AlfalfaGEDB | Msa1004410

M. sativa cultivar zhongmu-4 / Msa1004410

KEGG: -
GO: -
PFAM: PF13714.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1004410	XP_039683635.1	85.988	521	27	3	1	519	2	478	0.0	894

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1004410	sp\|Q0QLE4\|DML_EUBBA	36.228	334	163	6	55	386	2	287	2.12e-58	198

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1004410	A2Q4X2	85.988	521	27	3	1	519	2	478	0.0	894

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002110	Msa1004410	0.800453	1.431168e-48	-8.615850e-47
Msa0007810	Msa1004410	0.814377	1.588844e-51	-8.615850e-47
Msa0037650	Msa1004410	0.818799	1.622923e-52	-8.615850e-47
Msa0037780	Msa1004410	0.803595	3.233870e-49	-8.615850e-47
Msa0056230	Msa1004410	0.809500	1.835440e-50	-8.615850e-47
Msa0066890	Msa1004410	0.816177	6.324864e-52	-8.615850e-47
Msa0095810	Msa1004410	0.802158	6.405837e-49	-8.615850e-47
Msa0136180	Msa1004410	0.809993	1.437425e-50	-8.615850e-47
Msa0140770	Msa1004410	0.807910	4.012365e-50	-8.615850e-47
Msa0154890	Msa1004410	0.826263	2.986081e-54	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1004410	MtrunA17_Chr7g0214651	85.988	521	27	3	1	519	2	478	0.0	894
Msa1004410	MtrunA17_Chr7g0214571	58.710	310	83	2	55	363	7	272	3.49e-119	355

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1004410	AT2G43180.1	59.118	499	137	9	29	519	40	479	0.0	541
Msa1004410	AT2G43180.3	59.118	499	136	9	29	519	40	478	0.0	539
Msa1004410	AT2G43180.2	57.359	462	131	8	29	483	40	442	8.75e-169	485
Msa1004410	AT2G43180.4	56.637	452	130	8	29	473	40	432	2.52e-159	461
Msa1004410	AT1G77060.1	30.556	360	193	8	38	391	26	334	4.40e-44	159
Msa1004410	AT1G21440.2	31.902	326	166	8	73	391	56	332	1.78e-40	149
Msa1004410	AT1G21440.1	31.902	326	166	8	73	391	56	332	1.78e-40	149

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Find 162 sgRNAs with CRISPR-Local

Find 574 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCGTGTGGTCACACAC+AGG	0.622362	7_1:+1909542	Msa1004410:CDS
AAAAGCTTCCATCTCTTGTC+TGG	0.386562	7_1:-1909763	None:intergenic
AAAATGATGTACGGAAGTGG+TGG	0.580400	7_1:-1903650	None:intergenic
AAACAATATTTGATATCAGT+GGG	0.518843	7_1:+1913298	Msa1004410:three_prime_UTR
AAACCGCTTGTGAAACATAA+CGG	0.583311	7_1:-1903852	None:intergenic
AAAGCGTGTGGTCACACACA+GGG	0.610994	7_1:+1909543	Msa1004410:CDS
AAAGTTGGCATGCTTCCTGG+AGG	0.678103	7_1:-1910856	None:intergenic
AACAAGAATAAAATAAAATA+AGG	0.315701	7_1:-1913461	None:intergenic
AACGCAACCGCCACCAGGGG+TGG	0.521008	7_1:-1903619	None:intergenic
AACTACCATGGAAAGGATAT+AGG	0.394104	7_1:-1913380	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGAACATGAAATTGTGATTG+TGG	-	chr7_1:1903724-1903743	None:intergenic	30.0%
GAATGTTAAGAGAACTGTTA+AGG	+	chr7_1:1904016-1904035	Msa1004410:CDS	30.0%
GCATTATGATGTGATTTGAT+TGG	+	chr7_1:1904461-1904480	Msa1004410:intron	30.0%
TATGATGTGATTTGATTGGA+TGG	+	chr7_1:1904465-1904484	Msa1004410:intron	30.0%
TATGTAATTTAGGGACAGTT+AGG	-	chr7_1:1904554-1904573	Msa1004420:three_prime_UTR	30.0%
TGTAGAAATTGGAATGGTAT+TGG	-	chr7_1:1904673-1904692	Msa1004420:three_prime_UTR	30.0%
CTTCAATGTAGAAATTGGAA+TGG	-	chr7_1:1904679-1904698	Msa1004420:three_prime_UTR	30.0%
CATTCCAATTTCTACATTGA+AGG	+	chr7_1:1904677-1904696	Msa1004410:intron	30.0%
AGAGAGAGAATATAAAGTGA+AGG	-	chr7_1:1904794-1904813	Msa1004420:three_prime_UTR	30.0%
TTGTTTGTAGATTGATGAAG+AGG	-	chr7_1:1904982-1905001	Msa1004420:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	1903585	1913617	1903585	ID=Msa1004410;Name=Msa1004410
chr7_1	mRNA	1903585	1913617	1903585	ID=Msa1004410-mRNA-1;Parent=Msa1004410;Name=Msa1004410-mRNA-1;_AED=0.23;_eAED=0.23;_QI=0\|0.77\|0.7\|1\|0.88\|0.9\|10\|523\|519
chr7_1	exon	1903585	1904038	1903585	ID=Msa1004410-mRNA-1:exon:756;Parent=Msa1004410-mRNA-1
chr7_1	exon	1904926	1905016	1904926	ID=Msa1004410-mRNA-1:exon:757;Parent=Msa1004410-mRNA-1
chr7_1	exon	1905899	1905983	1905899	ID=Msa1004410-mRNA-1:exon:758;Parent=Msa1004410-mRNA-1
chr7_1	exon	1909534	1909815	1909534	ID=Msa1004410-mRNA-1:exon:759;Parent=Msa1004410-mRNA-1
chr7_1	exon	1909902	1910024	1909902	ID=Msa1004410-mRNA-1:exon:760;Parent=Msa1004410-mRNA-1
chr7_1	exon	1910820	1910970	1910820	ID=Msa1004410-mRNA-1:exon:761;Parent=Msa1004410-mRNA-1
chr7_1	exon	1911485	1911705	1911485	ID=Msa1004410-mRNA-1:exon:762;Parent=Msa1004410-mRNA-1
chr7_1	exon	1912174	1912210	1912174	ID=Msa1004410-mRNA-1:exon:763;Parent=Msa1004410-mRNA-1
chr7_1	exon	1912301	1912443	1912301	ID=Msa1004410-mRNA-1:exon:764;Parent=Msa1004410-mRNA-1
chr7_1	exon	1913122	1913617	1913122	ID=Msa1004410-mRNA-1:exon:765;Parent=Msa1004410-mRNA-1
chr7_1	CDS	1903585	1904038	1903585	ID=Msa1004410-mRNA-1:cds;Parent=Msa1004410-mRNA-1
chr7_1	CDS	1904926	1905016	1904926	ID=Msa1004410-mRNA-1:cds;Parent=Msa1004410-mRNA-1
chr7_1	CDS	1905899	1905983	1905899	ID=Msa1004410-mRNA-1:cds;Parent=Msa1004410-mRNA-1
chr7_1	CDS	1909534	1909815	1909534	ID=Msa1004410-mRNA-1:cds;Parent=Msa1004410-mRNA-1
chr7_1	CDS	1909902	1910024	1909902	ID=Msa1004410-mRNA-1:cds;Parent=Msa1004410-mRNA-1
chr7_1	CDS	1910820	1910970	1910820	ID=Msa1004410-mRNA-1:cds;Parent=Msa1004410-mRNA-1
chr7_1	CDS	1911485	1911705	1911485	ID=Msa1004410-mRNA-1:cds;Parent=Msa1004410-mRNA-1
chr7_1	CDS	1912174	1912210	1912174	ID=Msa1004410-mRNA-1:cds;Parent=Msa1004410-mRNA-1
chr7_1	CDS	1912301	1912416	1912301	ID=Msa1004410-mRNA-1:cds;Parent=Msa1004410-mRNA-1
chr7_1	three_prime_UTR	1912417	1912443	1912417	ID=Msa1004410-mRNA-1:three_prime_utr;Parent=Msa1004410-mRNA-1
chr7_1	three_prime_UTR	1913122	1913617	1913122	ID=Msa1004410-mRNA-1:three_prime_utr;Parent=Msa1004410-mRNA-1

Gene Sequence

>Msa1004410

ATGAGCTGCTCCGCCACAATTGGCCGCGCCGGCGCCACCCCTGGTGGCGGTTGCGTTCCTCATCTCCACCACTTCCGTACATCATTTTCTTCCCCTTTCCAGTTCCAATCTCGCCGGAACTCTAAACCAATACGCGCCACAATCACAATTTCATGTTCTTCAAACAAAGCGAAGCAACTTCGCGAAATTCTCGATTCACCAGGACTTCATCAAGGTCCAGCATGTTTCGACGCACTCAGTGCAAATCTCGTTCAATCCGCTGGATTTCCGTTATGTTTCACAAGCGGTTTTTCTATCTCTGCTTCTCGATTGGGATTGCCTGATACAGGCTATTTGTCTTACGGCGAAATCGTCGAACAAGGTCGTCTTATTACTCAATCTGTTGGAATTCCTGTTATTGGTGATGCTGATAATGGTTATGGTAATGCTATGAATGTTAAGAGAACTGTTAAGGGAAACGTGAAACTTCTTTACTCATCAAAACAAGTAGTCCAATGCTGCAAAGTGCCTCTTCATCAATCTACAAACAAAGAAAAAAAACACAATATGACAGTAGTGGAGAACAAAATATCTCGTCCTCATCATGACATGAAGACTTACCAACCAATGAATCTGATGCACTACGAACCGGTATCTCCAAAAGCGTGTGGTCACACACAGGGGAGGAAAGTGGTATCGAGAGAAGAGGCAGTCATGCGAATCAAAGCTGCGGTTGATGCCAGAAATGAGAGTGGATCTGATATTGTGATTGTGGCTCGCACCGATGCGCGCCAAGCCCTGTCTCTTGATGAGGCACTCTATAGGTCAAGGGCATTTGCTGATGCTGGAGCTGATGTTGTTTTTATAGACGCACTTGCTTCCAGACAAGAGATGGAAGCTTTTTGTCAAGTTTCTCCTCTTGTTCCAAAAATGGCCAATATGCTTGAAGGAGGAGGCAAAACACCGATACTCACTCCTCTTGAACTTGAAGACATTGGTTATAAAATTGTTGCCTATCCCCTTTCCTTGATTGGAGTTTCTATACGAGCAATGCAGGATGCGCTGACTGCTATTAAAGGAGGTCGTATTCCTCCTCCAGGAAGCATGCCAACTTTTGAAGAAATTAAGGATACTTTAGGTTTCAACGCATATTATGAAGAAGAGAAGCGTTATGCTACAAGTACCGATCAGCTGCTTTCAAAGAGAGAGAGCAGTAGCGTATACAGTATACAACAGAGAGAGCAAGTTGATACAGAGCAGACAAGTCAAACTATCGAAGATCCCATTGTGGAAGTTATAACACCTGATGTGTACAATAAATATGGTGCAGATGGTTCAAGGGACCCTTTTACTGGAATCTGGTCCCGGACTCTGAGAATTAAAATAATTGGCAGAGATGGAGTCGAGAAACTTGATCTCCGTATTCCTGCTGGATTTCTGGATGGAATCACAAACATAGTTCCTGCTTTGGGTGGGGTCAACCTCAAAAAACTATTGGATGATGCAACAGAGGAAACTGGGGGAAAACTGCTAGATTTTAATGACAGAATGGGTGACAGGATTCAAGTATTTCTGGAGTGA

Protein sequence

>Msa1004410

MSCSATIGRAGATPGGGCVPHLHHFRTSFSSPFQFQSRRNSKPIRATITISCSSNKAKQLREILDSPGLHQGPACFDALSANLVQSAGFPLCFTSGFSISASRLGLPDTGYLSYGEIVEQGRLITQSVGIPVIGDADNGYGNAMNVKRTVKGNVKLLYSSKQVVQCCKVPLHQSTNKEKKHNMTVVENKISRPHHDMKTYQPMNLMHYEPVSPKACGHTQGRKVVSREEAVMRIKAAVDARNESGSDIVIVARTDARQALSLDEALYRSRAFADAGADVVFIDALASRQEMEAFCQVSPLVPKMANMLEGGGKTPILTPLELEDIGYKIVAYPLSLIGVSIRAMQDALTAIKGGRIPPPGSMPTFEEIKDTLGFNAYYEEEKRYATSTDQLLSKRESSSVYSIQQREQVDTEQTSQTIEDPIVEVITPDVYNKYGADGSRDPFTGIWSRTLRIKIIGRDGVEKLDLRIPAGFLDGITNIVPALGGVNLKKLLDDATEETGGKLLDFNDRMGDRIQVFLE*