AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0177020


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0177020 MtrunA17_Chr1g0199701 97.857 280 6 0 22 301 1 280 0.0 571
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0177020 AT2G39000.1 65.753 292 77 5 22 299 1 283 6.35e-136 387
Msa0177020 AT2G39000.3 75.664 226 55 0 74 299 2 227 1.08e-132 376
Msa0177020 AT2G39000.4 63.819 199 49 5 22 206 1 190 4.01e-80 242
Msa0177020 AT2G39000.2 62.814 199 49 5 22 205 1 189 1.27e-79 241

Find 75 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGATCAAACTTTCTTATT+TGG 0.151315 1_4:-63791264 Msa0177020:CDS
ACCTGTCTGGTTGCCGTTAT+TGG 0.172711 1_4:-63791294 Msa0177020:CDS
CATGATCTTGGTAGGGTATA+AGG 0.293357 1_4:+63789346 None:intergenic
TTTCAAATCTATAAAGGTTC+CGG 0.297267 1_4:-63789669 Msa0177020:CDS
TTTGATGTGTTTATAGGTTT+CGG 0.302342 1_4:+63792378 None:intergenic
GCAAGGTTTCAAATCTATAA+AGG 0.323365 1_4:-63789675 Msa0177020:CDS
AATCAACTACTTTACCATCT+TGG 0.323444 1_4:-63792326 Msa0177020:CDS
TCTAATGGAAATGAATATTC+AGG 0.338599 1_4:+63791387 None:intergenic
ATCAACTACTTTACCATCTT+GGG 0.351438 1_4:-63792325 Msa0177020:CDS
AGGCAAGAATAGAGGATTGT+TGG 0.356437 1_4:-63791443 Msa0177020:CDS
GGCACGGCATCCCCAACTTC+TGG 0.361672 1_4:+63789751 None:intergenic
ATCCTCAACACAAAATCTAA+TGG 0.371362 1_4:+63791372 None:intergenic
CAAGGTAGAAATATTTGTAT+AGG 0.380747 1_4:-63789437 Msa0177020:three_prime_UTR
TTTCTTACTCCCTCTCAATC+AGG 0.386333 1_4:-63792276 Msa0177020:intron
AGTGAAGACTTCAAGATTGC+GGG 0.393136 1_4:-63791240 Msa0177020:CDS
GGCAAGAATAGAGGATTGTT+GGG 0.399207 1_4:-63791442 Msa0177020:CDS
TTCAAATCTATAAAGGTTCC+GGG 0.414198 1_4:-63789668 Msa0177020:CDS
TGTGTTGAGGATGGATAGAT+TGG 0.415569 1_4:-63791361 Msa0177020:CDS
ATGAAGTTGAATTTCACATC+TGG 0.422521 1_4:+63789614 None:intergenic
GCAGACTTTCTGCCTAGAAA+AGG 0.422772 1_4:-63791153 Msa0177020:CDS
AGAATCACAAGCCAGAAGTT+GGG 0.428773 1_4:-63789762 Msa0177020:CDS
AGGTTCCGGGAGGAGCTAAC+TGG 0.431391 1_4:-63789655 Msa0177020:CDS
AGCTAAACAATTGGTGGCTA+AGG 0.435007 1_4:-63789786 Msa0177020:CDS
CTTCATTTAGATATGAACTT+AGG 0.435917 1_4:+63789392 None:intergenic
ATCAAGTGAATTGCCAATAA+CGG 0.449266 1_4:+63791281 None:intergenic
AAAGAGAATTCATGAGATGA+AGG 0.455572 1_4:+63792297 None:intergenic
CAGAATCACAAGCCAGAAGT+TGG 0.456663 1_4:-63789763 Msa0177020:CDS
GCAGGATTCTCTTTACCAAA+TGG 0.460775 1_4:-63791327 Msa0177020:CDS
GAAAGGAATAGCTAAACAAT+TGG 0.467703 1_4:-63789795 Msa0177020:CDS
TGGTATAACTTAGTCGCTGC+AGG 0.476153 1_4:+63789701 None:intergenic
TAGATTTGAAACCTTGCCCT+TGG 0.481800 1_4:+63789681 None:intergenic
GCCAATAACGGCAACCAGAC+AGG 0.486976 1_4:+63791293 None:intergenic
ATTTCTACCTTGCAATTCCA+AGG 0.490282 1_4:+63789448 None:intergenic
CAGACTTTCTGCCTAGAAAA+GGG 0.491927 1_4:-63791152 Msa0177020:CDS
AGATTGGTGGCTATGTTAGC+AGG 0.496959 1_4:-63791345 Msa0177020:CDS
GAACAAATCAACAACTTGAC+TGG 0.498714 1_4:+63791497 None:intergenic
GCCTCTCTAACAGTGATCTC+AGG 0.499285 1_4:+63791462 None:intergenic
GTGGTATTGACCGCATTTCG+TGG 0.521118 1_4:+63792418 None:intergenic
TGAAGAATTGAAGCTTATAA+CGG 0.523998 1_4:-63789374 Msa0177020:three_prime_UTR
TGTTAGAGAGGCAAGAATAG+AGG 0.524179 1_4:-63791451 Msa0177020:CDS
CTCAACAAGGGATATGTGGC+TGG 0.532427 1_4:-63791198 Msa0177020:CDS
TATTGACCGCATTTCGTGGA+GGG 0.534157 1_4:+63792422 None:intergenic
AATAGAGGATTGTTGGGAAG+TGG 0.538776 1_4:-63791436 Msa0177020:CDS
GAATCACAAGCCAGAAGTTG+GGG 0.540089 1_4:-63789761 Msa0177020:CDS
GACGTGTGTAAGTAAACCCT+TGG 0.545638 1_4:-63789465 Msa0177020:three_prime_UTR
AAATATTTGTATAGGTACAT+TGG 0.547642 1_4:-63789429 Msa0177020:three_prime_UTR
AAGCCTCAACAAGGGATATG+TGG 0.555870 1_4:-63791202 Msa0177020:CDS
AGGAATAGCTAAACAATTGG+TGG 0.557067 1_4:-63789792 Msa0177020:CDS
TGGTTGCAAAAGAACCTGTC+TGG 0.566369 1_4:-63791307 Msa0177020:CDS
TTTCTACCTTGCAATTCCAA+GGG 0.570026 1_4:+63789449 None:intergenic
AAGTGAAGACTTCAAGATTG+CGG 0.578803 1_4:-63791241 Msa0177020:CDS
GTTGAGGATGGATAGATTGG+TGG 0.579094 1_4:-63791358 Msa0177020:CDS
TAACATAATAACACTGTGAA+GGG 0.582551 1_4:+63792496 None:intergenic
AAGGGCCGCTGCGACAGAGA+AGG 0.584345 1_4:-63791134 Msa0177020:intron
TGAGGCCAGTTAGCTCCTCC+CGG 0.584487 1_4:+63789650 None:intergenic
CGCAGTGTAATGCAATGGCA+CGG 0.588182 1_4:+63789735 None:intergenic
ATAACATAATAACACTGTGA+AGG 0.593722 1_4:+63792495 None:intergenic
AGTAAACCCTTGGAATTGCA+AGG 0.596414 1_4:-63789455 Msa0177020:three_prime_UTR
TCCTGAGATCACTGTTAGAG+AGG 0.598518 1_4:-63791463 Msa0177020:CDS
CAGCCACATATCCCTTGTTG+AGG 0.606889 1_4:+63791199 None:intergenic
GAAATGCGGTCAATACCACT+TGG 0.610789 1_4:-63792414 Msa0177020:CDS
ACTAAGTTATACCAAGGGCA+AGG 0.625968 1_4:-63789692 Msa0177020:CDS
TATAGGTTTCGGAGATACTG+AGG 0.630791 1_4:+63792389 None:intergenic
GTATTGACCGCATTTCGTGG+AGG 0.631265 1_4:+63792421 None:intergenic
TGGGAAATTAAGCCTCAACA+AGG 0.631474 1_4:-63791211 Msa0177020:CDS
TAAATCGCAGTGTAATGCAA+TGG 0.632285 1_4:+63789730 None:intergenic
GATGAAGGTGAAACCCAAGA+TGG 0.636670 1_4:+63792312 None:intergenic
AATTGCATACATATCAAATG+TGG 0.643430 1_4:-63789840 Msa0177020:CDS
AGACAACCCTCCACGAAATG+CGG 0.648290 1_4:-63792428 Msa0177020:CDS
GCAGCGACTAAGTTATACCA+AGG 0.656357 1_4:-63789698 Msa0177020:CDS
CAGCGACTAAGTTATACCAA+GGG 0.685126 1_4:-63789697 Msa0177020:CDS
GGGAAATTAAGCCTCAACAA+GGG 0.686786 1_4:-63791210 Msa0177020:CDS
GGAGATACTGAGGTTCCAAG+TGG 0.704704 1_4:+63792399 None:intergenic
AAATCTATAAAGGTTCCGGG+AGG 0.724022 1_4:-63789665 Msa0177020:CDS
ACTCACCTTCTCTGTCGCAG+CGG 0.733197 1_4:+63791129 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGTTCTTTTTTTTTTATTTA+AGG - chr1_4:63789639-63789658 Msa0177020:CDS 10.0%
!!! AAATTAATTTAAACATGTTT+TGG + chr1_4:63791259-63791278 None:intergenic 10.0%
!!! ACTTTTTCATGTTTTTAATT+TGG - chr1_4:63789609-63789628 Msa0177020:CDS 15.0%
!!! AAACTGATTAATTTTGTTAT+TGG - chr1_4:63789695-63789714 Msa0177020:CDS 15.0%
!! AACTATTTATTTACTACAAT+TGG - chr1_4:63789903-63789922 Msa0177020:intron 15.0%
!!! GCATGTTTTTAAATAATTTT+GGG + chr1_4:63790192-63790211 None:intergenic 15.0%
!!! TGCATGTTTTTAAATAATTT+TGG + chr1_4:63790193-63790212 None:intergenic 15.0%
!!! TTGATTTTGTAAATTTGTTT+TGG - chr1_4:63790903-63790922 Msa0177020:intron 15.0%
!!! ATAAAAAGTAGTTTGTATTT+TGG + chr1_4:63791213-63791232 None:intergenic 15.0%
!! TAATTATCTGAAAATTGTTA+AGG + chr1_4:63791322-63791341 None:intergenic 15.0%
!! TTATGTATAAAAACTATTGT+AGG - chr1_4:63791992-63792011 Msa0177020:intron 15.0%
!!! GAAATTTTTGATGTGTTTAT+AGG + chr1_4:63789491-63789510 None:intergenic 20.0%
!! ATTTAAGGAAATTAGTAGAT+CGG - chr1_4:63789654-63789673 Msa0177020:CDS 20.0%
!!! AGTTAGGTAGTATTTTAAAT+TGG - chr1_4:63789976-63789995 Msa0177020:intron 20.0%
!! AAAGTTAACATCACAAATTA+GGG + chr1_4:63790297-63790316 None:intergenic 20.0%
!! TTGAATGTAAAATGTTTGAA+TGG - chr1_4:63790937-63790956 Msa0177020:intron 20.0%
!!! ATCTTTTTCTTATAATTGGT+AGG + chr1_4:63791452-63791471 None:intergenic 20.0%
!!! CTGTATCTTTTTCTTATAAT+TGG + chr1_4:63791456-63791475 None:intergenic 20.0%
!!! AAATAGTTTACCATTTTGAA+GGG + chr1_4:63791889-63791908 None:intergenic 20.0%
!! AACATAAAAACTCTAATCTA+TGG + chr1_4:63792320-63792339 None:intergenic 20.0%
!! AAATATTTGTATAGGTACAT+TGG - chr1_4:63792431-63792450 Msa0177020:CDS 20.0%
! TAACATAATAACACTGTGAA+GGG + chr1_4:63789367-63789386 None:intergenic 25.0%
! ATAACATAATAACACTGTGA+AGG + chr1_4:63789368-63789387 None:intergenic 25.0%
! TTTGATGTGTTTATAGGTTT+CGG + chr1_4:63789485-63789504 None:intergenic 25.0%
!!! AATTTTGTTATTGGATGAAG+TGG - chr1_4:63789704-63789723 Msa0177020:CDS 25.0%
! GTGATGAAAATGAATTAAAC+TGG - chr1_4:63789819-63789838 Msa0177020:CDS 25.0%
! ATGAAAATGAATTAAACTGG+AGG - chr1_4:63789822-63789841 Msa0177020:CDS 25.0%
!!! TTTTCAATTAGTGTTGTTCA+AGG - chr1_4:63789846-63789865 Msa0177020:CDS 25.0%
!! TTTCAATTAGTGTTGTTCAA+GGG - chr1_4:63789847-63789866 Msa0177020:CDS 25.0%
! CAACATGTATTTGAATACTA+CGG + chr1_4:63790003-63790022 None:intergenic 25.0%
! GAATTCTAAGCTTGATTAAT+AGG - chr1_4:63790031-63790050 Msa0177020:intron 25.0%
!!! TATATTTTCACTTTTGAACC+AGG - chr1_4:63790146-63790165 Msa0177020:intron 25.0%
! ATGTAAGTTAAGGAGTAAAA+TGG - chr1_4:63790249-63790268 Msa0177020:intron 25.0%
! TAAGGAGTAAAATGGATATA+TGG - chr1_4:63790257-63790276 Msa0177020:intron 25.0%
! AAGGAGTAAAATGGATATAT+GGG - chr1_4:63790258-63790277 Msa0177020:intron 25.0%
! CAAAGTTAACATCACAAATT+AGG + chr1_4:63790298-63790317 None:intergenic 25.0%
!! CTAATTTGTGATGTTAACTT+TGG - chr1_4:63790296-63790315 Msa0177020:intron 25.0%
! TCTAATGGAAATGAATATTC+AGG + chr1_4:63790476-63790495 None:intergenic 25.0%
! CTTGATCAAACTTTCTTATT+TGG - chr1_4:63790596-63790615 Msa0177020:intron 25.0%
! AAAAGTTGACAACAGTATAT+AGG + chr1_4:63790802-63790821 None:intergenic 25.0%
! AAAACTTAAAAGCAATCTAG+AGG - chr1_4:63791075-63791094 Msa0177020:intron 25.0%
! AAACTTAAAAGCAATCTAGA+GGG - chr1_4:63791076-63791095 Msa0177020:intron 25.0%
! AGATGACTTGAAAATTACAT+GGG + chr1_4:63791175-63791194 None:intergenic 25.0%
!!! ACAAACTACTTTTTATCTAG+AGG - chr1_4:63791217-63791236 Msa0177020:CDS 25.0%
! TGCATCAAAAGACAAAATAA+GGG + chr1_4:63791514-63791533 None:intergenic 25.0%
! ATGCATCAAAAGACAAAATA+AGG + chr1_4:63791515-63791534 None:intergenic 25.0%
! ATTTAATGTAGAGTCGTATT+TGG - chr1_4:63791576-63791595 Msa0177020:intron 25.0%
! TTTAATGTAGAGTCGTATTT+GGG - chr1_4:63791577-63791596 Msa0177020:intron 25.0%
! CTTAATGCTATAACTTTGAT+AGG + chr1_4:63791607-63791626 None:intergenic 25.0%
! ATCAAAGTTATAGCATTAAG+CGG - chr1_4:63791607-63791626 Msa0177020:intron 25.0%
!!! TTCTGTTTTAAACAAGTGAA+AGG + chr1_4:63791767-63791786 None:intergenic 25.0%
!! CAAATAGTTTACCATTTTGA+AGG + chr1_4:63791890-63791909 None:intergenic 25.0%
! TATAAAAACTATTGTAGGAC+TGG - chr1_4:63791997-63792016 Msa0177020:intron 25.0%
! AATTGCATACATATCAAATG+TGG - chr1_4:63792020-63792039 Msa0177020:intron 25.0%
! AGAGAAAAATTTAGACAGAA+AGG - chr1_4:63792048-63792067 Msa0177020:intron 25.0%
! TTTCAAATCTATAAAGGTTC+CGG - chr1_4:63792191-63792210 Msa0177020:intron 25.0%
!! AAGAAAAAGTGTAGTAAGAT+GGG - chr1_4:63792362-63792381 Msa0177020:CDS 25.0%
! CAAGGTAGAAATATTTGTAT+AGG - chr1_4:63792423-63792442 Msa0177020:CDS 25.0%
! CTTCATTTAGATATGAACTT+AGG + chr1_4:63792471-63792490 None:intergenic 25.0%
! TGAAGAATTGAAGCTTATAA+CGG - chr1_4:63792486-63792505 Msa0177020:exon 25.0%
AATCAACTACTTTACCATCT+TGG - chr1_4:63789534-63789553 Msa0177020:three_prime_UTR 30.0%
ATCAACTACTTTACCATCTT+GGG - chr1_4:63789535-63789554 Msa0177020:three_prime_UTR 30.0%
AAAGAGAATTCATGAGATGA+AGG + chr1_4:63789566-63789585 None:intergenic 30.0%
AAAAAGTTACCTGATTGAGA+GGG + chr1_4:63789596-63789615 None:intergenic 30.0%
TCTAAGCTTGATTAATAGGA+AGG - chr1_4:63790035-63790054 Msa0177020:intron 30.0%
TACTCCTTAACTTACATAGA+TGG + chr1_4:63790246-63790265 None:intergenic 30.0%
AGGAGTAAAATGGATATATG+GGG - chr1_4:63790259-63790278 Msa0177020:intron 30.0%
TTTGTGATGTTAACTTTGGT+AGG - chr1_4:63790300-63790319 Msa0177020:intron 30.0%
TTGGTAGGAACTTAAAGTTA+TGG - chr1_4:63790315-63790334 Msa0177020:intron 30.0%
GAACTTAAAGTTATGGTGTT+TGG - chr1_4:63790322-63790341 Msa0177020:intron 30.0%
! TTCCATTAGATTTTGTGTTG+AGG - chr1_4:63790486-63790505 Msa0177020:intron 30.0%
ATCCTCAACACAAAATCTAA+TGG + chr1_4:63790491-63790510 None:intergenic 30.0%
! ATTAGATTTTGTGTTGAGGA+TGG - chr1_4:63790490-63790509 Msa0177020:intron 30.0%
ATCAAGTGAATTGCCAATAA+CGG + chr1_4:63790582-63790601 None:intergenic 30.0%
TCTGAATCTGAATTTATGAC+AGG - chr1_4:63790769-63790788 Msa0177020:intron 30.0%
TTGAATCAAACACACACTTA+CGG + chr1_4:63790857-63790876 None:intergenic 30.0%
TAAGTGTGTGTTTGATTCAA+TGG - chr1_4:63790857-63790876 Msa0177020:intron 30.0%
ATGTTTGAATGGTTTATGTC+TGG - chr1_4:63790948-63790967 Msa0177020:intron 30.0%
CAGATGACTTGAAAATTACA+TGG + chr1_4:63791176-63791195 None:intergenic 30.0%
TCTACATTAAATGCACTTTG+AGG + chr1_4:63791568-63791587 None:intergenic 30.0%
! TGTGTTTCTAACTATGTACT+AGG - chr1_4:63791908-63791927 Msa0177020:intron 30.0%
ATGTAGATTACTCATGTTAC+TGG - chr1_4:63791943-63791962 Msa0177020:intron 30.0%
GAAAGGAATAGCTAAACAAT+TGG - chr1_4:63792065-63792084 Msa0177020:intron 30.0%
GCAAGGTTTCAAATCTATAA+AGG - chr1_4:63792185-63792204 Msa0177020:intron 30.0%
TTCAAATCTATAAAGGTTCC+GGG - chr1_4:63792192-63792211 Msa0177020:intron 30.0%
ATGAAGTTGAATTTCACATC+TGG + chr1_4:63792249-63792268 None:intergenic 30.0%
! GAAGAAAAAGTGTAGTAAGA+TGG - chr1_4:63792361-63792380 Msa0177020:CDS 30.0%
GAAAAAGTTACCTGATTGAG+AGG + chr1_4:63789597-63789616 None:intergenic 35.0%
!! AGATCGGTTTGTTGAATTTG+TGG - chr1_4:63789670-63789689 Msa0177020:CDS 35.0%
CATCATCAGCTAGCAAAAAT+TGG + chr1_4:63789751-63789770 None:intergenic 35.0%
ATTTCTCAGAAGACAAGTTG+AGG + chr1_4:63789799-63789818 None:intergenic 35.0%
ACAATTGGCAATGCTATTGT+TGG - chr1_4:63789918-63789937 Msa0177020:intron 35.0%
TACTCATAGTTCCTGATAAG+TGG - chr1_4:63789945-63789964 Msa0177020:intron 35.0%
ACTCATAGTTCCTGATAAGT+GGG - chr1_4:63789946-63789965 Msa0177020:intron 35.0%
ATAAGTGGGTAGGTTTAGTT+AGG - chr1_4:63789960-63789979 Msa0177020:intron 35.0%
TGATGCTTGATTGCGAAATT+TGG + chr1_4:63790102-63790121 None:intergenic 35.0%
CTAGCCATCTATGTAAGTTA+AGG - chr1_4:63790239-63790258 Msa0177020:intron 35.0%
AAAATGGATATATGGGGTGT+TGG - chr1_4:63790265-63790284 Msa0177020:intron 35.0%
AAGTTATGGTGTTTGGATGT+AGG - chr1_4:63790329-63790348 Msa0177020:intron 35.0%
GAACAAATCAACAACTTGAC+TGG + chr1_4:63790366-63790385 None:intergenic 35.0%
AAGTGAAGACTTCAAGATTG+CGG - chr1_4:63790619-63790638 Msa0177020:intron 35.0%
CTGAATTTATGACAGGAATC+TGG - chr1_4:63790776-63790795 Msa0177020:intron 35.0%
TTAAAAGCAATCTAGAGGGT+TGG - chr1_4:63791080-63791099 Msa0177020:intron 35.0%
ACATGGGAATGAAAAGTAAG+CGG + chr1_4:63791159-63791178 None:intergenic 35.0%
GAGGAAAGTTAAAACAAGAC+AGG + chr1_4:63791382-63791401 None:intergenic 35.0%
! CATTTTCTTATACACGAGAC+TGG + chr1_4:63791414-63791433 None:intergenic 35.0%
!! GGTAACACTTGCTGTTTATA+TGG + chr1_4:63791543-63791562 None:intergenic 35.0%
! CATTAAATGCACTTTGAGGA+TGG + chr1_4:63791564-63791583 None:intergenic 35.0%
TCTCTTCATATTGATCACTG+AGG - chr1_4:63791794-63791813 Msa0177020:intron 35.0%
AGGAATAGCTAAACAATTGG+TGG - chr1_4:63792068-63792087 Msa0177020:intron 35.0%
TAAATCGCAGTGTAATGCAA+TGG + chr1_4:63792133-63792152 None:intergenic 35.0%
TTTCTACCTTGCAATTCCAA+GGG + chr1_4:63792414-63792433 None:intergenic 35.0%
ATTTCTACCTTGCAATTCCA+AGG + chr1_4:63792415-63792434 None:intergenic 35.0%
TATAGGTTTCGGAGATACTG+AGG + chr1_4:63789474-63789493 None:intergenic 40.0%
TTTCTTACTCCCTCTCAATC+AGG - chr1_4:63789584-63789603 Msa0177020:CDS 40.0%
! CAATTAGTGTTGTTCAAGGG+AGG - chr1_4:63789850-63789869 Msa0177020:intron 40.0%
ATAGTTCCTGATAAGTGGGT+AGG - chr1_4:63789950-63789969 Msa0177020:intron 40.0%
ACTAAACCTACCCACTTATC+AGG + chr1_4:63789959-63789978 None:intergenic 40.0%
!! TTAATAGGAAGGTACTGCAG+CGG - chr1_4:63790046-63790065 Msa0177020:intron 40.0%
TAGCTATTAGACGATCAACC+TGG + chr1_4:63790167-63790186 None:intergenic 40.0%
TGGCTAGCGTAAAATTGAGA+GGG + chr1_4:63790226-63790245 None:intergenic 40.0%
ATGGCTAGCGTAAAATTGAG+AGG + chr1_4:63790227-63790246 None:intergenic 40.0%
TGTTAGAGAGGCAAGAATAG+AGG - chr1_4:63790409-63790428 Msa0177020:intron 40.0%
AGGCAAGAATAGAGGATTGT+TGG - chr1_4:63790417-63790436 Msa0177020:intron 40.0%
GGCAAGAATAGAGGATTGTT+GGG - chr1_4:63790418-63790437 Msa0177020:intron 40.0%
AATAGAGGATTGTTGGGAAG+TGG - chr1_4:63790424-63790443 Msa0177020:intron 40.0%
TGTGTTGAGGATGGATAGAT+TGG - chr1_4:63790499-63790518 Msa0177020:intron 40.0%
GCAGGATTCTCTTTACCAAA+TGG - chr1_4:63790533-63790552 Msa0177020:intron 40.0%
! CAGGTTCTTTTGCAACCATT+TGG + chr1_4:63790551-63790570 None:intergenic 40.0%
AGTGAAGACTTCAAGATTGC+GGG - chr1_4:63790620-63790639 Msa0177020:intron 40.0%
!! TTCAAGATTGCGGGTTTTGA+TGG - chr1_4:63790629-63790648 Msa0177020:intron 40.0%
!! TCAAGATTGCGGGTTTTGAT+GGG - chr1_4:63790630-63790649 Msa0177020:intron 40.0%
TGGGAAATTAAGCCTCAACA+AGG - chr1_4:63790649-63790668 Msa0177020:intron 40.0%
GGGAAATTAAGCCTCAACAA+GGG - chr1_4:63790650-63790669 Msa0177020:intron 40.0%
CAGACTTTCTGCCTAGAAAA+GGG - chr1_4:63790708-63790727 Msa0177020:intron 40.0%
AAACACACACTTACGGAAGA+TGG + chr1_4:63790850-63790869 None:intergenic 40.0%
!! AATCTAGAGGGTTGGTAAGT+TGG - chr1_4:63791088-63791107 Msa0177020:intron 40.0%
!!! TTGGTTTTGCCATCGAGAAA+GGG - chr1_4:63791107-63791126 Msa0177020:intron 40.0%
TAAGTCTAACCCTTTCTCGA+TGG + chr1_4:63791119-63791138 None:intergenic 40.0%
CATGGGAATGAAAAGTAAGC+GGG + chr1_4:63791158-63791177 None:intergenic 40.0%
GCATGTCGATAGTTTCTTTG+TGG - chr1_4:63791730-63791749 Msa0177020:intron 40.0%
ATTGATCACTGAGGCAAGAA+TGG - chr1_4:63791803-63791822 Msa0177020:intron 40.0%
!! CTGAGGCAAGAATGGATTTT+TGG - chr1_4:63791811-63791830 Msa0177020:intron 40.0%
TCCTGCATTACCCTTCAAAA+TGG - chr1_4:63791876-63791895 Msa0177020:intron 40.0%
!! ACCATTTTGAAGGGTAATGC+AGG + chr1_4:63791880-63791899 None:intergenic 40.0%
! AGCTAAACAATTGGTGGCTA+AGG - chr1_4:63792074-63792093 Msa0177020:intron 40.0%
AGAATCACAAGCCAGAAGTT+GGG - chr1_4:63792098-63792117 Msa0177020:intron 40.0%
CAGCGACTAAGTTATACCAA+GGG - chr1_4:63792163-63792182 Msa0177020:intron 40.0%
ACTAAGTTATACCAAGGGCA+AGG - chr1_4:63792168-63792187 Msa0177020:intron 40.0%
! TAGATTTGAAACCTTGCCCT+TGG + chr1_4:63792182-63792201 None:intergenic 40.0%
AAATCTATAAAGGTTCCGGG+AGG - chr1_4:63792195-63792214 Msa0177020:intron 40.0%
! TTCACATCTGGAGACGTTTT+TGG + chr1_4:63792237-63792256 None:intergenic 40.0%
AGTAAACCCTTGGAATTGCA+AGG - chr1_4:63792405-63792424 Msa0177020:CDS 40.0%
TATTGACCGCATTTCGTGGA+GGG + chr1_4:63789441-63789460 None:intergenic 45.0%
GAAATGCGGTCAATACCACT+TGG - chr1_4:63789446-63789465 Msa0177020:three_prime_UTR 45.0%
GATGAAGGTGAAACCCAAGA+TGG + chr1_4:63789551-63789570 None:intergenic 45.0%
! TAGTGTTGTTCAAGGGAGGT+AGG - chr1_4:63789854-63789873 Msa0177020:intron 45.0%
GGCTAGCGTAAAATTGAGAG+GGG + chr1_4:63790225-63790244 None:intergenic 45.0%
TCCTGAGATCACTGTTAGAG+AGG - chr1_4:63790397-63790416 Msa0177020:intron 45.0%
GTTGAGGATGGATAGATTGG+TGG - chr1_4:63790502-63790521 Msa0177020:intron 45.0%
! AGATTGGTGGCTATGTTAGC+AGG - chr1_4:63790515-63790534 Msa0177020:intron 45.0%
TGGTTGCAAAAGAACCTGTC+TGG - chr1_4:63790553-63790572 Msa0177020:intron 45.0%
AAGCCTCAACAAGGGATATG+TGG - chr1_4:63790658-63790677 Msa0177020:intron 45.0%
GCAGACTTTCTGCCTAGAAA+AGG - chr1_4:63790707-63790726 Msa0177020:intron 45.0%
!!! GTTGGTTTTGCCATCGAGAA+AGG - chr1_4:63791106-63791125 Msa0177020:intron 45.0%
GTTAAGGCAAGTCTCGAATC+TGG + chr1_4:63791306-63791325 None:intergenic 45.0%
ATAAATGTTACTCCCTGCCC+TGG + chr1_4:63791648-63791667 None:intergenic 45.0%
CAGAATCACAAGCCAGAAGT+TGG - chr1_4:63792097-63792116 Msa0177020:intron 45.0%
GAATCACAAGCCAGAAGTTG+GGG - chr1_4:63792099-63792118 Msa0177020:intron 45.0%
TGGTATAACTTAGTCGCTGC+AGG + chr1_4:63792162-63792181 None:intergenic 45.0%
GCAGCGACTAAGTTATACCA+AGG - chr1_4:63792162-63792181 Msa0177020:intron 45.0%
!!! TCTGGAGACGTTTTTGGTTG+AGG + chr1_4:63792231-63792250 None:intergenic 45.0%
GACGTGTGTAAGTAAACCCT+TGG - chr1_4:63792395-63792414 Msa0177020:CDS 45.0%
AGACAACCCTCCACGAAATG+CGG - chr1_4:63789432-63789451 Msa0177020:three_prime_UTR 50.0%
! GTATTGACCGCATTTCGTGG+AGG + chr1_4:63789442-63789461 None:intergenic 50.0%
!! GTGGTATTGACCGCATTTCG+TGG + chr1_4:63789445-63789464 None:intergenic 50.0%
GGAGATACTGAGGTTCCAAG+TGG + chr1_4:63789464-63789483 None:intergenic 50.0%
GCCTCTCTAACAGTGATCTC+AGG + chr1_4:63790401-63790420 None:intergenic 50.0%
ACCTGTCTGGTTGCCGTTAT+TGG - chr1_4:63790566-63790585 Msa0177020:intron 50.0%
CAGCCACATATCCCTTGTTG+AGG + chr1_4:63790664-63790683 None:intergenic 50.0%
CTCAACAAGGGATATGTGGC+TGG - chr1_4:63790662-63790681 Msa0177020:intron 50.0%
GGTCTCATCTTCTTCGACCA+GGG - chr1_4:63791628-63791647 Msa0177020:intron 50.0%
CGCAGTGTAATGCAATGGCA+CGG + chr1_4:63792128-63792147 None:intergenic 50.0%
GCCAATAACGGCAACCAGAC+AGG + chr1_4:63790570-63790589 None:intergenic 55.0%
ACTCACCTTCTCTGTCGCAG+CGG + chr1_4:63790734-63790753 None:intergenic 55.0%
! ACGAGACTGGAGAGAGTGTG+AGG + chr1_4:63791401-63791420 None:intergenic 55.0%
CGGTCTCATCTTCTTCGACC+AGG - chr1_4:63791627-63791646 Msa0177020:intron 55.0%
TCATCTTCTTCGACCAGGGC+AGG - chr1_4:63791632-63791651 Msa0177020:intron 55.0%
CATCTTCTTCGACCAGGGCA+GGG - chr1_4:63791633-63791652 Msa0177020:intron 55.0%
! TGTCGCAGCGGCCCTTTTCT+AGG + chr1_4:63790722-63790741 None:intergenic 60.0%
AGGTTCCGGGAGGAGCTAAC+TGG - chr1_4:63792205-63792224 Msa0177020:intron 60.0%
TGAGGCCAGTTAGCTCCTCC+CGG + chr1_4:63792213-63792232 None:intergenic 60.0%
AAGGGCCGCTGCGACAGAGA+AGG - chr1_4:63790726-63790745 Msa0177020:intron 65.0%
GGCACGGCATCCCCAACTTC+TGG + chr1_4:63792112-63792131 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 63789359 63792523 63789359 ID=Msa0177020;Name=Msa0177020
chr1_4 mRNA 63789359 63792523 63789359 ID=Msa0177020-mRNA-1;Parent=Msa0177020;Name=Msa0177020-mRNA-1;_AED=0.16;_eAED=0.16;_QI=27|1|1|1|1|1|3|221|301
chr1_4 exon 63789359 63789868 63789359 ID=Msa0177020-mRNA-1:exon:20717;Parent=Msa0177020-mRNA-1
chr1_4 exon 63791135 63791531 63791135 ID=Msa0177020-mRNA-1:exon:20716;Parent=Msa0177020-mRNA-1
chr1_4 exon 63792277 63792523 63792277 ID=Msa0177020-mRNA-1:exon:20715;Parent=Msa0177020-mRNA-1
chr1_4 five_prime_UTR 63792497 63792523 63792497 ID=Msa0177020-mRNA-1:five_prime_utr;Parent=Msa0177020-mRNA-1
chr1_4 CDS 63792277 63792496 63792277 ID=Msa0177020-mRNA-1:cds;Parent=Msa0177020-mRNA-1
chr1_4 CDS 63791135 63791531 63791135 ID=Msa0177020-mRNA-1:cds;Parent=Msa0177020-mRNA-1
chr1_4 CDS 63789580 63789868 63789580 ID=Msa0177020-mRNA-1:cds;Parent=Msa0177020-mRNA-1
chr1_4 three_prime_UTR 63789359 63789579 63789359 ID=Msa0177020-mRNA-1:three_prime_utr;Parent=Msa0177020-mRNA-1
Gene Sequence

>Msa0177020

ATGACTCTTGTAAGCAACAACAACAACACTCTTTCTTTGAGCTCAAAGACAACCCTCCACGAAATGCGGTCAATACCACTTGGAACCTCAGTATCTCCGAAACCTATAAACACATCAAAAATTTCATCTTTTAATACTTATTTTAAGAAATCAACTACTTTACCATCTTGGGTTTCACCTTCATCTCATGAATTCTCTTTTCTTACTCCCTCTCAATCAGGATTATGCAGAGCCAGTCAAGTTGTTGATTTGTTCTCAACTGTGTCTCCTGAGATCACTGTTAGAGAGGCAAGAATAGAGGATTGTTGGGAAGTGGCAGAGACTCACTGCAGCTCTTTCTTTCCTGAATATTCATTTCCATTAGATTTTGTGTTGAGGATGGATAGATTGGTGGCTATGTTAGCAGGATTCTCTTTACCAAATGGTTGCAAAAGAACCTGTCTGGTTGCCGTTATTGGCAATTCACTTGATCAAACTTTCTTATTTGGAAGTGAAGACTTCAAGATTGCGGGTTTTGATGGGAAATTAAGCCTCAACAAGGGATATGTGGCTGGCATATTAACAGTAGATACTGTTGCAGACTTTCTGCCTAGAAAAGGGCCGCTGCGACAGAGAAGGACTGGAATTGCATACATATCAAATGTGGCAGTGAGAGAAAAATTTAGACAGAAAGGAATAGCTAAACAATTGGTGGCTAAGGCAGAATCACAAGCCAGAAGTTGGGGATGCCGTGCCATTGCATTACACTGCGATTTACGAAATCCTGCAGCGACTAAGTTATACCAAGGGCAAGGTTTCAAATCTATAAAGGTTCCGGGAGGAGCTAACTGGCCTCAACCAAAAACGTCTCCAGATGTGAAATTCAACTTCATGATGAAGCTTCTCAAGAAATCATCAGTTTCTTAA

Protein sequence

>Msa0177020

MTLVSNNNNTLSLSSKTTLHEMRSIPLGTSVSPKPINTSKISSFNTYFKKSTTLPSWVSPSSHEFSFLTPSQSGLCRASQVVDLFSTVSPEITVREARIEDCWEVAETHCSSFFPEYSFPLDFVLRMDRLVAMLAGFSLPNGCKRTCLVAVIGNSLDQTFLFGSEDFKIAGFDGKLSLNKGYVAGILTVDTVADFLPRKGPLRQRRTGIAYISNVAVREKFRQKGIAKQLVAKAESQARSWGCRAIALHCDLRNPAATKLYQGQGFKSIKVPGGANWPQPKTSPDVKFNFMMKLLKKSSVS*