AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1454940


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1454940 MtrunA17_Chr3g0128821 98.830 171 2 0 1 171 1 171 2.64e-126 352
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1454940 AT3G56290.1 61.494 174 61 2 1 170 1 172 8.82e-71 211

Find 61 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTCAAGAATCATACATAAA+TGG 0.180528 tig0035523:+20105 Msa1454940:exon
AAACGGAAACTATAATTCTT+TGG 0.229221 tig0035523:+21356 Msa1454940:three_prime_UTR
AATCATACATAAATGGGTTT+TGG 0.236267 tig0035523:+20112 Msa1454940:exon
TTCTTCCTTCTTCTCTTGTT+TGG 0.250102 tig0035523:-20245 Msa1454940:intergenic
ACAAAGTTCAAATTCATTCT+AGG 0.289101 tig0035523:+20074 Msa1454940:five_prime_UTR
GCAAGTTCCCTTTGGCCATT+AGG 0.300224 tig0035523:+21170 Msa1454940:three_prime_UTR
AACAAATGGAGAATTGATTC+AGG 0.315306 tig0035523:+21220 Msa1454940:three_prime_UTR
TGTGGACTATGTGGCACCTT+AGG 0.339207 tig0035523:-19899 Msa1454940:intergenic
TAAGAATGCAACAGTTCATT+TGG 0.340491 tig0035523:-21066 Msa1454940:intergenic
TTTAGTAGAAGCAAAATTGT+AGG 0.344583 tig0035523:-21315 Msa1454940:intergenic
AACATGCAAGGTGTGCAAAA+AGG 0.352645 tig0035523:+20837 Msa1454940:CDS
AACGGAAACTATAATTCTTT+GGG 0.352846 tig0035523:+21357 Msa1454940:three_prime_UTR
GCTAGAGAAGCAACAAAATC+TGG 0.361301 tig0035523:+20361 Msa1454940:CDS
CACTTGTCTTGCTTCACCCT+TGG 0.361736 tig0035523:-20863 Msa1454940:intergenic
CTCAAGAATCATACATAAAT+GGG 0.370615 tig0035523:+20106 Msa1454940:exon
CTTTATCATTATATCTTGTC+TGG 0.378103 tig0035523:+21110 Msa1454940:three_prime_UTR
CAGACAAGATATAATGATAA+AGG 0.383938 tig0035523:-21109 Msa1454940:intergenic
TGTGCAGAGAAGGCAAAATC+TGG 0.391867 tig0035523:+20916 Msa1454940:CDS
GGAGCTCTTAGAAGGAAAAT+TGG 0.394746 tig0035523:+20531 Msa1454940:CDS
GAGAATATGTTGAAGAGGGT+TGG 0.421247 tig0035523:+20806 Msa1454940:CDS
ATAGTTGTGTCTCAAACAAA+TGG 0.426309 tig0035523:+21206 Msa1454940:three_prime_UTR
TGAGCATCTTGTGCAGATCT+TGG 0.428742 tig0035523:-20325 Msa1454940:intergenic
CCATTGGTGCAAGTTCCCTT+TGG 0.433015 tig0035523:+21162 Msa1454940:three_prime_UTR
AGAATATGTTGAAGAGGGTT+GGG 0.437524 tig0035523:+20807 Msa1454940:CDS
CACTGTTGCCACTCACAACT+TGG 0.444238 tig0035523:-19932 Msa1454940:intergenic
TGCAGTATGGAGCTCTTAGA+AGG 0.445617 tig0035523:+20523 Msa1454940:intron
GTGGACTATGTGGCACCTTA+GGG 0.458509 tig0035523:-19898 Msa1454940:intergenic
TTCAGCCAAACAAGAGAAGA+AGG 0.459242 tig0035523:+20240 Msa1454940:CDS
ATAAAATTAAAATCACCTAA+TGG 0.470916 tig0035523:-21185 Msa1454940:intergenic
CCAAAGGGAACTTGCACCAA+TGG 0.486455 tig0035523:-21162 Msa1454940:intergenic
AGAACAAATGAGCAGGGAAC+AGG 0.497325 tig0035523:+20384 Msa1454940:CDS
GAAAATTGGTGGGACTTACA+AGG 0.499480 tig0035523:+20545 Msa1454940:CDS
GCAAGACAAGTGGACAAGCT+TGG 0.505588 tig0035523:+20874 Msa1454940:CDS
GGGCATCAAATTGTAGCCAC+AGG 0.511147 tig0035523:-19977 Msa1454940:intergenic
AATCTGGAGAACAAATGAGC+AGG 0.519508 tig0035523:+20377 Msa1454940:CDS
CAAAGGGAACTTGCACCAAT+GGG 0.522049 tig0035523:-21161 Msa1454940:intergenic
AAAATCACCTAATGGCCAAA+GGG 0.529684 tig0035523:-21177 Msa1454940:intergenic
TGTTGCCACTCACAACTTGG+TGG 0.530474 tig0035523:-19929 Msa1454940:intergenic
CTCTTAGAAGGAAAATTGGT+GGG 0.533115 tig0035523:+20535 Msa1454940:CDS
TGGTCATAAAGAGAAGAGTC+TGG 0.537908 tig0035523:-20950 Msa1454940:intergenic
GGATGGAGAATATGTTGAAG+AGG 0.544093 tig0035523:+20801 Msa1454940:CDS
CAACTTGGTGGTTAACATTG+TGG 0.549129 tig0035523:-19917 Msa1454940:intergenic
TCATGTAGCATGTGCAGAGA+AGG 0.566077 tig0035523:+20906 Msa1454940:CDS
ATCAAATTGTAGCCACAGGT+TGG 0.571562 tig0035523:-19973 Msa1454940:intergenic
TAAAATCACCTAATGGCCAA+AGG 0.580336 tig0035523:-21178 Msa1454940:intergenic
ATCTGGAGAACAAATGAGCA+GGG 0.583865 tig0035523:+20378 Msa1454940:CDS
GTATAATAAGGAGGGGTCAG+TGG 0.591399 tig0035523:-20142 Msa1454940:intergenic
AGATGCTCAGCTTATACAAG+AGG 0.596458 tig0035523:+20339 Msa1454940:CDS
TCCACTACAATACCATGTCA+TGG 0.604222 tig0035523:-20970 Msa1454940:intergenic
GATGGAGAATATGTTGAAGA+GGG 0.605246 tig0035523:+20802 Msa1454940:CDS
GCTCTTAGAAGGAAAATTGG+TGG 0.606049 tig0035523:+20534 Msa1454940:CDS
AAAACTTGTATAATAAGGAG+GGG 0.613562 tig0035523:-20149 Msa1454940:intergenic
CAAGGGTGAAGCAAGACAAG+TGG 0.622923 tig0035523:+20864 Msa1454940:CDS
GGTTAACATTGTGGACTATG+TGG 0.624904 tig0035523:-19908 Msa1454940:intergenic
ACCATGACATGGTATTGTAG+TGG 0.643236 tig0035523:+20969 Msa1454940:exon
TTCTCTTTATGACCATGACA+TGG 0.643568 tig0035523:+20958 Msa1454940:exon
GTTAACCACCAAGTTGTGAG+TGG 0.647087 tig0035523:+19924 Msa1454940:five_prime_UTR
TTGGGTAGACAAAACATGCA+AGG 0.652458 tig0035523:+20825 Msa1454940:CDS
TGTGAGTGGCAACAGTGCTG+TGG 0.655065 tig0035523:+19938 Msa1454940:five_prime_UTR
AAGTTCAAATTCATTCTAGG+TGG 0.670611 tig0035523:+20077 Msa1454940:five_prime_UTR
ACAAAATTAACACCAACCTG+TGG 0.731920 tig0035523:+19961 Msa1454940:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATCCAATTTAAAAAAATT+AGG - tig0035523:21284-21303 Msa1454940:intergenic 10.0%
!! TAATCCAATTTAAAAAAATT+AGG - tig0035523:21284-21303 Msa1454940:intergenic 10.0%
!! TCAATTAATTTCATTTCTTA+TGG - tig0035523:20641-20660 Msa1454940:intergenic 15.0%
!! ATAAGAAAATGAAAAATGTT+GGG - tig0035523:20667-20686 Msa1454940:intergenic 15.0%
!! AATAAGAAAATGAAAAATGT+TGG - tig0035523:20668-20687 Msa1454940:intergenic 15.0%
!! TAGTTGAATTATATATTGTT+TGG + tig0035523:20734-20753 Msa1454940:intron 15.0%
!! AAGGAAAATAAAAATTTGTA+TGG - tig0035523:21093-21112 Msa1454940:intergenic 15.0%
!! ATAAAATTAAAATCACCTAA+TGG - tig0035523:21188-21207 Msa1454940:intergenic 15.0%
!!! TTGTCCTAATTTTTTTAAAT+TGG + tig0035523:21277-21296 Msa1454940:three_prime_UTR 15.0%
!! TCAATTAATTTCATTTCTTA+TGG - tig0035523:20641-20660 Msa1454940:intergenic 15.0%
!! ATAAGAAAATGAAAAATGTT+GGG - tig0035523:20667-20686 Msa1454940:intergenic 15.0%
!! AATAAGAAAATGAAAAATGT+TGG - tig0035523:20668-20687 Msa1454940:intergenic 15.0%
!! TAGTTGAATTATATATTGTT+TGG + tig0035523:20734-20753 Msa1454940:intron 15.0%
!! AAGGAAAATAAAAATTTGTA+TGG - tig0035523:21093-21112 Msa1454940:intergenic 15.0%
!! ATAAAATTAAAATCACCTAA+TGG - tig0035523:21188-21207 Msa1454940:intergenic 15.0%
!!! TTGTCCTAATTTTTTTAAAT+TGG + tig0035523:21277-21296 Msa1454940:three_prime_UTR 15.0%
!! AAAAACTTGTATAATAAGGA+GGG - tig0035523:20153-20172 Msa1454940:intergenic 20.0%
!! GAAGAAAAACTTGTATAATA+AGG - tig0035523:20157-20176 Msa1454940:intergenic 20.0%
!!! TTTTTGTAAATAATGCAGTA+TGG + tig0035523:20510-20529 Msa1454940:intron 20.0%
!!! TTTTTCAAATCTTATGTTGA+AGG + tig0035523:20570-20589 Msa1454940:CDS 20.0%
!!! ATCAGAATTTTAATCTGAAA+CGG + tig0035523:21339-21358 Msa1454940:three_prime_UTR 20.0%
!! AAAAACTTGTATAATAAGGA+GGG - tig0035523:20153-20172 Msa1454940:intergenic 20.0%
!! GAAGAAAAACTTGTATAATA+AGG - tig0035523:20157-20176 Msa1454940:intergenic 20.0%
!!! TTTTTGTAAATAATGCAGTA+TGG + tig0035523:20510-20529 Msa1454940:intron 20.0%
!!! TTTTTCAAATCTTATGTTGA+AGG + tig0035523:20570-20589 Msa1454940:CDS 20.0%
!!! ATCAGAATTTTAATCTGAAA+CGG + tig0035523:21339-21358 Msa1454940:three_prime_UTR 20.0%
!! TTCATTCTTTTCAGTATTTG+GGG - tig0035523:20000-20019 Msa1454940:intergenic 25.0%
!! CTTCATTCTTTTCAGTATTT+GGG - tig0035523:20001-20020 Msa1454940:intergenic 25.0%
! ACAAAGTTCAAATTCATTCT+AGG + tig0035523:20074-20093 Msa1454940:five_prime_UTR 25.0%
! CTCAAGAATCATACATAAAT+GGG + tig0035523:20106-20125 Msa1454940:exon 25.0%
!!! AATCATACATAAATGGGTTT+TGG + tig0035523:20112-20131 Msa1454940:exon 25.0%
!!! ATCATACATAAATGGGTTTT+GGG + tig0035523:20113-20132 Msa1454940:exon 25.0%
! AAAACTTGTATAATAAGGAG+GGG - tig0035523:20152-20171 Msa1454940:intergenic 25.0%
! GAAAAACTTGTATAATAAGG+AGG - tig0035523:20154-20173 Msa1454940:intergenic 25.0%
!! GTATATAGTAGTTTTCTCTT+TGG + tig0035523:21043-21062 Msa1454940:three_prime_UTR 25.0%
! CAGACAAGATATAATGATAA+AGG - tig0035523:21112-21131 Msa1454940:intergenic 25.0%
! CTTTATCATTATATCTTGTC+TGG + tig0035523:21110-21129 Msa1454940:three_prime_UTR 25.0%
! TTTAGTAGAAGCAAAATTGT+AGG - tig0035523:21318-21337 Msa1454940:intergenic 25.0%
! AAACGGAAACTATAATTCTT+TGG + tig0035523:21356-21375 Msa1454940:three_prime_UTR 25.0%
! AACGGAAACTATAATTCTTT+GGG + tig0035523:21357-21376 Msa1454940:three_prime_UTR 25.0%
!! TTCATTCTTTTCAGTATTTG+GGG - tig0035523:20000-20019 Msa1454940:intergenic 25.0%
!! CTTCATTCTTTTCAGTATTT+GGG - tig0035523:20001-20020 Msa1454940:intergenic 25.0%
! ACAAAGTTCAAATTCATTCT+AGG + tig0035523:20074-20093 Msa1454940:five_prime_UTR 25.0%
! CTCAAGAATCATACATAAAT+GGG + tig0035523:20106-20125 Msa1454940:exon 25.0%
!!! AATCATACATAAATGGGTTT+TGG + tig0035523:20112-20131 Msa1454940:exon 25.0%
!!! ATCATACATAAATGGGTTTT+GGG + tig0035523:20113-20132 Msa1454940:exon 25.0%
! AAAACTTGTATAATAAGGAG+GGG - tig0035523:20152-20171 Msa1454940:intergenic 25.0%
! GAAAAACTTGTATAATAAGG+AGG - tig0035523:20154-20173 Msa1454940:intergenic 25.0%
!! GTATATAGTAGTTTTCTCTT+TGG + tig0035523:21043-21062 Msa1454940:three_prime_UTR 25.0%
! CAGACAAGATATAATGATAA+AGG - tig0035523:21112-21131 Msa1454940:intergenic 25.0%
! CTTTATCATTATATCTTGTC+TGG + tig0035523:21110-21129 Msa1454940:three_prime_UTR 25.0%
! TTTAGTAGAAGCAAAATTGT+AGG - tig0035523:21318-21337 Msa1454940:intergenic 25.0%
! AAACGGAAACTATAATTCTT+TGG + tig0035523:21356-21375 Msa1454940:three_prime_UTR 25.0%
! AACGGAAACTATAATTCTTT+GGG + tig0035523:21357-21376 Msa1454940:three_prime_UTR 25.0%
! GCTTCATTCTTTTCAGTATT+TGG - tig0035523:20002-20021 Msa1454940:intergenic 30.0%
AAGTTCAAATTCATTCTAGG+TGG + tig0035523:20077-20096 Msa1454940:five_prime_UTR 30.0%
GCTCAAGAATCATACATAAA+TGG + tig0035523:20105-20124 Msa1454940:exon 30.0%
! AGTTTTTCTTCAAAGTCATC+AGG + tig0035523:20166-20185 Msa1454940:CDS 30.0%
ACTAATCACATGCTTCTTTA+AGG - tig0035523:20718-20737 Msa1454940:intergenic 30.0%
TAAGAATGCAACAGTTCATT+TGG - tig0035523:21069-21088 Msa1454940:intergenic 30.0%
ATAGTTGTGTCTCAAACAAA+TGG + tig0035523:21206-21225 Msa1454940:three_prime_UTR 30.0%
! AACAAATGGAGAATTGATTC+AGG + tig0035523:21220-21239 Msa1454940:three_prime_UTR 30.0%
! GCTTCATTCTTTTCAGTATT+TGG - tig0035523:20002-20021 Msa1454940:intergenic 30.0%
AAGTTCAAATTCATTCTAGG+TGG + tig0035523:20077-20096 Msa1454940:five_prime_UTR 30.0%
GCTCAAGAATCATACATAAA+TGG + tig0035523:20105-20124 Msa1454940:exon 30.0%
! AGTTTTTCTTCAAAGTCATC+AGG + tig0035523:20166-20185 Msa1454940:CDS 30.0%
ACTAATCACATGCTTCTTTA+AGG - tig0035523:20718-20737 Msa1454940:intergenic 30.0%
TAAGAATGCAACAGTTCATT+TGG - tig0035523:21069-21088 Msa1454940:intergenic 30.0%
ATAGTTGTGTCTCAAACAAA+TGG + tig0035523:21206-21225 Msa1454940:three_prime_UTR 30.0%
! AACAAATGGAGAATTGATTC+AGG + tig0035523:21220-21239 Msa1454940:three_prime_UTR 30.0%
ACAAAATTAACACCAACCTG+TGG + tig0035523:19961-19980 Msa1454940:five_prime_UTR 35.0%
TTCTTCCTTCTTCTCTTGTT+TGG - tig0035523:20248-20267 Msa1454940:intergenic 35.0%
CTCTTAGAAGGAAAATTGGT+GGG + tig0035523:20535-20554 Msa1454940:CDS 35.0%
GATGGAGAATATGTTGAAGA+GGG + tig0035523:20802-20821 Msa1454940:CDS 35.0%
AGAATATGTTGAAGAGGGTT+GGG + tig0035523:20807-20826 Msa1454940:CDS 35.0%
TTCTCTTTATGACCATGACA+TGG + tig0035523:20958-20977 Msa1454940:exon 35.0%
! TCTTGTCTGGTAGACTTTTT+AGG + tig0035523:21123-21142 Msa1454940:three_prime_UTR 35.0%
! CTTGTCTGGTAGACTTTTTA+GGG + tig0035523:21124-21143 Msa1454940:three_prime_UTR 35.0%
AAAATCACCTAATGGCCAAA+GGG - tig0035523:21180-21199 Msa1454940:intergenic 35.0%
TAAAATCACCTAATGGCCAA+AGG - tig0035523:21181-21200 Msa1454940:intergenic 35.0%
ACAAAATTAACACCAACCTG+TGG + tig0035523:19961-19980 Msa1454940:five_prime_UTR 35.0%
TTCTTCCTTCTTCTCTTGTT+TGG - tig0035523:20248-20267 Msa1454940:intergenic 35.0%
CTCTTAGAAGGAAAATTGGT+GGG + tig0035523:20535-20554 Msa1454940:CDS 35.0%
GATGGAGAATATGTTGAAGA+GGG + tig0035523:20802-20821 Msa1454940:CDS 35.0%
AGAATATGTTGAAGAGGGTT+GGG + tig0035523:20807-20826 Msa1454940:CDS 35.0%
TTCTCTTTATGACCATGACA+TGG + tig0035523:20958-20977 Msa1454940:exon 35.0%
! TCTTGTCTGGTAGACTTTTT+AGG + tig0035523:21123-21142 Msa1454940:three_prime_UTR 35.0%
! CTTGTCTGGTAGACTTTTTA+GGG + tig0035523:21124-21143 Msa1454940:three_prime_UTR 35.0%
AAAATCACCTAATGGCCAAA+GGG - tig0035523:21180-21199 Msa1454940:intergenic 35.0%
TAAAATCACCTAATGGCCAA+AGG - tig0035523:21181-21200 Msa1454940:intergenic 35.0%
! GGTTAACATTGTGGACTATG+TGG - tig0035523:19911-19930 Msa1243900:intergenic 40.0%
! CAACTTGGTGGTTAACATTG+TGG - tig0035523:19920-19939 Msa1243900:intergenic 40.0%
ATCAAATTGTAGCCACAGGT+TGG - tig0035523:19976-19995 Msa1454940:intergenic 40.0%
TTCAGCCAAACAAGAGAAGA+AGG + tig0035523:20240-20259 Msa1454940:CDS 40.0%
AGATGCTCAGCTTATACAAG+AGG + tig0035523:20339-20358 Msa1454940:CDS 40.0%
GCTAGAGAAGCAACAAAATC+TGG + tig0035523:20361-20380 Msa1454940:CDS 40.0%
AATCTGGAGAACAAATGAGC+AGG + tig0035523:20377-20396 Msa1454940:CDS 40.0%
ATCTGGAGAACAAATGAGCA+GGG + tig0035523:20378-20397 Msa1454940:CDS 40.0%
GGAGCTCTTAGAAGGAAAAT+TGG + tig0035523:20531-20550 Msa1454940:CDS 40.0%
GCTCTTAGAAGGAAAATTGG+TGG + tig0035523:20534-20553 Msa1454940:CDS 40.0%
GAAAATTGGTGGGACTTACA+AGG + tig0035523:20545-20564 Msa1454940:CDS 40.0%
! AATCTTGTTGTACTGAGCAG+TGG + tig0035523:20780-20799 Msa1454940:intron 40.0%
GGATGGAGAATATGTTGAAG+AGG + tig0035523:20801-20820 Msa1454940:CDS 40.0%
GAGAATATGTTGAAGAGGGT+TGG + tig0035523:20806-20825 Msa1454940:CDS 40.0%
TTGGGTAGACAAAACATGCA+AGG + tig0035523:20825-20844 Msa1454940:CDS 40.0%
AACATGCAAGGTGTGCAAAA+AGG + tig0035523:20837-20856 Msa1454940:CDS 40.0%
TGGTCATAAAGAGAAGAGTC+TGG - tig0035523:20953-20972 Msa1454940:intergenic 40.0%
ACCATGACATGGTATTGTAG+TGG + tig0035523:20969-20988 Msa1454940:exon 40.0%
TCCACTACAATACCATGTCA+TGG - tig0035523:20973-20992 Msa1454940:intergenic 40.0%
! GGTTAACATTGTGGACTATG+TGG - tig0035523:19911-19930 Msa1454940:intergenic 40.0%
! CAACTTGGTGGTTAACATTG+TGG - tig0035523:19920-19939 Msa1454940:intergenic 40.0%
ATCAAATTGTAGCCACAGGT+TGG - tig0035523:19976-19995 Msa1454940:intergenic 40.0%
TTCAGCCAAACAAGAGAAGA+AGG + tig0035523:20240-20259 Msa1454940:CDS 40.0%
AGATGCTCAGCTTATACAAG+AGG + tig0035523:20339-20358 Msa1454940:CDS 40.0%
GCTAGAGAAGCAACAAAATC+TGG + tig0035523:20361-20380 Msa1454940:CDS 40.0%
AATCTGGAGAACAAATGAGC+AGG + tig0035523:20377-20396 Msa1454940:CDS 40.0%
ATCTGGAGAACAAATGAGCA+GGG + tig0035523:20378-20397 Msa1454940:CDS 40.0%
GGAGCTCTTAGAAGGAAAAT+TGG + tig0035523:20531-20550 Msa1454940:CDS 40.0%
GCTCTTAGAAGGAAAATTGG+TGG + tig0035523:20534-20553 Msa1454940:CDS 40.0%
GAAAATTGGTGGGACTTACA+AGG + tig0035523:20545-20564 Msa1454940:CDS 40.0%
! AATCTTGTTGTACTGAGCAG+TGG + tig0035523:20780-20799 Msa1454940:intron 40.0%
GGATGGAGAATATGTTGAAG+AGG + tig0035523:20801-20820 Msa1454940:CDS 40.0%
GAGAATATGTTGAAGAGGGT+TGG + tig0035523:20806-20825 Msa1454940:CDS 40.0%
TTGGGTAGACAAAACATGCA+AGG + tig0035523:20825-20844 Msa1454940:CDS 40.0%
AACATGCAAGGTGTGCAAAA+AGG + tig0035523:20837-20856 Msa1454940:CDS 40.0%
TGGTCATAAAGAGAAGAGTC+TGG - tig0035523:20953-20972 Msa1454940:intergenic 40.0%
ACCATGACATGGTATTGTAG+TGG + tig0035523:20969-20988 Msa1454940:exon 40.0%
TCCACTACAATACCATGTCA+TGG - tig0035523:20973-20992 Msa1454940:intergenic 40.0%
GTTAACCACCAAGTTGTGAG+TGG + tig0035523:19924-19943 Msa1454940:five_prime_UTR 45.0%
GTATAATAAGGAGGGGTCAG+TGG - tig0035523:20145-20164 Msa1454940:intergenic 45.0%
TGAGCATCTTGTGCAGATCT+TGG - tig0035523:20328-20347 Msa1454940:intergenic 45.0%
AGAACAAATGAGCAGGGAAC+AGG + tig0035523:20384-20403 Msa1454940:CDS 45.0%
TGCAGTATGGAGCTCTTAGA+AGG + tig0035523:20523-20542 Msa1454940:intron 45.0%
TTGTTGTACTGAGCAGTGGA+TGG + tig0035523:20784-20803 Msa1454940:intron 45.0%
GTGTGCAAAAAGGACACCAA+GGG + tig0035523:20847-20866 Msa1454940:CDS 45.0%
TCATGTAGCATGTGCAGAGA+AGG + tig0035523:20906-20925 Msa1454940:CDS 45.0%
TGTGCAGAGAAGGCAAAATC+TGG + tig0035523:20916-20935 Msa1454940:CDS 45.0%
!!! GCGTGTTGTTTTGAACCCAT+TGG + tig0035523:21146-21165 Msa1454940:three_prime_UTR 45.0%
CAAAGGGAACTTGCACCAAT+GGG - tig0035523:21164-21183 Msa1454940:intergenic 45.0%
GTTAACCACCAAGTTGTGAG+TGG + tig0035523:19924-19943 Msa1454940:five_prime_UTR 45.0%
GTATAATAAGGAGGGGTCAG+TGG - tig0035523:20145-20164 Msa1454940:intergenic 45.0%
TGAGCATCTTGTGCAGATCT+TGG - tig0035523:20328-20347 Msa1454940:intergenic 45.0%
AGAACAAATGAGCAGGGAAC+AGG + tig0035523:20384-20403 Msa1454940:CDS 45.0%
TGCAGTATGGAGCTCTTAGA+AGG + tig0035523:20523-20542 Msa1454940:intron 45.0%
TTGTTGTACTGAGCAGTGGA+TGG + tig0035523:20784-20803 Msa1454940:intron 45.0%
GTGTGCAAAAAGGACACCAA+GGG + tig0035523:20847-20866 Msa1454940:CDS 45.0%
TCATGTAGCATGTGCAGAGA+AGG + tig0035523:20906-20925 Msa1454940:CDS 45.0%
TGTGCAGAGAAGGCAAAATC+TGG + tig0035523:20916-20935 Msa1454940:CDS 45.0%
!!! GCGTGTTGTTTTGAACCCAT+TGG + tig0035523:21146-21165 Msa1454940:three_prime_UTR 45.0%
CAAAGGGAACTTGCACCAAT+GGG - tig0035523:21164-21183 Msa1454940:intergenic 45.0%
!! TTACAAAAATATAAAAATTA+AGG - tig0035523:20499-20518 Msa1454940:intergenic 5.0%
!! TTACAAAAATATAAAAATTA+AGG - tig0035523:20499-20518 Msa1454940:intergenic 5.0%
! GTGGACTATGTGGCACCTTA+GGG - tig0035523:19901-19920 Msa1243900:intergenic 50.0%
! TGTGGACTATGTGGCACCTT+AGG - tig0035523:19902-19921 Msa1243900:intergenic 50.0%
TGTTGCCACTCACAACTTGG+TGG - tig0035523:19932-19951 Msa1454940:intergenic 50.0%
CACTGTTGCCACTCACAACT+TGG - tig0035523:19935-19954 Msa1454940:intergenic 50.0%
GGGCATCAAATTGTAGCCAC+AGG - tig0035523:19980-19999 Msa1454940:intergenic 50.0%
GGTGTGCAAAAAGGACACCA+AGG + tig0035523:20846-20865 Msa1454940:CDS 50.0%
CACTTGTCTTGCTTCACCCT+TGG - tig0035523:20866-20885 Msa1454940:intergenic 50.0%
CAAGGGTGAAGCAAGACAAG+TGG + tig0035523:20864-20883 Msa1454940:CDS 50.0%
GCAAGACAAGTGGACAAGCT+TGG + tig0035523:20874-20893 Msa1454940:CDS 50.0%
CCAAAGGGAACTTGCACCAA+TGG - tig0035523:21165-21184 Msa1454940:intergenic 50.0%
CCATTGGTGCAAGTTCCCTT+TGG + tig0035523:21162-21181 Msa1454940:three_prime_UTR 50.0%
GCAAGTTCCCTTTGGCCATT+AGG + tig0035523:21170-21189 Msa1454940:three_prime_UTR 50.0%
! GTGGACTATGTGGCACCTTA+GGG - tig0035523:19901-19920 Msa1454940:intergenic 50.0%
! TGTGGACTATGTGGCACCTT+AGG - tig0035523:19902-19921 Msa1454940:intergenic 50.0%
TGTTGCCACTCACAACTTGG+TGG - tig0035523:19932-19951 Msa1454940:intergenic 50.0%
CACTGTTGCCACTCACAACT+TGG - tig0035523:19935-19954 Msa1454940:intergenic 50.0%
GGGCATCAAATTGTAGCCAC+AGG - tig0035523:19980-19999 Msa1454940:intergenic 50.0%
GGTGTGCAAAAAGGACACCA+AGG + tig0035523:20846-20865 Msa1454940:CDS 50.0%
CACTTGTCTTGCTTCACCCT+TGG - tig0035523:20866-20885 Msa1454940:intergenic 50.0%
CAAGGGTGAAGCAAGACAAG+TGG + tig0035523:20864-20883 Msa1454940:CDS 50.0%
GCAAGACAAGTGGACAAGCT+TGG + tig0035523:20874-20893 Msa1454940:CDS 50.0%
CCAAAGGGAACTTGCACCAA+TGG - tig0035523:21165-21184 Msa1454940:intergenic 50.0%
CCATTGGTGCAAGTTCCCTT+TGG + tig0035523:21162-21181 Msa1454940:three_prime_UTR 50.0%
GCAAGTTCCCTTTGGCCATT+AGG + tig0035523:21170-21189 Msa1454940:three_prime_UTR 50.0%
TGTGAGTGGCAACAGTGCTG+TGG + tig0035523:19938-19957 Msa1454940:five_prime_UTR 55.0%
TGTGAGTGGCAACAGTGCTG+TGG + tig0035523:19938-19957 Msa1454940:five_prime_UTR 55.0%
Chromosome Type Strat End Strand Name
tig0035523 gene 19898 21389 19898 ID=Msa1454940;Name=Msa1454940
tig0035523 mRNA 19898 21389 19898 ID=Msa1454940-mRNA-1;Parent=Msa1454940;Name=Msa1454940-mRNA-1;_AED=0.01;_eAED=0.01;_QI=226|1|1|1|1|1|3|420|171
tig0035523 exon 19898 20405 19898 ID=Msa1454940-mRNA-1:exon:20026;Parent=Msa1454940-mRNA-1
tig0035523 exon 20528 20591 20528 ID=Msa1454940-mRNA-1:exon:20027;Parent=Msa1454940-mRNA-1
tig0035523 exon 20800 21389 20800 ID=Msa1454940-mRNA-1:exon:20028;Parent=Msa1454940-mRNA-1
tig0035523 five_prime_UTR 19898 20123 19898 ID=Msa1454940-mRNA-1:five_prime_utr;Parent=Msa1454940-mRNA-1
tig0035523 CDS 20124 20405 20124 ID=Msa1454940-mRNA-1:cds;Parent=Msa1454940-mRNA-1
tig0035523 CDS 20528 20591 20528 ID=Msa1454940-mRNA-1:cds;Parent=Msa1454940-mRNA-1
tig0035523 CDS 20800 20969 20800 ID=Msa1454940-mRNA-1:cds;Parent=Msa1454940-mRNA-1
tig0035523 three_prime_UTR 20970 21389 20970 ID=Msa1454940-mRNA-1:three_prime_utr;Parent=Msa1454940-mRNA-1
Gene Sequence

>Msa1454940

ATGGGTTTTGGGACTTTGCCACTGACCCCTCCTTATTATACAAGTTTTTCTTCAAAGTCATCAGGACTTGTACATAAAAATACTAATAATTGCAATAGAAGCAAAAAATTCATAGTTTCAGCCAAACAAGAGAAGAAGGAAGAAGATAAGAATAAGCAATCTTTCTTTACTAGTGTAACTGATGCTCTTGATTTTGCTCAACCAAGATCTGCACAAGATGCTCAGCTTATACAAGAGGCTAGAGAAGCAACAAAATCTGGAGAACAAATGAGCAGGGAACAGTATGGAGCTCTTAGAAGGAAAATTGGTGGGACTTACAAGGATTTTTTCAAATCTTATGTTGAAGTGGATGGAGAATATGTTGAAGAGGGTTGGGTAGACAAAACATGCAAGGTGTGCAAAAAGGACACCAAGGGTGAAGCAAGACAAGTGGACAAGCTTGGAAGATATGTTCATGTAGCATGTGCAGAGAAGGCAAAATCTGGAAACTTCTTTACCAGACTCTTCTCTTTATGA

Protein sequence

>Msa1454940

MGFGTLPLTPPYYTSFSSKSSGLVHKNTNNCNRSKKFIVSAKQEKKEEDKNKQSFFTSVTDALDFAQPRSAQDAQLIQEAREATKSGEQMSREQYGALRRKIGGTYKDFFKSYVEVDGEYVEEGWVDKTCKVCKKDTKGEARQVDKLGRYVHVACAEKAKSGNFFTRLFSL*