AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0206040


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0206040 MtrunA17_Chr2g0304641 91.667 348 7 4 1 332 1 342 0.0 636
Msa0206040 MtrunA17_Chr3g0115691 44.062 320 145 6 38 332 31 341 1.76e-83 256
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0206040 AT2G41040.1 66.557 305 84 3 46 332 48 352 3.06e-141 404
Msa0206040 AT1G78140.1 48.110 291 126 6 66 332 65 354 5.84e-84 258

Find 105 sgRNAs with CRISPR-Local

Find 434 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTACAAATGGACCAAATT+TGG 0.159229 2_1:-34112987 None:intergenic
TGATTACTTGCGGCTGAAAA+TGG 0.170168 2_1:+34107085 Msa0206040:five_prime_UTR
CTGGATCTGACAGTGACTTC+TGG 0.199104 2_1:+34108627 Msa0206040:CDS
GCCAAATCTGGAACCTATTC+TGG 0.201318 2_1:+34109687 Msa0206040:CDS
TCCCGAAAATTTGCCAAATC+TGG 0.210877 2_1:+34109675 Msa0206040:CDS
TTGTAAGAGCAGATGTTTCT+AGG 0.235494 2_1:+34109927 Msa0206040:CDS
GAGGTTGGCGTCAAAATTTC+AGG 0.262886 2_1:+34109020 Msa0206040:CDS
TTCAGGCAAAGTGGCTTTCC+TGG 0.278494 2_1:+34109037 Msa0206040:CDS
TCTAGGCTTCCCTTTGAATC+AGG 0.297752 2_1:+34109944 Msa0206040:CDS
TCTTAGTACACGGGTGATTT+CGG 0.316192 2_1:-34112382 None:intergenic
GTTACACTTCATCAACTTCC+TGG 0.317997 2_1:+34112439 Msa0206040:CDS
TCCAGAATAGGTTCCAGATT+TGG 0.318431 2_1:-34109688 None:intergenic
AGAAGCCATAAAACCAAATT+TGG 0.333090 2_1:+34112974 Msa0206040:exon
TCAATGGTTCATAACATATA+GGG 0.366384 2_1:-34108407 None:intergenic
CACTAGCAAAGACGGGTATC+TGG 0.366593 2_1:+34108608 Msa0206040:CDS
TACAGATGTTATTTATAAAT+CGG 0.367282 2_1:-34113188 None:intergenic
AGGCACGAATATTGAACCTT+TGG 0.368132 2_1:-34107323 None:intergenic
AGAAATGAAAAGGTGAAAAC+TGG 0.382522 2_1:+34113090 Msa0206040:three_prime_UTR
ATCAATGGTTCATAACATAT+AGG 0.384751 2_1:-34108408 None:intergenic
TGGATCTGACAGTGACTTCT+GGG 0.394949 2_1:+34108628 Msa0206040:CDS
GGCACGAATATTGAACCTTT+GGG 0.413534 2_1:-34107322 None:intergenic
GACGCCAACCTCTTTCATAT+AGG 0.414654 2_1:-34109009 None:intergenic
ACTTTAGGTCAGCAATATAT+AGG 0.416469 2_1:+34108550 Msa0206040:intron
GAAAGTGGGATTTAGTAAAA+AGG 0.418898 2_1:-34107275 None:intergenic
AATTGTATTTGATTATTAAG+AGG 0.422776 2_1:-34107237 None:intergenic
TTTAAGTACGAAGAAGGATC+AGG 0.436741 2_1:+34108359 Msa0206040:CDS
GATTACTTGCGGCTGAAAAT+GGG 0.442106 2_1:+34107086 Msa0206040:five_prime_UTR
AGAAGTGGTGGAGTATTTGT+TGG 0.446578 2_1:+34112402 Msa0206040:CDS
AACAAATAAAACAACAAATA+CGG 0.446751 2_1:-34113039 None:intergenic
ATCAAATATTCTTGAAGTTG+AGG 0.451966 2_1:+34113283 Msa0206040:three_prime_UTR
AGGTCAGCAATATATAGGTC+TGG 0.454501 2_1:+34108555 Msa0206040:intron
AAGAGTTTACCTCTCTGAAC+AGG 0.467690 2_1:-34112470 None:intergenic
ATTGTATTTGATTATTAAGA+GGG 0.469023 2_1:-34107236 None:intergenic
CAGAGGTCTTCTCTAGGCTA+TGG 0.469989 2_1:+34112853 Msa0206040:intron
ACGAGAATCAATGTTACAAA+TGG 0.470283 2_1:-34112998 None:intergenic
TAGAAACATCTGCTCTTACA+AGG 0.471408 2_1:-34109925 None:intergenic
TTACACTTCATCAACTTCCT+GGG 0.474826 2_1:+34112440 Msa0206040:CDS
TCATAGCATATCTGTCTTGT+GGG 0.476849 2_1:-34113261 None:intergenic
TCTGAACAGGCGTGCAACCC+AGG 0.477280 2_1:-34112457 None:intergenic
ATGTTGAAGTTCAACCAAAT+CGG 0.478110 2_1:+34108661 Msa0206040:CDS
TAGAGCAATTACTCCAGAAT+AGG 0.479967 2_1:-34109700 None:intergenic
TGCCTCCTCTGCTGTTGTTG+TGG 0.483280 2_1:+34107341 Msa0206040:CDS
TATGAACCATTGATAAGAAA+AGG 0.483602 2_1:+34108417 Msa0206040:CDS
GTTTCATTCCTATATGAAAG+AGG 0.483857 2_1:+34109001 Msa0206040:CDS
ATTGTAGTAGAATGGAGAAT+CGG 0.485004 2_1:-34107171 None:intergenic
TAAATATGCCAGAAATGAAA+AGG 0.486163 2_1:+34113080 Msa0206040:three_prime_UTR
ATCATAGCATATCTGTCTTG+TGG 0.486616 2_1:-34113262 None:intergenic
ACTTACAAGTTAAGACCAAC+AGG 0.489542 2_1:-34108441 None:intergenic
TAATGAAATCGTAGCATTGA+CGG 0.490015 2_1:-34109743 None:intergenic
ATCAACTGAACCTGATTCAA+AGG 0.490665 2_1:-34109954 None:intergenic
TCAGGATTTAAGTACGAAGA+AGG 0.495222 2_1:+34108353 Msa0206040:intron
CTTTATAATGCAGTTCAGAA+TGG 0.495463 2_1:+34109584 Msa0206040:intron
AAAACGCATACCTCTTCATC+AGG 0.495802 2_1:-34109061 None:intergenic
GGAGAAGGCGAGGGCGAAAG+TGG 0.497259 2_1:-34107290 None:intergenic
CATTCCTATATGAAAGAGGT+TGG 0.503405 2_1:+34109005 Msa0206040:CDS
GTTGATGTTAGCTGTGGAAG+TGG 0.509512 2_1:+34109645 Msa0206040:CDS
TTTGGGTTTGAGAGCGGAGA+AGG 0.511189 2_1:-34107305 None:intergenic
TTGTAGTAGAATGGAGAATC+GGG 0.520149 2_1:-34107170 None:intergenic
AAGCGGCCATTGTAGTAGAA+TGG 0.520954 2_1:-34107179 None:intergenic
AGCAGCGGTAGTAGCAGAAG+CGG 0.524135 2_1:-34107196 None:intergenic
CTCCACCACTTCTTAGTACA+CGG 0.524333 2_1:-34112392 None:intergenic
AAATCGTACACTAGCAAAGA+CGG 0.529071 2_1:+34108600 Msa0206040:CDS
TATTTGCAGAGGTCTTCTCT+AGG 0.530151 2_1:+34112847 Msa0206040:intron
TTGATAAGAAAAGGTCCTGT+TGG 0.536732 2_1:+34108426 Msa0206040:CDS
CTCCACAACAACAGCAGAGG+AGG 0.537134 2_1:-34107343 None:intergenic
TCTTGTAAAGGTTCACAGGT+TGG 0.538169 2_1:+34113117 Msa0206040:three_prime_UTR
GAGTACTTTGAGCCTGCTAA+AGG 0.538931 2_1:+34109612 Msa0206040:CDS
AGTGTCTTGTAAAGGTTCAC+AGG 0.545589 2_1:+34113113 Msa0206040:three_prime_UTR
GGCTGAAAATGGGACACAGT+GGG 0.546515 2_1:+34107096 Msa0206040:five_prime_UTR
GATTCTCCATTCTACTACAA+TGG 0.548162 2_1:+34107173 Msa0206040:exon
CTTTCCTGGTCCTGATGAAG+AGG 0.548244 2_1:+34109051 Msa0206040:CDS
ACAATCAGACCACCTTTAGC+AGG 0.549004 2_1:-34109624 None:intergenic
CGTCAAAATTTCAGGCAAAG+TGG 0.551579 2_1:+34109028 Msa0206040:CDS
AAAACTGGAGTGTCTTGTAA+AGG 0.553348 2_1:+34113105 Msa0206040:three_prime_UTR
TCAACTGAACCTGATTCAAA+GGG 0.555624 2_1:-34109953 None:intergenic
CAATATATTGAAATATGTAG+TGG 0.562805 2_1:+34113311 Msa0206040:three_prime_UTR
GTTTGAGAGCGGAGAAGGCG+AGG 0.563644 2_1:-34107300 None:intergenic
TTTGATTATTAAGAGGGTGA+AGG 0.565563 2_1:-34107230 None:intergenic
AAAGACCTTTGCACTTCATG+TGG 0.572535 2_1:+34112898 Msa0206040:CDS
TGAAGTGTAACGAAGAAAAG+TGG 0.578444 2_1:-34112427 None:intergenic
TGGGGAAGAAAGAAGCTTGG+CGG 0.585272 2_1:+34107115 Msa0206040:five_prime_UTR
TTTGAGAGCGGAGAAGGCGA+GGG 0.588926 2_1:-34107299 None:intergenic
CTGATTGTTGATGTTAGCTG+TGG 0.588974 2_1:+34109639 Msa0206040:CDS
TTCATATAGGAATGAAACAA+GGG 0.589684 2_1:-34108996 None:intergenic
TGAACCTTTGGGTTTGAGAG+CGG 0.595270 2_1:-34107311 None:intergenic
GAGAAGGCGAGGGCGAAAGT+GGG 0.600598 2_1:-34107289 None:intergenic
AATCGTACACTAGCAAAGAC+GGG 0.601636 2_1:+34108601 Msa0206040:CDS
TGTTGTTGTGGAGTCTCCGT+CGG 0.604285 2_1:+34107353 Msa0206040:CDS
CATACCTCTTCATCAGGACC+AGG 0.614511 2_1:-34109055 None:intergenic
TACTTTGAGCCTGCTAAAGG+TGG 0.614743 2_1:+34109615 Msa0206040:CDS
AGAAACATCTGCTCTTACAA+GGG 0.617587 2_1:-34109924 None:intergenic
TTCTCCGCTCTCAAACCCAA+AGG 0.617708 2_1:+34107307 Msa0206040:CDS
TTTCATATAGGAATGAAACA+AGG 0.621014 2_1:-34108997 None:intergenic
TTAAGTACGAAGAAGGATCA+GGG 0.623876 2_1:+34108360 Msa0206040:CDS
AAGGAAGAAATGAGAAGCAG+CGG 0.625762 2_1:-34107211 None:intergenic
ATCACCCGTGTACTAAGAAG+TGG 0.637175 2_1:+34112387 Msa0206040:CDS
TAAGACCACATGAAGTGCAA+AGG 0.637387 2_1:-34112903 None:intergenic
CAGTGGGGAAGAAAGAAGCT+TGG 0.637931 2_1:+34107112 Msa0206040:five_prime_UTR
ACCCGTGTACTAAGAAGTGG+TGG 0.640111 2_1:+34112390 Msa0206040:CDS
TCCACCACTTCTTAGTACAC+GGG 0.645948 2_1:-34112391 None:intergenic
CGGCTGAAAATGGGACACAG+TGG 0.646024 2_1:+34107095 Msa0206040:five_prime_UTR
AGACTCCACAACAACAGCAG+AGG 0.656848 2_1:-34107346 None:intergenic
GCTGAAAATGGGACACAGTG+GGG 0.668207 2_1:+34107097 Msa0206040:five_prime_UTR
TCATATAGGAATGAAACAAG+GGG 0.670366 2_1:-34108995 None:intergenic
GGTTGCACGCCTGTTCAGAG+AGG 0.704688 2_1:+34112461 Msa0206040:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAAAAAAGTTGATATATT+TGG - chr2_1:34108008-34108027 None:intergenic 10.0%
!!! AGATTTCTAAATTTATTTTA+GGG - chr2_1:34110760-34110779 None:intergenic 10.0%
!!! TATTTTTAAAACATTTTGTA+TGG - chr2_1:34110788-34110807 None:intergenic 10.0%
!!! TATTATTTTTTTGTAAAACT+TGG - chr2_1:34112098-34112117 None:intergenic 10.0%
!! TATTAATATCAATTTGATAA+GGG - chr2_1:34112622-34112641 None:intergenic 10.0%
!! ATTGTATTTGATTATTAAGA+GGG - chr2_1:34107239-34107258 None:intergenic 15.0%
!! AATTGTATTTGATTATTAAG+AGG - chr2_1:34107240-34107259 None:intergenic 15.0%
!!! TAAGCTTATATTTTTTTTTG+TGG + chr2_1:34107433-34107452 Msa0206040:intron 15.0%
!! GAAGAAAATTGATATATTTA+GGG + chr2_1:34107789-34107808 Msa0206040:intron 15.0%
!! TGAGTTAAATTGTTAATTAA+CGG - chr2_1:34108323-34108342 None:intergenic 15.0%
!!! ACAAAAAAACTTTTATTGAA+CGG - chr2_1:34109367-34109386 None:intergenic 15.0%
!! TAAATTCAAAAATCAAGTAA+AGG - chr2_1:34109807-34109826 None:intergenic 15.0%
!!! TTAAAGTTTTCATAAGATTT+GGG - chr2_1:34110329-34110348 None:intergenic 15.0%
!!! TTTAAAGTTTTCATAAGATT+TGG - chr2_1:34110330-34110349 None:intergenic 15.0%
!!! CAGATTTCTAAATTTATTTT+AGG - chr2_1:34110761-34110780 None:intergenic 15.0%
!! CTAAAATAAATTTAGAAATC+TGG + chr2_1:34110759-34110778 Msa0206040:intron 15.0%
!! AATTTCAAATCTATGTATTA+AGG - chr2_1:34112249-34112268 None:intergenic 15.0%
!! CTATTAATATCAATTTGATA+AGG - chr2_1:34112623-34112642 None:intergenic 15.0%
!! AACAAATAAAACAACAAATA+CGG - chr2_1:34113042-34113061 None:intergenic 15.0%
!!! TACAGATGTTATTTATAAAT+CGG - chr2_1:34113191-34113210 None:intergenic 15.0%
!! AAAATTATAGTTTATACCGA+CGG - chr2_1:34107372-34107391 None:intergenic 20.0%
!!! TCATTTTCTCTATTTAAACT+TGG + chr2_1:34107391-34107410 Msa0206040:intron 20.0%
!! TGTTAACTGTTACATAATTA+AGG + chr2_1:34107575-34107594 Msa0206040:intron 20.0%
!! AAACTAAATTTAAACCACTT+AGG - chr2_1:34107625-34107644 None:intergenic 20.0%
!! CGAAGAAAATTGATATATTT+AGG + chr2_1:34107788-34107807 Msa0206040:intron 20.0%
!! TTTGAAAGAATTCAAGATAT+TGG + chr2_1:34108240-34108259 Msa0206040:intron 20.0%
!!! TTTAATGATTTTGCAACTTT+AGG + chr2_1:34108535-34108554 Msa0206040:intron 20.0%
!! TGGAAAAATGGATATTTAAA+AGG - chr2_1:34108844-34108863 None:intergenic 20.0%
!! TCAACAAATAATTGGAAAAA+TGG - chr2_1:34108856-34108875 None:intergenic 20.0%
!!! ATTTTTCCAATTATTTGTTG+AGG + chr2_1:34108855-34108874 Msa0206040:intron 20.0%
!!! GTAGTTTTTTTTTTTATGAG+TGG + chr2_1:34109187-34109206 Msa0206040:intron 20.0%
!!! CAAAAAAACTTTTATTGAAC+GGG - chr2_1:34109366-34109385 None:intergenic 20.0%
!! TGTTATTAATTAAGCTCAAA+AGG - chr2_1:34109496-34109515 None:intergenic 20.0%
!!! CTTGATTTTTGAATTTATTG+CGG + chr2_1:34109810-34109829 Msa0206040:intron 20.0%
!! ACATTAAATTCATAATTCGT+TGG - chr2_1:34109836-34109855 None:intergenic 20.0%
!! TAAAAGCTTTCATAAGATTT+GGG - chr2_1:34110275-34110294 None:intergenic 20.0%
!! ATGATTTATGAATGATTCAT+GGG - chr2_1:34110298-34110317 None:intergenic 20.0%
!! TATGATTTATGAATGATTCA+TGG - chr2_1:34110299-34110318 None:intergenic 20.0%
!!! AATTTATTTTAGGGCATATT+GGG - chr2_1:34110751-34110770 None:intergenic 20.0%
!!! AAATTTATTTTAGGGCATAT+TGG - chr2_1:34110752-34110771 None:intergenic 20.0%
!! TTTCAACTAAAATCAAATAG+CGG + chr2_1:34110824-34110843 Msa0206040:intron 20.0%
!! TTGAAAATTCTTTGCATTAA+AGG + chr2_1:34111056-34111075 Msa0206040:intron 20.0%
!! AACTATCATGCTAATTAATT+AGG - chr2_1:34111125-34111144 None:intergenic 20.0%
!!! TTCTGTTTTATAATATTGTC+CGG + chr2_1:34111406-34111425 Msa0206040:intron 20.0%
!!! TCAAGTAATATTTTGTATTG+CGG + chr2_1:34111608-34111627 Msa0206040:intron 20.0%
!! CAAATCAACAAATATAATTG+TGG - chr2_1:34111669-34111688 None:intergenic 20.0%
!! AAAATAATAATGTAACGTGT+AGG + chr2_1:34112109-34112128 Msa0206040:intron 20.0%
!! AAATCTATGTATTAAGGAAA+TGG - chr2_1:34112243-34112262 None:intergenic 20.0%
!!! AAATTATTTTCATGTCAATG+TGG + chr2_1:34112264-34112283 Msa0206040:intron 20.0%
!! AAATGTAAATTACATGGAAA+AGG - chr2_1:34112293-34112312 None:intergenic 20.0%
!! AAACAGAAATGTAAATTACA+TGG - chr2_1:34112299-34112318 None:intergenic 20.0%
!! TGTTTAACACTATTTAAATG+AGG + chr2_1:34112314-34112333 Msa0206040:intron 20.0%
!! GTTTAACACTATTTAAATGA+GGG + chr2_1:34112315-34112334 Msa0206040:intron 20.0%
!! ATCTTTAAATCATCTTGAAT+CGG - chr2_1:34112822-34112841 None:intergenic 20.0%
!!! GAAGTCTTTTATTATGTTTA+CGG + chr2_1:34112948-34112967 Msa0206040:CDS 20.0%
!!! GCTTATATTTTTTTTTGTGG+TGG + chr2_1:34107436-34107455 Msa0206040:intron 25.0%
!!! TTAAATTTAGTTTGCCTAAG+TGG + chr2_1:34107632-34107651 Msa0206040:intron 25.0%
! CAACTAAATTTAAACCACTT+AGG - chr2_1:34107649-34107668 None:intergenic 25.0%
! ATCGTTACTCTTAAAACTTA+AGG + chr2_1:34107676-34107695 Msa0206040:intron 25.0%
!!! CGGATTTTAGAATTTGAATA+GGG - chr2_1:34107850-34107869 None:intergenic 25.0%
!!! TCGGATTTTAGAATTTGAAT+AGG - chr2_1:34107851-34107870 None:intergenic 25.0%
! TTATATAATCCGAAGTGTAT+AGG + chr2_1:34107922-34107941 Msa0206040:intron 25.0%
! TATATAATCCGAAGTGTATA+GGG + chr2_1:34107923-34107942 Msa0206040:intron 25.0%
! TCTATATTTAGTCCAAAATC+CGG + chr2_1:34107981-34108000 Msa0206040:intron 25.0%
!!! AAAAGTTGATATATTTGGTC+CGG - chr2_1:34108003-34108022 None:intergenic 25.0%
!!! TTTTTGCTTATGTTTTAGAC+CGG + chr2_1:34108032-34108051 Msa0206040:intron 25.0%
!!! ATTTAGTTTGTAAGTAGTTC+CGG - chr2_1:34108054-34108073 None:intergenic 25.0%
!!! GATTTGTTAGTTTATTCATG+AGG + chr2_1:34108175-34108194 Msa0206040:intron 25.0%
! TCAATGGTTCATAACATATA+GGG - chr2_1:34108410-34108429 None:intergenic 25.0%
! ATCAATGGTTCATAACATAT+AGG - chr2_1:34108411-34108430 None:intergenic 25.0%
! TATGAACCATTGATAAGAAA+AGG + chr2_1:34108417-34108436 Msa0206040:CDS 25.0%
!!! TCTTTTTGTCTCTAAAATCA+CGG + chr2_1:34108498-34108517 Msa0206040:intron 25.0%
! ATACAAAATAGATTGTTACG+TGG + chr2_1:34108704-34108723 Msa0206040:intron 25.0%
! AAAGGATATTGTACAAATAC+TGG - chr2_1:34108826-34108845 None:intergenic 25.0%
! AAATGTCCTCAACAAATAAT+TGG - chr2_1:34108864-34108883 None:intergenic 25.0%
!!! TATAATTTAGTTCTTCTGCA+TGG + chr2_1:34108917-34108936 Msa0206040:intron 25.0%
! TATTTAAGAACTTCATCAAG+TGG - chr2_1:34108948-34108967 None:intergenic 25.0%
! TTCATATAGGAATGAAACAA+GGG - chr2_1:34108999-34109018 None:intergenic 25.0%
! TTTCATATAGGAATGAAACA+AGG - chr2_1:34109000-34109019 None:intergenic 25.0%
! ATAATCGGTTAGAAGAATAT+AGG + chr2_1:34109135-34109154 Msa0206040:intron 25.0%
! TAATCGGTTAGAAGAATATA+GGG + chr2_1:34109136-34109155 Msa0206040:intron 25.0%
!!! TTTTTTTTTTATGAGTGGCA+AGG + chr2_1:34109192-34109211 Msa0206040:intron 25.0%
!! AGTCGATAATTTGTATAAGT+AGG + chr2_1:34109230-34109249 Msa0206040:intron 25.0%
!! GTCGATAATTTGTATAAGTA+GGG + chr2_1:34109231-34109250 Msa0206040:intron 25.0%
!! TCGATAATTTGTATAAGTAG+GGG + chr2_1:34109232-34109251 Msa0206040:intron 25.0%
! ATTCAAAAATCAAGTAAAGG+AGG - chr2_1:34109804-34109823 None:intergenic 25.0%
!! AGTAATATGTCTTAGTTTGA+TGG + chr2_1:34110031-34110050 Msa0206040:intron 25.0%
! TCAACAAAGTTATCAAATAG+CGG - chr2_1:34110160-34110179 None:intergenic 25.0%
! GTAAAAGCTTTCATAAGATT+TGG - chr2_1:34110276-34110295 None:intergenic 25.0%
!!! ATTTATTTTAGGGCATATTG+GGG - chr2_1:34110750-34110769 None:intergenic 25.0%
! TTAGGTTCACATATTTATTC+CGG - chr2_1:34111428-34111447 None:intergenic 25.0%
! AAATATGTGAACCTAATACA+AGG + chr2_1:34111432-34111451 Msa0206040:intron 25.0%
! AGATCACGTTAAATAAGAAA+TGG + chr2_1:34111516-34111535 Msa0206040:intron 25.0%
! GATCACGTTAAATAAGAAAT+GGG + chr2_1:34111517-34111536 Msa0206040:intron 25.0%
!! ATTATTTGGTGAATTTCATG+CGG - chr2_1:34111562-34111581 None:intergenic 25.0%
! ACACACTCATTACTATTATT+TGG - chr2_1:34111576-34111595 None:intergenic 25.0%
! TCAACAAATATAATTGTGGA+GGG - chr2_1:34111665-34111684 None:intergenic 25.0%
! ATCAACAAATATAATTGTGG+AGG - chr2_1:34111666-34111685 None:intergenic 25.0%
!! TTTTTGTAAAACTTGGTATC+CGG - chr2_1:34112091-34112110 None:intergenic 25.0%
!!! GTACATGTTTTGAAAAACTA+GGG - chr2_1:34112210-34112229 None:intergenic 25.0%
!!! AGTACATGTTTTGAAAAACT+AGG - chr2_1:34112211-34112230 None:intergenic 25.0%
!!! TTTTTCAAAACATGTACTCA+TGG + chr2_1:34112213-34112232 Msa0206040:intron 25.0%
!! TTTTCAAAACATGTACTCAT+GGG + chr2_1:34112214-34112233 Msa0206040:intron 25.0%
! GTCAAATTTCAACTTCTTAA+AGG + chr2_1:34112356-34112375 Msa0206040:intron 25.0%
!! AATTGATAACTCACAACAAA+AGG - chr2_1:34112579-34112598 None:intergenic 25.0%
!!! AAAGATCTTTTTATTTGCAG+AGG + chr2_1:34112836-34112855 Msa0206040:intron 25.0%
! TAAATATGCCAGAAATGAAA+AGG + chr2_1:34113080-34113099 Msa0206040:three_prime_UTR 25.0%
! TATGTGCAAAAATAGTGATT+TGG + chr2_1:34113217-34113236 Msa0206040:three_prime_UTR 25.0%
! ATCAAATATTCTTGAAGTTG+AGG + chr2_1:34113283-34113302 Msa0206040:three_prime_UTR 25.0%
ATTGTAGTAGAATGGAGAAT+CGG - chr2_1:34107174-34107193 None:intergenic 30.0%
TTTGATTATTAAGAGGGTGA+AGG - chr2_1:34107233-34107252 None:intergenic 30.0%
GAAAGTGGGATTTAGTAAAA+AGG - chr2_1:34107278-34107297 None:intergenic 30.0%
!!! ATATTTTTTTTTGTGGTGGC+CGG + chr2_1:34107440-34107459 Msa0206040:intron 30.0%
GACAATCCATAATATATGCA+AGG - chr2_1:34107479-34107498 None:intergenic 30.0%
GTGAGCTTAATTTAATTGGT+AGG - chr2_1:34107501-34107520 None:intergenic 30.0%
CATCGTGAGCTTAATTTAAT+TGG - chr2_1:34107505-34107524 None:intergenic 30.0%
! TGTTTGCTTATATTTGAGAC+CGG - chr2_1:34107763-34107782 None:intergenic 30.0%
CAAGACACGTTAAAACATTT+CGG - chr2_1:34107870-34107889 None:intergenic 30.0%
!!! GTGTCTTGGAGTTTTTTATA+GGG + chr2_1:34107882-34107901 Msa0206040:intron 30.0%
TTCGGATTATATAATCCGAA+CGG - chr2_1:34107916-34107935 None:intergenic 30.0%
! TTAACTCAAACTTTTCCTTC+AGG + chr2_1:34108335-34108354 Msa0206040:intron 30.0%
ACTTTAGGTCAGCAATATAT+AGG + chr2_1:34108550-34108569 Msa0206040:intron 30.0%
ATGTTGAAGTTCAACCAAAT+CGG + chr2_1:34108661-34108680 Msa0206040:CDS 30.0%
TGAAAAGTTACTATCACATG+AGG + chr2_1:34108794-34108813 Msa0206040:intron 30.0%
TCATATAGGAATGAAACAAG+GGG - chr2_1:34108998-34109017 None:intergenic 30.0%
GTTTCATTCCTATATGAAAG+AGG + chr2_1:34109001-34109020 Msa0206040:CDS 30.0%
TAGGGGAAATAAGAATAGAA+GGG + chr2_1:34109249-34109268 Msa0206040:intron 30.0%
ATGACTAATCCTTTACAGAA+AGG + chr2_1:34109301-34109320 Msa0206040:intron 30.0%
TGACTAATCCTTTACAGAAA+GGG + chr2_1:34109302-34109321 Msa0206040:intron 30.0%
! GTGAATCTAGAGCAAATAAA+AGG - chr2_1:34109399-34109418 None:intergenic 30.0%
! GATTCACAACAAATCCATTT+TGG + chr2_1:34109412-34109431 Msa0206040:intron 30.0%
GGTACAAAAAGAGAGATATA+TGG - chr2_1:34109475-34109494 None:intergenic 30.0%
CTTTATAATGCAGTTCAGAA+TGG + chr2_1:34109584-34109603 Msa0206040:intron 30.0%
! TTCCAGATTTGGCAAATTTT+CGG - chr2_1:34109680-34109699 None:intergenic 30.0%
! TAATGAAATCGTAGCATTGA+CGG - chr2_1:34109746-34109765 None:intergenic 30.0%
! ATATTACTTACAGCATTGGA+GGG - chr2_1:34110019-34110038 None:intergenic 30.0%
AGACATATTACTTACAGCAT+TGG - chr2_1:34110023-34110042 None:intergenic 30.0%
TTGATGGAAACCATAATCTT+TGG + chr2_1:34110047-34110066 Msa0206040:intron 30.0%
TGATGGAAACCATAATCTTT+GGG + chr2_1:34110048-34110067 Msa0206040:intron 30.0%
TAGTAGTCAATTGTGGATTT+CGG + chr2_1:34110080-34110099 Msa0206040:intron 30.0%
TAAGACTTTCGATACTATGT+TGG - chr2_1:34110357-34110376 None:intergenic 30.0%
TTCAACATAGTAGTCAATCT+CGG + chr2_1:34110384-34110403 Msa0206040:intron 30.0%
TATAGTGGTATGACAAATAG+TGG + chr2_1:34110455-34110474 Msa0206040:intron 30.0%
TGCGAAAAATCAAAAGAAAG+AGG + chr2_1:34110626-34110645 Msa0206040:intron 30.0%
CAAGAGAAACTATAAAACAG+AGG + chr2_1:34110671-34110690 Msa0206040:intron 30.0%
AAAAGAACAGAGAAACCATA+CGG + chr2_1:34110700-34110719 Msa0206040:intron 30.0%
! ATTAGCATGATAGTTTGTGT+TGG + chr2_1:34111130-34111149 Msa0206040:intron 30.0%
!! ATAGTTTGTGTTGGTCATTT+TGG + chr2_1:34111139-34111158 Msa0206040:intron 30.0%
!! TAGTTTGTGTTGGTCATTTT+GGG + chr2_1:34111140-34111159 Msa0206040:intron 30.0%
!! CGATTTGCTTTTGTAAGAAT+CGG - chr2_1:34111266-34111285 None:intergenic 30.0%
ATGACTGTATTGCACATTAT+AGG - chr2_1:34111696-34111715 None:intergenic 30.0%
CAGATTTATGTATTCACGTT+AGG + chr2_1:34111773-34111792 Msa0206040:intron 30.0%
TGTGTAGTCATGTATTGTAT+AGG + chr2_1:34111862-34111881 Msa0206040:intron 30.0%
ACAATTCTCATACGAAAACT+GGG - chr2_1:34112176-34112195 None:intergenic 30.0%
TACAATTCTCATACGAAAAC+TGG - chr2_1:34112177-34112196 None:intergenic 30.0%
CAATAATGAACATCTTCAGA+AGG - chr2_1:34112550-34112569 None:intergenic 30.0%
AGAAGCCATAAAACCAAATT+TGG + chr2_1:34112974-34112993 Msa0206040:exon 30.0%
!!! ATGGACCAAATTTGGTTTTA+TGG - chr2_1:34112982-34113001 None:intergenic 30.0%
TGTTACAAATGGACCAAATT+TGG - chr2_1:34112990-34113009 None:intergenic 30.0%
ACGAGAATCAATGTTACAAA+TGG - chr2_1:34113001-34113020 None:intergenic 30.0%
! AGTTTTCACCTTTTCATTTC+TGG - chr2_1:34113091-34113110 None:intergenic 30.0%
AGAAATGAAAAGGTGAAAAC+TGG + chr2_1:34113090-34113109 Msa0206040:three_prime_UTR 30.0%
!! TGATTTGGAATTCTGTTTTG+TGG + chr2_1:34113232-34113251 Msa0206040:three_prime_UTR 30.0%
TTGTAGTAGAATGGAGAATC+GGG - chr2_1:34107173-34107192 None:intergenic 35.0%
GATTCTCCATTCTACTACAA+TGG + chr2_1:34107173-34107192 Msa0206040:exon 35.0%
GGGATTTAGTAAAAAGGTGA+GGG - chr2_1:34107272-34107291 None:intergenic 35.0%
TGGGATTTAGTAAAAAGGTG+AGG - chr2_1:34107273-34107292 None:intergenic 35.0%
!!! TATTTTTTTTTGTGGTGGCC+GGG + chr2_1:34107441-34107460 Msa0206040:intron 35.0%
ACCTGACCTTGCATATATTA+TGG + chr2_1:34107470-34107489 Msa0206040:intron 35.0%
TCCATAATATATGCAAGGTC+AGG - chr2_1:34107474-34107493 None:intergenic 35.0%
! CTAGAAGTTTTTCCTTCCTT+TGG - chr2_1:34107723-34107742 None:intergenic 35.0%
!!! CGAAATGTTTTAACGTGTCT+TGG + chr2_1:34107868-34107887 Msa0206040:intron 35.0%
!!! CGTGTCTTGGAGTTTTTTAT+AGG + chr2_1:34107881-34107900 Msa0206040:intron 35.0%
ATCAATAGGGTGGGAAAAAA+AGG + chr2_1:34107956-34107975 Msa0206040:intron 35.0%
! GATATATTTGGTCCGGATTT+TGG - chr2_1:34107996-34108015 None:intergenic 35.0%
TAACAAATCTTTAGCCCCAA+GGG - chr2_1:34108164-34108183 None:intergenic 35.0%
TCTTCGTACTTAAATCCTGA+AGG - chr2_1:34108353-34108372 None:intergenic 35.0%
TCAGGATTTAAGTACGAAGA+AGG + chr2_1:34108353-34108372 Msa0206040:intron 35.0%
TTTAAGTACGAAGAAGGATC+AGG + chr2_1:34108359-34108378 Msa0206040:CDS 35.0%
TTAAGTACGAAGAAGGATCA+GGG + chr2_1:34108360-34108379 Msa0206040:CDS 35.0%
! ACAGGACCTTTTCTTATCAA+TGG - chr2_1:34108426-34108445 None:intergenic 35.0%
TTGATAAGAAAAGGTCCTGT+TGG + chr2_1:34108426-34108445 Msa0206040:CDS 35.0%
ACTTACAAGTTAAGACCAAC+AGG - chr2_1:34108444-34108463 None:intergenic 35.0%
!! GTTGGTCTTAACTTGTAAGT+TGG + chr2_1:34108444-34108463 Msa0206040:intron 35.0%
!! AAGTTGGCTTTATATGCATG+AGG + chr2_1:34108460-34108479 Msa0206040:intron 35.0%
!! AGTTGGCTTTATATGCATGA+GGG + chr2_1:34108461-34108480 Msa0206040:intron 35.0%
AAATCGTACACTAGCAAAGA+CGG + chr2_1:34108600-34108619 Msa0206040:CDS 35.0%
! CAAATCGGACTGAACTTTTT+CGG + chr2_1:34108676-34108695 Msa0206040:CDS 35.0%
AGTATCACGAGATCATCATA+CGG - chr2_1:34108742-34108761 None:intergenic 35.0%
TCTGTGTCTAAACCTTTATC+AGG + chr2_1:34108969-34108988 Msa0206040:intron 35.0%
CATTCCTATATGAAAGAGGT+TGG + chr2_1:34109005-34109024 Msa0206040:CDS 35.0%
GTACATTACAACTACAGTTC+TGG - chr2_1:34109090-34109109 None:intergenic 35.0%
TTGTAATGTACCCATACTTG+AGG + chr2_1:34109099-34109118 Msa0206040:intron 35.0%
TACCAAAACACCTCAAGTAT+GGG - chr2_1:34109112-34109131 None:intergenic 35.0%
!!! GGTGTTTTGGTAGACATAAT+CGG + chr2_1:34109120-34109139 Msa0206040:intron 35.0%
GTAGGGGAAATAAGAATAGA+AGG + chr2_1:34109248-34109267 Msa0206040:intron 35.0%
AGGGGAAATAAGAATAGAAG+GGG + chr2_1:34109250-34109269 Msa0206040:intron 35.0%
GACTAATCCTTTACAGAAAG+GGG + chr2_1:34109303-34109322 Msa0206040:intron 35.0%
GTGTGAGTCATTAACCAAAA+TGG - chr2_1:34109429-34109448 None:intergenic 35.0%
! TCCAGATTTGGCAAATTTTC+GGG - chr2_1:34109679-34109698 None:intergenic 35.0%
TAGAGCAATTACTCCAGAAT+AGG - chr2_1:34109703-34109722 None:intergenic 35.0%
TAAAGGAGGAAAACAATACG+TGG - chr2_1:34109790-34109809 None:intergenic 35.0%
ATCAGATATCCTCATGCAAA+GGG - chr2_1:34109862-34109881 None:intergenic 35.0%
AATCAGATATCCTCATGCAA+AGG - chr2_1:34109863-34109882 None:intergenic 35.0%
AGAAACATCTGCTCTTACAA+GGG - chr2_1:34109927-34109946 None:intergenic 35.0%
TAGAAACATCTGCTCTTACA+AGG - chr2_1:34109928-34109947 None:intergenic 35.0%
TTGTAAGAGCAGATGTTTCT+AGG + chr2_1:34109927-34109946 Msa0206040:CDS 35.0%
TCAACTGAACCTGATTCAAA+GGG - chr2_1:34109956-34109975 None:intergenic 35.0%
ATCAACTGAACCTGATTCAA+AGG - chr2_1:34109957-34109976 None:intergenic 35.0%
! CATATTACTTACAGCATTGG+AGG - chr2_1:34110020-34110039 None:intergenic 35.0%
! GAAACCATAATCTTTGGGTT+GGG + chr2_1:34110053-34110072 Msa0206040:intron 35.0%
!! AAACCATAATCTTTGGGTTG+GGG + chr2_1:34110054-34110073 Msa0206040:intron 35.0%
! ATCCCGCTATAGCATTTTTA+GGG - chr2_1:34110120-34110139 None:intergenic 35.0%
! TATCCCGCTATAGCATTTTT+AGG - chr2_1:34110121-34110140 None:intergenic 35.0%
TGCCTACACAACAATGATAT+CGG - chr2_1:34111022-34111041 None:intergenic 35.0%
AAGTTCTACACATCAAGACA+TGG - chr2_1:34111199-34111218 None:intergenic 35.0%
GTTAAATAAGAAATGGGCCT+AGG + chr2_1:34111523-34111542 Msa0206040:intron 35.0%
TCAATCTCTATCTTCGAATG+AGG + chr2_1:34111831-34111850 Msa0206040:intron 35.0%
AACCATGACTTTGTGTAAGT+GGG - chr2_1:34111893-34111912 None:intergenic 35.0%
!! CATTGCTCTGGCTTTAAATA+GGG + chr2_1:34112017-34112036 Msa0206040:intron 35.0%
!! ATTGCTCTGGCTTTAAATAG+GGG + chr2_1:34112018-34112037 Msa0206040:intron 35.0%
CAATTCTCATACGAAAACTG+GGG - chr2_1:34112175-34112194 None:intergenic 35.0%
TGAAGTGTAACGAAGAAAAG+TGG - chr2_1:34112430-34112449 None:intergenic 35.0%
TTACACTTCATCAACTTCCT+GGG + chr2_1:34112440-34112459 Msa0206040:CDS 35.0%
ATAACTCACAACAAAAGGCA+AGG - chr2_1:34112574-34112593 None:intergenic 35.0%
TCATCTTGAATCGGATTCAA+GGG - chr2_1:34112813-34112832 None:intergenic 35.0%
ATCATCTTGAATCGGATTCA+AGG - chr2_1:34112814-34112833 None:intergenic 35.0%
! AAAACTGGAGTGTCTTGTAA+AGG + chr2_1:34113105-34113124 Msa0206040:three_prime_UTR 35.0%
TCATAGCATATCTGTCTTGT+GGG - chr2_1:34113264-34113283 None:intergenic 35.0%
ATCATAGCATATCTGTCTTG+TGG - chr2_1:34113265-34113284 None:intergenic 35.0%
TGATTACTTGCGGCTGAAAA+TGG + chr2_1:34107085-34107104 Msa0206040:five_prime_UTR 40.0%
GATTACTTGCGGCTGAAAAT+GGG + chr2_1:34107086-34107105 Msa0206040:five_prime_UTR 40.0%
AAGGAAGAAATGAGAAGCAG+CGG - chr2_1:34107214-34107233 None:intergenic 40.0%
!! TAAAAAGGTGAGGGCATTTG+GGG - chr2_1:34107263-34107282 None:intergenic 40.0%
!! GTAAAAAGGTGAGGGCATTT+GGG - chr2_1:34107264-34107283 None:intergenic 40.0%
!! AGTAAAAAGGTGAGGGCATT+TGG - chr2_1:34107265-34107284 None:intergenic 40.0%
GGCACGAATATTGAACCTTT+GGG - chr2_1:34107325-34107344 None:intergenic 40.0%
AGGCACGAATATTGAACCTT+TGG - chr2_1:34107326-34107345 None:intergenic 40.0%
!!! ATTTTTTTTTGTGGTGGCCG+GGG + chr2_1:34107442-34107461 Msa0206040:intron 40.0%
CTTGATTGTTCTTGCCTAAG+TGG + chr2_1:34107608-34107627 Msa0206040:intron 40.0%
! AGTTTTTCCTTCCTTTGGAC+TGG - chr2_1:34107718-34107737 None:intergenic 40.0%
AGCTTAGTAAGTACTCCATC+CGG + chr2_1:34107741-34107760 Msa0206040:intron 40.0%
! TGCTTATATTTGAGACCGGA+TGG - chr2_1:34107759-34107778 None:intergenic 40.0%
! TATAGGGTGTTTATGCCGTT+CGG + chr2_1:34107898-34107917 Msa0206040:intron 40.0%
! TCCACTAGTTCTCTTAGAGT+GGG - chr2_1:34108086-34108105 None:intergenic 40.0%
CAACATGTTGAATGCAAGTC+TGG + chr2_1:34108118-34108137 Msa0206040:intron 40.0%
AACAAATCTTTAGCCCCAAG+GGG - chr2_1:34108163-34108182 None:intergenic 40.0%
CTAACAAATCTTTAGCCCCA+AGG - chr2_1:34108165-34108184 None:intergenic 40.0%
AGGTCAGCAATATATAGGTC+TGG + chr2_1:34108555-34108574 Msa0206040:intron 40.0%
AATCGTACACTAGCAAAGAC+GGG + chr2_1:34108601-34108620 Msa0206040:CDS 40.0%
CGAAAAAGTTCAGTCCGATT+TGG - chr2_1:34108678-34108697 None:intergenic 40.0%
GTATCACGAGATCATCATAC+GGG - chr2_1:34108741-34108760 None:intergenic 40.0%
CGTCAAAATTTCAGGCAAAG+TGG + chr2_1:34109028-34109047 Msa0206040:CDS 40.0%
AAAACGCATACCTCTTCATC+AGG - chr2_1:34109064-34109083 None:intergenic 40.0%
!! TACCCATACTTGAGGTGTTT+TGG + chr2_1:34109107-34109126 Msa0206040:intron 40.0%
CTACCAAAACACCTCAAGTA+TGG - chr2_1:34109113-34109132 None:intergenic 40.0%
TCTGTTCGTTTGAGAGTTTG+TGG + chr2_1:34109277-34109296 Msa0206040:intron 40.0%
AGGATATCCCCTTTCTGTAA+AGG - chr2_1:34109313-34109332 None:intergenic 40.0%
TTTACAGAAAGGGGATATCC+TGG + chr2_1:34109312-34109331 Msa0206040:intron 40.0%
CTGATTGTTGATGTTAGCTG+TGG + chr2_1:34109639-34109658 Msa0206040:CDS 40.0%
TCCCGAAAATTTGCCAAATC+TGG + chr2_1:34109675-34109694 Msa0206040:CDS 40.0%
TCCAGAATAGGTTCCAGATT+TGG - chr2_1:34109691-34109710 None:intergenic 40.0%
TAATGTTTCCCCTTTGCATG+AGG + chr2_1:34109850-34109869 Msa0206040:intron 40.0%
TCAGATATCCTCATGCAAAG+GGG - chr2_1:34109861-34109880 None:intergenic 40.0%
GGAAACCATAATCTTTGGGT+TGG + chr2_1:34110052-34110071 Msa0206040:intron 40.0%
!! AACCATAATCTTTGGGTTGG+GGG + chr2_1:34110055-34110074 Msa0206040:intron 40.0%
!!! CGCTATAGCATTTTTAGGGT+CGG - chr2_1:34110116-34110135 None:intergenic 40.0%
CGACCCTAAAAATGCTATAG+CGG + chr2_1:34110114-34110133 Msa0206040:intron 40.0%
GACCCTAAAAATGCTATAGC+GGG + chr2_1:34110115-34110134 Msa0206040:intron 40.0%
TAGTAGTCAATCTCGGATAG+TGG + chr2_1:34110391-34110410 Msa0206040:intron 40.0%
AAATCAAATAGCGGCTGAAG+CGG + chr2_1:34110833-34110852 Msa0206040:intron 40.0%
GACCGATATCATTGTTGTGT+AGG + chr2_1:34111017-34111036 Msa0206040:intron 40.0%
TTGCTAGCACTCCTTGTATT+AGG - chr2_1:34111446-34111465 None:intergenic 40.0%
AACCCACTTACACAAAGTCA+TGG + chr2_1:34111888-34111907 Msa0206040:intron 40.0%
CAACCATGACTTTGTGTAAG+TGG - chr2_1:34111894-34111913 None:intergenic 40.0%
CACTTACACAAAGTCATGGT+TGG + chr2_1:34111892-34111911 Msa0206040:intron 40.0%
GAGTATCAAACCTGAGATCT+TGG - chr2_1:34111961-34111980 None:intergenic 40.0%
TAACCCACCAAAATTGGCAT+CGG - chr2_1:34111985-34112004 None:intergenic 40.0%
! ATGGACTAACCCACCAAAAT+TGG - chr2_1:34111991-34112010 None:intergenic 40.0%
!! GCATTGCTCTGGCTTTAAAT+AGG + chr2_1:34112016-34112035 Msa0206040:intron 40.0%
TCTTAGTACACGGGTGATTT+CGG - chr2_1:34112385-34112404 None:intergenic 40.0%
! AGAAGTGGTGGAGTATTTGT+TGG + chr2_1:34112402-34112421 Msa0206040:CDS 40.0%
GTTACACTTCATCAACTTCC+TGG + chr2_1:34112439-34112458 Msa0206040:CDS 40.0%
AAGAGTTTACCTCTCTGAAC+AGG - chr2_1:34112473-34112492 None:intergenic 40.0%
GACTTTATGACCTCAAGAGA+CGG - chr2_1:34112688-34112707 None:intergenic 40.0%
CTAAGATGACACCTCATGAA+CGG + chr2_1:34112720-34112739 Msa0206040:intron 40.0%
TAGTTAGTACTCCGTTCATG+AGG - chr2_1:34112734-34112753 None:intergenic 40.0%
TATTTGCAGAGGTCTTCTCT+AGG + chr2_1:34112847-34112866 Msa0206040:intron 40.0%
AAAGACCTTTGCACTTCATG+TGG + chr2_1:34112898-34112917 Msa0206040:CDS 40.0%
TAAGACCACATGAAGTGCAA+AGG - chr2_1:34112906-34112925 None:intergenic 40.0%
AGTGTCTTGTAAAGGTTCAC+AGG + chr2_1:34113113-34113132 Msa0206040:three_prime_UTR 40.0%
TCTTGTAAAGGTTCACAGGT+TGG + chr2_1:34113117-34113136 Msa0206040:three_prime_UTR 40.0%
AAGCGGCCATTGTAGTAGAA+TGG - chr2_1:34107182-34107201 None:intergenic 45.0%
! TGAACCTTTGGGTTTGAGAG+CGG - chr2_1:34107314-34107333 None:intergenic 45.0%
TCAGAGGGTGGGAAAAGTAA+CGG - chr2_1:34107815-34107834 None:intergenic 45.0%
GCACGAGAAATCAATAGGGT+GGG + chr2_1:34107947-34107966 Msa0206040:intron 45.0%
! CCACTAGTTCTCTTAGAGTG+GGG - chr2_1:34108085-34108104 None:intergenic 45.0%
! CTCCACTAGTTCTCTTAGAG+TGG - chr2_1:34108087-34108106 None:intergenic 45.0%
! CACTCTAAGAGAACTAGTGG+AGG + chr2_1:34108085-34108104 Msa0206040:intron 45.0%
CTCTATTAGACCAACCCCTT+GGG + chr2_1:34108146-34108165 Msa0206040:intron 45.0%
TCTATTAGACCAACCCCTTG+GGG + chr2_1:34108147-34108166 Msa0206040:intron 45.0%
! GGCTTTATATGCATGAGGGA+AGG + chr2_1:34108465-34108484 Msa0206040:intron 45.0%
TGGATCTGACAGTGACTTCT+GGG + chr2_1:34108628-34108647 Msa0206040:CDS 45.0%
AACAAGGGGACTCCTGATAA+AGG - chr2_1:34108984-34109003 None:intergenic 45.0%
GACGCCAACCTCTTTCATAT+AGG - chr2_1:34109012-34109031 None:intergenic 45.0%
GAGGTTGGCGTCAAAATTTC+AGG + chr2_1:34109020-34109039 Msa0206040:CDS 45.0%
GACTCACACACATCACACAA+AGG + chr2_1:34109440-34109459 Msa0206040:intron 45.0%
ACATCACACAAAGGAAGCTG+CGG + chr2_1:34109449-34109468 Msa0206040:intron 45.0%
GAGTACTTTGAGCCTGCTAA+AGG + chr2_1:34109612-34109631 Msa0206040:CDS 45.0%
TACTTTGAGCCTGCTAAAGG+TGG + chr2_1:34109615-34109634 Msa0206040:CDS 45.0%
ACAATCAGACCACCTTTAGC+AGG - chr2_1:34109627-34109646 None:intergenic 45.0%
GTTGATGTTAGCTGTGGAAG+TGG + chr2_1:34109645-34109664 Msa0206040:CDS 45.0%
! GCCAAATCTGGAACCTATTC+TGG + chr2_1:34109687-34109706 Msa0206040:CDS 45.0%
TCTAGGCTTCCCTTTGAATC+AGG + chr2_1:34109944-34109963 Msa0206040:CDS 45.0%
! TCAGTTGATGCAGTTCATGC+TGG + chr2_1:34109968-34109987 Msa0206040:intron 45.0%
ACCATACGGCAGAGTCAATT+TGG + chr2_1:34110714-34110733 Msa0206040:intron 45.0%
! ACCAAATTGACTCTGCCGTA+TGG - chr2_1:34110718-34110737 None:intergenic 45.0%
ACCCGCATAGTAGTCAATAG+CGG - chr2_1:34110983-34111002 None:intergenic 45.0%
ATGGGCCTAGGCTATTTACT+TGG + chr2_1:34111535-34111554 Msa0206040:intron 45.0%
ATCAAACCTGAGATCTTGGC+AGG - chr2_1:34111957-34111976 None:intergenic 45.0%
! ATACTCCCCGATGCCAATTT+TGG + chr2_1:34111975-34111994 Msa0206040:intron 45.0%
AACCCACCAAAATTGGCATC+GGG - chr2_1:34111984-34112003 None:intergenic 45.0%
AATCCAACCATCCACTTGCA+GGG - chr2_1:34112044-34112063 None:intergenic 45.0%
AAAACTTGGTATCCGGCACA+AGG - chr2_1:34112084-34112103 None:intergenic 45.0%
TCTCATACGAAAACTGGGGT+CGG - chr2_1:34112171-34112190 None:intergenic 45.0%
ATCACCCGTGTACTAAGAAG+TGG + chr2_1:34112387-34112406 Msa0206040:CDS 45.0%
TCCACCACTTCTTAGTACAC+GGG - chr2_1:34112394-34112413 None:intergenic 45.0%
CTCCACCACTTCTTAGTACA+CGG - chr2_1:34112395-34112414 None:intergenic 45.0%
AGGCACAATGTTGACAACTC+AGG - chr2_1:34112530-34112549 None:intergenic 45.0%
GGCTGAAAATGGGACACAGT+GGG + chr2_1:34107096-34107115 Msa0206040:five_prime_UTR 50.0%
GCTGAAAATGGGACACAGTG+GGG + chr2_1:34107097-34107116 Msa0206040:five_prime_UTR 50.0%
CAGTGGGGAAGAAAGAAGCT+TGG + chr2_1:34107112-34107131 Msa0206040:five_prime_UTR 50.0%
TGGGGAAGAAAGAAGCTTGG+CGG + chr2_1:34107115-34107134 Msa0206040:five_prime_UTR 50.0%
! TTTGGGTTTGAGAGCGGAGA+AGG - chr2_1:34107308-34107327 None:intergenic 50.0%
TTCTCCGCTCTCAAACCCAA+AGG + chr2_1:34107307-34107326 Msa0206040:CDS 50.0%
AGACTCCACAACAACAGCAG+AGG - chr2_1:34107349-34107368 None:intergenic 50.0%
TGTTGTTGTGGAGTCTCCGT+CGG + chr2_1:34107353-34107372 Msa0206040:CDS 50.0%
CTGATGACACTCCAGTCCAA+AGG + chr2_1:34107704-34107723 Msa0206040:intron 50.0%
TGACACTCCAGTCCAAAGGA+AGG + chr2_1:34107708-34107727 Msa0206040:intron 50.0%
GCACAAGAAACTCAGAGGGT+GGG - chr2_1:34107826-34107845 None:intergenic 50.0%
AGGGCGCACGAGAAATCAAT+AGG + chr2_1:34107942-34107961 Msa0206040:intron 50.0%
GGGCGCACGAGAAATCAATA+GGG + chr2_1:34107943-34107962 Msa0206040:intron 50.0%
CGCACGAGAAATCAATAGGG+TGG + chr2_1:34107946-34107965 Msa0206040:intron 50.0%
! CCCCACTCTAAGAGAACTAG+TGG + chr2_1:34108082-34108101 Msa0206040:intron 50.0%
GCTCTATTAGACCAACCCCT+TGG + chr2_1:34108145-34108164 Msa0206040:intron 50.0%
AATCTTTAGCCCCAAGGGGT+TGG - chr2_1:34108159-34108178 None:intergenic 50.0%
CACTAGCAAAGACGGGTATC+TGG + chr2_1:34108608-34108627 Msa0206040:CDS 50.0%
CTGGATCTGACAGTGACTTC+TGG + chr2_1:34108627-34108646 Msa0206040:CDS 50.0%
TTCAGGCAAAGTGGCTTTCC+TGG + chr2_1:34109037-34109056 Msa0206040:CDS 50.0%
CTTTCCTGGTCCTGATGAAG+AGG + chr2_1:34109051-34109070 Msa0206040:CDS 50.0%
CATACCTCTTCATCAGGACC+AGG - chr2_1:34109058-34109077 None:intergenic 50.0%
ACAGAAAGGGGATATCCTGG+AGG + chr2_1:34109315-34109334 Msa0206040:intron 50.0%
! CTTACAGCATTGGAGGGAGA+TGG - chr2_1:34110013-34110032 None:intergenic 50.0%
TGCCCCCAACCCAAAGATTA+TGG - chr2_1:34110060-34110079 None:intergenic 50.0%
! GGGGGCATAGTAGTCAATTG+TGG + chr2_1:34110073-34110092 Msa0206040:intron 50.0%
TAGAGGCCGACCTCAAAAGT+GGG + chr2_1:34110418-34110437 Msa0206040:intron 50.0%
TAGTCAATAGCGGCCGATAG+CGG - chr2_1:34110973-34110992 None:intergenic 50.0%
! GGCCGCTATTGACTACTATG+CGG + chr2_1:34110978-34110997 Msa0206040:intron 50.0%
! GCCGCTATTGACTACTATGC+GGG + chr2_1:34110979-34110998 Msa0206040:intron 50.0%
GCGGTCCAAGTAAATAGCCT+AGG - chr2_1:34111543-34111562 None:intergenic 50.0%
! ACACAAAGTCATGGTTGGCC+TGG + chr2_1:34111897-34111916 Msa0206040:intron 50.0%
!! AAAGTCATGGTTGGCCTGGT+GGG + chr2_1:34111901-34111920 Msa0206040:intron 50.0%
!! TCCCCGATGCCAATTTTGGT+GGG + chr2_1:34111979-34111998 Msa0206040:intron 50.0%
ACCCACCAAAATTGGCATCG+GGG - chr2_1:34111983-34112002 None:intergenic 50.0%
!! GTCCATACAGAGCATTGCTC+TGG + chr2_1:34112005-34112024 Msa0206040:intron 50.0%
AGCCAGAGCAATGCTCTGTA+TGG - chr2_1:34112010-34112029 None:intergenic 50.0%
TTAAATAGGGGCCCTGCAAG+TGG + chr2_1:34112030-34112049 Msa0206040:intron 50.0%
CAATCCAACCATCCACTTGC+AGG - chr2_1:34112045-34112064 None:intergenic 50.0%
CTGCAAGTGGATGGTTGGAT+TGG + chr2_1:34112043-34112062 Msa0206040:intron 50.0%
GGTCGGGGAAAGAAATTTGG+AGG - chr2_1:34112154-34112173 None:intergenic 50.0%
TGGGGTCGGGGAAAGAAATT+TGG - chr2_1:34112157-34112176 None:intergenic 50.0%
TCATACGAAAACTGGGGTCG+GGG - chr2_1:34112169-34112188 None:intergenic 50.0%
CTCATACGAAAACTGGGGTC+GGG - chr2_1:34112170-34112189 None:intergenic 50.0%
ACCCGTGTACTAAGAAGTGG+TGG + chr2_1:34112390-34112409 Msa0206040:CDS 50.0%
CAGTGTCTAGTGTCTGAGAG+TGG + chr2_1:34112655-34112674 Msa0206040:intron 50.0%
TGGTTGAACTCCGTCTCTTG+AGG + chr2_1:34112675-34112694 Msa0206040:intron 50.0%
CAGAGGTCTTCTCTAGGCTA+TGG + chr2_1:34112853-34112872 Msa0206040:intron 50.0%
CGGCTGAAAATGGGACACAG+TGG + chr2_1:34107095-34107114 Msa0206040:five_prime_UTR 55.0%
AGCAGCGGTAGTAGCAGAAG+CGG - chr2_1:34107199-34107218 None:intergenic 55.0%
TTTGAGAGCGGAGAAGGCGA+GGG - chr2_1:34107302-34107321 None:intergenic 55.0%
TGCCTCCTCTGCTGTTGTTG+TGG + chr2_1:34107341-34107360 Msa0206040:CDS 55.0%
CTCCACAACAACAGCAGAGG+AGG - chr2_1:34107346-34107365 None:intergenic 55.0%
GCAAGGTCAGGTTCAAACCC+CGG - chr2_1:34107462-34107481 None:intergenic 55.0%
CGCACAAGAAACTCAGAGGG+TGG - chr2_1:34107827-34107846 None:intergenic 55.0%
GGGCGCACAAGAAACTCAGA+GGG - chr2_1:34107830-34107849 None:intergenic 55.0%
AGGGCGCACAAGAAACTCAG+AGG - chr2_1:34107831-34107850 None:intergenic 55.0%
CTCGTGCGCCCTATACACTT+CGG - chr2_1:34107934-34107953 None:intergenic 55.0%
TGCAGAGAGATCTCTCCTCC+AGG - chr2_1:34109333-34109352 None:intergenic 55.0%
!! CTGGTGCTGCTTTGCATTGC+TGG + chr2_1:34109987-34110006 Msa0206040:intron 55.0%
TTGTGGATTTCGGCGCGTAG+CGG + chr2_1:34110090-34110109 Msa0206040:intron 55.0%
! TCTCGGATAGTGGTGCGTAG+AGG + chr2_1:34110401-34110420 Msa0206040:intron 55.0%
GTAGAGGCCGACCTCAAAAG+TGG + chr2_1:34110417-34110436 Msa0206040:intron 55.0%
!!! CGCTCTCCCACTTTTGAGGT+CGG - chr2_1:34110427-34110446 None:intergenic 55.0%
CGACCTCAAAAGTGGGAGAG+CGG + chr2_1:34110425-34110444 Msa0206040:intron 55.0%
GACCTCAAAAGTGGGAGAGC+GGG + chr2_1:34110426-34110445 Msa0206040:intron 55.0%
!! AACCCGCTCTCCCACTTTTG+AGG - chr2_1:34110431-34110450 None:intergenic 55.0%
!! GAGAGCGGGTTAGCGTATAG+TGG + chr2_1:34110440-34110459 Msa0206040:intron 55.0%
! CGAAGCGCTACGCTAATTGG+CGG - chr2_1:34110923-34110942 None:intergenic 55.0%
! CGACGAAGCGCTACGCTAAT+TGG - chr2_1:34110926-34110945 None:intergenic 55.0%
!! CAAAGTCATGGTTGGCCTGG+TGG + chr2_1:34111900-34111919 Msa0206040:intron 55.0%
!! AAGTCATGGTTGGCCTGGTG+GGG + chr2_1:34111902-34111921 Msa0206040:intron 55.0%
! TGGCTTGGGATCTTGGAGTG+TGG + chr2_1:34111926-34111945 Msa0206040:intron 55.0%
GGCTTGGGATCTTGGAGTGT+GGG + chr2_1:34111927-34111946 Msa0206040:intron 55.0%
! CTCCCCGATGCCAATTTTGG+TGG + chr2_1:34111978-34111997 Msa0206040:intron 55.0%
GGCACAAGGATCGATCTGAG+GGG - chr2_1:34112070-34112089 None:intergenic 55.0%
CGGCACAAGGATCGATCTGA+GGG - chr2_1:34112071-34112090 None:intergenic 55.0%
CCTCAGATCGATCCTTGTGC+CGG + chr2_1:34112069-34112088 Msa0206040:intron 55.0%
GAGAAGGCGAGGGCGAAAGT+GGG - chr2_1:34107292-34107311 None:intergenic 60.0%
GTTTGAGAGCGGAGAAGGCG+AGG - chr2_1:34107303-34107322 None:intergenic 60.0%
CAGCTGCTACAGCGGCATAG+CGG - chr2_1:34110876-34110895 None:intergenic 60.0%
GGCAGCTTCAGCTGCTACAG+CGG - chr2_1:34110884-34110903 None:intergenic 60.0%
CTAATTGGCGGTGCGGGATG+AGG - chr2_1:34110911-34110930 None:intergenic 60.0%
GCTACGCTAATTGGCGGTGC+GGG - chr2_1:34110917-34110936 None:intergenic 60.0%
CGCTACGCTAATTGGCGGTG+CGG - chr2_1:34110918-34110937 None:intergenic 60.0%
!! GTGGGGTTGGCTTGGGATCT+TGG + chr2_1:34111919-34111938 Msa0206040:intron 60.0%
GGTGCTCCTGCCAAGATCTC+AGG + chr2_1:34111948-34111967 Msa0206040:intron 60.0%
ATAGGGGCCCTGCAAGTGGA+TGG + chr2_1:34112034-34112053 Msa0206040:intron 60.0%
CCGGCACAAGGATCGATCTG+AGG - chr2_1:34112072-34112091 None:intergenic 60.0%
TCTGAACAGGCGTGCAACCC+AGG - chr2_1:34112460-34112479 None:intergenic 60.0%
GGTTGCACGCCTGTTCAGAG+AGG + chr2_1:34112461-34112480 Msa0206040:CDS 60.0%
GGAGAAGGCGAGGGCGAAAG+TGG - chr2_1:34107293-34107312 None:intergenic 65.0%
TAGCGGAGCGGAGCGGATAG+CGG - chr2_1:34110859-34110878 None:intergenic 65.0%
! GCTACAGCGGCATAGCGGAG+CGG - chr2_1:34110871-34110890 None:intergenic 65.0%
GGCCGCTATAGCGCCGCTAT+CGG + chr2_1:34110957-34110976 Msa0206040:intron 65.0%
! GGCCGATAGCGGCGCTATAG+CGG - chr2_1:34110962-34110981 None:intergenic 65.0%
!! CATGGTTGGCCTGGTGGGGT+TGG + chr2_1:34111906-34111925 Msa0206040:intron 65.0%
!! TTGGCCTGGTGGGGTTGGCT+TGG + chr2_1:34111911-34111930 Msa0206040:intron 65.0%
!! TGGCCTGGTGGGGTTGGCTT+GGG + chr2_1:34111912-34111931 Msa0206040:intron 65.0%
GATCCCAAGCCAACCCCACC+AGG - chr2_1:34111918-34111937 None:intergenic 65.0%
GGGCCCTGCAAGTGGATGGT+TGG + chr2_1:34112038-34112057 Msa0206040:intron 65.0%
! AGCGGCATAGCGGAGCGGAG+CGG - chr2_1:34110866-34110885 None:intergenic 70.0%
GGCGGTGCGGGATGAGGTAG+CGG - chr2_1:34110905-34110924 None:intergenic 70.0%
GCTATAGCGGCCGCGCGTAG+CGG - chr2_1:34110949-34110968 None:intergenic 70.0%
CGCTTCGTCGCCGCTACGCG+CGG + chr2_1:34110936-34110955 Msa0206040:intron 75.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 34107084 34113333 34107084 ID=Msa0206040;Name=Msa0206040
chr2_1 mRNA 34107084 34113333 34107084 ID=Msa0206040-mRNA-1;Parent=Msa0206040;Name=Msa0206040-mRNA-1;_AED=0.06;_eAED=0.06;_QI=108|0.85|0.87|1|0.85|0.87|8|349|332
chr2_1 exon 34107084 34107374 34107084 ID=Msa0206040-mRNA-1:exon:11553;Parent=Msa0206040-mRNA-1
chr2_1 exon 34108357 34108457 34108357 ID=Msa0206040-mRNA-1:exon:11554;Parent=Msa0206040-mRNA-1
chr2_1 exon 34108557 34108697 34108557 ID=Msa0206040-mRNA-1:exon:11555;Parent=Msa0206040-mRNA-1
chr2_1 exon 34108991 34109072 34108991 ID=Msa0206040-mRNA-1:exon:11556;Parent=Msa0206040-mRNA-1
chr2_1 exon 34109597 34109790 34109597 ID=Msa0206040-mRNA-1:exon:11557;Parent=Msa0206040-mRNA-1
chr2_1 exon 34109916 34109979 34109916 ID=Msa0206040-mRNA-1:exon:11558;Parent=Msa0206040-mRNA-1
chr2_1 exon 34112378 34112482 34112378 ID=Msa0206040-mRNA-1:exon:11559;Parent=Msa0206040-mRNA-1
chr2_1 exon 34112856 34113333 34112856 ID=Msa0206040-mRNA-1:exon:11560;Parent=Msa0206040-mRNA-1
chr2_1 five_prime_UTR 34107084 34107191 34107084 ID=Msa0206040-mRNA-1:five_prime_utr;Parent=Msa0206040-mRNA-1
chr2_1 CDS 34107192 34107374 34107192 ID=Msa0206040-mRNA-1:cds;Parent=Msa0206040-mRNA-1
chr2_1 CDS 34108357 34108457 34108357 ID=Msa0206040-mRNA-1:cds;Parent=Msa0206040-mRNA-1
chr2_1 CDS 34108557 34108697 34108557 ID=Msa0206040-mRNA-1:cds;Parent=Msa0206040-mRNA-1
chr2_1 CDS 34108991 34109072 34108991 ID=Msa0206040-mRNA-1:cds;Parent=Msa0206040-mRNA-1
chr2_1 CDS 34109597 34109790 34109597 ID=Msa0206040-mRNA-1:cds;Parent=Msa0206040-mRNA-1
chr2_1 CDS 34109916 34109979 34109916 ID=Msa0206040-mRNA-1:cds;Parent=Msa0206040-mRNA-1
chr2_1 CDS 34112378 34112482 34112378 ID=Msa0206040-mRNA-1:cds;Parent=Msa0206040-mRNA-1
chr2_1 CDS 34112856 34112984 34112856 ID=Msa0206040-mRNA-1:cds;Parent=Msa0206040-mRNA-1
chr2_1 three_prime_UTR 34112985 34113333 34112985 ID=Msa0206040-mRNA-1:three_prime_utr;Parent=Msa0206040-mRNA-1
Gene Sequence

>Msa0206040

ATGGCCGCTTCTGCTACTACCGCTGCTTCTCATTTCTTCCTTCACCCTCTTAATAATCAAATACAATTCCCCAAATGCCCTCACCTTTTTACTAAATCCCACTTTCGCCCTCGCCTTCTCCGCTCTCAAACCCAAAGGTTCAATATTCGTGCCTCCTCTGCTGTTGTTGTGGAGTCTCCGTCGGATTTAAGTACGAAGAAGGATCAGGGAACACAAGTTGACTTATTCGCATGCCCTATATGTTATGAACCATTGATAAGAAAAGGTCCTGTTGGTCTTAACTTGTCAGCAATATATAGGTCTGGTTTCAAGTGTAAGAGATGTCAAAAATCGTACACTAGCAAAGACGGGTATCTGGATCTGACAGTGACTTCTGGGTTGAGAGATTATGTTGAAGTTCAACCAAATCGGACTGAACTTTTTCGGAGTCCCCTTGTTTCATTCCTATATGAAAGAGGTTGGCGTCAAAATTTCAGGCAAAGTGGCTTTCCTGGTCCTGATGAAGAGTTCAGAATGGCTCAAGAGTACTTTGAGCCTGCTAAAGGTGGTCTGATTGTTGATGTTAGCTGTGGAAGTGGTCTATTTTCCCGAAAATTTGCCAAATCTGGAACCTATTCTGGAGTAATTGCTCTAGATTTTTCTGAAAATATGCTCCGTCAATGCTACGATTTCATTAAGAAAGATGACACACTATCAACCACTAATCTTGCCCTTGTAAGAGCAGATGTTTCTAGGCTTCCCTTTGAATCAGGTTCAGTTGATGCAGTTGCCGAAATCACCCGTGTACTAAGAAGTGGTGGAGTATTTGTTGGAACCACTTTTCTTCGTTACACTTCATCAACTTCCTGGGTTGCACGCCTGTTCAGAGAGAGGTCTTCTCTAGGCTATGGCTACTTAACAGAAGAAGAAATTAAAGACCTTTGCACTTCATGTGGTCTTACAAATTACTCATGCAAAATTCAGAAGTCTTTTATTATGTTTACGGCTCAGAAGCCATAA

Protein sequence

>Msa0206040

MAASATTAASHFFLHPLNNQIQFPKCPHLFTKSHFRPRLLRSQTQRFNIRASSAVVVESPSDLSTKKDQGTQVDLFACPICYEPLIRKGPVGLNLSAIYRSGFKCKRCQKSYTSKDGYLDLTVTSGLRDYVEVQPNRTELFRSPLVSFLYERGWRQNFRQSGFPGPDEEFRMAQEYFEPAKGGLIVDVSCGSGLFSRKFAKSGTYSGVIALDFSENMLRQCYDFIKKDDTLSTTNLALVRADVSRLPFESGSVDAVAEITRVLRSGGVFVGTTFLRYTSSTSWVARLFRERSSLGYGYLTEEEIKDLCTSCGLTNYSCKIQKSFIMFTAQKP*