AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1457390


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1457390 MtrunA17_Chr4g0055551 96.053 304 11 1 1 303 1 304 0.0 598
Msa1457390 MtrunA17_Chr1g0207341 41.270 189 109 2 101 287 153 341 8.81e-48 164
Msa1457390 MtrunA17_Chr7g0272191 46.286 175 91 2 112 283 119 293 3.96e-44 153
Msa1457390 MtrunA17_Chr4g0038261 36.975 238 123 5 46 282 5 216 2.46e-40 140
Msa1457390 MtrunA17_Chr4g0056771 37.234 188 110 1 103 290 95 274 6.02e-38 135
Msa1457390 MtrunA17_Chr7g0270061 37.113 194 107 2 98 284 96 281 1.07e-36 133
Msa1457390 MtrunA17_Chr7g0251451 37.778 180 104 1 103 282 79 250 3.06e-36 131
Msa1457390 MtrunA17_Chr1g0194601 36.598 194 108 2 98 284 99 284 4.32e-36 131
Msa1457390 MtrunA17_Chr5g0409311 36.612 183 108 1 103 285 88 262 2.91e-33 124
Msa1457390 MtrunA17_Chr4g0034751 33.880 183 113 1 103 285 99 273 2.26e-31 118
Msa1457390 MtrunA17_Chr4g0015831 29.508 122 78 1 89 210 8 121 4.02e-14 67.8
Msa1457390 MtrunA17_CPg0492721 29.508 122 78 1 89 210 8 121 4.02e-14 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1457390 AT4G17040.1 75.175 286 68 2 20 303 21 305 9.24e-151 425
Msa1457390 AT1G09130.2 46.766 201 100 4 100 297 118 314 9.13e-54 178
Msa1457390 AT1G09130.1 46.766 201 100 4 100 297 118 314 9.13e-54 178
Msa1457390 AT1G09130.3 46.766 201 100 4 100 297 118 314 3.15e-53 178
Msa1457390 AT1G49970.1 48.087 183 93 2 101 281 169 351 3.32e-49 168
Msa1457390 AT5G23140.1 40.761 184 100 2 103 286 48 222 3.14e-43 148
Msa1457390 AT1G12410.1 37.766 188 109 1 103 290 89 268 1.46e-38 137
Msa1457390 AT1G02560.1 33.452 281 167 4 12 284 19 287 2.27e-38 137
Msa1457390 AT5G45390.1 37.222 180 105 1 103 282 79 250 4.18e-35 129
Msa1457390 AT1G66670.1 34.444 180 110 1 103 282 85 256 4.33e-32 121
Msa1457390 AT1G11750.1 32.973 185 116 1 101 285 94 270 2.51e-30 115
Msa1457390 AT1G11750.2 32.973 185 116 1 101 285 112 288 4.12e-30 115
Msa1457390 ATCG00670.1 29.016 193 124 3 90 281 13 193 1.67e-26 103

Find 88 sgRNAs with CRISPR-Local

Find 412 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAGTTTATGTACAGATAAA+TGG 0.194117 tig0038879:+4704 Msa1457390:intergenic
TGATGGGTCTGATAGGGGTT+AGG 0.281995 tig0038879:+6958 Msa1457390:intergenic
AGTTGTTTCTGACCTTAAAA+AGG 0.300292 tig0038879:-949 Msa1457390:CDS
CTCTCTGCGTTGGCAATGCT+TGG 0.303068 tig0038879:-2097 Msa1457390:CDS
GGGAGAGGCAGCCTTACTTT+TGG 0.318790 tig0038879:-2075 Msa1457390:CDS
CACTTGGACTAAAATACTTT+GGG 0.321699 tig0038879:+1114 Msa1457390:intergenic
CCAAGTGAAGCTGTTGAGTA+TGG 0.336233 tig0038879:-1098 Msa1457390:CDS
TCCATCTGTTACAGAGTTGA+TGG 0.354136 tig0038879:-4769 Msa1457390:CDS
GAGGATTTGATGGGTCTGAT+AGG 0.355717 tig0038879:+6951 Msa1457390:intergenic
CAGCCTATTGCGCGGTTTCA+AGG 0.358842 tig0038879:-1900 Msa1457390:CDS
TCACTTGGACTAAAATACTT+TGG 0.371602 tig0038879:+1113 Msa1457390:intergenic
ATCACTAACCTTTGTTGTTC+CGG 0.377807 tig0038879:+4680 Msa1457390:intergenic
AGCGACGAAATCGGTGGAAA+TGG 0.379765 tig0038879:+6917 Msa1457390:intergenic
GAGTTTATGTACAGATAAAT+GGG 0.390251 tig0038879:+4705 Msa1457390:intergenic
GTACAATGAGAGGGGCTCTA+AGG 0.390258 tig0038879:-979 Msa1457390:CDS
TCTCTGCGTTGGCAATGCTT+GGG 0.392552 tig0038879:-2096 Msa1457390:CDS
TGACCTTGAAACCGCGCAAT+AGG 0.407017 tig0038879:+1897 Msa1457390:intergenic
CATGGGTTTGTTTGATAAGA+AGG 0.425617 tig0038879:+7007 Msa1457390:intergenic
AGGATTTGATGGGTCTGATA+GGG 0.433341 tig0038879:+6952 Msa1457390:intergenic
GATGGGTCTGATAGGGGTTA+GGG 0.433564 tig0038879:+6959 Msa1457390:intergenic
AGCAGATTGAAGCTGATATT+CGG 0.440887 tig0038879:-1139 Msa1457390:CDS
TACCTCAACTTCAAGAAAAG+AGG 0.445154 tig0038879:+894 Msa1457390:intergenic
CTTTCAGGGAGGTGAGAAGT+TGG 0.446585 tig0038879:-2968 Msa1457390:intron
GTTTCTGAAAGAGGATTTGA+TGG 0.446685 tig0038879:+6941 Msa1457390:intergenic
CACTAGAGTGAAGACAGAAT+TGG 0.449509 tig0038879:-1841 Msa1457390:intron
TTTCAGGGAGGTGAGAAGTT+GGG 0.452298 tig0038879:-2967 Msa1457390:intron
TTGTTTCATCGTCATATTGA+AGG 0.457683 tig0038879:+4730 Msa1457390:intergenic
TAAAAGAGGAGTCGTTACTA+TGG 0.462951 tig0038879:-6799 Msa1457390:intron
AGTTCCACTAGTAATTTCTC+TGG 0.465833 tig0038879:-6876 Msa1457390:CDS
AAGTTGAGGTAAAGTACATC+TGG 0.466213 tig0038879:-882 Msa1457390:three_prime_UTR
CTTATCATTATAGTTGATGA+TGG 0.470041 tig0038879:+2020 Msa1457390:intergenic
GGCACAGCTTATTTGACCGC+TGG 0.471577 tig0038879:-928 Msa1457390:exon
CCCGCGACGTTTCAAAGCTC+CGG 0.479421 tig0038879:-6825 Msa1457390:CDS
GGATTTGATGGGTCTGATAG+GGG 0.482645 tig0038879:+6953 Msa1457390:intergenic
CGTGGAAGGAGCGACGAAAT+CGG 0.485145 tig0038879:+6908 Msa1457390:intergenic
CCATACTCAACAGCTTCACT+TGG 0.491392 tig0038879:+1098 Msa1457390:intergenic
CATGCAGTCCCTCTTGAGAA+AGG 0.492109 tig0038879:+4864 Msa1457390:intergenic
TACAGGTAAGAAGCTAAGTC+TGG 0.492907 tig0038879:+4828 Msa1457390:intergenic
CGTTGGCAATGCTTGGGGAG+AGG 0.494410 tig0038879:-2090 Msa1457390:CDS
ACCTCAACTTCAAGAAAAGA+GGG 0.500938 tig0038879:+895 Msa1457390:intergenic
GGAAATGGAGTTTCTGAAAG+AGG 0.503787 tig0038879:+6932 Msa1457390:intergenic
GAAGGTGAAAGATGCGTTTG+CGG 0.506086 tig0038879:+7025 Msa1457390:intergenic
TGCACCAGCAGCCAAAAGTA+AGG 0.509782 tig0038879:+2064 Msa1457390:intergenic
CGATTTCGTCGCTCCTTCCA+CGG 0.510311 tig0038879:-6907 Msa1457390:CDS
TTTGAAACGTCGCGGGATTG+AGG 0.512001 tig0038879:+6832 Msa1457390:intergenic
CAAAGCTCCGGCGGTAAAAG+AGG 0.512714 tig0038879:-6813 Msa1457390:CDS
CTTTCTCAAGAGGGACTGCA+TGG 0.514476 tig0038879:-4863 Msa1457390:CDS
ATATCAGCTTCAATCTGCTC+AGG 0.516570 tig0038879:+1143 Msa1457390:intergenic
GCACAGCTTATTTGACCGCT+GGG 0.523713 tig0038879:-927 Msa1457390:exon
GTTAGGGTTCGTGATGAAGA+GGG 0.526254 tig0038879:+6975 Msa1457390:intergenic
GGTTAGGGTTCGTGATGAAG+AGG 0.534675 tig0038879:+6974 Msa1457390:intergenic
GCAGGTGTTGTACAATGAGA+GGG 0.541340 tig0038879:-988 Msa1457390:intron
TGCAGGTGTTGTACAATGAG+AGG 0.548770 tig0038879:-989 Msa1457390:intron
CTCTGCGTTGGCAATGCTTG+GGG 0.548984 tig0038879:-2095 Msa1457390:CDS
CCGGAGCTTTGAAACGTCGC+GGG 0.552666 tig0038879:+6825 Msa1457390:intergenic
TGAAGAGGGTGAAATGAGCA+TGG 0.558343 tig0038879:+6989 Msa1457390:intergenic
CGGGATTGAGGCACGGAGGA+CGG 0.560093 tig0038879:+6844 Msa1457390:intergenic
ATCAACTATAATGATAAGAC+AGG 0.560171 tig0038879:-2015 Msa1457390:intron
TTGCAGTTTATGATTTGATG+AGG 0.568470 tig0038879:-2927 Msa1457390:intron
TAGGTTATTCCTTTCTCAAG+AGG 0.571434 tig0038879:-4873 Msa1457390:CDS
AGGTTATTCCTTTCTCAAGA+GGG 0.573523 tig0038879:-4872 Msa1457390:CDS
GTTTGCGGTTGCAACCTCCA+TGG 0.577625 tig0038879:+7040 Msa1457390:intergenic
TTTCTCAAGAGGGACTGCAT+GGG 0.580047 tig0038879:-4862 Msa1457390:CDS
ACCATCAACTCTGTAACAGA+TGG 0.580533 tig0038879:+4768 Msa1457390:intergenic
TGAACAAAACGAACGAACCA+TGG 0.585494 tig0038879:-7057 Msa1457390:exon
TAAGAAGCTAAGTCTGGTGG+AGG 0.595854 tig0038879:+4834 Msa1457390:intergenic
TAAGGTCAGAAACAACTCCA+TGG 0.601923 tig0038879:+955 Msa1457390:intergenic
ACTAACCTTTGTTGTTCCGG+TGG 0.613992 tig0038879:+4683 Msa1457390:intergenic
AGGTAAGAAGCTAAGTCTGG+TGG 0.621610 tig0038879:+4831 Msa1457390:intergenic
TATCTGTACATAAACTCCAC+CGG 0.621927 tig0038879:-4699 Msa1457390:CDS
GAACTACTGATTGCCGTGGA+AGG 0.625527 tig0038879:+6894 Msa1457390:intergenic
TTTCTGAAAGAGGATTTGAT+GGG 0.625809 tig0038879:+6942 Msa1457390:intergenic
GAGAGGGGCTCTAAGGACCA+TGG 0.632618 tig0038879:-972 Msa1457390:CDS
AAACTCCACCGGAACAACAA+AGG 0.638142 tig0038879:-4688 Msa1457390:intron
GAAGAGGGTGAAATGAGCAT+GGG 0.645982 tig0038879:+6990 Msa1457390:intergenic
AACGTCGCGGGATTGAGGCA+CGG 0.648196 tig0038879:+6837 Msa1457390:intergenic
GTGACCAGAGAAATTACTAG+TGG 0.649718 tig0038879:+6872 Msa1457390:intergenic
TCAATTTGCAGCCTATTGCG+CGG 0.651428 tig0038879:-1908 Msa1457390:intron
CAGGTGTTGTACAATGAGAG+GGG 0.651553 tig0038879:-987 Msa1457390:CDS
AGTGGAACTACTGATTGCCG+TGG 0.654345 tig0038879:+6890 Msa1457390:intergenic
GCCGGAGCTTTGAAACGTCG+CGG 0.654571 tig0038879:+6824 Msa1457390:intergenic
GGAAGGAGCGACGAAATCGG+TGG 0.660421 tig0038879:+6911 Msa1457390:intergenic
TTGATGATGGCAAAGCAGAA+CGG 0.665478 tig0038879:+2033 Msa1457390:intergenic
GCGACGTTTCAAAGCTCCGG+CGG 0.712932 tig0038879:-6822 Msa1457390:CDS
TGAGTATGGAATCATAGACA+AGG 0.714132 tig0038879:-1084 Msa1457390:intron
ACAAAACGAACGAACCATGG+AGG 0.736733 tig0038879:-7054 Msa1457390:exon
GTCGCGGGATTGAGGCACGG+AGG 0.746029 tig0038879:+6840 Msa1457380:intergenic
AGAGGGATTTAACTTCCCAG+CGG 0.759377 tig0038879:+912 Msa1457380:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATGAAATATATACAAAAA+GGG + tig0038879:1607-1626 Msa1457390:intergenic 10.0%
!!! TTTTTGTATATATTTCATAT+GGG - tig0038879:1607-1626 Msa1457390:intron 10.0%
!! AAAAAATCATATTAAGTTAT+GGG + tig0038879:2285-2304 Msa1457390:intergenic 10.0%
!! AAAAAAATCATATTAAGTTA+TGG + tig0038879:2286-2305 Msa1457390:intergenic 10.0%
!! AATAATGAGATAAATAATAA+GGG + tig0038879:2348-2367 Msa1457390:intergenic 10.0%
!! AAATAATGAGATAAATAATA+AGG + tig0038879:2349-2368 Msa1457390:intergenic 10.0%
!!! TTTTGATTTTAAATAAAAAG+AGG + tig0038879:2937-2956 Msa1457390:intergenic 10.0%
!!! AAAAATGTTTTTTTTTTTTG+TGG + tig0038879:3493-3512 Msa1457390:intergenic 10.0%
!! TTAAAAAATGAACTAAAAAA+AGG + tig0038879:4591-4610 Msa1457390:intergenic 10.0%
!! AAAAATGTTAAAGTTATTTA+TGG + tig0038879:4630-4649 Msa1457390:intergenic 10.0%
!! ATAAAATAAAATAAATGACA+GGG + tig0038879:5107-5126 Msa1457390:intergenic 10.0%
!! TAATGTCAAATATTAATTAA+TGG - tig0038879:5700-5719 Msa1457390:intron 10.0%
!! AATCTAATTTAACATAATTA+TGG - tig0038879:6194-6213 Msa1457390:intron 10.0%
!! CATATGAAATATATACAAAA+AGG + tig0038879:1608-1627 Msa1457390:intergenic 15.0%
!!! CTTTTTGTATATATTTCATA+TGG - tig0038879:1606-1625 Msa1457390:intron 15.0%
!!! TATTTCTTGTTTTTGTTTTT+TGG - tig0038879:1631-1650 Msa1457390:intron 15.0%
!! TTAAAATCAAAAACTTTAAC+TGG - tig0038879:2945-2964 Msa1457390:CDS 15.0%
!! AAGTATTATTCTTATGAAAA+AGG + tig0038879:3365-3384 Msa1457390:intergenic 15.0%
!!! TAGAAATTTTTGAAAAAAAG+TGG + tig0038879:4446-4465 Msa1457390:intergenic 15.0%
!!! TTTTTCAAAAATTTCTAATG+AGG - tig0038879:4449-4468 Msa1457390:intron 15.0%
!! TATCTAATAAGAATTATTTG+TGG + tig0038879:4933-4952 Msa1457390:intergenic 15.0%
!! TCTTATTAGATATTAAAACA+TGG - tig0038879:4941-4960 Msa1457390:intron 15.0%
!! GATAAAATAAAATAAATGAC+AGG + tig0038879:5108-5127 Msa1457390:intergenic 15.0%
!!! TTATTTTATCATACTTTTGT+TGG - tig0038879:5118-5137 Msa1457390:intron 15.0%
!!! TATTTTATCATACTTTTGTT+GGG - tig0038879:5119-5138 Msa1457390:intron 15.0%
!!! CTAGAATTTTCTTTATTTTT+AGG - tig0038879:5440-5459 Msa1457390:intron 15.0%
!! AATACAAATAAAATAGAGAA+AGG + tig0038879:5601-5620 Msa1457390:intergenic 15.0%
!!! ATCATATTTTTAACATGTAT+GGG + tig0038879:5640-5659 Msa1457390:intergenic 15.0%
!!! ATCACACTTAATTTTTTAAA+TGG + tig0038879:6387-6406 Msa1457390:intergenic 15.0%
!!! ATTTTAAAATATATTCGAGA+GGG + tig0038879:6516-6535 Msa1457390:intergenic 15.0%
!!! TATTTTAAAATATATTCGAG+AGG + tig0038879:6517-6536 Msa1457390:intergenic 15.0%
!!! GTTTGTAATAATTTCAAGTA+TGG - tig0038879:1286-1305 Msa1457390:intron 20.0%
!! AGTGATTGAAAAAAATTTCT+TGG - tig0038879:1397-1416 Msa1457390:intron 20.0%
!!! TCATTTTTTACTTTAAGCTT+AGG - tig0038879:2106-2125 Msa1457390:CDS 20.0%
!! TAAAACCATTCTAAATACAA+GGG - tig0038879:2684-2703 Msa1457390:intron 20.0%
!! CATAATATATAAATCATGCA+TGG + tig0038879:2980-2999 Msa1457390:intergenic 20.0%
!! CATGCATGATTTATATATTA+TGG - tig0038879:2978-2997 Msa1457390:intron 20.0%
!! CACATATGTACAATAATTTA+TGG - tig0038879:3016-3035 Msa1457390:intron 20.0%
!!! TATTCATTTTTTCTTGTCTT+TGG - tig0038879:3087-3106 Msa1457390:intron 20.0%
!! AAAAATCGAATTGTTTACTT+GGG - tig0038879:3180-3199 Msa1457390:intron 20.0%
!!! ACATTTTTTTTTTTATGTCC+TGG - tig0038879:3400-3419 Msa1457390:intron 20.0%
!!! AATGTTTTTTTTTTTTGTGG+TGG + tig0038879:3490-3509 Msa1457390:intergenic 20.0%
!!! AACAATAAACGTTTTTTTAG+TGG - tig0038879:3591-3610 Msa1457390:intron 20.0%
!!! ACATATTTTACTTAAAGAAG+TGG + tig0038879:3690-3709 Msa1457390:intergenic 20.0%
!! TATAATTGTGATATAGACAT+AGG - tig0038879:3935-3954 Msa1457390:intron 20.0%
!! ATAATTGTGATATAGACATA+GGG - tig0038879:3936-3955 Msa1457390:intron 20.0%
!!! ATTTTTGAAAAAAAGTGGAA+GGG + tig0038879:4441-4460 Msa1457390:intergenic 20.0%
!!! AATTTTTGAAAAAAAGTGGA+AGG + tig0038879:4442-4461 Msa1457390:intergenic 20.0%
!! ACAAGATTCTATTAAACAAA+CGG + tig0038879:4990-5009 Msa1457390:intergenic 20.0%
!!! TCTCTATTTTATTTGTATTC+TGG - tig0038879:5602-5621 Msa1457390:intron 20.0%
!!! TCATATTTTTAACATGTATG+GGG + tig0038879:5639-5658 Msa1457390:intergenic 20.0%
!!! CATCATATTTTTAACATGTA+TGG + tig0038879:5641-5660 Msa1457390:intergenic 20.0%
!! ATCTATTGTTAGTGTTTAAA+TGG - tig0038879:5666-5685 Msa1457390:intron 20.0%
!! AAACTGAGTACATTATTAAA+TGG + tig0038879:6006-6025 Msa1457390:intergenic 20.0%
!!! TTTTAAAATATATTCGAGAG+GGG + tig0038879:6515-6534 Msa1457390:intergenic 20.0%
!! AAGAAAAAAACATCTAGTTA+TGG + tig0038879:6932-6951 Msa1457390:intergenic 20.0%
!!! ATAACTAGATGTTTTTTTCT+TGG - tig0038879:6931-6950 Msa1457390:CDS 20.0%
!!! TTTCAAGTATGGTTTTGTAA+CGG - tig0038879:1297-1316 Msa1457390:intron 25.0%
!!! TTTGTTTTGCGAAAGAATAT+TGG - tig0038879:1328-1347 Msa1457390:intron 25.0%
!!! AATTTCTTGGTTTTCTTTCA+TGG - tig0038879:1410-1429 Msa1457390:intron 25.0%
! AATGTCGAAATCAAAAATCA+AGG - tig0038879:1483-1502 Msa1457390:intron 25.0%
!! GAATTTAAAGTTTATGAGTC+AGG + tig0038879:1715-1734 Msa1457390:intergenic 25.0%
!! TACATGAAAAGTGTAAAATC+AGG - tig0038879:1765-1784 Msa1457390:intron 25.0%
! GAATATACTCTAGATATCAT+AGG + tig0038879:1920-1939 Msa1457390:intergenic 25.0%
!!! TTTTAGCTTCTGTTTTTGTT+AGG - tig0038879:2038-2057 Msa1457390:CDS 25.0%
! AGATACCATATTGAAGTTAT+AGG + tig0038879:2381-2400 Msa1457390:intergenic 25.0%
! GTAAAACCATTCTAAATACA+AGG - tig0038879:2683-2702 Msa1457390:intron 25.0%
! TAAGCAAAACTTATAACTCA+AGG + tig0038879:2828-2847 Msa1457390:intergenic 25.0%
!! GAGTTATAAGTTTTGCTTAA+CGG - tig0038879:2829-2848 Msa1457390:intron 25.0%
! AAAACTTTAACTGGTAATAC+TGG - tig0038879:2954-2973 Msa1457390:CDS 25.0%
! TATTGTACATATGTGTTGTA+TGG + tig0038879:3011-3030 Msa1457390:intergenic 25.0%
!!! ATTTTTTCTTGTCTTTGGAT+AGG - tig0038879:3092-3111 Msa1457390:intron 25.0%
!! AAACAATTCGATTTTTGTAC+AGG + tig0038879:3176-3195 Msa1457390:intergenic 25.0%
! CAAAAATCGAATTGTTTACT+TGG - tig0038879:3179-3198 Msa1457390:intron 25.0%
! GAGTTTATGTACAGATAAAT+GGG + tig0038879:3282-3301 Msa1457390:intergenic 25.0%
! AATATGGAAATGTTGTAAGA+AGG - tig0038879:3568-3587 Msa1457390:intron 25.0%
! AGTGTGAATGCATTTATTTA+AGG - tig0038879:3715-3734 Msa1457390:intron 25.0%
!! AAACAGGTCTAACTTTAAAA+AGG + tig0038879:3808-3827 Msa1457390:intergenic 25.0%
! TTCAAAAATTTCTAATGAGG+AGG - tig0038879:4452-4471 Msa1457390:intron 25.0%
! TCAAAAATTTCTAATGAGGA+GGG - tig0038879:4453-4472 Msa1457390:intron 25.0%
!!! TACTATTCTGTATTTTAGCT+CGG - tig0038879:4760-4779 Msa1457390:CDS 25.0%
! TTTAATACAAACTTTCTGCA+GGG + tig0038879:5817-5836 Msa1457390:intergenic 25.0%
! ATTTAATACAAACTTTCTGC+AGG + tig0038879:5818-5837 Msa1457390:intergenic 25.0%
! ATAACTTAGCTATGTAATTC+TGG - tig0038879:5836-5855 Msa1457390:intron 25.0%
!!! CTTATCATTATAGTTGATGA+TGG + tig0038879:5967-5986 Msa1457390:intergenic 25.0%
! ATCAACTATAATGATAAGAC+AGG - tig0038879:5969-5988 Msa1457390:intron 25.0%
!!! CTCAGTTTATTTTATGTCTT+CGG - tig0038879:6018-6037 Msa1457390:intron 25.0%
!!! CTTACATTTTGATATTTCAG+TGG + tig0038879:6292-6311 Msa1457390:intergenic 25.0%
! CACTGAAATATCAAAATGTA+AGG - tig0038879:6290-6309 Msa1457390:intron 25.0%
!! TTTAAAATATATTCGAGAGG+GGG + tig0038879:6514-6533 Msa1457390:intergenic 25.0%
!! ACCAAAAAATTATTTTCCCA+CGG + tig0038879:6607-6626 Msa1457390:intergenic 25.0%
! CCATAGTAATAAGTTAAAGA+TGG + tig0038879:6754-6773 Msa1457390:intergenic 25.0%
!! CCATCTTTAACTTATTACTA+TGG - tig0038879:6751-6770 Msa1457390:intron 25.0%
!! ACACTGTTTGATTTATTTCA+AGG - tig0038879:6786-6805 Msa1457390:intron 25.0%
! ACCAAGCAAACTAAAATATA+TGG - tig0038879:6966-6985 Msa1457390:CDS 25.0%
!!! ACCATATATTTTAGTTTGCT+TGG + tig0038879:6970-6989 Msa1457390:intergenic 25.0%
!! AAAATATATGGTCTTTTTGC+AGG - tig0038879:6978-6997 Msa1457390:CDS 25.0%
!! AAAATGAGAGAGAGTTTTGA+GGG + tig0038879:883-902 None:intergenic 30.0%
! TTTCTGAAAGAGGATTTGAT+GGG + tig0038879:1045-1064 Msa1457390:intergenic 30.0%
! ATTGGTTGATTTACTTGTGT+TGG - tig0038879:1346-1365 Msa1457390:intron 30.0%
TGATTTACTTGTGTTGGATA+AGG - tig0038879:1352-1371 Msa1457390:intron 30.0%
CTAAGAGTTATGAAATGGAT+TGG - tig0038879:1433-1452 Msa1457390:intron 30.0%
!! AAAGCACACTTTTTGTTTGT+TGG - tig0038879:1517-1536 Msa1457390:intron 30.0%
AATGCAAATGCTTAGATTGT+AGG - tig0038879:1575-1594 Msa1457390:intron 30.0%
ATGCAAATGCTTAGATTGTA+GGG - tig0038879:1576-1595 Msa1457390:intron 30.0%
!!! TGTTTTTTGGATCAGAAACA+AGG - tig0038879:1644-1663 Msa1457390:intron 30.0%
! TCTAGAGTATATTCGATTCT+AGG - tig0038879:1926-1945 Msa1457390:intron 30.0%
!!! ATTTTTGCTTCAGTTTTGAG+TGG - tig0038879:2076-2095 Msa1457390:CDS 30.0%
ATAAGCTTAACCATTCCATA+AGG + tig0038879:2141-2160 Msa1457390:intergenic 30.0%
AGTAGTTAAGTCTTGAGTTA+TGG - tig0038879:2175-2194 Msa1457390:intron 30.0%
GTAGTTAAGTCTTGAGTTAT+GGG - tig0038879:2176-2195 Msa1457390:intron 30.0%
TGATGCCTATAACTTCAATA+TGG - tig0038879:2373-2392 Msa1457390:intron 30.0%
CTAGGAAGTTGTACAATTAA+AGG + tig0038879:2588-2607 Msa1457390:intergenic 30.0%
GCTTACTTGCTTATATTAAG+TGG - tig0038879:2797-2816 Msa1457390:intron 30.0%
TTGTTTCATCGTCATATTGA+AGG + tig0038879:3257-3276 Msa1457390:intergenic 30.0%
GGAGTTTATGTACAGATAAA+TGG + tig0038879:3283-3302 Msa1457390:intergenic 30.0%
GAATAATACTTCTCATAGCA+TGG - tig0038879:3374-3393 Msa1457390:intron 30.0%
!!! TTTTTTTTTTTTGTGGTGGC+CGG + tig0038879:3486-3505 Msa1457390:intergenic 30.0%
!!! TAAACGTTTTTTTAGTGGAG+TGG - tig0038879:3596-3615 Msa1457390:intron 30.0%
!!! AAACGTTTTTTTAGTGGAGT+GGG - tig0038879:3597-3616 Msa1457390:intron 30.0%
TTGAACTGTTGTATCTACTT+TGG + tig0038879:3662-3681 Msa1457390:intergenic 30.0%
TAACTTTGATTACACAGCAA+CGG + tig0038879:3771-3790 Msa1457390:intergenic 30.0%
!!! CTTGAATTTTTTTGGACTGA+GGG + tig0038879:3839-3858 Msa1457390:intergenic 30.0%
!!! TCTTGAATTTTTTTGGACTG+AGG + tig0038879:3840-3859 Msa1457390:intergenic 30.0%
AGTCCAAAAAAATTCAAGAG+TGG - tig0038879:3841-3860 Msa1457390:intron 30.0%
! TCTCAATCAAATGAAAGCAT+GGG + tig0038879:4001-4020 Msa1457390:intergenic 30.0%
ATCTCAATCAAATGAAAGCA+TGG + tig0038879:4002-4021 Msa1457390:intergenic 30.0%
TTCTCAAATGACCTCATAAA+AGG - tig0038879:4236-4255 Msa1457390:intron 30.0%
TGCTTCTCAATATACTGTTA+AGG - tig0038879:4370-4389 Msa1457390:intron 30.0%
CAAAAATTTCTAATGAGGAG+GGG - tig0038879:4454-4473 Msa1457390:intron 30.0%
GTTAGAAAAAGAGTTTGAGA+CGG + tig0038879:4498-4517 Msa1457390:intergenic 30.0%
!!! TGATTTTTTGTTTTCGCAAG+AGG + tig0038879:4558-4577 Msa1457390:intergenic 30.0%
TAAACAAACGGATCTATTCA+TGG + tig0038879:4978-4997 Msa1457390:intergenic 30.0%
! AATCTTGTTTCCTTCTTTCA+GGG - tig0038879:5002-5021 Msa1457390:intron 30.0%
TTGCAGTTTATGATTTGATG+AGG - tig0038879:5057-5076 Msa1457390:intron 30.0%
TTAGTGTTTAAATGGACAAC+TGG - tig0038879:5674-5693 Msa1457390:intron 30.0%
AAGATAATATGCCTCTTCTT+TGG + tig0038879:5763-5782 Msa1457390:intergenic 30.0%
AATAGGCTGCAAATTGAAAA+GGG + tig0038879:6073-6092 Msa1457390:intergenic 30.0%
! TAGTGATTTCTTTTCTTGCA+AGG + tig0038879:6128-6147 Msa1457390:intergenic 30.0%
GCTAGATTTACAAATAACAG+TGG + tig0038879:6235-6254 Msa1457390:intergenic 30.0%
TCAAAATGTAAGGTTGTGTT+TGG - tig0038879:6300-6319 Msa1457390:intron 30.0%
!!! TCCGTGGGAAAATAATTTTT+TGG - tig0038879:6603-6622 Msa1457390:intron 30.0%
!! AAGCTTCTTGCTTTGAAATA+TGG - tig0038879:6702-6721 Msa1457390:intron 30.0%
CACTTGGACTAAAATACTTT+GGG + tig0038879:6873-6892 Msa1457390:intergenic 30.0%
TCACTTGGACTAAAATACTT+TGG + tig0038879:6874-6893 Msa1457390:intergenic 30.0%
!!! AGATGTTTTTTTCTTGGAGT+CGG - tig0038879:6937-6956 Msa1457390:CDS 30.0%
!! AGTTGTTTCTGACCTTAAAA+AGG - tig0038879:7035-7054 Msa1457390:CDS 30.0%
! AAATAAGCTGTGCCTTTTTA+AGG + tig0038879:7050-7069 Msa1457390:intergenic 30.0%
! GAAAATGAGAGAGAGTTTTG+AGG + tig0038879:884-903 None:intergenic 35.0%
! CATGGGTTTGTTTGATAAGA+AGG + tig0038879:980-999 Msa1457390:intergenic 35.0%
! GTTTCTGAAAGAGGATTTGA+TGG + tig0038879:1046-1065 Msa1457390:intergenic 35.0%
AGTTCCACTAGTAATTTCTC+TGG - tig0038879:1108-1127 Msa1457390:CDS 35.0%
TAAAAGAGGAGTCGTTACTA+TGG - tig0038879:1185-1204 Msa1457390:intron 35.0%
CATGGCTAAGAGTTATGAAA+TGG - tig0038879:1428-1447 Msa1457390:intron 35.0%
GTCGAAATCAAAAATCAAGG+TGG - tig0038879:1486-1505 Msa1457390:intron 35.0%
!! ACACTTTTTGTTTGTTGGAG+AGG - tig0038879:1522-1541 Msa1457390:intron 35.0%
GAGAGGTTTAGTAGAATTGT+GGG - tig0038879:1539-1558 Msa1457390:intron 35.0%
AGAGGTTTAGTAGAATTGTG+GGG - tig0038879:1540-1559 Msa1457390:intron 35.0%
TGCAAATGCTTAGATTGTAG+GGG - tig0038879:1577-1596 Msa1457390:intron 35.0%
!!! TATGCCAACTTGTTTTGTCT+AGG - tig0038879:1685-1704 Msa1457390:intron 35.0%
TCTACCTAGACAAAACAAGT+TGG + tig0038879:1692-1711 Msa1457390:intergenic 35.0%
GCAAAGAAACCCTAAAAAGT+GGG + tig0038879:1973-1992 Msa1457390:intergenic 35.0%
AGCAAAGAAACCCTAAAAAG+TGG + tig0038879:1974-1993 Msa1457390:intergenic 35.0%
!!! TAGCTTCTGTTTTTGTTAGG+TGG - tig0038879:2041-2060 Msa1457390:CDS 35.0%
!!! TCTGTTTTTGTTAGGTGGTT+AGG - tig0038879:2046-2065 Msa1457390:CDS 35.0%
GAGTTATGGGTTCTACTTAA+TGG - tig0038879:2189-2208 Msa1457390:intron 35.0%
! TCAATATGGTATCTAAAGCG+TGG - tig0038879:2387-2406 Msa1457390:intron 35.0%
TAAACAACGCGTAATCAAGT+AGG + tig0038879:2419-2438 Msa1457390:intergenic 35.0%
TCTTAGCTTCTGCTTTAGTT+AGG - tig0038879:2455-2474 Msa1457390:intron 35.0%
GGAGTAATAACGATCAATCT+AGG + tig0038879:2606-2625 Msa1457390:intergenic 35.0%
TCACACCCTTGTATTTAGAA+TGG + tig0038879:2692-2711 Msa1457390:intergenic 35.0%
!! AGCTTTACGTAGTTTTACAG+TGG - tig0038879:2751-2770 Msa1457390:intron 35.0%
! GAGTAGCGTATATTTTACCT+CGG + tig0038879:3046-3065 Msa1457390:intergenic 35.0%
TAGGTTATTCCTTTCTCAAG+AGG - tig0038879:3111-3130 Msa1457390:intron 35.0%
AGGTTATTCCTTTCTCAAGA+GGG - tig0038879:3112-3131 Msa1457390:intron 35.0%
TATCTGTACATAAACTCCAC+CGG - tig0038879:3285-3304 Msa1457390:intron 35.0%
!! ATCACTAACCTTTGTTGTTC+CGG + tig0038879:3307-3326 Msa1457390:intergenic 35.0%
GACAATGCATAGTATATGCA+AGG - tig0038879:3445-3464 Msa1457390:intron 35.0%
!!! TTTTTTTTTTTGTGGTGGCC+GGG + tig0038879:3485-3504 Msa1457390:intergenic 35.0%
ACATTTCCATATTCTGCATC+AGG + tig0038879:3561-3580 Msa1457390:intergenic 35.0%
!!! AACGTTTTTTTAGTGGAGTG+GGG - tig0038879:3598-3617 Msa1457390:intron 35.0%
!!! GAGCCACTCTTGAATTTTTT+TGG + tig0038879:3847-3866 Msa1457390:intergenic 35.0%
GTGCATAGAAAATGAAACTC+TGG - tig0038879:4025-4044 Msa1457390:intron 35.0%
!! GACTTTTAGTGCTATTGACT+AGG - tig0038879:4211-4230 Msa1457390:intron 35.0%
AACAGTATATTGAGAAGCAG+AGG + tig0038879:4369-4388 Msa1457390:intergenic 35.0%
TTTGAAAAAAAGTGGAAGGG+TGG + tig0038879:4438-4457 Msa1457390:intergenic 35.0%
CAAGAGGATAACAAAGACTA+AGG + tig0038879:4542-4561 Msa1457390:intergenic 35.0%
!!! GTATTTTAGCTCGGATTGTT+AGG - tig0038879:4769-4788 Msa1457390:CDS 35.0%
TATTTGTGGATCTTTCTGCT+TGG + tig0038879:4919-4938 Msa1457390:intergenic 35.0%
! GAATCTTGTTTCCTTCTTTC+AGG - tig0038879:5001-5020 Msa1457390:intron 35.0%
TTGGGTCTTAAACTGTATAC+TGG - tig0038879:5137-5156 Msa1457390:intron 35.0%
! TCTTAAACTGTATACTGGCT+AGG - tig0038879:5142-5161 Msa1457390:intron 35.0%
! CTTAAACTGTATACTGGCTA+GGG - tig0038879:5143-5162 Msa1457390:intron 35.0%
! TTAAACTGTATACTGGCTAG+GGG - tig0038879:5144-5163 Msa1457390:intron 35.0%
GTTAAACTACTTACACTGAC+TGG - tig0038879:5179-5198 Msa1457390:intron 35.0%
! GACAGATCAGCATTTTGTAA+CGG + tig0038879:5490-5509 Msa1457390:intergenic 35.0%
ATAATATGCCTCTTCTTTGG+AGG + tig0038879:5760-5779 Msa1457390:intergenic 35.0%
TAGCTATGTAATTCTGGTAC+AGG - tig0038879:5842-5861 Msa1457390:intron 35.0%
ATAGGCTGCAAATTGAAAAG+GGG + tig0038879:6072-6091 Msa1457390:intergenic 35.0%
CAATAGGCTGCAAATTGAAA+AGG + tig0038879:6074-6093 Msa1457390:intergenic 35.0%
AATGTAAGGTTGTGTTTGGA+TGG - tig0038879:6304-6323 Msa1457390:intron 35.0%
!!! ATCTCGACTTTTGTTGTTGA+AGG + tig0038879:6632-6651 Msa1457390:intergenic 35.0%
AGCAGATTGAAGCTGATATT+CGG - tig0038879:6845-6864 Msa1457390:CDS 35.0%
TGAGTATGGAATCATAGACA+AGG - tig0038879:6900-6919 Msa1457390:CDS 35.0%
ACCTCAACTTCAAGAAAAGA+GGG + tig0038879:7092-7111 Msa1457390:intergenic 35.0%
TACCTCAACTTCAAGAAAAG+AGG + tig0038879:7093-7112 Msa1457390:intergenic 35.0%
AAGTTGAGGTAAAGTACATC+TGG - tig0038879:7102-7121 Msa1457390:five_prime_UTR 35.0%
TGAACAAAACGAACGAACCA+TGG - tig0038879:927-946 Msa1457390:exon 40.0%
! AGGATTTGATGGGTCTGATA+GGG + tig0038879:1035-1054 Msa1457390:intergenic 40.0%
! GGAAATGGAGTTTCTGAAAG+AGG + tig0038879:1055-1074 Msa1457390:intergenic 40.0%
GTGACCAGAGAAATTACTAG+TGG + tig0038879:1115-1134 Msa1457390:intergenic 40.0%
GGAGAGGTTTAGTAGAATTG+TGG - tig0038879:1538-1557 Msa1457390:intron 40.0%
TGGATCAGAAACAAGGTTGT+TGG - tig0038879:1651-1670 Msa1457390:intron 40.0%
TTTGACAACCTTGTTCGTGT+TGG - tig0038879:1812-1831 Msa1457390:intron 40.0%
!! ATATTCGATTCTAGGACCTG+TGG - tig0038879:1934-1953 Msa1457390:intron 40.0%
!! TATTCGATTCTAGGACCTGT+GGG - tig0038879:1935-1954 Msa1457390:intron 40.0%
CTTAGGTAGCTTCTACCTTA+TGG - tig0038879:2123-2142 Msa1457390:CDS 40.0%
GTAGCTTCTACCTTATGGAA+TGG - tig0038879:2128-2147 Msa1457390:intron 40.0%
TTGTTTAGTCTCACTTGGCT+TGG - tig0038879:2432-2451 Msa1457390:intron 40.0%
TAGCTTCTGCTTTAGTTAGG+TGG - tig0038879:2458-2477 Msa1457390:intron 40.0%
AGCTACCAAAGCTTGATCAT+CGG + tig0038879:2539-2558 Msa1457390:intergenic 40.0%
CCTAGGAAGTTGTATACTCT+TGG + tig0038879:2627-2646 Msa1457390:intergenic 40.0%
! CCAAGAGTATACAACTTCCT+AGG - tig0038879:2624-2643 Msa1457390:intron 40.0%
! TATTTAGTGAGCACTAGCCT+AGG + tig0038879:2644-2663 Msa1457390:intergenic 40.0%
ACAGTGGCTTCTGACTTATA+TGG - tig0038879:2767-2786 Msa1457390:intron 40.0%
CAATAATTTATGGCACACCG+AGG - tig0038879:3026-3045 Msa1457390:intron 40.0%
TACAGGTAAGAAGCTAAGTC+TGG + tig0038879:3159-3178 Msa1457390:intergenic 40.0%
TCCATCTGTTACAGAGTTGA+TGG - tig0038879:3215-3234 Msa1457390:intron 40.0%
ACCATCAACTCTGTAACAGA+TGG + tig0038879:3219-3238 Msa1457390:intergenic 40.0%
TGCATAGTATATGCAAGGTC+TGG - tig0038879:3450-3469 Msa1457390:intron 40.0%
GCATAGTATATGCAAGGTCT+GGG - tig0038879:3451-3470 Msa1457390:intron 40.0%
CATAGTATATGCAAGGTCTG+GGG - tig0038879:3452-3471 Msa1457390:intron 40.0%
!!! TTTTTTTTTTGTGGTGGCCG+GGG + tig0038879:3484-3503 Msa1457390:intergenic 40.0%
!!! AATTTTTTTGGACTGAGGGC+AGG + tig0038879:3835-3854 Msa1457390:intergenic 40.0%
AGCTAAGTCAATCTATCCTG+AGG - tig0038879:4048-4067 Msa1457390:intron 40.0%
!!! TATGGGCTCGTGATTTTTTG+AGG - tig0038879:4148-4167 Msa1457390:intron 40.0%
GGAAGGGTGGATAACAAATT+GGG + tig0038879:4425-4444 Msa1457390:intergenic 40.0%
TGGAAGGGTGGATAACAAAT+TGG + tig0038879:4426-4445 Msa1457390:intergenic 40.0%
TTTCTAATGAGGAGGGGATT+AGG - tig0038879:4460-4479 Msa1457390:intron 40.0%
! GAAAAAGAGTTTGAGACGGT+GGG + tig0038879:4494-4513 Msa1457390:intergenic 40.0%
! AGAAAAAGAGTTTGAGACGG+TGG + tig0038879:4495-4514 Msa1457390:intergenic 40.0%
GTAACTCGAGGAATGAAACA+CGG + tig0038879:4804-4823 Msa1457390:intergenic 40.0%
GATGAATAGATCGTAACTCG+AGG + tig0038879:4816-4835 Msa1457390:intergenic 40.0%
AGTTTCTACTTAGGACCATC+AGG + tig0038879:4842-4861 Msa1457390:intergenic 40.0%
ATTAACATGCAAGTACCCAG+AGG + tig0038879:4878-4897 Msa1457390:intergenic 40.0%
CTTTCTGCTTGGCAAAGAAA+TGG + tig0038879:4908-4927 Msa1457390:intergenic 40.0%
ACGCAGAGAGTAAAAATAGG+AGG + tig0038879:5877-5896 Msa1457390:intergenic 40.0%
CCAACGCAGAGAGTAAAAAT+AGG + tig0038879:5880-5899 Msa1457390:intergenic 40.0%
!!! CCTATTTTTACTCTCTGCGT+TGG - tig0038879:5877-5896 Msa1457390:intron 40.0%
!! TTGATGATGGCAAAGCAGAA+CGG + tig0038879:5954-5973 Msa1457390:intergenic 40.0%
ATTGAAAAGGGGAACATGGT+TGG + tig0038879:6061-6080 Msa1457390:intergenic 40.0%
GCAAATTGAAAAGGGGAACA+TGG + tig0038879:6065-6084 Msa1457390:intergenic 40.0%
CACTAGAGTGAAGACAGAAT+TGG - tig0038879:6143-6162 Msa1457390:intron 40.0%
TAAGGTTGTGTTTGGATGGA+GGG - tig0038879:6308-6327 Msa1457390:intron 40.0%
! TATATTCGAGAGGGGGTTTT+TGG + tig0038879:6507-6526 Msa1457390:intergenic 40.0%
ACCCAAAGTTTATAGATCCG+TGG - tig0038879:6587-6606 Msa1457390:intron 40.0%
CCCACGGATCTATAAACTTT+GGG + tig0038879:6591-6610 Msa1457390:intergenic 40.0%
CCCAAAGTTTATAGATCCGT+GGG - tig0038879:6588-6607 Msa1457390:intron 40.0%
TCCCACGGATCTATAAACTT+TGG + tig0038879:6592-6611 Msa1457390:intergenic 40.0%
ATATCAGCTTCAATCTGCTC+AGG + tig0038879:6844-6863 Msa1457390:intergenic 40.0%
TAAGGTCAGAAACAACTCCA+TGG + tig0038879:7032-7051 Msa1457390:intergenic 40.0%
! TCCCTCTTTTCTTGAAGTTG+AGG - tig0038879:7088-7107 Msa1457390:five_prime_UTR 40.0%
ACAAAACGAACGAACCATGG+AGG - tig0038879:930-949 Msa1457390:exon 45.0%
GAAGGTGAAAGATGCGTTTG+CGG + tig0038879:962-981 Msa1457390:intergenic 45.0%
GAAGAGGGTGAAATGAGCAT+GGG + tig0038879:997-1016 Msa1457390:intergenic 45.0%
TGAAGAGGGTGAAATGAGCA+TGG + tig0038879:998-1017 Msa1457390:intergenic 45.0%
GTTAGGGTTCGTGATGAAGA+GGG + tig0038879:1012-1031 Msa1457390:intergenic 45.0%
! GGATTTGATGGGTCTGATAG+GGG + tig0038879:1034-1053 Msa1457390:intergenic 45.0%
! GAGGATTTGATGGGTCTGAT+AGG + tig0038879:1036-1055 Msa1457390:intergenic 45.0%
CACATTGACCAACACGAACA+AGG + tig0038879:1823-1842 Msa1457390:intergenic 45.0%
! CTTGTTCGTGTTGGTCAATG+TGG - tig0038879:1821-1840 Msa1457390:intron 45.0%
TTGTTCAGCGTCACTTGACT+TGG - tig0038879:2015-2034 Msa1457390:intron 45.0%
ACGCGTTGTTTAGTCTCACT+TGG - tig0038879:2427-2446 Msa1457390:intron 45.0%
TTCTCCCGATGATCAAGCTT+TGG - tig0038879:2531-2550 Msa1457390:intron 45.0%
GCTACCAAAGCTTGATCATC+GGG + tig0038879:2538-2557 Msa1457390:intergenic 45.0%
GTGGCTTCTGACTTATATGG+TGG - tig0038879:2770-2789 Msa1457390:intron 45.0%
TTTCTCAAGAGGGACTGCAT+GGG - tig0038879:3122-3141 Msa1457390:intron 45.0%
TAAGAAGCTAAGTCTGGTGG+AGG + tig0038879:3153-3172 Msa1457390:intergenic 45.0%
AGGTAAGAAGCTAAGTCTGG+TGG + tig0038879:3156-3175 Msa1457390:intergenic 45.0%
AAACTCCACCGGAACAACAA+AGG - tig0038879:3296-3315 Msa1457390:intron 45.0%
!! ACTAACCTTTGTTGTTCCGG+TGG + tig0038879:3304-3323 Msa1457390:intergenic 45.0%
! TGAGCTTAGCTCAGTTGGTA+TGG - tig0038879:3423-3442 Msa1457390:intron 45.0%
GAACTGCCTGATGCAGAATA+TGG - tig0038879:3552-3571 Msa1457390:intron 45.0%
!! TTTTTAGTGGAGTGGGGCAT+AGG - tig0038879:3604-3623 Msa1457390:intron 45.0%
ACTGAGGGCAGGATATAAAC+AGG + tig0038879:3824-3843 Msa1457390:intergenic 45.0%
CCAATGATGTCTTCCTCATG+CGG - tig0038879:4080-4099 Msa1457390:intron 45.0%
! GATGACATCGGCCTTTTATG+AGG + tig0038879:4250-4269 Msa1457390:intergenic 45.0%
GATAACAAATTGGGCCTGCT+TGG + tig0038879:4416-4435 Msa1457390:intergenic 45.0%
GATCTATTCATCCCTCCTGA+TGG - tig0038879:4824-4843 Msa1457390:CDS 45.0%
TCTACTTAGGACCATCAGGA+GGG + tig0038879:4838-4857 Msa1457390:intergenic 45.0%
TTCTACTTAGGACCATCAGG+AGG + tig0038879:4839-4858 Msa1457390:intergenic 45.0%
CTTGTTTCCTTCTTTCAGGG+AGG - tig0038879:5005-5024 Msa1457390:intron 45.0%
TTTCAGGGAGGTGAGAAGTT+GGG - tig0038879:5017-5036 Msa1457390:intron 45.0%
TCCACCAAGTAACATGTCTG+CGG + tig0038879:5553-5572 Msa1457390:intergenic 45.0%
! TATGCCTCTTCTTTGGAGGT+GGG + tig0038879:5756-5775 Msa1457390:intergenic 45.0%
! ATATGCCTCTTCTTTGGAGG+TGG + tig0038879:5757-5776 Msa1457390:intergenic 45.0%
TCAATTTGCAGCCTATTGCG+CGG - tig0038879:6076-6095 Msa1457390:intron 45.0%
GTAAGGTTGTGTTTGGATGG+AGG - tig0038879:6307-6326 Msa1457390:intron 45.0%
TGTGTTTGGATGGAGGGTTT+AGG - tig0038879:6314-6333 Msa1457390:intron 45.0%
TTTGGATGGAGGGTTTAGGA+GGG - tig0038879:6318-6337 Msa1457390:intron 45.0%
AACTTTGGGTCTGTTCGAGA+GGG + tig0038879:6577-6596 Msa1457390:intergenic 45.0%
AAACTTTGGGTCTGTTCGAG+AGG + tig0038879:6578-6597 Msa1457390:intergenic 45.0%
CCATACTCAACAGCTTCACT+TGG + tig0038879:6889-6908 Msa1457390:intergenic 45.0%
CCAAGTGAAGCTGTTGAGTA+TGG - tig0038879:6886-6905 Msa1457390:CDS 45.0%
! TGCAGGTGTTGTACAATGAG+AGG - tig0038879:6995-7014 Msa1457390:CDS 45.0%
! GCAGGTGTTGTACAATGAGA+GGG - tig0038879:6996-7015 Msa1457390:CDS 45.0%
! CAGGTGTTGTACAATGAGAG+GGG - tig0038879:6997-7016 Msa1457390:CDS 45.0%
! AGAGGGATTTAACTTCCCAG+CGG + tig0038879:7075-7094 Msa1457390:intergenic 45.0%
!!! AAAAAAAAACATTTTTTTTA+TGG - tig0038879:3497-3516 Msa1457390:intron 5.0%
GGTTAGGGTTCGTGATGAAG+AGG + tig0038879:1013-1032 Msa1457390:intergenic 50.0%
GATGGGTCTGATAGGGGTTA+GGG + tig0038879:1028-1047 Msa1457390:intergenic 50.0%
! TGATGGGTCTGATAGGGGTT+AGG + tig0038879:1029-1048 Msa1457390:intergenic 50.0%
AGCGACGAAATCGGTGGAAA+TGG + tig0038879:1070-1089 Msa1457390:intergenic 50.0%
! GAACTACTGATTGCCGTGGA+AGG + tig0038879:1093-1112 Msa1457390:intergenic 50.0%
! AGTGGAACTACTGATTGCCG+TGG + tig0038879:1097-1116 Msa1457390:intergenic 50.0%
! TTTGAAACGTCGCGGGATTG+AGG + tig0038879:1155-1174 Msa1457390:intergenic 50.0%
! AACGACTCCTCTTTTACCGC+CGG + tig0038879:1181-1200 Msa1457390:intergenic 50.0%
!! ATTCTAGGACCTGTGGGTTG+TGG - tig0038879:1941-1960 Msa1457390:intron 50.0%
!! TTCTAGGACCTGTGGGTTGT+GGG - tig0038879:1942-1961 Msa1457390:intron 50.0%
GACGCTGAACAACGCAAAGT+CGG + tig0038879:2007-2026 Msa1457390:intergenic 50.0%
CATGCAGTCCCTCTTGAGAA+AGG + tig0038879:3123-3142 Msa1457390:intergenic 50.0%
CTTTCTCAAGAGGGACTGCA+TGG - tig0038879:3121-3140 Msa1457390:intron 50.0%
!! TCATTGGCTCGTAGTACCTC+AGG + tig0038879:4067-4086 Msa1457390:intergenic 50.0%
CCGCATGAGGAAGACATCAT+TGG + tig0038879:4083-4102 Msa1457390:intergenic 50.0%
TAAGATTGTGCGTCCGCATG+AGG + tig0038879:4096-4115 Msa1457390:intergenic 50.0%
CATGCGGACGCACAATCTTA+CGG - tig0038879:4096-4115 Msa1457390:intron 50.0%
TATGCAGCGCAGCACAATGT+GGG + tig0038879:4130-4149 Msa1457390:intergenic 50.0%
ATATGCAGCGCAGCACAATG+TGG + tig0038879:4131-4150 Msa1457390:intergenic 50.0%
ACATTGTGCTGCGCTGCATA+TGG - tig0038879:4130-4149 Msa1457390:intron 50.0%
CATTGTGCTGCGCTGCATAT+GGG - tig0038879:4131-4150 Msa1457390:intron 50.0%
AAACGACGACGCATCACAGT+AGG + tig0038879:4287-4306 Msa1457390:intergenic 50.0%
AAATGTCCACACGCCACTGT+CGG + tig0038879:4341-4360 Msa1457390:intergenic 50.0%
CTGCTTGGTTCAGTTGGAAG+GGG + tig0038879:4401-4420 Msa1457390:intergenic 50.0%
CCTGCTTGGTTCAGTTGGAA+GGG + tig0038879:4402-4421 Msa1457390:intergenic 50.0%
! GTTTGAGACGGTGGGTCAAA+AGG + tig0038879:4486-4505 Msa1457390:intergenic 50.0%
CTTCTCACCTCCCTGAAAGA+AGG + tig0038879:5015-5034 Msa1457390:intergenic 50.0%
CTTTCAGGGAGGTGAGAAGT+TGG - tig0038879:5016-5035 Msa1457390:intron 50.0%
TGTGCCGCAGACATGTTACT+TGG - tig0038879:5546-5565 Msa1457390:intron 50.0%
! ATGCCTCTTCTTTGGAGGTG+GGG + tig0038879:5755-5774 Msa1457390:intergenic 50.0%
! TCTCTGCGTTGGCAATGCTT+GGG - tig0038879:5888-5907 Msa1457390:intron 50.0%
TGCACCAGCAGCCAAAAGTA+AGG + tig0038879:5923-5942 Msa1457390:intergenic 50.0%
!! ACTTTTGGCTGCTGGTGCAA+AGG - tig0038879:5924-5943 Msa1457390:intron 50.0%
!! CTTTTGGCTGCTGGTGCAAA+GGG - tig0038879:5925-5944 Msa1457390:intron 50.0%
! AGGGGAACATGGTTGGTGTT+TGG + tig0038879:6054-6073 Msa1457390:intergenic 50.0%
TGACCTTGAAACCGCGCAAT+AGG + tig0038879:6090-6109 Msa1457390:intergenic 50.0%
GTTTGGATGGAGGGTTTAGG+AGG - tig0038879:6317-6336 Msa1457390:intron 50.0%
! TTGGAGGGTAGGGTTTTGCA+GGG + tig0038879:6488-6507 Msa1457390:intergenic 50.0%
! TTTGGAGGGTAGGGTTTTGC+AGG + tig0038879:6489-6508 Msa1457390:intergenic 50.0%
!! TTCGAGAGGGGGTTTTTGGA+GGG + tig0038879:6503-6522 Msa1457390:intergenic 50.0%
!! ATTCGAGAGGGGGTTTTTGG+AGG + tig0038879:6504-6523 Msa1457390:intergenic 50.0%
! TTCGAGAGGGAGTTTCTGGA+GGG + tig0038879:6564-6583 Msa1457390:intergenic 50.0%
TCTGTTCGAGAGGGAGTTTC+TGG + tig0038879:6568-6587 Msa1457390:intergenic 50.0%
GTACAATGAGAGGGGCTCTA+AGG - tig0038879:7005-7024 Msa1457390:CDS 50.0%
GCACAGCTTATTTGACCGCT+GGG - tig0038879:7057-7076 Msa1457390:exon 50.0%
GTTTGCGGTTGCAACCTCCA+TGG + tig0038879:947-966 Msa1457390:intergenic 55.0%
CGTGGAAGGAGCGACGAAAT+CGG + tig0038879:1079-1098 Msa1457390:intergenic 55.0%
CGATTTCGTCGCTCCTTCCA+CGG - tig0038879:1077-1096 Msa1457390:intron 55.0%
CAAAGCTCCGGCGGTAAAAG+AGG - tig0038879:1171-1190 Msa1457390:CDS 55.0%
! TCTAGGACCTGTGGGTTGTG+GGG - tig0038879:1943-1962 Msa1457390:intron 55.0%
!!! TGGGGACGGCCCACTTTTTA+GGG - tig0038879:1961-1980 Msa1457390:intron 55.0%
CCAACTGAGCTAAGCTCACC+AGG + tig0038879:3421-3440 Msa1457390:intergenic 55.0%
CCTGGTGAGCTTAGCTCAGT+TGG - tig0038879:3418-3437 Msa1457390:intron 55.0%
! AAGGTCTGGGGTTCAAACCC+CGG - tig0038879:3464-3483 Msa1457390:intron 55.0%
CGCAGCACAATGTGGGATCA+TGG + tig0038879:4123-4142 Msa1457390:intergenic 55.0%
GCGCAAGGAGGAGATGACAT+CGG + tig0038879:4262-4281 Msa1457390:intergenic 55.0%
TCTCTCTGTGCATCCGACAG+TGG - tig0038879:4325-4344 Msa1457390:intron 55.0%
CCCTTCCAACTGAACCAAGC+AGG - tig0038879:4399-4418 Msa1457390:intron 55.0%
GCCTGCTTGGTTCAGTTGGA+AGG + tig0038879:4403-4422 Msa1457390:intergenic 55.0%
TTGGGCCTGCTTGGTTCAGT+TGG + tig0038879:4407-4426 Msa1457390:intergenic 55.0%
TAACATGTCTGCGGCACAGC+AGG + tig0038879:5544-5563 Msa1457390:intergenic 55.0%
! GCCGCAGACATGTTACTTGG+TGG - tig0038879:5549-5568 Msa1457390:intron 55.0%
AGGTGGGGTTGTGCAGTGAT+GGG + tig0038879:5740-5759 Msa1457390:intergenic 55.0%
CAACCCCACCTCCAAAGAAG+AGG - tig0038879:5749-5768 Msa1457390:intron 55.0%
TGCAGGGACTTCTGCACGTT+GGG + tig0038879:5801-5820 Msa1457390:intergenic 55.0%
! CTCTCTGCGTTGGCAATGCT+TGG - tig0038879:5887-5906 Msa1457390:intron 55.0%
! CTCTGCGTTGGCAATGCTTG+GGG - tig0038879:5889-5908 Msa1457390:intron 55.0%
! GGGAGAGGCAGCCTTACTTT+TGG - tig0038879:5909-5928 Msa1457390:intron 55.0%
!! GCAGCCTTACTTTTGGCTGC+TGG - tig0038879:5916-5935 Msa1457390:intron 55.0%
CAGCCTATTGCGCGGTTTCA+AGG - tig0038879:6084-6103 Msa1457390:intron 55.0%
ATGGAGGGTTTAGGAGGGCA+GGG - tig0038879:6323-6342 Msa1457390:intron 55.0%
!! GAGGGGGTTTTTGGAGGGTA+GGG + tig0038879:6498-6517 Msa1457390:intergenic 55.0%
!! AGAGGGGGTTTTTGGAGGGT+AGG + tig0038879:6499-6518 Msa1457390:intergenic 55.0%
! TCGAGAGGGAGTTTCTGGAG+GGG + tig0038879:6563-6582 Msa1457390:intergenic 55.0%
! GTTCGAGAGGGAGTTTCTGG+AGG + tig0038879:6565-6584 Msa1457390:intergenic 55.0%
GGCACAGCTTATTTGACCGC+TGG - tig0038879:7056-7075 Msa1457390:exon 55.0%
GGAAGGAGCGACGAAATCGG+TGG + tig0038879:1076-1095 Msa1457390:intergenic 60.0%
AACGTCGCGGGATTGAGGCA+CGG + tig0038879:1150-1169 Msa1457390:intergenic 60.0%
!! CCGGAGCTTTGAAACGTCGC+GGG + tig0038879:1162-1181 Msa1457390:intergenic 60.0%
CCCGCGACGTTTCAAAGCTC+CGG - tig0038879:1159-1178 Msa1457390:CDS 60.0%
!! GCCGGAGCTTTGAAACGTCG+CGG + tig0038879:1163-1182 Msa1457390:intergenic 60.0%
GCGACGTTTCAAAGCTCCGG+CGG - tig0038879:1162-1181 Msa1457390:CDS 60.0%
!!! GTGGGGACGGCCCACTTTTT+AGG - tig0038879:1960-1979 Msa1457390:intron 60.0%
! TCACAGTAGGAGGCGCAAGG+AGG + tig0038879:4274-4293 Msa1457390:intergenic 60.0%
! GCATCACAGTAGGAGGCGCA+AGG + tig0038879:4277-4296 Msa1457390:intergenic 60.0%
CGACGACGCATCACAGTAGG+AGG + tig0038879:4284-4303 Msa1457390:intergenic 60.0%
GAGGTGGGGTTGTGCAGTGA+TGG + tig0038879:5741-5760 Msa1457390:intergenic 60.0%
CTGCAGGGACTTCTGCACGT+TGG + tig0038879:5802-5821 Msa1457390:intergenic 60.0%
CGTTGGCAATGCTTGGGGAG+AGG - tig0038879:5894-5913 Msa1457390:intron 60.0%
GATGGAGGGTTTAGGAGGGC+AGG - tig0038879:6322-6341 Msa1457390:intron 60.0%
! GGGTAGGGTTTTGCAGGGCT+AGG + tig0038879:6483-6502 Msa1457390:intergenic 60.0%
CTGGAGGGGAGGGTTTCGAA+GGG + tig0038879:6549-6568 Msa1457390:intergenic 60.0%
TCTGGAGGGGAGGGTTTCGA+AGG + tig0038879:6550-6569 Msa1457390:intergenic 60.0%
! GAGGGAGTTTCTGGAGGGGA+GGG + tig0038879:6559-6578 Msa1457390:intergenic 60.0%
! AGAGGGAGTTTCTGGAGGGG+AGG + tig0038879:6560-6579 Msa1457390:intergenic 60.0%
!! GAGAGGGGCTCTAAGGACCA+TGG - tig0038879:7012-7031 Msa1457390:CDS 60.0%
CGGGATTGAGGCACGGAGGA+CGG + tig0038879:1143-1162 Msa1457390:intergenic 65.0%
! GGACCTGTGGGTTGTGGGGA+CGG - tig0038879:1947-1966 Msa1457390:intron 65.0%
CGATCGCGCATGCGCGAAGA+AGG - tig0038879:4181-4200 Msa1457390:intron 65.0%
GTGCATCCGACAGTGGCGTG+TGG - tig0038879:4332-4351 Msa1457390:intron 65.0%
CGGCACAGCAGGACTGTGAC+AGG + tig0038879:5533-5552 Msa1457390:intergenic 65.0%
GTCGCGGGATTGAGGCACGG+AGG + tig0038879:1147-1166 Msa1457390:intergenic 70.0%
GGGCCGTCCCCACAACCCAC+AGG + tig0038879:1953-1972 Msa1457390:intergenic 75.0%
Chromosome Type Strat End Strand Name
tig0038879 gene 862 7144 862 ID=Msa1457390;Name=Msa1457390
tig0038879 mRNA 862 7144 862 ID=Msa1457390-mRNA-1;Parent=Msa1457390;Name=Msa1457390-mRNA-1;_AED=0.12;_eAED=0.12;_QI=84|1|1|1|1|1|7|73|303
tig0038879 exon 862 1006 862 ID=Msa1457390-mRNA-1:exon:21117;Parent=Msa1457390-mRNA-1
tig0038879 exon 1085 1198 1085 ID=Msa1457390-mRNA-1:exon:21116;Parent=Msa1457390-mRNA-1
tig0038879 exon 1842 1919 1842 ID=Msa1457390-mRNA-1:exon:21115;Parent=Msa1457390-mRNA-1
tig0038879 exon 2016 2142 2016 ID=Msa1457390-mRNA-1:exon:21114;Parent=Msa1457390-mRNA-1
tig0038879 exon 2928 2983 2928 ID=Msa1457390-mRNA-1:exon:21113;Parent=Msa1457390-mRNA-1
tig0038879 exon 4689 4892 4689 ID=Msa1457390-mRNA-1:exon:21112;Parent=Msa1457390-mRNA-1
tig0038879 exon 6800 7144 6800 ID=Msa1457390-mRNA-1:exon:21111;Parent=Msa1457390-mRNA-1
tig0038879 five_prime_UTR 7061 7144 7061 ID=Msa1457390-mRNA-1:five_prime_utr;Parent=Msa1457390-mRNA-1
tig0038879 CDS 6800 7060 6800 ID=Msa1457390-mRNA-1:cds;Parent=Msa1457390-mRNA-1
tig0038879 CDS 4689 4892 4689 ID=Msa1457390-mRNA-1:cds;Parent=Msa1457390-mRNA-1
tig0038879 CDS 2928 2983 2928 ID=Msa1457390-mRNA-1:cds;Parent=Msa1457390-mRNA-1
tig0038879 CDS 2016 2142 2016 ID=Msa1457390-mRNA-1:cds;Parent=Msa1457390-mRNA-1
tig0038879 CDS 1842 1919 1842 ID=Msa1457390-mRNA-1:cds;Parent=Msa1457390-mRNA-1
tig0038879 CDS 1085 1198 1085 ID=Msa1457390-mRNA-1:cds;Parent=Msa1457390-mRNA-1
tig0038879 CDS 935 1006 935 ID=Msa1457390-mRNA-1:cds;Parent=Msa1457390-mRNA-1
tig0038879 three_prime_UTR 862 934 862 ID=Msa1457390-mRNA-1:three_prime_utr;Parent=Msa1457390-mRNA-1
Gene Sequence

>Msa1457390

ATGGAGGTTGCAACCGCAAACGCATCTTTCACCTTCTTATCAAACAAACCCATGCTCATTTCACCCTCTTCATCACGAACCCTAACCCCTATCAGACCCATCAAATCCTCTTTCAGAAACTCCATTTCCACCGATTTCGTCGCTCCTTCCACGGCAATCAGTAGTTCCACTAGTAATTTCTCTGGTCACAAGCTCCGTCCTCCGTGCCTCAATCCCGCGACGTTTCAAAGCTCCGGCGGTAAAAGAGGAGTCGTTACTATGGTTATTCCTTTCTCAAGAGGGACTGCATGGGAGCAACCTCCACCAGACTTAGCTTCTTACCTGTACAAAAATCGAATTGTTTACTTGGGCATGTCTCTCGTTCCATCTGTTACAGAGTTGATGGTTGCTGAATTTCTTTACCTTCAATATGACGATGAAACAAAACCCATTTATCTGTACATAAACTCCACCGGAACAACAAAGGGAGGTGAGAAGTTGGGTTATGAGACTGAAGCACTTGCAGTTTATGATTTGATGAGGTACATCAAGCCTCCTATTTTTACTCTCTGCGTTGGCAATGCTTGGGGAGAGGCAGCCTTACTTTTGGCTGCTGGTGCAAAGGGTAACCGTTCTGCTTTGCCATCATCAACTATAATGATAAGACAGCCTATTGCGCGGTTTCAAGGTCAAGCAACAGACGTCAACCTTGCAAGAAAAGAAATCACTAGAGTGAAGACAGAATTGGTTAATTTGTTAGCAAAGCACACTGAAAAAACACCTGAGCAGATTGAAGCTGATATTCGGCGCCCAAAGTATTTTAGTCCAAGTGAAGCTGTTGAGTATGGAATCATAGACAAGGTGTTGTACAATGAGAGGGGCTCTAAGGACCATGGAGTTGTTTCTGACCTTAAAAAGGCACAGCTTATTTGA

Protein sequence

>Msa1457390

MEVATANASFTFLSNKPMLISPSSSRTLTPIRPIKSSFRNSISTDFVAPSTAISSSTSNFSGHKLRPPCLNPATFQSSGGKRGVVTMVIPFSRGTAWEQPPPDLASYLYKNRIVYLGMSLVPSVTELMVAEFLYLQYDDETKPIYLYINSTGTTKGGEKLGYETEALAVYDLMRYIKPPIFTLCVGNAWGEAALLLAAGAKGNRSALPSSTIMIRQPIARFQGQATDVNLARKEITRVKTELVNLLAKHTEKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYNERGSKDHGVVSDLKKAQLI*