGGAGAATATGTTGAAGAGGGTTGGGTAGACAAAACATGCAAGGTGTGCAAAAAGGACACCAAGGGTGAAGCAAGACAAGTGGACAAGCTTGGAAGATATGTTCATGTAGCATGTGCAGAGAAGGCAAAATCTGGAAACTTCTTTACCAGACTCTTCTCTTTATGA

Protein sequence

>Msa0472870

MGLGTLPLTPPYYTSFSSKSSGLVHKNTNNCNRSKKFIVSAKQEKKEEDKNKQSFFTSVTDALDFAQPRSAQDAQLIQEAREATKSGEQMSREQYGALRRKIGGTYKDFFKSYVEVDGEYVEEGWVDKTCKVCKKDTKGEARQVDKLGRYVHVACAEKAKSGNFFTRLFSL*