AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1098570


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1098570 MtrunA17_Chr7g0219121 92.292 480 37 0 1 480 1 480 0.0 915
Msa1098570 MtrunA17_Chr7g0219101 67.909 483 102 3 1 480 1 433 0.0 651
Msa1098570 MtrunA17_Chr7g0219291 59.834 483 173 11 1 477 348 815 0.0 552
Msa1098570 MtrunA17_Chr7g0219291 49.068 322 138 9 147 465 18 316 3.21e-83 273
Msa1098570 MtrunA17_Chr7g0219241 58.125 480 186 10 6 480 7 476 0.0 545
Msa1098570 MtrunA17_Chr7g0219181 59.381 485 181 12 1 478 1 476 0.0 523
Msa1098570 MtrunA17_Chr7g0219211 56.463 294 118 5 5 294 6 293 2.79e-107 322
Msa1098570 MtrunA17_Chr6g0455361 40.574 488 248 14 1 477 1 457 3.50e-103 316
Msa1098570 MtrunA17_Chr6g0455341 42.358 458 231 12 25 477 31 460 3.75e-103 316
Msa1098570 MtrunA17_Chr6g0454761 39.836 487 259 11 1 480 1 460 1.35e-101 325
Msa1098570 MtrunA17_Chr6g0454761 39.158 475 264 10 4 477 492 942 1.16e-96 312
Msa1098570 MtrunA17_Chr7g0219331 39.592 490 253 16 2 477 91 551 1.30e-100 312
Msa1098570 MtrunA17_Chr7g0219301 39.709 481 249 14 9 476 5 457 3.24e-97 312
Msa1098570 MtrunA17_Chr7g0219301 32.463 268 162 7 212 477 631 881 2.93e-36 142
Msa1098570 MtrunA17_Chr7g0219301 29.749 279 165 8 23 283 532 797 3.60e-22 100
Msa1098570 MtrunA17_Chr6g0455351 36.605 489 234 14 1 477 1 425 5.21e-83 263
Msa1098570 MtrunA17_Chr7g0219191 61.395 215 77 4 19 232 10 219 1.40e-81 252
Msa1098570 MtrunA17_Chr3g0087901 34.845 485 273 15 8 477 8 464 4.72e-76 246
Msa1098570 MtrunA17_Chr7g0219251 68.156 179 50 5 1 178 1 173 1.32e-73 229
Msa1098570 MtrunA17_Chr2g0323511 32.114 492 279 14 11 477 21 482 2.41e-69 229
Msa1098570 MtrunA17_Chr7g0219881 32.510 486 265 16 8 468 5 452 9.21e-62 208
Msa1098570 MtrunA17_Chr2g0323471 31.410 468 272 14 26 477 43 477 3.93e-60 204
Msa1098570 MtrunA17_Chr3g0124341 30.879 489 292 15 9 477 10 472 5.32e-60 204
Msa1098570 MtrunA17_Chr7g0219221 59.873 157 62 1 322 477 2 158 8.66e-60 193
Msa1098570 MtrunA17_Chr2g0323421 29.691 485 296 12 8 477 55 509 1.85e-59 203
Msa1098570 MtrunA17_Chr7g0219201 53.158 190 86 3 293 480 17 205 5.65e-57 187
Msa1098570 MtrunA17_Chr2g0323501 29.828 466 284 13 28 477 37 475 6.15e-56 193
Msa1098570 MtrunA17_Chr2g0323481 31.473 448 271 12 41 477 39 461 4.77e-55 191
Msa1098570 MtrunA17_Chr8g0339641 30.655 473 279 16 26 475 24 470 5.16e-54 188
Msa1098570 MtrunA17_Chr3g0083761 29.278 485 274 16 6 462 3 446 1.26e-53 187
Msa1098570 MtrunA17_Chr7g0219351 38.298 235 123 8 76 305 14 231 2.57e-41 147
Msa1098570 MtrunA17_Chr6g0454741 39.286 196 103 6 51 246 2 181 1.23e-33 127
Msa1098570 MtrunA17_Chr3g0092011 31.624 234 135 6 7 229 3 222 2.31e-27 110
Msa1098570 MtrunA17_Chr7g0219341 36.424 151 92 3 329 477 2 150 7.55e-26 103
Msa1098570 MtrunA17_Chr4g0001861 25.000 440 256 19 8 429 3 386 2.81e-23 102
Msa1098570 MtrunA17_Chr3g0113181 24.893 466 267 18 8 439 12 428 2.77e-22 99.4
Msa1098570 MtrunA17_Chr7g0219311 32.215 149 95 3 313 460 2 145 2.91e-21 90.1
Msa1098570 MtrunA17_Chr2g0323441 36.517 178 94 8 11 178 7 175 3.52e-21 90.9
Msa1098570 MtrunA17_Chr4g0053091 26.728 434 244 17 19 439 22 394 8.38e-21 94.7
Msa1098570 MtrunA17_Chr3g0134041 24.336 452 282 16 28 466 30 434 9.93e-20 91.7
Msa1098570 MtrunA17_Chr6g0467861 23.636 495 299 20 7 467 46 495 1.86e-19 91.3
Msa1098570 MtrunA17_Chr8g0371821 23.632 402 235 17 50 429 32 383 3.92e-19 89.7
Msa1098570 MtrunA17_Chr2g0334001 23.110 463 280 21 31 475 27 431 5.03e-19 89.4
Msa1098570 MtrunA17_Chr2g0311401 23.353 334 208 13 153 475 5 301 2.87e-17 82.4
Msa1098570 MtrunA17_Chr3g0087401 23.799 437 268 19 64 474 51 448 1.38e-16 82.0
Msa1098570 MtrunA17_Chr7g0253541 24.297 391 226 13 67 429 60 408 3.47e-16 80.9
Msa1098570 MtrunA17_Chr8g0386141 25.771 454 237 18 3 429 2 382 4.93e-15 77.0
Msa1098570 MtrunA17_Chr4g0053111 23.284 408 226 16 62 439 57 407 5.02e-15 77.0
Msa1098570 MtrunA17_Chr4g0054081 24.823 423 254 17 26 428 28 406 8.08e-15 76.6
Msa1098570 MtrunA17_Chr3g0134061 23.222 478 300 19 8 461 5 439 3.46e-14 74.7
Msa1098570 MtrunA17_Chr8g0361771 23.516 438 243 15 17 429 15 385 3.73e-14 74.3
Msa1098570 MtrunA17_Chr7g0253501 23.922 464 295 20 36 477 30 457 5.56e-14 73.9
Msa1098570 MtrunA17_Chr2g0283361 21.133 459 290 14 8 456 2 398 9.06e-14 73.2
Msa1098570 MtrunA17_Chr4g0072041 21.366 454 296 15 41 475 47 458 1.41e-13 72.8
Msa1098570 MtrunA17_Chr3g0132001 25.694 288 170 11 67 351 66 312 2.70e-13 71.6
Msa1098570 MtrunA17_Chr4g0010121 23.312 459 275 19 19 460 61 459 3.06e-13 71.6
Msa1098570 MtrunA17_Chr8g0359251 24.000 425 264 15 25 439 26 401 1.75e-12 69.3
Msa1098570 MtrunA17_Chr8g0361781 23.929 397 233 17 60 442 53 394 4.56e-12 67.8
Msa1098570 MtrunA17_Chr4g0010311 23.596 445 268 17 17 442 14 405 4.72e-12 67.8
Msa1098570 MtrunA17_Chr4g0005941 21.946 483 334 14 10 466 8 473 9.16e-12 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1098570 AT3G29590.1 36.515 482 267 9 1 477 1 448 4.53e-91 285
Msa1098570 AT5G39050.1 37.759 482 270 14 5 477 7 467 4.67e-90 283
Msa1098570 AT3G29635.1 38.074 457 253 11 24 477 25 454 6.58e-89 279
Msa1098570 AT5G39080.1 37.083 480 274 13 1 474 1 458 2.49e-88 278
Msa1098570 AT5G39090.1 36.250 480 270 12 1 477 1 447 1.74e-86 273
Msa1098570 AT3G29670.1 37.161 479 260 14 8 477 3 449 7.60e-85 268
Msa1098570 AT5G61160.1 33.404 473 283 13 8 475 3 448 4.53e-75 243
Msa1098570 AT3G29680.1 35.849 477 264 14 4 473 2 443 1.57e-73 239
Msa1098570 AT1G03940.1 29.615 493 302 11 1 477 1 464 5.45e-63 212
Msa1098570 AT1G03495.1 30.458 371 217 12 1 359 1 342 2.88e-41 151
Msa1098570 AT5G23940.1 25.439 456 268 20 8 439 3 410 9.43e-22 98.2
Msa1098570 AT3G29720.1 34.247 219 103 10 99 303 10 201 3.10e-19 86.7
Msa1098570 AT2G19070.1 24.444 405 250 17 41 428 37 402 8.83e-19 89.0
Msa1098570 AT5G48930.1 23.799 437 265 18 8 429 3 386 2.29e-18 87.8
Msa1098570 AT3G50280.1 24.009 429 264 16 19 434 18 397 5.02e-18 86.7
Msa1098570 AT5G67150.1 24.065 428 276 11 16 434 13 400 5.96e-18 86.7
Msa1098570 AT3G29690.1 31.126 151 98 2 328 477 33 178 3.93e-16 77.0
Msa1098570 AT2G39980.1 23.636 495 322 16 1 467 1 467 1.08e-14 76.6
Msa1098570 AT5G07850.1 24.609 447 283 19 1 434 1 406 2.79e-14 75.5
Msa1098570 AT4G31910.1 22.409 357 232 9 44 389 46 368 6.62e-13 70.9
Msa1098570 AT3G47170.1 24.294 354 223 13 45 388 51 369 2.42e-12 69.3

Find 71 sgRNAs with CRISPR-Local

Find 196 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACATTGTTGTCTAAATATT+TGG 0.130040 7_3:-26194981 Msa1098570:CDS
GATTACTTCCCTACTCAAAA+AGG 0.196644 7_3:+26195534 None:intergenic
GTAGGGTGTGATTGTGAATT+TGG 0.209360 7_3:+26196009 None:intergenic
TTGAAAGGTGGTGTTGAATT+TGG 0.214452 7_3:-26194806 Msa1098570:CDS
GAGAGTGAAGATTTGAGTTT+TGG 0.216722 7_3:+26195964 None:intergenic
GATAATTGGTTTGCAGAATT+AGG 0.230849 7_3:+26196105 None:intergenic
ACAATTTCCGAAATAGATTT+CGG 0.252538 7_3:+26195129 None:intergenic
ACAAAAGTTGACAATTTCTT+TGG 0.263553 7_3:+26195277 None:intergenic
AACGAAACTCCGTCATCTTT+TGG 0.264453 7_3:+26195859 None:intergenic
GGAGTATATGAGATTGATTT+TGG 0.273264 7_3:-26194905 Msa1098570:CDS
AAGTGAGAGGAAGAGATAAT+TGG 0.284573 7_3:+26196091 None:intergenic
CGAACGGAATCCTTAACTTT+TGG 0.284718 7_3:+26195400 None:intergenic
TTCTTCAATATTGTTCCATT+TGG 0.285958 7_3:+26195321 None:intergenic
CAATTTCCGAAATAGATTTC+GGG 0.286056 7_3:+26195130 None:intergenic
CCGAAATAGATTTCGGGAAT+TGG 0.301386 7_3:+26195136 None:intergenic
TCTTCCTTGGTAAAGTCTTC+TGG 0.306022 7_3:+26195079 None:intergenic
CGAGCTCACACGTGAAGATT+TGG 0.321526 7_3:-26195368 Msa1098570:CDS
TGAAAGGTGGTGTTGAATTT+GGG 0.328871 7_3:-26194805 Msa1098570:CDS
CTATAGCCGGTAACATTGTT+TGG 0.330391 7_3:-26195918 Msa1098570:CDS
CCAATTCCCGAAATCTATTT+CGG 0.335034 7_3:-26195136 Msa1098570:CDS
GTTGAAGGAATTCAAGGAAT+AGG 0.342972 7_3:-26194950 Msa1098570:CDS
TCACTTTCTTAGACTTGAAT+TGG 0.344769 7_3:-26196074 Msa1098570:CDS
GTTGATAGAGGAATAACAAT+TGG 0.386783 7_3:-26194848 Msa1098570:CDS
ATCTCACTCTCAAAACCATT+TGG 0.401328 7_3:+26195505 None:intergenic
TAGAAGAAAATACGTTCAAC+TGG 0.403167 7_3:+26196039 None:intergenic
ACACATCATGCTGTTCTTGA+TGG 0.407163 7_3:-26195652 Msa1098570:CDS
ATTCAAGGAATAGGAGTTGC+AGG 0.408252 7_3:-26194941 Msa1098570:CDS
CAAACAATGTTACCGGCTAT+AGG 0.417276 7_3:+26195919 None:intergenic
AAACAATGTTACCGGCTATA+GGG 0.421018 7_3:+26195920 None:intergenic
TTTGGATTGAACTGGATGAT+TGG 0.424802 7_3:+26195877 None:intergenic
AGAAGGCCAAACAATGTTAC+CGG 0.429788 7_3:+26195912 None:intergenic
ACAAAAGTGTGTTGTCCAAA+TGG 0.432381 7_3:-26195336 Msa1098570:CDS
TAGGGTGTGATTGTGAATTT+GGG 0.451765 7_3:+26196010 None:intergenic
TTTGAGTAGGGAAGTAATCA+AGG 0.453618 7_3:-26195530 Msa1098570:CDS
GTTGCAGGGTCAACAAGGTT+TGG 0.454958 7_3:-26194926 Msa1098570:CDS
TATTTGGCTATGATTGTTGA+AGG 0.462013 7_3:-26194965 Msa1098570:CDS
ATGATTGTTGAAGGAATTCA+AGG 0.462061 7_3:-26194956 Msa1098570:CDS
AGAGTGAGATCATAAATAGT+TGG 0.463701 7_3:-26195492 Msa1098570:CDS
CGGCTATAGGGAGAAAGTAT+TGG 0.472914 7_3:+26195932 None:intergenic
AATCACCACTCCATCTTCCT+TGG 0.480258 7_3:+26195066 None:intergenic
GTGTGATTGTGAATTTGGGA+GGG 0.498440 7_3:+26196014 None:intergenic
GTTCTTGATAAGCACGTGAT+GGG 0.509399 7_3:-26194779 Msa1098570:CDS
TGTTCTTGATAAGCACGTGA+TGG 0.510983 7_3:-26194780 Msa1098570:CDS
GTGATTGTGAATTTGGGAGG+GGG 0.512685 7_3:+26196016 None:intergenic
GAAAGTAGAGATTTGAAAGG+TGG 0.519737 7_3:-26194818 Msa1098570:CDS
AAATGGAACAATATTGAAGA+AGG 0.523989 7_3:-26195319 Msa1098570:CDS
TTATGGAAGGCCTGCAAAAG+TGG 0.524298 7_3:-26194882 Msa1098570:CDS
TGTGATTGTGAATTTGGGAG+GGG 0.526202 7_3:+26196015 None:intergenic
GAAGTAATCAAGGATCCAAA+TGG 0.526584 7_3:-26195520 Msa1098570:CDS
AAATAGATTTCGGGAATTGG+TGG 0.534901 7_3:+26195139 None:intergenic
GAAGACTTTACCAAGGAAGA+TGG 0.540696 7_3:-26195076 Msa1098570:CDS
GAGACAACTTCAGTTGATAG+AGG 0.566864 7_3:-26194860 Msa1098570:CDS
AGTTTCCTTTGATAAAATTG+TGG 0.567981 7_3:-26195809 Msa1098570:CDS
CAATACTTTCTCCCTATAGC+CGG 0.569370 7_3:-26195931 Msa1098570:CDS
ACAGAAAGTAGAGATTTGAA+AGG 0.576880 7_3:-26194821 Msa1098570:CDS
CTATAGGGAGAAAGTATTGG+AGG 0.584990 7_3:+26195935 None:intergenic
GGTGTGATTGTGAATTTGGG+AGG 0.587405 7_3:+26196013 None:intergenic
TTCAAGTCTAAGAAAGTGAG+AGG 0.591765 7_3:+26196078 None:intergenic
GAATCTGTTGATTCTAAGTG+AGG 0.596592 7_3:+26195742 None:intergenic
TAGGAGTTGCAGGGTCAACA+AGG 0.619039 7_3:-26194931 Msa1098570:CDS
CGAGATAAAGAAGCTTCTTG+TGG 0.621141 7_3:+26195775 None:intergenic
CAGTTCAATCCAAAAGATGA+CGG 0.625889 7_3:-26195868 Msa1098570:CDS
CAACCATGTTCATCAAAGCA+TGG 0.631200 7_3:-26195621 Msa1098570:CDS
CTTTACCAAGGAAGATGGAG+TGG 0.638020 7_3:-26195071 Msa1098570:CDS
TATAGGGAGAAAGTATTGGA+GGG 0.638240 7_3:+26195936 None:intergenic
ATGATGTGTGCTTATTCCAA+TGG 0.647501 7_3:+26195666 None:intergenic
GAGCTCGAATGCGACTCGAA+CGG 0.653104 7_3:+26195384 None:intergenic
AGACCATGCTTTGATGAACA+TGG 0.653845 7_3:+26195618 None:intergenic
TTCAAGGAATAGGAGTTGCA+GGG 0.658447 7_3:-26194940 Msa1098570:CDS
AGAAGAAAATACGTTCAACT+GGG 0.676059 7_3:+26196040 None:intergenic
TGAGCCAGAAGACTTTACCA+AGG 0.738299 7_3:-26195083 Msa1098570:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CAAAAACAAAAATTTTGTTT+TGG - chr7_3:26195699-26195718 Msa1098570:CDS 15.0%
!! TTATAGCAAAATTAGAAAAA+TGG - chr7_3:26195863-26195882 Msa1098570:CDS 15.0%
!! AAAATTAGAAAAATGGATAA+GGG - chr7_3:26195870-26195889 Msa1098570:CDS 15.0%
!!! CAAAAACAAAAATTTTGTTT+TGG - chr7_3:26195699-26195718 Msa1098570:CDS 15.0%
!! TTATAGCAAAATTAGAAAAA+TGG - chr7_3:26195863-26195882 Msa1098570:CDS 15.0%
!! AAAATTAGAAAAATGGATAA+GGG - chr7_3:26195870-26195889 Msa1098570:CDS 15.0%
!!! TTTTTTTGAACCAAAAGTTA+AGG - chr7_3:26195482-26195501 Msa1098570:CDS 20.0%
!! CAAAATTAGAAAAATGGATA+AGG - chr7_3:26195869-26195888 Msa1098570:CDS 20.0%
!! TACATTGTTGTCTAAATATT+TGG - chr7_3:26195911-26195930 Msa1098570:CDS 20.0%
!!! TTTTTTTGAACCAAAAGTTA+AGG - chr7_3:26195482-26195501 Msa1098570:CDS 20.0%
!! CAAAATTAGAAAAATGGATA+AGG - chr7_3:26195869-26195888 Msa1098570:CDS 20.0%
!! TACATTGTTGTCTAAATATT+TGG - chr7_3:26195911-26195930 Msa1098570:CDS 20.0%
! AGTTTCCTTTGATAAAATTG+TGG - chr7_3:26195083-26195102 Msa1098570:CDS 25.0%
! TTCTTCAATATTGTTCCATT+TGG + chr7_3:26195574-26195593 None:intergenic 25.0%
! AAATGGAACAATATTGAAGA+AGG - chr7_3:26195573-26195592 Msa1098570:CDS 25.0%
! ACAAAAGTTGACAATTTCTT+TGG + chr7_3:26195618-26195637 None:intergenic 25.0%
! ACAATTTCCGAAATAGATTT+CGG + chr7_3:26195766-26195785 None:intergenic 25.0%
!!! TATGAGATTGATTTTGGTTA+TGG - chr7_3:26195993-26196012 Msa1098570:CDS 25.0%
!!! TTTCATACCATTTTTCATGA+AGG - chr7_3:26196140-26196159 Msa1098570:CDS 25.0%
!!! TTCATACCATTTTTCATGAA+GGG - chr7_3:26196141-26196160 Msa1098570:CDS 25.0%
! AGTTTCCTTTGATAAAATTG+TGG - chr7_3:26195083-26195102 Msa1098570:CDS 25.0%
! TTCTTCAATATTGTTCCATT+TGG + chr7_3:26195574-26195593 None:intergenic 25.0%
! AAATGGAACAATATTGAAGA+AGG - chr7_3:26195573-26195592 Msa1098570:CDS 25.0%
! ACAAAAGTTGACAATTTCTT+TGG + chr7_3:26195618-26195637 None:intergenic 25.0%
! ACAATTTCCGAAATAGATTT+CGG + chr7_3:26195766-26195785 None:intergenic 25.0%
!!! TATGAGATTGATTTTGGTTA+TGG - chr7_3:26195993-26196012 Msa1098570:CDS 25.0%
!!! TTTCATACCATTTTTCATGA+AGG - chr7_3:26196140-26196159 Msa1098570:CDS 25.0%
!!! TTCATACCATTTTTCATGAA+GGG - chr7_3:26196141-26196160 Msa1098570:CDS 25.0%
!! GATAATTGGTTTGCAGAATT+AGG + chr7_3:26194790-26194809 None:intergenic 30.0%
TCACTTTCTTAGACTTGAAT+TGG - chr7_3:26194818-26194837 Msa1098570:CDS 30.0%
AGAAGAAAATACGTTCAACT+GGG + chr7_3:26194855-26194874 None:intergenic 30.0%
TAGAAGAAAATACGTTCAAC+TGG + chr7_3:26194856-26194875 None:intergenic 30.0%
!!! GGTTTTGAAAGAAGAAAGTA+GGG + chr7_3:26194903-26194922 None:intergenic 30.0%
!!! AGGTTTTGAAAGAAGAAAGT+AGG + chr7_3:26194904-26194923 None:intergenic 30.0%
!!! AAGATTTGAGTTTTGGAACA+AGG + chr7_3:26194924-26194943 None:intergenic 30.0%
!!! ATTGGTTTTGAAGAATCAGA+AGG + chr7_3:26195000-26195019 None:intergenic 30.0%
! ATAACTCTTTTTCCGAAAAG+TGG - chr7_3:26195198-26195217 Msa1098570:CDS 30.0%
CTCAAAAAGGGTTTCAAAAA+AGG + chr7_3:26195348-26195367 None:intergenic 30.0%
!!! TTTTGAAACCCTTTTTGAGT+AGG - chr7_3:26195349-26195368 Msa1098570:CDS 30.0%
!!! TTTGAAACCCTTTTTGAGTA+GGG - chr7_3:26195350-26195369 Msa1098570:CDS 30.0%
ATTACTTCCCTACTCAAAAA+GGG + chr7_3:26195360-26195379 None:intergenic 30.0%
AGAGTGAGATCATAAATAGT+TGG - chr7_3:26195400-26195419 Msa1098570:CDS 30.0%
!! TTTTGCTTTTGCTATGCAAA+CGG + chr7_3:26195661-26195680 None:intergenic 30.0%
!!! ATTTTGTTTTGGTTTTGCAG+TGG - chr7_3:26195710-26195729 Msa1098570:CDS 30.0%
CAATTTCCGAAATAGATTTC+GGG + chr7_3:26195765-26195784 None:intergenic 30.0%
TATTTGGCTATGATTGTTGA+AGG - chr7_3:26195927-26195946 Msa1098570:CDS 30.0%
ATGATTGTTGAAGGAATTCA+AGG - chr7_3:26195936-26195955 Msa1098570:CDS 30.0%
!! GGAGTATATGAGATTGATTT+TGG - chr7_3:26195987-26196006 Msa1098570:CDS 30.0%
!!! AGATTGATTTTGGTTATGGA+AGG - chr7_3:26195997-26196016 Msa1098570:CDS 30.0%
! GTTGATAGAGGAATAACAAT+TGG - chr7_3:26196044-26196063 Msa1098570:CDS 30.0%
ACAGAAAGTAGAGATTTGAA+AGG - chr7_3:26196071-26196090 Msa1098570:CDS 30.0%
!! GATAATTGGTTTGCAGAATT+AGG + chr7_3:26194790-26194809 None:intergenic 30.0%
TCACTTTCTTAGACTTGAAT+TGG - chr7_3:26194818-26194837 Msa1098570:CDS 30.0%
AGAAGAAAATACGTTCAACT+GGG + chr7_3:26194855-26194874 None:intergenic 30.0%
TAGAAGAAAATACGTTCAAC+TGG + chr7_3:26194856-26194875 None:intergenic 30.0%
!!! GGTTTTGAAAGAAGAAAGTA+GGG + chr7_3:26194903-26194922 None:intergenic 30.0%
!!! AGGTTTTGAAAGAAGAAAGT+AGG + chr7_3:26194904-26194923 None:intergenic 30.0%
!!! AAGATTTGAGTTTTGGAACA+AGG + chr7_3:26194924-26194943 None:intergenic 30.0%
!!! ATTGGTTTTGAAGAATCAGA+AGG + chr7_3:26195000-26195019 None:intergenic 30.0%
! ATAACTCTTTTTCCGAAAAG+TGG - chr7_3:26195198-26195217 Msa1098570:CDS 30.0%
CTCAAAAAGGGTTTCAAAAA+AGG + chr7_3:26195348-26195367 None:intergenic 30.0%
!!! TTTTGAAACCCTTTTTGAGT+AGG - chr7_3:26195349-26195368 Msa1098570:CDS 30.0%
!!! TTTGAAACCCTTTTTGAGTA+GGG - chr7_3:26195350-26195369 Msa1098570:CDS 30.0%
ATTACTTCCCTACTCAAAAA+GGG + chr7_3:26195360-26195379 None:intergenic 30.0%
AGAGTGAGATCATAAATAGT+TGG - chr7_3:26195400-26195419 Msa1098570:CDS 30.0%
!! TTTTGCTTTTGCTATGCAAA+CGG + chr7_3:26195661-26195680 None:intergenic 30.0%
!!! ATTTTGTTTTGGTTTTGCAG+TGG - chr7_3:26195710-26195729 Msa1098570:CDS 30.0%
CAATTTCCGAAATAGATTTC+GGG + chr7_3:26195765-26195784 None:intergenic 30.0%
TATTTGGCTATGATTGTTGA+AGG - chr7_3:26195927-26195946 Msa1098570:CDS 30.0%
ATGATTGTTGAAGGAATTCA+AGG - chr7_3:26195936-26195955 Msa1098570:CDS 30.0%
!! GGAGTATATGAGATTGATTT+TGG - chr7_3:26195987-26196006 Msa1098570:CDS 30.0%
!!! AGATTGATTTTGGTTATGGA+AGG - chr7_3:26195997-26196016 Msa1098570:CDS 30.0%
! GTTGATAGAGGAATAACAAT+TGG - chr7_3:26196044-26196063 Msa1098570:CDS 30.0%
ACAGAAAGTAGAGATTTGAA+AGG - chr7_3:26196071-26196090 Msa1098570:CDS 30.0%
AAGTGAGAGGAAGAGATAAT+TGG + chr7_3:26194804-26194823 None:intergenic 35.0%
TTCAAGTCTAAGAAAGTGAG+AGG + chr7_3:26194817-26194836 None:intergenic 35.0%
TAGGGTGTGATTGTGAATTT+GGG + chr7_3:26194885-26194904 None:intergenic 35.0%
!! GAGAGTGAAGATTTGAGTTT+TGG + chr7_3:26194931-26194950 None:intergenic 35.0%
!! TATAGGGAGAAAGTATTGGA+GGG + chr7_3:26194959-26194978 None:intergenic 35.0%
! AAACAATGTTACCGGCTATA+GGG + chr7_3:26194975-26194994 None:intergenic 35.0%
TTTGGATTGAACTGGATGAT+TGG + chr7_3:26195018-26195037 None:intergenic 35.0%
CAGTTCAATCCAAAAGATGA+CGG - chr7_3:26195024-26195043 Msa1098570:CDS 35.0%
! CTGCTCCACAATTTTATCAA+AGG + chr7_3:26195091-26195110 None:intergenic 35.0%
!! GAATCTGTTGATTCTAAGTG+AGG + chr7_3:26195153-26195172 None:intergenic 35.0%
!! CCAATGGAAAAACCACTTTT+CGG + chr7_3:26195213-26195232 None:intergenic 35.0%
ATGATGTGTGCTTATTCCAA+TGG + chr7_3:26195229-26195248 None:intergenic 35.0%
GATTACTTCCCTACTCAAAA+AGG + chr7_3:26195361-26195380 None:intergenic 35.0%
TTTGAGTAGGGAAGTAATCA+AGG - chr7_3:26195362-26195381 Msa1098570:CDS 35.0%
GAAGTAATCAAGGATCCAAA+TGG - chr7_3:26195372-26195391 Msa1098570:CDS 35.0%
ATCTCACTCTCAAAACCATT+TGG + chr7_3:26195390-26195409 None:intergenic 35.0%
! ACAAAAGTGTGTTGTCCAAA+TGG - chr7_3:26195556-26195575 Msa1098570:CDS 35.0%
AAATAGATTTCGGGAATTGG+TGG + chr7_3:26195756-26195775 None:intergenic 35.0%
CCAATTCCCGAAATCTATTT+CGG - chr7_3:26195756-26195775 Msa1098570:CDS 35.0%
! ATGGATAAGGGTTTTCTTGA+TGG - chr7_3:26195882-26195901 Msa1098570:CDS 35.0%
GTTGAAGGAATTCAAGGAAT+AGG - chr7_3:26195942-26195961 Msa1098570:CDS 35.0%
GAAAGTAGAGATTTGAAAGG+TGG - chr7_3:26196074-26196093 Msa1098570:CDS 35.0%
! TTGAAAGGTGGTGTTGAATT+TGG - chr7_3:26196086-26196105 Msa1098570:CDS 35.0%
! TGAAAGGTGGTGTTGAATTT+GGG - chr7_3:26196087-26196106 Msa1098570:CDS 35.0%
GCATAACCCTTCATGAAAAA+TGG + chr7_3:26196150-26196169 None:intergenic 35.0%
AAGTGAGAGGAAGAGATAAT+TGG + chr7_3:26194804-26194823 None:intergenic 35.0%
TTCAAGTCTAAGAAAGTGAG+AGG + chr7_3:26194817-26194836 None:intergenic 35.0%
TAGGGTGTGATTGTGAATTT+GGG + chr7_3:26194885-26194904 None:intergenic 35.0%
!! GAGAGTGAAGATTTGAGTTT+TGG + chr7_3:26194931-26194950 None:intergenic 35.0%
!! TATAGGGAGAAAGTATTGGA+GGG + chr7_3:26194959-26194978 None:intergenic 35.0%
! AAACAATGTTACCGGCTATA+GGG + chr7_3:26194975-26194994 None:intergenic 35.0%
TTTGGATTGAACTGGATGAT+TGG + chr7_3:26195018-26195037 None:intergenic 35.0%
CAGTTCAATCCAAAAGATGA+CGG - chr7_3:26195024-26195043 Msa1098570:CDS 35.0%
! CTGCTCCACAATTTTATCAA+AGG + chr7_3:26195091-26195110 None:intergenic 35.0%
!! GAATCTGTTGATTCTAAGTG+AGG + chr7_3:26195153-26195172 None:intergenic 35.0%
!! CCAATGGAAAAACCACTTTT+CGG + chr7_3:26195213-26195232 None:intergenic 35.0%
ATGATGTGTGCTTATTCCAA+TGG + chr7_3:26195229-26195248 None:intergenic 35.0%
GATTACTTCCCTACTCAAAA+AGG + chr7_3:26195361-26195380 None:intergenic 35.0%
TTTGAGTAGGGAAGTAATCA+AGG - chr7_3:26195362-26195381 Msa1098570:CDS 35.0%
GAAGTAATCAAGGATCCAAA+TGG - chr7_3:26195372-26195391 Msa1098570:CDS 35.0%
ATCTCACTCTCAAAACCATT+TGG + chr7_3:26195390-26195409 None:intergenic 35.0%
! ACAAAAGTGTGTTGTCCAAA+TGG - chr7_3:26195556-26195575 Msa1098570:CDS 35.0%
AAATAGATTTCGGGAATTGG+TGG + chr7_3:26195756-26195775 None:intergenic 35.0%
CCAATTCCCGAAATCTATTT+CGG - chr7_3:26195756-26195775 Msa1098570:CDS 35.0%
! ATGGATAAGGGTTTTCTTGA+TGG - chr7_3:26195882-26195901 Msa1098570:CDS 35.0%
GTTGAAGGAATTCAAGGAAT+AGG - chr7_3:26195942-26195961 Msa1098570:CDS 35.0%
GAAAGTAGAGATTTGAAAGG+TGG - chr7_3:26196074-26196093 Msa1098570:CDS 35.0%
! TTGAAAGGTGGTGTTGAATT+TGG - chr7_3:26196086-26196105 Msa1098570:CDS 35.0%
! TGAAAGGTGGTGTTGAATTT+GGG - chr7_3:26196087-26196106 Msa1098570:CDS 35.0%
GCATAACCCTTCATGAAAAA+TGG + chr7_3:26196150-26196169 None:intergenic 35.0%
TGTGATTGTGAATTTGGGAG+GGG + chr7_3:26194880-26194899 None:intergenic 40.0%
GTGTGATTGTGAATTTGGGA+GGG + chr7_3:26194881-26194900 None:intergenic 40.0%
GTAGGGTGTGATTGTGAATT+TGG + chr7_3:26194886-26194905 None:intergenic 40.0%
!! CTATAGGGAGAAAGTATTGG+AGG + chr7_3:26194960-26194979 None:intergenic 40.0%
CAATACTTTCTCCCTATAGC+CGG - chr7_3:26194961-26194980 Msa1098570:CDS 40.0%
! CAAACAATGTTACCGGCTAT+AGG + chr7_3:26194976-26194995 None:intergenic 40.0%
CTATAGCCGGTAACATTGTT+TGG - chr7_3:26194974-26194993 Msa1098570:CDS 40.0%
AGAAGGCCAAACAATGTTAC+CGG + chr7_3:26194983-26195002 None:intergenic 40.0%
! CGTCATCTTTTGGATTGAAC+TGG + chr7_3:26195026-26195045 None:intergenic 40.0%
! AACGAAACTCCGTCATCTTT+TGG + chr7_3:26195036-26195055 None:intergenic 40.0%
CGAGATAAAGAAGCTTCTTG+TGG + chr7_3:26195120-26195139 None:intergenic 40.0%
! CCGAAAAGTGGTTTTTCCAT+TGG - chr7_3:26195210-26195229 Msa1098570:CDS 40.0%
ACACATCATGCTGTTCTTGA+TGG - chr7_3:26195240-26195259 Msa1098570:CDS 40.0%
CAACCATGTTCATCAAAGCA+TGG - chr7_3:26195271-26195290 Msa1098570:CDS 40.0%
AGACCATGCTTTGATGAACA+TGG + chr7_3:26195277-26195296 None:intergenic 40.0%
! CGAACGGAATCCTTAACTTT+TGG + chr7_3:26195495-26195514 None:intergenic 40.0%
CCGAAATAGATTTCGGGAAT+TGG + chr7_3:26195759-26195778 None:intergenic 40.0%
TCTTCCTTGGTAAAGTCTTC+TGG + chr7_3:26195816-26195835 None:intergenic 40.0%
GAAGACTTTACCAAGGAAGA+TGG - chr7_3:26195816-26195835 Msa1098570:CDS 40.0%
ATTCAAGGAATAGGAGTTGC+AGG - chr7_3:26195951-26195970 Msa1098570:CDS 40.0%
TTCAAGGAATAGGAGTTGCA+GGG - chr7_3:26195952-26195971 Msa1098570:CDS 40.0%
!! GAGACAACTTCAGTTGATAG+AGG - chr7_3:26196032-26196051 Msa1098570:CDS 40.0%
TGTTCTTGATAAGCACGTGA+TGG - chr7_3:26196112-26196131 Msa1098570:CDS 40.0%
GTTCTTGATAAGCACGTGAT+GGG - chr7_3:26196113-26196132 Msa1098570:CDS 40.0%
TGTGATTGTGAATTTGGGAG+GGG + chr7_3:26194880-26194899 None:intergenic 40.0%
GTGTGATTGTGAATTTGGGA+GGG + chr7_3:26194881-26194900 None:intergenic 40.0%
GTAGGGTGTGATTGTGAATT+TGG + chr7_3:26194886-26194905 None:intergenic 40.0%
!! CTATAGGGAGAAAGTATTGG+AGG + chr7_3:26194960-26194979 None:intergenic 40.0%
CAATACTTTCTCCCTATAGC+CGG - chr7_3:26194961-26194980 Msa1098570:CDS 40.0%
! CAAACAATGTTACCGGCTAT+AGG + chr7_3:26194976-26194995 None:intergenic 40.0%
CTATAGCCGGTAACATTGTT+TGG - chr7_3:26194974-26194993 Msa1098570:CDS 40.0%
AGAAGGCCAAACAATGTTAC+CGG + chr7_3:26194983-26195002 None:intergenic 40.0%
! CGTCATCTTTTGGATTGAAC+TGG + chr7_3:26195026-26195045 None:intergenic 40.0%
! AACGAAACTCCGTCATCTTT+TGG + chr7_3:26195036-26195055 None:intergenic 40.0%
CGAGATAAAGAAGCTTCTTG+TGG + chr7_3:26195120-26195139 None:intergenic 40.0%
! CCGAAAAGTGGTTTTTCCAT+TGG - chr7_3:26195210-26195229 Msa1098570:CDS 40.0%
ACACATCATGCTGTTCTTGA+TGG - chr7_3:26195240-26195259 Msa1098570:CDS 40.0%
CAACCATGTTCATCAAAGCA+TGG - chr7_3:26195271-26195290 Msa1098570:CDS 40.0%
AGACCATGCTTTGATGAACA+TGG + chr7_3:26195277-26195296 None:intergenic 40.0%
! CGAACGGAATCCTTAACTTT+TGG + chr7_3:26195495-26195514 None:intergenic 40.0%
CCGAAATAGATTTCGGGAAT+TGG + chr7_3:26195759-26195778 None:intergenic 40.0%
TCTTCCTTGGTAAAGTCTTC+TGG + chr7_3:26195816-26195835 None:intergenic 40.0%
GAAGACTTTACCAAGGAAGA+TGG - chr7_3:26195816-26195835 Msa1098570:CDS 40.0%
ATTCAAGGAATAGGAGTTGC+AGG - chr7_3:26195951-26195970 Msa1098570:CDS 40.0%
TTCAAGGAATAGGAGTTGCA+GGG - chr7_3:26195952-26195971 Msa1098570:CDS 40.0%
!! GAGACAACTTCAGTTGATAG+AGG - chr7_3:26196032-26196051 Msa1098570:CDS 40.0%
TGTTCTTGATAAGCACGTGA+TGG - chr7_3:26196112-26196131 Msa1098570:CDS 40.0%
GTTCTTGATAAGCACGTGAT+GGG - chr7_3:26196113-26196132 Msa1098570:CDS 40.0%
GTGATTGTGAATTTGGGAGG+GGG + chr7_3:26194879-26194898 None:intergenic 45.0%
GGTGTGATTGTGAATTTGGG+AGG + chr7_3:26194882-26194901 None:intergenic 45.0%
! CGGCTATAGGGAGAAAGTAT+TGG + chr7_3:26194963-26194982 None:intergenic 45.0%
TGAGCCAGAAGACTTTACCA+AGG - chr7_3:26195809-26195828 Msa1098570:CDS 45.0%
CTTTACCAAGGAAGATGGAG+TGG - chr7_3:26195821-26195840 Msa1098570:CDS 45.0%
AATCACCACTCCATCTTCCT+TGG + chr7_3:26195829-26195848 None:intergenic 45.0%
TTATGGAAGGCCTGCAAAAG+TGG - chr7_3:26196010-26196029 Msa1098570:CDS 45.0%
!! GAAGTTGTCTCCACTTTTGC+AGG + chr7_3:26196023-26196042 None:intergenic 45.0%
GTGATTGTGAATTTGGGAGG+GGG + chr7_3:26194879-26194898 None:intergenic 45.0%
GGTGTGATTGTGAATTTGGG+AGG + chr7_3:26194882-26194901 None:intergenic 45.0%
! CGGCTATAGGGAGAAAGTAT+TGG + chr7_3:26194963-26194982 None:intergenic 45.0%
TGAGCCAGAAGACTTTACCA+AGG - chr7_3:26195809-26195828 Msa1098570:CDS 45.0%
CTTTACCAAGGAAGATGGAG+TGG - chr7_3:26195821-26195840 Msa1098570:CDS 45.0%
AATCACCACTCCATCTTCCT+TGG + chr7_3:26195829-26195848 None:intergenic 45.0%
TTATGGAAGGCCTGCAAAAG+TGG - chr7_3:26196010-26196029 Msa1098570:CDS 45.0%
!! GAAGTTGTCTCCACTTTTGC+AGG + chr7_3:26196023-26196042 None:intergenic 45.0%
CGAGCTCACACGTGAAGATT+TGG - chr7_3:26195524-26195543 Msa1098570:CDS 50.0%
TAGGAGTTGCAGGGTCAACA+AGG - chr7_3:26195961-26195980 Msa1098570:CDS 50.0%
GTTGCAGGGTCAACAAGGTT+TGG - chr7_3:26195966-26195985 Msa1098570:CDS 50.0%
CGAGCTCACACGTGAAGATT+TGG - chr7_3:26195524-26195543 Msa1098570:CDS 50.0%
TAGGAGTTGCAGGGTCAACA+AGG - chr7_3:26195961-26195980 Msa1098570:CDS 50.0%
GTTGCAGGGTCAACAAGGTT+TGG - chr7_3:26195966-26195985 Msa1098570:CDS 50.0%
GAGCTCGAATGCGACTCGAA+CGG + chr7_3:26195511-26195530 None:intergenic 55.0%
GAGCTCGAATGCGACTCGAA+CGG + chr7_3:26195511-26195530 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 26194736 26196178 26194736 ID=Msa1098570;Name=Msa1098570
chr7_3 mRNA 26194736 26196178 26194736 ID=Msa1098570-mRNA-1;Parent=Msa1098570;Name=Msa1098570-mRNA-1;_AED=0.27;_eAED=0.27;_QI=0|-1|0|1|-1|1|1|0|480
chr7_3 exon 26194736 26196178 26194736 ID=Msa1098570-mRNA-1:exon:5576;Parent=Msa1098570-mRNA-1
chr7_3 CDS 26194736 26196178 26194736 ID=Msa1098570-mRNA-1:cds;Parent=Msa1098570-mRNA-1
Gene Sequence

>Msa1098570

ATGGCTGCTGCAAAGAATCACATCAAAATTCATGAAGAATGTAAAGTTTCTCCTAATTCTGCAAACCAATTATCTCTTCCTCTCACTTTCTTAGACTTGAATTGGCTAAGATTTCACCCAGTTGAACGTATTTTCTTCTACCCCCTCCCAAATTCACAATCACACCCTACTTTCTTCTTTCAAAACCTTGTTCCAAAACTCAAATCTTCACTCTCTTTAACCCTCCAATACTTTCTCCCTATAGCCGGTAACATTGTTTGGCCTTCTGATTCTTCAAAACCAATCATCCAGTTCAATCCAAAAGATGACGGAGTTTCGTTGCTCTTAGCGCAATATGATGACGATGTAGTTTCCTTTGATAAAATTGTGGAGCAGAATTCACCACAAGAAGCTTCTTTATCTCGTTCTTTTGTACCTCACTTAGAATCAACAGATTCTTTTGCTTCTATCATTTCAATTCAGATAACTCTTTTTCCGAAAAGTGGTTTTTCCATTGGAATAAGCACACATCATGCTGTTCTTGATGGAAAATCTTCAACCATGTTCATCAAAGCATGGTCTTCTATATGTAAATCTCTTGAAGAAGAAACACAATCATCAAATTTAGAGCCTTTTTTGAAACCCTTTTTGAGTAGGGAAGTAATCAAGGATCCAAATGGTTTTGAGAGTGAGATCATAAATAGTTGGAACAAAATCTCAACACATTTTGATCAATGCAATGTGAGAAGCTTAAAGATTATGTCAAATTTTTTTGAACCAAAAGTTAAGGATTCCGTTCGAGTCGCATTCGAGCTCACACGTGAAGATTTGGAGAAATTAAACAAAAGTGTGTTGTCCAAATGGAACAATATTGAAGAAGGATCACAAGAACAAGAACAACCAAAGAAATTGTCAACTTTTGTTCTTACATGTGCTTATGTTTCCGTTTGCATAGCAAAAGCAAAACAACAATCTGAAAGCAATCAAAAACAAAAATTTTGTTTTGGTTTTGCAGTGGATATCAGATCAAGATTAGATCCACCAATTCCCGAAATCTATTTCGGAAATTGTGTAACTAATCATATAATTGATACTGAGCCAGAAGACTTTACCAAGGAAGATGGAGTGGTGATTGTTGCAAAGAAAATTTATAGCAAAATTAGAAAAATGGATAAGGGTTTTCTTGATGGTGTAGATACATTGTTGTCTAAATATTTGGCTATGATTGTTGAAGGAATTCAAGGAATAGGAGTTGCAGGGTCAACAAGGTTTGGAGTATATGAGATTGATTTTGGTTATGGAAGGCCTGCAAAAGTGGAGACAACTTCAGTTGATAGAGGAATAACAATTGGATTAACAGAAAGTAGAGATTTGAAAGGTGGTGTTGAATTTGGGCTTGTTCTTGATAAGCACGTGATGGGTTTTTTTCATACCATTTTTCATGAAGGGTTATGCTTTGATTGA

Protein sequence

>Msa1098570

MAAAKNHIKIHEECKVSPNSANQLSLPLTFLDLNWLRFHPVERIFFYPLPNSQSHPTFFFQNLVPKLKSSLSLTLQYFLPIAGNIVWPSDSSKPIIQFNPKDDGVSLLLAQYDDDVVSFDKIVEQNSPQEASLSRSFVPHLESTDSFASIISIQITLFPKSGFSIGISTHHAVLDGKSSTMFIKAWSSICKSLEEETQSSNLEPFLKPFLSREVIKDPNGFESEIINSWNKISTHFDQCNVRSLKIMSNFFEPKVKDSVRVAFELTREDLEKLNKSVLSKWNNIEEGSQEQEQPKKLSTFVLTCAYVSVCIAKAKQQSESNQKQKFCFGFAVDIRSRLDPPIPEIYFGNCVTNHIIDTEPEDFTKEDGVVIVAKKIYSKIRKMDKGFLDGVDTLLSKYLAMIVEGIQGIGVAGSTRFGVYEIDFGYGRPAKVETTSVDRGITIGLTESRDLKGGVEFGLVLDKHVMGFFHTIFHEGLCFD*