AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1420590

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1420590 MtrunA17_Chr4g0006181 99.308 289 2 0 1 289 59 347 0.0 590
Msa1420590 MtrunA17_Chr3g0113311 70.566 265 74 1 12 272 11 275 6.70e-134 380
Msa1420590 MtrunA17_Chr6g0462031 40.000 230 90 5 57 282 49 234 1.80e-44 151
Msa1420590 MtrunA17_Chr2g0301081 34.615 260 92 7 53 288 61 266 1.12e-38 137
Msa1420590 MtrunA17_Chr8g0345631 33.205 259 95 5 53 287 62 266 7.23e-35 127
Msa1420590 MtrunA17_Chr3g0133901 30.795 302 131 5 13 289 17 265 9.39e-35 126
Msa1420590 MtrunA17_Chr6g0476641 33.452 281 116 10 35 289 47 282 1.42e-34 126
Msa1420590 MtrunA17_Chr3g0092091 30.671 313 132 8 1 289 1 252 2.10e-31 117
Msa1420590 MtrunA17_Chr6g0453181 33.446 296 136 10 3 281 2 253 5.51e-31 116
Msa1420590 MtrunA17_Chr4g0051941 34.228 298 132 11 3 281 2 254 1.90e-30 115
Msa1420590 MtrunA17_Chr6g0453141 33.670 297 134 11 3 281 2 253 1.02e-29 113
Msa1420590 MtrunA17_Chr6g0453151 33.670 297 134 11 3 281 69 320 2.23e-29 114
Msa1420590 MtrunA17_Chr6g0453161 32.770 296 138 10 3 281 269 520 2.71e-29 116
Msa1420590 MtrunA17_Chr6g0453161 43.293 164 78 7 132 281 93 255 3.78e-27 110
Msa1420590 MtrunA17_Chr2g0318521 35.622 233 92 7 61 278 60 249 3.25e-29 112
Msa1420590 MtrunA17_Chr1g0157481 31.111 315 139 12 5 288 62 329 9.31e-29 112
Msa1420590 MtrunA17_Chr2g0279001 31.818 308 115 9 4 268 2 257 9.52e-29 110
Msa1420590 MtrunA17_Chr5g0447531 32.836 268 109 11 35 278 30 250 1.56e-26 104
Msa1420590 MtrunA17_Chr5g0448421 29.710 276 122 7 39 286 43 274 1.46e-25 102
Msa1420590 MtrunA17_Chr5g0448411 30.000 280 121 7 35 286 40 272 2.08e-25 102
Msa1420590 MtrunA17_Chr6g0464511 46.018 113 54 4 175 281 89 200 5.19e-20 86.3
Msa1420590 MtrunA17_Chr6g0453171 56.716 67 28 1 215 281 21 86 1.64e-18 79.0
Msa1420590 MtrunA17_Chr2g0296081 50.000 72 31 2 216 287 36 102 4.59e-13 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1420590 AT3G08940.2 87.004 277 33 2 14 289 13 287 2.49e-178 493
Msa1420590 AT5G01530.1 87.726 277 33 1 14 289 14 290 3.49e-174 483
Msa1420590 AT2G40100.1 70.189 265 74 2 12 272 10 273 1.30e-132 377
Msa1420590 AT3G08940.1 77.326 172 36 2 15 185 14 183 4.75e-90 267
Msa1420590 AT2G40100.2 64.024 164 55 1 12 171 10 173 3.32e-71 218
Msa1420590 AT3G54890.1 41.453 234 87 6 57 285 48 236 5.05e-47 158
Msa1420590 AT1G19150.1 33.846 260 94 6 53 288 64 269 5.50e-35 127
Msa1420590 AT4G10340.1 35.573 253 102 8 53 289 66 273 9.23e-35 127
Msa1420590 AT3G61470.1 33.977 259 93 6 53 287 51 255 1.32e-34 126
Msa1420590 AT1G45474.2 32.830 265 99 5 51 289 43 254 2.13e-34 125
Msa1420590 AT1G45474.1 32.830 265 99 5 51 289 43 254 2.13e-34 125
Msa1420590 AT2G34420.1 34.333 300 128 11 3 281 2 253 8.75e-33 121
Msa1420590 AT1G29930.1 35.099 302 125 13 3 281 2 255 1.78e-32 120
Msa1420590 AT1G29920.1 35.099 302 125 13 3 281 2 255 3.71e-32 120
Msa1420590 AT1G29910.1 35.099 302 125 13 3 281 2 255 3.71e-32 120
Msa1420590 AT1G76570.1 34.304 309 126 12 5 283 61 322 4.21e-32 121
Msa1420590 AT3G47470.1 30.645 310 129 8 4 287 2 251 7.65e-32 119
Msa1420590 AT3G54890.4 37.629 194 72 5 57 246 48 196 1.53e-30 114
Msa1420590 AT5G54270.1 33.696 276 108 8 35 278 18 250 1.99e-30 115
Msa1420590 AT2G34430.1 44.785 163 74 6 134 281 93 254 6.18e-30 114
Msa1420590 AT1G15820.1 33.704 270 75 9 40 268 48 254 4.47e-29 111
Msa1420590 AT1G61520.3 30.435 276 119 7 39 286 40 270 6.34e-28 108
Msa1420590 AT1G61520.1 30.435 276 119 7 39 286 40 270 6.34e-28 108
Msa1420590 AT2G05070.1 33.108 296 125 13 7 278 4 250 2.38e-27 107
Msa1420590 AT2G05100.1 34.363 259 96 11 47 278 39 250 1.84e-26 105
Msa1420590 AT3G27690.2 33.110 299 130 13 3 278 32 283 3.14e-26 105
Msa1420590 AT3G27690.1 33.220 295 127 13 7 278 4 251 7.83e-26 103
Msa1420590 AT1G61520.2 29.388 245 102 6 70 286 14 215 2.01e-20 87.8
Msa1420590 AT2G05100.2 32.927 246 91 11 47 265 39 237 2.41e-19 86.7
Msa1420590 AT5G28450.1 45.783 83 44 1 206 287 89 171 6.29e-14 68.9

Find 178 sgRNAs with CRISPR-Local

Find 221 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACACTTCGACCTAATGTTTA+AGG 0.157400 tig0024833:+8999 None:intergenic
CTTGATCTTGATGGTTTCTT+TGG 0.159376 tig0024833:+11251 None:intergenic
GAGTTTCTCGCGCGTCTTAT+TGG 0.196650 tig0024833:-9248 Msa1420590:three_prime_UTR
GTTGGAAGGTATGTTCATTT+TGG 0.214618 tig0024833:-8652 Msa1420590:three_prime_UTR
CTTACTGTTGAATGGCTTAC+TGG 0.215175 tig0024833:-10631 Msa1420590:CDS
CAGCCTTACAGTGAAGTATT+TGG 0.222406 tig0024833:-10721 Msa1420590:CDS
AACTTGTTACCCAAACAAAA+TGG 0.225218 tig0024833:-9023 Msa1420590:three_prime_UTR
TATTTGGACTTCAGAGGTTT+AGG 0.232272 tig0024833:-10705 Msa1420590:CDS
CGACTCGCTTGATCAGAATT+TGG 0.240362 tig0024833:-10812 Msa1420590:CDS
AGTTTCTCGCGCGTCTTATT+GGG 0.265119 tig0024833:-9247 Msa1420590:three_prime_UTR
GAATAACTTGTTAGAGGATT+TGG 0.276097 tig0024833:-8763 Msa1420590:three_prime_UTR
TGGTGATGAATTGGTGATTA+TGG 0.278938 tig0024833:+11498 None:intergenic
GGAAGTTTGGTCGGAGATTA+CGG 0.284629 tig0024833:-10886 Msa1420590:CDS
GGCTGCAGCGGTGGCGGTTG+CGG 0.291908 tig0024833:+11367 None:intergenic
CTATATATATAAATGCTATT+TGG 0.296999 tig0024833:-9447 Msa1420590:three_prime_UTR
TGGATCGAAGTTCTAGTAAT+TGG 0.298063 tig0024833:-9774 Msa1420590:CDS
GGATTTGATCCATTTGGTTT+GGG 0.302182 tig0024833:-10865 Msa1420590:CDS
CAAAACAAGTTAGAACATTT+CGG 0.309667 tig0024833:+9214 None:intergenic
TCTCTATCACAACACTTATC+TGG 0.311866 tig0024833:-9794 Msa1420590:CDS
AGCGACGGTGGCGGAGGTTT+GGG 0.324777 tig0024833:-8859 Msa1420590:three_prime_UTR
CGGATTTGATCCATTTGGTT+TGG 0.331501 tig0024833:-10866 Msa1420590:CDS
TGGCGGTTGCGGCGGCCATT+TGG 0.332788 tig0024833:+11378 None:intergenic
AAGCGACGGTGGCGGAGGTT+TGG 0.333824 tig0024833:-8860 Msa1420590:three_prime_UTR
GTGAAATTCCTAATGTGAAT+TGG 0.346762 tig0024833:-9384 Msa1420590:three_prime_UTR
TGGTGATTATGGATAATCTT+TGG 0.353186 tig0024833:+11509 None:intergenic
ACTTCACTGTAAGGCTGAAA+TGG 0.355377 tig0024833:+10727 None:intergenic
CTTGCTATGGTTGCTTTCCT+TGG 0.358398 tig0024833:-9609 Msa1420590:CDS
TTTATTGAATAACTTGTTAG+AGG 0.360410 tig0024833:-8769 Msa1420590:three_prime_UTR
ATTTGGACTTCAGAGGTTTA+GGG 0.363642 tig0024833:-10704 Msa1420590:CDS
GTAAAGGACCACTTAACAAT+TGG 0.364076 tig0024833:-9560 Msa1420590:CDS
CACTCCGGTGACTTTGCTCC+GGG 0.367189 tig0024833:+10916 None:intergenic
TCTTCTTTCCAAAGCCGAAT+CGG 0.368119 tig0024833:+11282 None:intergenic
GGCTTGGATCCTACCCGAAT+TGG 0.370873 tig0024833:+11304 None:intergenic
AAACATTAGGTCGAAGTGTT+GGG 0.371629 tig0024833:-8995 Msa1420590:three_prime_UTR
TTTCAGGTTGAGCTAGTAGA+AGG 0.373969 tig0024833:-9846 Msa1420590:intron
CAAAATGGGCCTTAAACATT+AGG 0.374408 tig0024833:-9008 Msa1420590:three_prime_UTR
TTCCAAAGCCGAATCGGGCT+TGG 0.378185 tig0024833:+11288 None:intergenic
ATCCAAGCCCGATTCGGCTT+TGG 0.380468 tig0024833:-11290 Msa1420590:CDS
TTTGCTCCGGGGTACCATAA+TGG 0.383572 tig0024833:+10928 None:intergenic
TAACTGCTCCAATTCACATT+AGG 0.383713 tig0024833:+9376 None:intergenic
GTTCTTGATTAACTCATGTA+TGG 0.384423 tig0024833:-9478 Msa1420590:three_prime_UTR
TGAGGGCAATGAGGAACATT+AGG 0.388001 tig0024833:-9292 Msa1420590:three_prime_UTR
CTTCTTTCCAAAGCCGAATC+GGG 0.391044 tig0024833:+11283 None:intergenic
GTGAGTTGATTCATGGTAGA+TGG 0.391291 tig0024833:-10678 Msa1420590:CDS
GATTACGGATTTGATCCATT+TGG 0.397788 tig0024833:-10871 Msa1420590:CDS
AGGGAATGTGAGTTGATTCA+TGG 0.400554 tig0024833:-10685 Msa1420590:CDS
TTGATGTGGTGGTGATGAAT+TGG 0.401399 tig0024833:+11489 None:intergenic
ATGAGGAGGATGAGTGGCTT+TGG 0.404388 tig0024833:-8722 Msa1420590:three_prime_UTR
GTGGCGGAGGTTTGGGTGAA+TGG 0.404667 tig0024833:-8852 Msa1420590:three_prime_UTR
AAAGAAAGCAACACTTCAAT+TGG 0.404848 tig0024833:-9652 Msa1420590:CDS
CCGCGAAGTTCAATCCAATT+CGG 0.405011 tig0024833:-11318 Msa1420590:CDS
CGCGAAGTTCAATCCAATTC+GGG 0.412313 tig0024833:-11317 Msa1420590:CDS
AAGACGCGCGAGAAACTCAT+AGG 0.413072 tig0024833:+9253 None:intergenic
GTTTGGGTGAATGGCGAGAT+GGG 0.414370 tig0024833:-8843 Msa1420590:three_prime_UTR
TTGGTGCTCTTACTGTTGAA+TGG 0.414634 tig0024833:-10639 Msa1420590:CDS
CATCAAGCTCAGCATTTCTC+TGG 0.414677 tig0024833:+9739 None:intergenic
GTACTGGGACTTGATCTTGA+TGG 0.416331 tig0024833:+11242 None:intergenic
ATTATGGATAATCTTTGGTT+TGG 0.423165 tig0024833:+11514 None:intergenic
GCTGTTCAAGCTGCTGCTAC+TGG 0.427306 tig0024833:-9582 Msa1420590:CDS
AGGATTTGGAGGGTCATGTT+GGG 0.427442 tig0024833:-8749 Msa1420590:three_prime_UTR
GTAGAAGGATCAACATATCT+TGG 0.431470 tig0024833:-9831 Msa1420590:CDS
CCACTCCGGTGACTTTGCTC+CGG 0.432695 tig0024833:+10915 None:intergenic
TGGGCTATGCTTGCTACTCT+TGG 0.438475 tig0024833:-10658 Msa1420590:CDS
GATTCACCCTCGTGGGAATC+CGG 0.439616 tig0024833:+8529 None:intergenic
CTTTGGAAGTTAGAAGAGGA+TGG 0.439791 tig0024833:-8705 Msa1420590:three_prime_UTR
TAAATCTATGCATACTAAGT+TGG 0.441664 tig0024833:-8670 Msa1420590:three_prime_UTR
CCGGAGATGTGATCGGAACT+AGG 0.444206 tig0024833:-10777 Msa1420590:CDS
GGAGTGGCTAGACGGAAGTT+TGG 0.446982 tig0024833:-10899 Msa1420590:CDS
CAAGCTGCTGCTACTGGTAA+AGG 0.448841 tig0024833:-9576 Msa1420590:CDS
GGTAGGATCCAAGCCCGATT+CGG 0.454874 tig0024833:-11296 Msa1420590:CDS
GGAAAATTCTTTGACCCACT+TGG 0.458494 tig0024833:-9693 Msa1420590:CDS
CGATAACGCCACTGCCTTCG+AGG 0.458569 tig0024833:+8569 None:intergenic
GGGTGAATGGCGAGATGGGA+AGG 0.460424 tig0024833:-8839 Msa1420590:three_prime_UTR
AGGGCGCGCAAGAAATCAAT+AGG 0.461474 tig0024833:-9139 Msa1420590:three_prime_UTR
AATTTGGCGAAGAATCTTGC+CGG 0.462568 tig0024833:-10796 Msa1420590:CDS
TTGACTAAGCATGAAATTTG+AGG 0.467015 tig0024833:-9310 Msa1420590:three_prime_UTR
AATGTGAATTGGAGCAGTTA+AGG 0.470078 tig0024833:-9373 Msa1420590:three_prime_UTR
CAGGTACTGATCGTCCATTA+TGG 0.471652 tig0024833:-10942 Msa1420590:CDS
ATATAAATGCTATTTGGCAT+TGG 0.474581 tig0024833:-9441 Msa1420590:three_prime_UTR
TTATATAATCTGAACTACAT+AGG 0.475676 tig0024833:-9159 Msa1420590:three_prime_UTR
TGGATTGAACTTCGCGGAGG+CGG 0.476462 tig0024833:+11324 None:intergenic
ACTTGTTACCCAAACAAAAT+GGG 0.477726 tig0024833:-9022 Msa1420590:three_prime_UTR
ATAAGTGTTGTGATAGAGAA+TGG 0.479242 tig0024833:+9798 None:intergenic
GAGGATTTGGAGGGTCATGT+TGG 0.481391 tig0024833:-8750 Msa1420590:three_prime_UTR
TGGTTTATGCTAATGTGAGC+AGG 0.482884 tig0024833:+11398 None:intergenic
GGAAGAAAAGGTATCAATGA+TGG 0.486648 tig0024833:+9506 None:intergenic
TGCAGCGGTGGCGGTTGCGG+CGG 0.492945 tig0024833:+11370 None:intergenic
TAAACATTAGGTCGAAGTGT+TGG 0.493781 tig0024833:-8996 Msa1420590:three_prime_UTR
ATCAATAGGATGAGAAAAGG+AGG 0.493891 tig0024833:-9125 Msa1420590:three_prime_UTR
TGACTAAGCATGAAATTTGA+GGG 0.498032 tig0024833:-9309 Msa1420590:three_prime_UTR
ATGGCGAGATGGGAAGGGAG+TGG 0.499769 tig0024833:-8833 Msa1420590:three_prime_UTR
CAAGAACTAAGAGGAAGAAA+AGG 0.500205 tig0024833:+9494 None:intergenic
GAAATCAATAGGATGAGAAA+AGG 0.501625 tig0024833:-9128 Msa1420590:three_prime_UTR
TAGACAAGTGTGGAAGAGTC+CGG 0.503085 tig0024833:-8595 Msa1420590:three_prime_UTR
GTTACATAATAATGTTAAGA+TGG 0.504422 tig0024833:+9043 None:intergenic
GCTGGTTTCCCCAAACCAAA+TGG 0.504445 tig0024833:+10856 None:intergenic
GGATTGAACTTCGCGGAGGC+GGG 0.511648 tig0024833:+11325 None:intergenic
TAGTGTTGTATTTGATGTGG+TGG 0.521205 tig0024833:+11478 None:intergenic
AAAAGAAGCGACGGTGGCGG+AGG 0.523348 tig0024833:-8865 Msa1420590:three_prime_UTR
CCTAGTTCCGATCACATCTC+CGG 0.525368 tig0024833:+10777 None:intergenic
TAAAGGACCACTTAACAATT+GGG 0.525889 tig0024833:-9559 Msa1420590:CDS
GGTGTTACATGGCAAGATGC+TGG 0.526008 tig0024833:-10610 Msa1420590:CDS
GGAAGTTAGAAGAGGATGGG+AGG 0.526262 tig0024833:-8701 Msa1420590:three_prime_UTR
TAACTTGTTAGAGGATTTGG+AGG 0.528716 tig0024833:-8760 Msa1420590:three_prime_UTR
TTTGGATAACAAGTGGGGTA+CGG 0.530717 tig0024833:-8634 Msa1420590:three_prime_UTR
AGTCCAAATACTTCACTGTA+AGG 0.530759 tig0024833:+10718 None:intergenic
TGAAGTGGCTGCAGCGGTGG+CGG 0.531682 tig0024833:+11361 None:intergenic
TATATAATCTGAACTACATA+GGG 0.533030 tig0024833:-9158 Msa1420590:three_prime_UTR
TTTGGAAGTTAGAAGAGGAT+GGG 0.534072 tig0024833:-8704 Msa1420590:three_prime_UTR
TGAGTAGCCCAATTGTTAAG+TGG 0.534802 tig0024833:+9552 None:intergenic
GCCACTGCCTTCGAGGGTGC+CGG 0.535719 tig0024833:+8576 None:intergenic
TCACATTAGCATAAACCAAA+TGG 0.537826 tig0024833:-11393 Msa1420590:exon
TGAGTTAATCAAGAACTAAG+AGG 0.538848 tig0024833:+9485 None:intergenic
GGTTTGGGTGAATGGCGAGA+TGG 0.539811 tig0024833:-8844 Msa1420590:three_prime_UTR
TCCGGCACCCTCGAAGGCAG+TGG 0.540281 tig0024833:-8577 Msa1420590:three_prime_UTR
AATGGCTTACTGGTGTTACA+TGG 0.542824 tig0024833:-10621 Msa1420590:CDS
GGTGAATGGCGAGATGGGAA+GGG 0.543748 tig0024833:-8838 Msa1420590:three_prime_UTR
CAAACATGCTCGTCTTGCTA+TGG 0.544135 tig0024833:-9622 Msa1420590:CDS
GAAGGGAGTGGAGGTTTATG+TGG 0.545521 tig0024833:-8821 Msa1420590:three_prime_UTR
GGGTCATGTTGGGTCTCATG+AGG 0.550259 tig0024833:-8739 Msa1420590:three_prime_UTR
CCGAATTGGATTGAACTTCG+CGG 0.551574 tig0024833:+11318 None:intergenic
TCAAATTGCAAATACTCCGC+TGG 0.554662 tig0024833:+10838 None:intergenic
GAAGAGTCCGGCACCCTCGA+AGG 0.556658 tig0024833:-8583 Msa1420590:three_prime_UTR
AACATTAGGTCGAAGTGTTG+GGG 0.556714 tig0024833:-8994 Msa1420590:three_prime_UTR
TGGCTAGACGGAAGTTTGGT+CGG 0.562317 tig0024833:-10895 Msa1420590:CDS
AGATGTGATCGGAACTAGGA+CGG 0.563578 tig0024833:-10773 Msa1420590:CDS
GATTTGATCCATTTGGTTTG+GGG 0.565681 tig0024833:-10864 Msa1420590:CDS
GTGAAGTATTTGGACTTCAG+AGG 0.565781 tig0024833:-10711 Msa1420590:CDS
GTGGCTTTGGAAGTTAGAAG+AGG 0.565781 tig0024833:-8709 Msa1420590:three_prime_UTR
TGATAGTGTTGTATTTGATG+TGG 0.569485 tig0024833:+11475 None:intergenic
CGAAGGCAGTGGCGTTATCG+TGG 0.572000 tig0024833:-8566 Msa1420590:three_prime_UTR
GCGAGATGGGAAGGGAGTGG+AGG 0.579451 tig0024833:-8830 Msa1420590:three_prime_UTR
TGATGAAGTGGCTGCAGCGG+TGG 0.581298 tig0024833:+11358 None:intergenic
GGTCTCATGAGGAGGATGAG+TGG 0.584966 tig0024833:-8728 Msa1420590:three_prime_UTR
GATAACGCCACTGCCTTCGA+GGG 0.585897 tig0024833:+8570 None:intergenic
AATCTTGCCGGAGATGTGAT+CGG 0.588189 tig0024833:-10784 Msa1420590:CDS
AGGATGAGAAAAGGAGGAGT+CGG 0.592384 tig0024833:-9119 Msa1420590:three_prime_UTR
CACCTTAAAAGAAGCGACGG+TGG 0.597352 tig0024833:-8871 Msa1420590:three_prime_UTR
CTTAAAAGAAGCGACGGTGG+CGG 0.597860 tig0024833:-8868 Msa1420590:three_prime_UTR
TGAGTTGATTCATGGTAGAT+GGG 0.603160 tig0024833:-10677 Msa1420590:CDS
ATTTGGTTTGGGGAAACCAG+CGG 0.603481 tig0024833:-10854 Msa1420590:CDS
TCTATGCATACTAAGTTGGA+AGG 0.603716 tig0024833:-8666 Msa1420590:three_prime_UTR
TACATGGCAAGATGCTGGAA+AGG 0.603751 tig0024833:-10605 Msa1420590:intron
CATGAAATTTGAGGGCAATG+AGG 0.607187 tig0024833:-9301 Msa1420590:three_prime_UTR
AGTGGAGGTTTATGTGGCGG+CGG 0.609678 tig0024833:-8815 Msa1420590:three_prime_UTR
AAGTCACCGGAGTGGCTAGA+CGG 0.609847 tig0024833:-10907 Msa1420590:CDS
CGCGCGAGAAACTCATAGGG+TGG 0.610162 tig0024833:+9257 None:intergenic
GGTTTATGCTAATGTGAGCA+GGG 0.610931 tig0024833:+11399 None:intergenic
GCAGCCACTTCATCATTCAT+CGG 0.611200 tig0024833:-11350 Msa1420590:CDS
GTTGTGATAGAGAATGGAAG+TGG 0.611749 tig0024833:+9804 None:intergenic
AAACTTCCGTCTAGCCACTC+CGG 0.616068 tig0024833:+10901 None:intergenic
GTACCCCGGAGCAAAGTCAC+CGG 0.620014 tig0024833:-10920 Msa1420590:CDS
TCTTGATGGTTTCTTTGGTG+CGG 0.621232 tig0024833:+11256 None:intergenic
GGGAGTGGAGGTTTATGTGG+CGG 0.622216 tig0024833:-8818 Msa1420590:three_prime_UTR
GTGGGGTACGGAGGAGAAAG+CGG 0.624525 tig0024833:-8622 Msa1420590:three_prime_UTR
TCATGTTGGGTCTCATGAGG+AGG 0.628294 tig0024833:-8736 Msa1420590:three_prime_UTR
TCAATGATGGTAGTGTGAAG+AGG 0.631393 tig0024833:+9519 None:intergenic
GGTCAGATGCTAAGCCAAGT+GGG 0.631916 tig0024833:+9679 None:intergenic
GCATTGGTTTGTAAACATTG+TGG 0.633055 tig0024833:-9425 Msa1420590:three_prime_UTR
GGGTCAGATGCTAAGCCAAG+TGG 0.635931 tig0024833:+9678 None:intergenic
CAGCTTGAACAGCAAAACCA+AGG 0.638361 tig0024833:+9592 None:intergenic
GGATAACAAGTGGGGTACGG+AGG 0.640840 tig0024833:-8631 Msa1420590:three_prime_UTR
AGACGCGCGAGAAACTCATA+GGG 0.640977 tig0024833:+9254 None:intergenic
TACTTGACCGGATTCCCACG+AGG 0.641748 tig0024833:-8536 None:intergenic
ACTTGACCGGATTCCCACGA+GGG 0.643385 tig0024833:-8535 None:intergenic
AAACACCTTAAAAGAAGCGA+CGG 0.648870 tig0024833:-8874 Msa1420590:three_prime_UTR
GAATGATGAAGTGGCTGCAG+CGG 0.651301 tig0024833:+11355 None:intergenic
AAGTTCAATCCAATTCGGGT+AGG 0.656773 tig0024833:-11313 Msa1420590:CDS
GGTGCCGATGAATGATGAAG+TGG 0.658626 tig0024833:+11346 None:intergenic
AAGCGGTGTTTAGACAAGTG+TGG 0.666298 tig0024833:-8605 Msa1420590:three_prime_UTR
GATCGTCCATTATGGTACCC+CGG 0.673771 tig0024833:-10934 Msa1420590:CDS
CCGGAGCAAAGTCACCGGAG+TGG 0.687601 tig0024833:-10915 Msa1420590:CDS
AACTTGTTAGAGGATTTGGA+GGG 0.691679 tig0024833:-8759 Msa1420590:three_prime_UTR
ACTCCGGTGACTTTGCTCCG+GGG 0.699763 tig0024833:+10917 None:intergenic
AATTGGATTGAACTTCGCGG+AGG 0.719272 tig0024833:+11321 None:intergenic
GAAAAGAGACTATACCCAGG+TGG 0.723166 tig0024833:-9714 Msa1420590:CDS
GCAGAAAAGAGACTATACCC+AGG 0.746677 tig0024833:-9717 Msa1420590:CDS
TTATGCTAATGTGAGCAGGG+TGG 0.828916 tig0024833:+11402 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTATTTTTTTTATTTTT+AGG - tig0024833:9661-9680 Msa1420590:CDS 0.0%
!!! TTTTATTTTTTTTATTTTTA+GGG - tig0024833:9662-9681 Msa1420590:CDS 0.0%
!!! TTTTTCTTTTTACATTATAT+TGG - tig0024833:9999-10018 Msa1420590:intron 10.0%
!! AAAGAAGATTAAAAAATTAT+TGG - tig0024833:10033-10052 Msa1420590:intron 10.0%
!! TATTAGTTATAATTAGTTGA+TGG - tig0024833:8905-8924 Msa1420590:three_prime_UTR 15.0%
!! AATCTTTAATTATATCTAAC+AGG - tig0024833:9097-9116 Msa1420590:three_prime_UTR 15.0%
!!! CATGTTTTATGTTTTTTTTA+TGG - tig0024833:9713-9732 Msa1420590:CDS 15.0%
!!! AAATCTTACTAAACTATTTT+AGG + tig0024833:9859-9878 None:intergenic 15.0%
!! TTTCATTATCATATAATATG+AGG - tig0024833:10115-10134 Msa1420590:intron 15.0%
!!! TTCACTAAATTATGAAATTT+TGG - tig0024833:10182-10201 Msa1420590:intron 15.0%
!!! AAATTTTGGTATAATTTTTC+AGG - tig0024833:10196-10215 Msa1420590:intron 15.0%
!! CTATATATATAAATGCTATT+TGG - tig0024833:10611-10630 Msa1420590:CDS 15.0%
!! TTAATTATATCTAACGTACT+GGG + tig0024833:8834-8853 None:intergenic 20.0%
!! TTTAATTATATCTAACGTAC+TGG + tig0024833:8835-8854 None:intergenic 20.0%
!! AAAAAAGAATATCATACTAG+TGG - tig0024833:8997-9016 Msa1420590:three_prime_UTR 20.0%
!!! TTTATGTTTGTTTTGTATAG+AGG - tig0024833:9781-9800 Msa1420590:CDS 20.0%
!! ATTACAAACATTATATCACA+TGG - tig0024833:9907-9926 Msa1420590:intron 20.0%
!!! AAGTAAGAAAATAGGTTTTA+TGG - tig0024833:9932-9951 Msa1420590:intron 20.0%
!!! TTAATATTTTTTCTGCTAGA+TGG - tig0024833:10708-10727 Msa1420590:CDS 20.0%
!!! TAATATTTTTTCTGCTAGAT+GGG - tig0024833:10709-10728 Msa1420590:CDS 20.0%
!! TTATATAATCTGAACTACAT+AGG - tig0024833:10899-10918 Msa1420590:CDS 20.0%
!! TATATAATCTGAACTACATA+GGG - tig0024833:10900-10919 Msa1420590:CDS 20.0%
!! GTTACATAATAATGTTAAGA+TGG + tig0024833:11018-11037 None:intergenic 20.0%
!!! TTTATTGAATAACTTGTTAG+AGG - tig0024833:11289-11308 Msa1420590:CDS 20.0%
! ATTATGGATAATCTTTGGTT+TGG + tig0024833:8547-8566 None:intergenic 25.0%
!! GTTTGTGAGTTTTTGAATTT+GGG + tig0024833:8614-8633 None:intergenic 25.0%
!! TGTTTGTGAGTTTTTGAATT+TGG + tig0024833:8615-8634 None:intergenic 25.0%
!! AGTAACTAACTTGTGTAAAA+AGG - tig0024833:9021-9040 Msa1420590:three_prime_UTR 25.0%
! AATCAAAATGCTTCAAGATA+TGG + tig0024833:9972-9991 None:intergenic 25.0%
!! ATTTCTAAGAGTTTATAGCA+AGG + tig0024833:10142-10161 None:intergenic 25.0%
!! ATATAAATGCTATTTGGCAT+TGG - tig0024833:10617-10636 Msa1420590:CDS 25.0%
! CAAAACAAGTTAGAACATTT+CGG + tig0024833:10847-10866 None:intergenic 25.0%
!!! AATGTTCTAACTTGTTTTGA+AGG - tig0024833:10848-10867 Msa1420590:CDS 25.0%
!!! CTTGTTTTGAAGGTTTTTAT+TGG - tig0024833:10858-10877 Msa1420590:CDS 25.0%
! TAAATCTATGCATACTAAGT+TGG - tig0024833:11388-11407 Msa1420590:exon 25.0%
TGGTGATTATGGATAATCTT+TGG + tig0024833:8552-8571 None:intergenic 30.0%
! TGATAGTGTTGTATTTGATG+TGG + tig0024833:8586-8605 None:intergenic 30.0%
TCACATTAGCATAAACCAAA+TGG - tig0024833:8665-8684 Msa1420590:three_prime_UTR 30.0%
GTCTTTAATTCAAGTGTGTT+TGG - tig0024833:9579-9598 Msa1420590:CDS 30.0%
GTATAGAGGATAAAAGATAG+TGG - tig0024833:9795-9814 Msa1420590:CDS 30.0%
ACATGGTCAAGTAAGAAAAT+AGG - tig0024833:9924-9943 Msa1420590:intron 30.0%
! ATAAGTGTTGTGATAGAGAA+TGG + tig0024833:10263-10282 None:intergenic 30.0%
AAAGAAAGCAACACTTCAAT+TGG - tig0024833:10406-10425 Msa1420590:intron 30.0%
TAAAGGACCACTTAACAATT+GGG - tig0024833:10499-10518 Msa1420590:intron 30.0%
TGAGTTAATCAAGAACTAAG+AGG + tig0024833:10576-10595 None:intergenic 30.0%
GTTCTTGATTAACTCATGTA+TGG - tig0024833:10580-10599 Msa1420590:intron 30.0%
GTGAAATTCCTAATGTGAAT+TGG - tig0024833:10674-10693 Msa1420590:CDS 30.0%
TTGACTAAGCATGAAATTTG+AGG - tig0024833:10748-10767 Msa1420590:CDS 30.0%
TGACTAAGCATGAAATTTGA+GGG - tig0024833:10749-10768 Msa1420590:CDS 30.0%
GAAATCAATAGGATGAGAAA+AGG - tig0024833:10930-10949 Msa1420590:CDS 30.0%
!! AACTTGTTACCCAAACAAAA+TGG - tig0024833:11035-11054 Msa1420590:intron 30.0%
! ACTTGTTACCCAAACAAAAT+GGG - tig0024833:11036-11055 Msa1420590:intron 30.0%
!! GAATAACTTGTTAGAGGATT+TGG - tig0024833:11295-11314 Msa1420590:CDS 30.0%
! TGTTCATTTTGGATAACAAG+TGG - tig0024833:11417-11436 Msa1420590:five_prime_UTR 30.0%
! GTTCATTTTGGATAACAAGT+GGG - tig0024833:11418-11437 Msa1420590:five_prime_UTR 30.0%
! TTCATTTTGGATAACAAGTG+GGG - tig0024833:11419-11438 Msa1420590:five_prime_UTR 30.0%
! TGGTGATGAATTGGTGATTA+TGG + tig0024833:8563-8582 None:intergenic 35.0%
TAGTGTTGTATTTGATGTGG+TGG + tig0024833:8583-8602 None:intergenic 35.0%
! CTTGATCTTGATGGTTTCTT+TGG + tig0024833:8810-8829 None:intergenic 35.0%
GATTACGGATTTGATCCATT+TGG - tig0024833:9187-9206 Msa1420590:three_prime_UTR 35.0%
! GGATTTGATCCATTTGGTTT+GGG - tig0024833:9193-9212 Msa1420590:three_prime_UTR 35.0%
!! GATTTGATCCATTTGGTTTG+GGG - tig0024833:9194-9213 Msa1420590:three_prime_UTR 35.0%
AGTCCAAATACTTCACTGTA+AGG + tig0024833:9343-9362 None:intergenic 35.0%
TATTTGGACTTCAGAGGTTT+AGG - tig0024833:9353-9372 Msa1420590:three_prime_UTR 35.0%
ATTTGGACTTCAGAGGTTTA+GGG - tig0024833:9354-9373 Msa1420590:three_prime_UTR 35.0%
!! TGAGTTGATTCATGGTAGAT+GGG - tig0024833:9381-9400 Msa1420590:three_prime_UTR 35.0%
TAATTCAAGTGTGTTTGGCT+CGG - tig0024833:9584-9603 Msa1420590:CDS 35.0%
GTAGAAGGATCAACATATCT+TGG - tig0024833:10227-10246 Msa1420590:intron 35.0%
TCTCTATCACAACACTTATC+TGG - tig0024833:10264-10283 Msa1420590:intron 35.0%
! TGGATCGAAGTTCTAGTAAT+TGG - tig0024833:10284-10303 Msa1420590:intron 35.0%
!!! GAAGTGTTGCTTTCTTTTCT+GGG + tig0024833:10403-10422 None:intergenic 35.0%
!!! TGAAGTGTTGCTTTCTTTTC+TGG + tig0024833:10404-10423 None:intergenic 35.0%
GTAAAGGACCACTTAACAAT+TGG - tig0024833:10498-10517 Msa1420590:intron 35.0%
!! GGAAGAAAAGGTATCAATGA+TGG + tig0024833:10555-10574 None:intergenic 35.0%
CAAGAACTAAGAGGAAGAAA+AGG + tig0024833:10567-10586 None:intergenic 35.0%
!! GCATTGGTTTGTAAACATTG+TGG - tig0024833:10633-10652 Msa1420590:CDS 35.0%
TAACTGCTCCAATTCACATT+AGG + tig0024833:10685-10704 None:intergenic 35.0%
AATGTGAATTGGAGCAGTTA+AGG - tig0024833:10685-10704 Msa1420590:CDS 35.0%
TCATAGGGTGGAAAAAGTAA+TGG + tig0024833:10792-10811 None:intergenic 35.0%
ATCAATAGGATGAGAAAAGG+AGG - tig0024833:10933-10952 Msa1420590:CDS 35.0%
!! GTTTAAGGCCCATTTTGTTT+GGG + tig0024833:11047-11066 None:intergenic 35.0%
!! TGTTTAAGGCCCATTTTGTT+TGG + tig0024833:11048-11067 None:intergenic 35.0%
CAAAATGGGCCTTAAACATT+AGG - tig0024833:11050-11069 Msa1420590:intron 35.0%
ACACTTCGACCTAATGTTTA+AGG + tig0024833:11062-11081 None:intergenic 35.0%
TAAACATTAGGTCGAAGTGT+TGG - tig0024833:11062-11081 Msa1420590:intron 35.0%
! AAACATTAGGTCGAAGTGTT+GGG - tig0024833:11063-11082 Msa1420590:intron 35.0%
AAACACCTTAAAAGAAGCGA+CGG - tig0024833:11184-11203 Msa1420590:intron 35.0%
!!! GAATTTTTTCGTTTGGGAAG+AGG - tig0024833:11265-11284 Msa1420590:CDS 35.0%
!! TAACTTGTTAGAGGATTTGG+AGG - tig0024833:11298-11317 Msa1420590:CDS 35.0%
!! AACTTGTTAGAGGATTTGGA+GGG - tig0024833:11299-11318 Msa1420590:CDS 35.0%
TTTGGAAGTTAGAAGAGGAT+GGG - tig0024833:11354-11373 Msa1420590:CDS 35.0%
! TCTATGCATACTAAGTTGGA+AGG - tig0024833:11392-11411 Msa1420590:exon 35.0%
!! GTTGGAAGGTATGTTCATTT+TGG - tig0024833:11406-11425 Msa1420590:five_prime_UTR 35.0%
! TTGATGTGGTGGTGATGAAT+TGG + tig0024833:8572-8591 None:intergenic 40.0%
GGTTTATGCTAATGTGAGCA+GGG + tig0024833:8662-8681 None:intergenic 40.0%
TGGTTTATGCTAATGTGAGC+AGG + tig0024833:8663-8682 None:intergenic 40.0%
AAGTTCAATCCAATTCGGGT+AGG - tig0024833:8745-8764 Msa1420590:three_prime_UTR 40.0%
TCTTCTTTCCAAAGCCGAAT+CGG + tig0024833:8779-8798 None:intergenic 40.0%
! TCTTGATGGTTTCTTTGGTG+CGG + tig0024833:8805-8824 None:intergenic 40.0%
CGGATTTGATCCATTTGGTT+TGG - tig0024833:9192-9211 Msa1420590:three_prime_UTR 40.0%
TCAAATTGCAAATACTCCGC+TGG + tig0024833:9223-9242 None:intergenic 40.0%
AATTTGGCGAAGAATCTTGC+CGG - tig0024833:9262-9281 Msa1420590:three_prime_UTR 40.0%
ACTTCACTGTAAGGCTGAAA+TGG + tig0024833:9334-9353 None:intergenic 40.0%
! CAGCCTTACAGTGAAGTATT+TGG - tig0024833:9337-9356 Msa1420590:three_prime_UTR 40.0%
! GTGAAGTATTTGGACTTCAG+AGG - tig0024833:9347-9366 Msa1420590:three_prime_UTR 40.0%
!! AGGGAATGTGAGTTGATTCA+TGG - tig0024833:9373-9392 Msa1420590:three_prime_UTR 40.0%
!! GTGAGTTGATTCATGGTAGA+TGG - tig0024833:9380-9399 Msa1420590:three_prime_UTR 40.0%
! TTGGTGCTCTTACTGTTGAA+TGG - tig0024833:9419-9438 Msa1420590:three_prime_UTR 40.0%
CTTACTGTTGAATGGCTTAC+TGG - tig0024833:9427-9446 Msa1420590:three_prime_UTR 40.0%
!! AATGGCTTACTGGTGTTACA+TGG - tig0024833:9437-9456 Msa1420590:three_prime_UTR 40.0%
!! TTTCAGGTTGAGCTAGTAGA+AGG - tig0024833:10212-10231 Msa1420590:intron 40.0%
GTTGTGATAGAGAATGGAAG+TGG + tig0024833:10257-10276 None:intergenic 40.0%
! GGTCAAAGAATTTTCCACCT+GGG + tig0024833:10361-10380 None:intergenic 40.0%
GGAAAATTCTTTGACCCACT+TGG - tig0024833:10365-10384 Msa1420590:intron 40.0%
TGAGTAGCCCAATTGTTAAG+TGG + tig0024833:10509-10528 None:intergenic 40.0%
! TCAATGATGGTAGTGTGAAG+AGG + tig0024833:10542-10561 None:intergenic 40.0%
CATGAAATTTGAGGGCAATG+AGG - tig0024833:10757-10776 Msa1420590:CDS 40.0%
!! AACATTAGGTCGAAGTGTTG+GGG - tig0024833:11064-11083 Msa1420590:intron 40.0%
! CTTTGGAAGTTAGAAGAGGA+TGG - tig0024833:11353-11372 Msa1420590:CDS 40.0%
TTTGGATAACAAGTGGGGTA+CGG - tig0024833:11424-11443 Msa1420590:five_prime_UTR 40.0%
TTATGCTAATGTGAGCAGGG+TGG + tig0024833:8659-8678 None:intergenic 45.0%
GCAGCCACTTCATCATTCAT+CGG - tig0024833:8708-8727 Msa1420590:three_prime_UTR 45.0%
AATTGGATTGAACTTCGCGG+AGG + tig0024833:8740-8759 None:intergenic 45.0%
CCGAATTGGATTGAACTTCG+CGG + tig0024833:8743-8762 None:intergenic 45.0%
CCGCGAAGTTCAATCCAATT+CGG - tig0024833:8740-8759 Msa1420590:three_prime_UTR 45.0%
CGCGAAGTTCAATCCAATTC+GGG - tig0024833:8741-8760 Msa1420590:three_prime_UTR 45.0%
CTTCTTTCCAAAGCCGAATC+GGG + tig0024833:8778-8797 None:intergenic 45.0%
GTACTGGGACTTGATCTTGA+TGG + tig0024833:8819-8838 None:intergenic 45.0%
!! CAGGTACTGATCGTCCATTA+TGG - tig0024833:9116-9135 Msa1420590:three_prime_UTR 45.0%
GGAAGTTTGGTCGGAGATTA+CGG - tig0024833:9172-9191 Msa1420590:three_prime_UTR 45.0%
!! ATTTGGTTTGGGGAAACCAG+CGG - tig0024833:9204-9223 Msa1420590:three_prime_UTR 45.0%
CGACTCGCTTGATCAGAATT+TGG - tig0024833:9246-9265 Msa1420590:three_prime_UTR 45.0%
AATCTTGCCGGAGATGTGAT+CGG - tig0024833:9274-9293 Msa1420590:three_prime_UTR 45.0%
AGATGTGATCGGAACTAGGA+CGG - tig0024833:9285-9304 Msa1420590:three_prime_UTR 45.0%
TACATGGCAAGATGCTGGAA+AGG - tig0024833:9453-9472 Msa1420590:three_prime_UTR 45.0%
CATCAAGCTCAGCATTTCTC+TGG + tig0024833:10322-10341 None:intergenic 45.0%
GCAGAAAAGAGACTATACCC+AGG - tig0024833:10341-10360 Msa1420590:intron 45.0%
GAAAAGAGACTATACCCAGG+TGG - tig0024833:10344-10363 Msa1420590:intron 45.0%
! GGGTCAAAGAATTTTCCACC+TGG + tig0024833:10362-10381 None:intergenic 45.0%
CAAACATGCTCGTCTTGCTA+TGG - tig0024833:10436-10455 Msa1420590:intron 45.0%
! CTTGCTATGGTTGCTTTCCT+TGG - tig0024833:10449-10468 Msa1420590:intron 45.0%
CAGCTTGAACAGCAAAACCA+AGG + tig0024833:10469-10488 None:intergenic 45.0%
TGAGGGCAATGAGGAACATT+AGG - tig0024833:10766-10785 Msa1420590:CDS 45.0%
! AGTTTCTCGCGCGTCTTATT+GGG - tig0024833:10811-10830 Msa1420590:CDS 45.0%
AGGATGAGAAAAGGAGGAGT+CGG - tig0024833:10939-10958 Msa1420590:CDS 45.0%
!!! GCGGCGGAATTTTTTCGTTT+GGG - tig0024833:11259-11278 Msa1420590:CDS 45.0%
AGGATTTGGAGGGTCATGTT+GGG - tig0024833:11309-11328 Msa1420590:CDS 45.0%
!! GTGGCTTTGGAAGTTAGAAG+AGG - tig0024833:11349-11368 Msa1420590:CDS 45.0%
! AGAAGAGGATGGGAGGTTTT+CGG - tig0024833:11364-11383 Msa1420590:CDS 45.0%
AAGCGGTGTTTAGACAAGTG+TGG - tig0024833:11453-11472 Msa1420590:five_prime_UTR 45.0%
TAGACAAGTGTGGAAGAGTC+CGG - tig0024833:11463-11482 Msa1420590:five_prime_UTR 45.0%
! CGTGGAAGCTTTTACTTGAC+CGG - tig0024833:11510-11529 Msa1420590:five_prime_UTR 45.0%
GAATGATGAAGTGGCTGCAG+CGG + tig0024833:8706-8725 None:intergenic 50.0%
!! GGTGCCGATGAATGATGAAG+TGG + tig0024833:8715-8734 None:intergenic 50.0%
GATCGTCCATTATGGTACCC+CGG - tig0024833:9124-9143 Msa1420590:three_prime_UTR 50.0%
! TTTGCTCCGGGGTACCATAA+TGG + tig0024833:9133-9152 None:intergenic 50.0%
AAACTTCCGTCTAGCCACTC+CGG + tig0024833:9160-9179 None:intergenic 50.0%
TGGCTAGACGGAAGTTTGGT+CGG - tig0024833:9163-9182 Msa1420590:three_prime_UTR 50.0%
! GCTGGTTTCCCCAAACCAAA+TGG + tig0024833:9205-9224 None:intergenic 50.0%
CCTAGTTCCGATCACATCTC+CGG + tig0024833:9284-9303 None:intergenic 50.0%
! TGGGCTATGCTTGCTACTCT+TGG - tig0024833:9400-9419 Msa1420590:three_prime_UTR 50.0%
! GGTGTTACATGGCAAGATGC+TGG - tig0024833:9448-9467 Msa1420590:three_prime_UTR 50.0%
GGTCAGATGCTAAGCCAAGT+GGG + tig0024833:10382-10401 None:intergenic 50.0%
CAAGCTGCTGCTACTGGTAA+AGG - tig0024833:10482-10501 Msa1420590:intron 50.0%
AGACGCGCGAGAAACTCATA+GGG + tig0024833:10807-10826 None:intergenic 50.0%
AAGACGCGCGAGAAACTCAT+AGG + tig0024833:10808-10827 None:intergenic 50.0%
GAGTTTCTCGCGCGTCTTAT+TGG - tig0024833:10810-10829 Msa1420590:CDS 50.0%
AGGGCGCGCAAGAAATCAAT+AGG - tig0024833:10919-10938 Msa1420590:CDS 50.0%
CACCTTAAAAGAAGCGACGG+TGG - tig0024833:11187-11206 Msa1420590:intron 50.0%
CTTAAAAGAAGCGACGGTGG+CGG - tig0024833:11190-11209 Msa1420590:intron 50.0%
GTTTGGGTGAATGGCGAGAT+GGG - tig0024833:11215-11234 Msa1420590:intron 50.0%
GAAGGGAGTGGAGGTTTATG+TGG - tig0024833:11237-11256 Msa1420590:intron 50.0%
!!! GGCGGCGGAATTTTTTCGTT+TGG - tig0024833:11258-11277 Msa1420590:CDS 50.0%
GAGGATTTGGAGGGTCATGT+TGG - tig0024833:11308-11327 Msa1420590:CDS 50.0%
TCATGTTGGGTCTCATGAGG+AGG - tig0024833:11322-11341 Msa1420590:CDS 50.0%
ATGAGGAGGATGAGTGGCTT+TGG - tig0024833:11336-11355 Msa1420590:CDS 50.0%
GGAAGTTAGAAGAGGATGGG+AGG - tig0024833:11357-11376 Msa1420590:CDS 50.0%
TGGATTGAACTTCGCGGAGG+CGG + tig0024833:8737-8756 None:intergenic 55.0%
GGCTTGGATCCTACCCGAAT+TGG + tig0024833:8757-8776 None:intergenic 55.0%
GGTAGGATCCAAGCCCGATT+CGG - tig0024833:8762-8781 Msa1420590:three_prime_UTR 55.0%
!! ATCCAAGCCCGATTCGGCTT+TGG - tig0024833:8768-8787 Msa1420590:three_prime_UTR 55.0%
TTCCAAAGCCGAATCGGGCT+TGG + tig0024833:8773-8792 None:intergenic 55.0%
AAGTCACCGGAGTGGCTAGA+CGG - tig0024833:9151-9170 Msa1420590:three_prime_UTR 55.0%
GGAGTGGCTAGACGGAAGTT+TGG - tig0024833:9159-9178 Msa1420590:three_prime_UTR 55.0%
CCGGAGATGTGATCGGAACT+AGG - tig0024833:9281-9300 Msa1420590:three_prime_UTR 55.0%
GGGTCAGATGCTAAGCCAAG+TGG + tig0024833:10383-10402 None:intergenic 55.0%
GCTGTTCAAGCTGCTGCTAC+TGG - tig0024833:10476-10495 Msa1420590:intron 55.0%
! CGCCACCGTCGCTTCTTTTA+AGG + tig0024833:11192-11211 None:intergenic 55.0%
GGTTTGGGTGAATGGCGAGA+TGG - tig0024833:11214-11233 Msa1420590:intron 55.0%
GGTGAATGGCGAGATGGGAA+GGG - tig0024833:11220-11239 Msa1420590:intron 55.0%
GGGAGTGGAGGTTTATGTGG+CGG - tig0024833:11240-11259 Msa1420590:intron 55.0%
AGTGGAGGTTTATGTGGCGG+CGG - tig0024833:11243-11262 Msa1420590:intron 55.0%
GGGTCATGTTGGGTCTCATG+AGG - tig0024833:11319-11338 Msa1420590:CDS 55.0%
GGTCTCATGAGGAGGATGAG+TGG - tig0024833:11330-11349 Msa1420590:CDS 55.0%
GGATAACAAGTGGGGTACGG+AGG - tig0024833:11427-11446 Msa1420590:five_prime_UTR 55.0%
GATAACGCCACTGCCTTCGA+GGG + tig0024833:11491-11510 None:intergenic 55.0%
TGATGAAGTGGCTGCAGCGG+TGG + tig0024833:8703-8722 None:intergenic 60.0%
GGATTGAACTTCGCGGAGGC+GGG + tig0024833:8736-8755 None:intergenic 60.0%
GTACCCCGGAGCAAAGTCAC+CGG - tig0024833:9138-9157 Msa1420590:three_prime_UTR 60.0%
ACTCCGGTGACTTTGCTCCG+GGG + tig0024833:9144-9163 None:intergenic 60.0%
CACTCCGGTGACTTTGCTCC+GGG + tig0024833:9145-9164 None:intergenic 60.0%
CCACTCCGGTGACTTTGCTC+CGG + tig0024833:9146-9165 None:intergenic 60.0%
CGCGCGAGAAACTCATAGGG+TGG + tig0024833:10804-10823 None:intergenic 60.0%
! AAAAGAAGCGACGGTGGCGG+AGG - tig0024833:11193-11212 Msa1420590:intron 60.0%
! GTGGCGGAGGTTTGGGTGAA+TGG - tig0024833:11206-11225 Msa1420590:intron 60.0%
GGGTGAATGGCGAGATGGGA+AGG - tig0024833:11219-11238 Msa1420590:intron 60.0%
ATGGCGAGATGGGAAGGGAG+TGG - tig0024833:11225-11244 Msa1420590:intron 60.0%
GTGGGGTACGGAGGAGAAAG+CGG - tig0024833:11436-11455 Msa1420590:five_prime_UTR 60.0%
CGATAACGCCACTGCCTTCG+AGG + tig0024833:11492-11511 None:intergenic 60.0%
CGAAGGCAGTGGCGTTATCG+TGG - tig0024833:11492-11511 Msa1420590:five_prime_UTR 60.0%
TGAAGTGGCTGCAGCGGTGG+CGG + tig0024833:8700-8719 None:intergenic 65.0%
CCGGAGCAAAGTCACCGGAG+TGG - tig0024833:9143-9162 Msa1420590:three_prime_UTR 65.0%
!! AAGCGACGGTGGCGGAGGTT+TGG - tig0024833:11198-11217 Msa1420590:intron 65.0%
!! AGCGACGGTGGCGGAGGTTT+GGG - tig0024833:11199-11218 Msa1420590:intron 65.0%
GCGAGATGGGAAGGGAGTGG+AGG - tig0024833:11228-11247 Msa1420590:intron 65.0%
GAAGAGTCCGGCACCCTCGA+AGG - tig0024833:11475-11494 Msa1420590:five_prime_UTR 65.0%
TGGCGGTTGCGGCGGCCATT+TGG + tig0024833:8683-8702 None:intergenic 70.0%
TCCGGCACCCTCGAAGGCAG+TGG - tig0024833:11481-11500 Msa1420590:five_prime_UTR 70.0%
! GCCACTGCCTTCGAGGGTGC+CGG + tig0024833:11485-11504 None:intergenic 70.0%
! TGCAGCGGTGGCGGTTGCGG+CGG + tig0024833:8691-8710 None:intergenic 75.0%
! GGCTGCAGCGGTGGCGGTTG+CGG + tig0024833:8694-8713 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
tig0024833 gene 8538 11542 8538 ID=Msa1420590;Name=Msa1420590
tig0024833 mRNA 8538 11542 8538 ID=Msa1420590-mRNA-1;Parent=Msa1420590;Name=Msa1420590-mRNA-1;_AED=0.06;_eAED=0.06;_QI=146|1|1|1|1|1|3|962|289
tig0024833 exon 8538 9862 8538 ID=Msa1420590-mRNA-1:exon:1627;Parent=Msa1420590-mRNA-1
tig0024833 exon 10606 10961 10606 ID=Msa1420590-mRNA-1:exon:1626;Parent=Msa1420590-mRNA-1
tig0024833 exon 11246 11542 11246 ID=Msa1420590-mRNA-1:exon:1625;Parent=Msa1420590-mRNA-1
tig0024833 five_prime_UTR 11397 11542 11397 ID=Msa1420590-mRNA-1:five_prime_utr;Parent=Msa1420590-mRNA-1
tig0024833 CDS 11246 11396 11246 ID=Msa1420590-mRNA-1:cds;Parent=Msa1420590-mRNA-1
tig0024833 CDS 10606 10961 10606 ID=Msa1420590-mRNA-1:cds;Parent=Msa1420590-mRNA-1
tig0024833 CDS 9500 9862 9500 ID=Msa1420590-mRNA-1:cds;Parent=Msa1420590-mRNA-1
tig0024833 three_prime_UTR 8538 9499 8538 ID=Msa1420590-mRNA-1:three_prime_utr;Parent=Msa1420590-mRNA-1
Gene Sequence

>Msa1420590

ATGGCCGCCGCAACCGCCACCGCTGCAGCCACTTCATCATTCATCGGCACCCGCCTCCGCGAAGTTCAATCCAATTCGGGTAGGATCCAAGCCCGATTCGGCTTTGGAAAGAAGAAAGCCGCACCAAAGAAACCATCAAGATCAAGTCCCAGTACTGATCGTCCATTATGGTACCCCGGAGCAAAGTCACCGGAGTGGCTAGACGGAAGTTTGGTCGGAGATTACGGATTTGATCCATTTGGTTTGGGGAAACCAGCGGAGTATTTGCAATTTGATCTCGACTCGCTTGATCAGAATTTGGCGAAGAATCTTGCCGGAGATGTGATCGGAACTAGGACGGAGTTTGCTGATGTGAAATCAACTCCATTTCAGCCTTACAGTGAAGTATTTGGACTTCAGAGGTTTAGGGAATGTGAGTTGATTCATGGTAGATGGGCTATGCTTGCTACTCTTGGTGCTCTTACTGTTGAATGGCTTACTGGTGTTACATGGCAAGATGCTGGAAAGGTTGAGCTAGTAGAAGGATCAACATATCTTGGACAACCACTTCCATTCTCTATCACAACACTTATCTGGATCGAAGTTCTAGTAATTGGCTACATTGAATTCCAGAGAAATGCTGAGCTTGATGCAGAAAAGAGACTATACCCAGGTGGAAAATTCTTTGACCCACTTGGCTTAGCATCTGACCCAGAAAAGAAAGCAACACTTCAATTGGCAGAAATCAAACATGCTCGTCTTGCTATGGTTGCTTTCCTTGGTTTTGCTGTTCAAGCTGCTGCTACTGGTAAAGGACCACTTAACAATTGGGCTACTCATTTGAGTGATCCTCTTCACACTACCATCATTGATACCTTTTCTTCCTCTTAG
Protein sequence

>Msa1420590

MAAATATAAATSSFIGTRLREVQSNSGRIQARFGFGKKKAAPKKPSRSSPSTDRPLWYPGAKSPEWLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRTEFADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVEGSTYLGQPLPFSITTLIWIEVLVIGYIEFQRNAELDAEKRLYPGGKFFDPLGLASDPEKKATLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSS*