AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0169320


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0169320 MtrunA17_Chr1g0186021 85.149 505 45 4 1 476 1 504 0.0 846
Msa0169320 MtrunA17_Chr1g0173891 36.890 328 186 5 129 439 1 324 5.52e-63 209
Msa0169320 MtrunA17_Chr8g0380251 35.795 352 201 6 106 439 98 442 9.42e-60 203
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0169320 AT4G17740.1 76.276 392 77 2 99 476 126 515 0.0 617
Msa0169320 AT4G17740.2 76.276 392 77 2 99 476 116 505 0.0 617
Msa0169320 AT3G57680.1 37.183 355 196 7 107 439 121 470 3.46e-69 229
Msa0169320 AT3G57680.3 38.006 321 173 6 140 439 6 321 6.39e-62 206
Msa0169320 AT3G57680.2 38.006 321 173 6 140 439 6 321 6.39e-62 206
Msa0169320 AT5G46390.2 35.593 354 193 8 109 439 125 466 4.41e-53 186
Msa0169320 AT5G46390.1 31.760 233 138 7 109 332 125 345 2.25e-25 108

Find 124 sgRNAs with CRISPR-Local

Find 483 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAACAAAACAAAATTATTT+TGG 0.166886 1_4:-52528430 Msa0169320:three_prime_UTR
GGAAGAGAATCTCCTCTTTC+TGG 0.228002 1_4:-52534224 Msa0169320:CDS
ACAACTTACGAGATGCATTT+TGG 0.229630 1_4:+52531395 None:intergenic
TTCTGGCAGGTTTATTTGTT+TGG 0.248338 1_4:+52528293 None:intergenic
TAATGTAAATGCATTTGTTT+TGG 0.265017 1_4:-52530490 Msa0169320:CDS
AAACAAACGTTGTTTACTTT+TGG 0.274441 1_4:+52535282 None:intergenic
CTGTTTGTGCGGTTGGTTGC+TGG 0.295497 1_4:-52535186 Msa0169320:CDS
TGTCTCTTCACGGTTGTTCA+TGG 0.323178 1_4:+52534108 None:intergenic
TTCTTTACTGTTTGTGCGGT+TGG 0.354326 1_4:-52535193 Msa0169320:CDS
ATTGTGAACAATCCCCATTC+TGG 0.356722 1_4:+52528276 None:intergenic
TAGTGAGTGGTTTGAGGCAG+AGG 0.361449 1_4:-52535574 Msa0169320:five_prime_UTR
GGAACTAAAGGCGCTCTAAC+TGG 0.372863 1_4:-52532847 Msa0169320:CDS
ACAAATAAACCTGCCAGAAT+GGG 0.376363 1_4:-52528289 Msa0169320:three_prime_UTR
CAAAATGCATCTTCATCCTT+AGG 0.378658 1_4:+52528556 None:intergenic
TGTTGGCTCTCCGTACAATA+TGG 0.382476 1_4:+52528887 None:intergenic
AACAAATAAACCTGCCAGAA+TGG 0.385953 1_4:-52528290 Msa0169320:three_prime_UTR
TTAATGGACAGAGTTGGTTT+AGG 0.396696 1_4:-52534159 Msa0169320:CDS
TCGTGGGGTTCGAGATATAC+TGG 0.396807 1_4:-52529946 Msa0169320:CDS
TCCTTCGCAGAAGGAGGAAA+TGG 0.400373 1_4:-52535242 Msa0169320:CDS
TTATGCTGCAGGTTTCAAAC+TGG 0.418269 1_4:-52535392 Msa0169320:intron
ATCGGATGGCATGTCTGCTT+TGG 0.427225 1_4:+52532798 None:intergenic
GCTCTATATGCAGGACCTCC+TGG 0.429225 1_4:+52532751 None:intergenic
TTGTACGGAGAGCCAACATT+TGG 0.429603 1_4:-52528882 Msa0169320:CDS
TTCTGAACCTCTGGCTGTGC+TGG 0.435964 1_4:-52529895 Msa0169320:intron
CTGAGAGCTCAAATACTGAT+TGG 0.437609 1_4:+52528767 None:intergenic
GATGTTGGTAGAGGATGGTC+AGG 0.439793 1_4:+52528583 None:intergenic
TTCTGTGCTCATATCATCAA+TGG 0.441209 1_4:+52532699 None:intergenic
GTTGTCATTTCAGCTTCTCC+AGG 0.446510 1_4:-52532769 Msa0169320:CDS
CCTAGCAACTTCTGAACCTC+TGG 0.447872 1_4:-52529904 Msa0169320:CDS
ACTGGAGTGGGGATATCAAT+AGG 0.449955 1_4:-52532829 Msa0169320:CDS
ATTTACCCCTTTCCAAATGT+TGG 0.453291 1_4:+52528870 None:intergenic
AGAGGAGATTCTCTTCCGTC+AGG 0.456230 1_4:+52534230 None:intergenic
TTGCACAGTCTTGACTTCAC+TGG 0.459820 1_4:+52531478 None:intergenic
TGATATGAGCACAGAAAAGT+TGG 0.461597 1_4:-52532692 Msa0169320:CDS
GTCTCTTCACGGTTGTTCAT+GGG 0.462782 1_4:+52534109 None:intergenic
CTCAAACTTCTGAACTTCTC+AGG 0.466160 1_4:+52532982 None:intergenic
CCAGAGGTTCAGAAGTTGCT+AGG 0.467344 1_4:+52529904 None:intergenic
AAGAAGCAATCAATACGTTC+AGG 0.477783 1_4:-52530518 Msa0169320:CDS
TTCTCCACGCCTCCAGAAAG+AGG 0.478035 1_4:+52534212 None:intergenic
GGGGAATTATTTCCTGCAGC+AGG 0.481562 1_4:+52531451 None:intergenic
TGCTCATATCATCAATGGCC+AGG 0.482743 1_4:+52532704 None:intergenic
TGAGAAGTTCAGAAGTTTGA+GGG 0.485226 1_4:-52532980 Msa0169320:intron
TGTATATTTGTGATAGTCGT+GGG 0.489052 1_4:-52529962 Msa0169320:CDS
CATATGTATCCAGAGGTTTG+TGG 0.494939 1_4:+52528377 None:intergenic
GATGGCATGTCTGCTTTGGT+AGG 0.496814 1_4:+52532802 None:intergenic
AAGTCATACATGTCTCTTCA+CGG 0.503051 1_4:+52534098 None:intergenic
AAGAAAGATGCTTGCCACAT+TGG 0.503483 1_4:-52533031 Msa0169320:CDS
CTTGTTATCTTTCAATGCAC+CGG 0.503714 1_4:+52528914 None:intergenic
TGAACAATCCCCATTCTGGC+AGG 0.504596 1_4:+52528280 None:intergenic
GTTCTGCCTTCACTCTTCCA+TGG 0.505286 1_4:-52535545 Msa0169320:exon
ACAATGTTGCCACAAACCTC+TGG 0.505687 1_4:-52528386 Msa0169320:three_prime_UTR
TGAGTGGTTTGAGGCAGAGG+TGG 0.512701 1_4:-52535571 Msa0169320:five_prime_UTR
TTTGTCTGGAGATGTTATCC+TGG 0.515590 1_4:-52532722 Msa0169320:CDS
GGAAATTACAGAGGACCTGA+TGG 0.515701 1_4:-52531893 Msa0169320:intron
CTGTGCAAGTTACCTGCTGC+AGG 0.516744 1_4:-52531463 Msa0169320:CDS
ACAAGATAGTGAGTGGTTTG+AGG 0.519579 1_4:-52535580 Msa0169320:five_prime_UTR
TGGAGTTATGTTGGTTGTGT+CGG 0.520837 1_4:-52535166 Msa0169320:intron
AAAGGCGCTCTAACTGGAGT+GGG 0.521920 1_4:-52532841 Msa0169320:CDS
GGAAATAATTCCCCAACAGT+TGG 0.525940 1_4:-52531442 Msa0169320:CDS
GTTGGTTGCTGGAGTTATGT+TGG 0.526117 1_4:-52535175 Msa0169320:CDS
CAGAGGTTCAGAAGTTGCTA+GGG 0.526166 1_4:+52529905 None:intergenic
TGGTTTGAGGCAGAGGTGGT+AGG 0.527360 1_4:-52535567 Msa0169320:five_prime_UTR
AATGCAACAGAGCTTCCATC+AGG 0.527673 1_4:+52531878 None:intergenic
GTCCCTTGAAGGGGCCCTGA+CGG 0.534821 1_4:-52534245 Msa0169320:intron
CTGAGAAGTTCAGAAGTTTG+AGG 0.536007 1_4:-52532981 Msa0169320:CDS
TTATTATTACACGAAGAAGC+AGG 0.538054 1_4:+52528517 None:intergenic
GTGTATATTTGTGATAGTCG+TGG 0.539212 1_4:-52529963 Msa0169320:CDS
GGAGAGCCAACATTTGGAAA+GGG 0.540966 1_4:-52528876 Msa0169320:CDS
TGAAAACCTTGATTCTACTA+CGG 0.541823 1_4:+52535359 None:intergenic
ATCTCCTCTTTCTGGAGGCG+TGG 0.545789 1_4:-52534216 Msa0169320:CDS
TGAAGGCAGTCTGGAACTAA+AGG 0.547910 1_4:-52532859 Msa0169320:intron
GTTGGAGTTTCCTTCGCAGA+AGG 0.548560 1_4:-52535251 Msa0169320:CDS
TTTGAGCTCTCAGATGGCTC+AGG 0.548752 1_4:-52528757 Msa0169320:CDS
ACGAAGAAGCAGGATCCTGC+AGG 0.552016 1_4:+52528527 None:intergenic
AGAGCTAGCAATGATCTCCA+TGG 0.553066 1_4:+52535528 None:intergenic
GAAATGATGTTGGTAGAGGA+TGG 0.553668 1_4:+52528578 None:intergenic
GGGTAACGAAGAGGGAAAGA+AGG 0.553709 1_4:+52535496 None:intergenic
TTAGGAAATGATGTTGGTAG+AGG 0.554141 1_4:+52528574 None:intergenic
TCCATTTCCTCCTTCTGCGA+AGG 0.555474 1_4:+52535241 None:intergenic
GTCATTTCAGCTTCTCCAGG+AGG 0.556960 1_4:-52532766 Msa0169320:CDS
AACAAGCGGGCCATATTGTA+CGG 0.558030 1_4:-52528897 Msa0169320:CDS
CGGAGAGCCAACATTTGGAA+AGG 0.566039 1_4:-52528877 Msa0169320:CDS
AATTCTTGTCGATATATGCT+CGG 0.570307 1_4:+52534182 None:intergenic
GGAGGTCCTGCATATAGAGC+TGG 0.574441 1_4:-52532748 Msa0169320:CDS
TACGTCAGAACCACTACGTA+TGG 0.575100 1_4:+52531853 None:intergenic
GGAGTTTCCTTCGCAGAAGG+AGG 0.575657 1_4:-52535248 Msa0169320:CDS
TCTACCAACATCATTTCCTA+AGG 0.576557 1_4:-52528572 Msa0169320:CDS
AAAACACCAGCTCTATATGC+AGG 0.578644 1_4:+52532742 None:intergenic
TCAGTATTTGAGCTCTCAGA+TGG 0.579199 1_4:-52528763 Msa0169320:CDS
TGAGCCTAATCAGGTAAACA+AGG 0.584513 1_4:-52528964 Msa0169320:intron
ATGGCATGTCTGCTTTGGTA+GGG 0.587538 1_4:+52532803 None:intergenic
CAGAAGGAGGAAATGGAACA+AGG 0.588765 1_4:-52535235 Msa0169320:CDS
AGTGCCAGCGAAATATTAGC+CGG 0.591253 1_4:-52528933 Msa0169320:CDS
TGCACCGGCTAATATTTCGC+TGG 0.596104 1_4:+52528929 None:intergenic
GATATGAGCACAGAAAAGTT+GGG 0.598281 1_4:-52532691 Msa0169320:CDS
CAAATAAACCTGCCAGAATG+GGG 0.598520 1_4:-52528288 Msa0169320:three_prime_UTR
GAGGAGATTCTCTTCCGTCA+GGG 0.599213 1_4:+52534231 None:intergenic
TGCATTGAAAGATAACAAGC+GGG 0.604470 1_4:-52528910 Msa0169320:CDS
CGAGATATACTGGATACAGA+TGG 0.605141 1_4:-52529936 Msa0169320:CDS
TCATCCTTAGGAAATGATGT+TGG 0.609434 1_4:+52528568 None:intergenic
TAAAGGCGCTCTAACTGGAG+TGG 0.610725 1_4:-52532842 Msa0169320:CDS
GTGCATTGAAAGATAACAAG+CGG 0.614192 1_4:-52528911 Msa0169320:CDS
ATGCTTCTTTACTGTTTGTG+CGG 0.614941 1_4:-52535197 Msa0169320:CDS
TACCAACTTACGTTAGAGCT+AGG 0.615400 1_4:+52531825 None:intergenic
AAAGCAGACATGCCATCCGA+TGG 0.615475 1_4:-52532796 Msa0169320:CDS
TGAAATGACAACAAGTCCAT+CGG 0.616320 1_4:+52532780 None:intergenic
TCCCGAAAATTGAACTAACT+AGG 0.617585 1_4:-52528326 Msa0169320:three_prime_UTR
AGATTGTTGGGTAACGAAGA+GGG 0.618034 1_4:+52535488 None:intergenic
TGATCTCCATGGAAGAGTGA+AGG 0.622114 1_4:+52535539 None:intergenic
TTGTCAATATCTGTGTGCGC+AGG 0.623787 1_4:+52528703 None:intergenic
AAAAGAAACAAGATAGTGAG+TGG 0.624117 1_4:-52535587 Msa0169320:five_prime_UTR
AGAGAATCTCCTCTTTCTGG+AGG 0.626964 1_4:-52534221 Msa0169320:CDS
GAGATTGTTGGGTAACGAAG+AGG 0.630735 1_4:+52535487 None:intergenic
GAGAGCCAACATTTGGAAAG+GGG 0.642449 1_4:-52528875 Msa0169320:intron
TAAATCACCTATTATCTCTG+AGG 0.651600 1_4:+52530466 None:intergenic
ATGACAACAAGTCCATCGGA+TGG 0.653408 1_4:+52532784 None:intergenic
AAAATTACCAGCACAGCCAG+AGG 0.668041 1_4:+52529888 None:intergenic
GAGCCTAATCAGGTAAACAA+GGG 0.673106 1_4:-52528963 Msa0169320:intron
GTTGCATTGACCATACGTAG+TGG 0.683901 1_4:-52531863 Msa0169320:CDS
CTATCAATTAGGTTGGACAA+AGG 0.690063 1_4:-52529993 Msa0169320:intron
AAGGCGCTCTAACTGGAGTG+GGG 0.697650 1_4:-52532840 Msa0169320:CDS
GTATATTTGTGATAGTCGTG+GGG 0.714608 1_4:-52529961 Msa0169320:CDS
TGCGCACACAGATATTGACA+AGG 0.734805 1_4:-52528701 Msa0169320:intron
AGTGAAGGGATCATCCAATG+TGG 0.753176 1_4:+52533017 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTAAATTAAATAAAAT+AGG + chr1_4:52528318-52528337 None:intergenic 0.0%
!!! TGAATGTTTTTAAATTTTTA+TGG - chr1_4:52532797-52532816 Msa0169320:CDS 10.0%
!! AAAAAATACAAAAAATTAGT+TGG - chr1_4:52533135-52533154 Msa0169320:intron 10.0%
!! TAAAAACAAGAAAAAAAATA+AGG + chr1_4:52533886-52533905 None:intergenic 10.0%
!!! TATTTTCAAAATGATTTTTT+TGG - chr1_4:52535462-52535481 Msa0169320:intron 10.0%
!!! ATTTTCAAAATGATTTTTTT+GGG - chr1_4:52535463-52535482 Msa0169320:intron 10.0%
!!! TTAACAAAACAAAATTATTT+TGG - chr1_4:52535509-52535528 Msa0169320:CDS 10.0%
!!! ATAAATATTGTTATTTTACG+CGG + chr1_4:52528531-52528550 None:intergenic 15.0%
!!! AAAGTTACTAAATTTTCAAT+TGG - chr1_4:52528627-52528646 Msa0169320:intron 15.0%
!!! AAGTTACTAAATTTTCAATT+GGG - chr1_4:52528628-52528647 Msa0169320:intron 15.0%
!!! AAAGTATTAACTATTGAATA+TGG - chr1_4:52529509-52529528 Msa0169320:intron 15.0%
!!! ACTCTTTATTTTCTTATTAA+TGG - chr1_4:52529545-52529564 Msa0169320:intron 15.0%
!! TTGATAAAAAAAAAAGTAAG+AGG + chr1_4:52529877-52529896 None:intergenic 15.0%
!! TTAAACTTTAAGTATCAAAA+TGG - chr1_4:52530693-52530712 Msa0169320:intron 15.0%
!!! TTCAACAAAATTTTAGTTTT+TGG + chr1_4:52531064-52531083 None:intergenic 15.0%
!!! AAAAACTAAAATTTTGTTGA+AGG - chr1_4:52531063-52531082 Msa0169320:intron 15.0%
!! TGATAACTTGATATAAATAT+TGG - chr1_4:52531476-52531495 Msa0169320:CDS 15.0%
!!! ATAAAATTTGGTCTTTTAAA+TGG + chr1_4:52531971-52531990 None:intergenic 15.0%
!!! ATTTTCTTTGTAAAAGAAAA+AGG + chr1_4:52532343-52532362 None:intergenic 15.0%
!!! TCTTTAAAATATTCATTAAC+TGG + chr1_4:52532769-52532788 None:intergenic 15.0%
!!! AATTTTTTATCTTATCATTC+CGG - chr1_4:52533682-52533701 Msa0169320:intron 15.0%
!! AGAAATTAAATAATTGTAAC+CGG + chr1_4:52533704-52533723 None:intergenic 15.0%
!! AATCAATTTAATTGTGATTA+TGG - chr1_4:52534809-52534828 Msa0169320:intron 15.0%
!! ATCAATTTAATTGTGATTAT+GGG - chr1_4:52534810-52534829 Msa0169320:intron 15.0%
!! GTGTAATAATAATAATAACA+GGG - chr1_4:52535433-52535452 Msa0169320:intron 15.0%
!!! AAAATCATTTTGAAAATAAC+TGG + chr1_4:52535460-52535479 None:intergenic 15.0%
!!! AGTTACTAAATTTTCAATTG+GGG - chr1_4:52528629-52528648 Msa0169320:intron 20.0%
!! TCTTTATAATGAATTTGTGT+TGG - chr1_4:52528850-52528869 Msa0169320:intron 20.0%
!! CTGAATATTCAATACTAAAA+TGG - chr1_4:52529388-52529407 Msa0169320:intron 20.0%
!!! TATTTTCTTATTAATGGTTG+AGG - chr1_4:52529551-52529570 Msa0169320:intron 20.0%
!!! TATATCGACAAGAATTTTAA+TGG - chr1_4:52529764-52529783 Msa0169320:intron 20.0%
!! TAAAATGGTTTAACTGAAAT+CGG - chr1_4:52530038-52530057 Msa0169320:intron 20.0%
!! TTATCATTGTTAATTATGAG+AGG - chr1_4:52530546-52530565 Msa0169320:intron 20.0%
!! CTATATGTGAAATAAACTAA+GGG + chr1_4:52531011-52531030 None:intergenic 20.0%
!! ACTATATGTGAAATAAACTA+AGG + chr1_4:52531012-52531031 None:intergenic 20.0%
!! AAAAGAGACTTAGAATTAAA+TGG - chr1_4:52531746-52531765 Msa0169320:intron 20.0%
!! AATGGTCTATCTATTATATA+TGG - chr1_4:52531764-52531783 Msa0169320:intron 20.0%
!!! GAAAAAGGTATCAATTAATT+AGG + chr1_4:52532328-52532347 None:intergenic 20.0%
!!! ATTTTATATAACCAACTGTT+GGG + chr1_4:52532511-52532530 None:intergenic 20.0%
!!! AATTTTATATAACCAACTGT+TGG + chr1_4:52532512-52532531 None:intergenic 20.0%
!! TTCTATGTACTAACTAAAAA+AGG - chr1_4:52532597-52532616 Msa0169320:intron 20.0%
!! TCTATGTACTAACTAAAAAA+GGG - chr1_4:52532598-52532617 Msa0169320:intron 20.0%
!! ATTATAGCAAGTAAGAATTA+TGG + chr1_4:52532691-52532710 None:intergenic 20.0%
!!! GATTGTTTCTCTTTATATTT+AGG - chr1_4:52532908-52532927 Msa0169320:intron 20.0%
!! TGAAAAGTAAAATGTGATAT+TGG + chr1_4:52533004-52533023 None:intergenic 20.0%
!!! TAATGTAAATGCATTTGTTT+TGG - chr1_4:52533449-52533468 Msa0169320:intron 20.0%
!! ATCTATTTCAAAATGGTAAA+AGG + chr1_4:52533796-52533815 None:intergenic 20.0%
!! ATGAGAAAATATGTTATCTA+CGG + chr1_4:52534448-52534467 None:intergenic 20.0%
!!! ATATTTTCTCATCTAATTCA+TGG - chr1_4:52534456-52534475 Msa0169320:intron 20.0%
!! CCAAATATACAAAGTATAAA+CGG + chr1_4:52534507-52534526 None:intergenic 20.0%
!!! ATCACAATTAAATTGATTCA+TGG + chr1_4:52534807-52534826 None:intergenic 20.0%
!! TCAATTTAATTGTGATTATG+GGG - chr1_4:52534811-52534830 Msa0169320:intron 20.0%
!! CGTGTAATAATAATAATAAC+AGG - chr1_4:52535432-52535451 Msa0169320:intron 20.0%
! ATAATCAGAATGATGAAGAA+GGG + chr1_4:52528505-52528524 None:intergenic 25.0%
! AATAATCAGAATGATGAAGA+AGG + chr1_4:52528506-52528525 None:intergenic 25.0%
! AATAACAATATTTATGCTGC+AGG - chr1_4:52528536-52528555 Msa0169320:CDS 25.0%
!! AAACAAACGTTGTTTACTTT+TGG + chr1_4:52528660-52528679 None:intergenic 25.0%
! AGAGATAAAACTTACAAGAA+GGG + chr1_4:52528818-52528837 None:intergenic 25.0%
! TAGAGATAAAACTTACAAGA+AGG + chr1_4:52528819-52528838 None:intergenic 25.0%
! AATGAATTTGTGTTGGAATT+TGG - chr1_4:52528857-52528876 Msa0169320:intron 25.0%
! ATGAATTTGTGTTGGAATTT+GGG - chr1_4:52528858-52528877 Msa0169320:intron 25.0%
! TCAGAATGAATTACAAAGAT+AGG + chr1_4:52529372-52529391 None:intergenic 25.0%
! CAAGAGTAAGAGATAAATTT+CGG + chr1_4:52529437-52529456 None:intergenic 25.0%
! ATATAGTACTAGGTAGATTT+GGG + chr1_4:52529594-52529613 None:intergenic 25.0%
! TATATAGTACTAGGTAGATT+TGG + chr1_4:52529595-52529614 None:intergenic 25.0%
!! GCTGAACAAAAACAATTTTA+TGG - chr1_4:52529900-52529919 Msa0169320:CDS 25.0%
! TTAACTATATCAGATAGTTC+TGG + chr1_4:52530147-52530166 None:intergenic 25.0%
! TATCTGATATAGTTAAATGC+TGG - chr1_4:52530151-52530170 Msa0169320:intron 25.0%
! TAATCTACAACAAATTGCTT+TGG - chr1_4:52530189-52530208 Msa0169320:intron 25.0%
! TCAAATTTGTGAAGATAAGT+AGG - chr1_4:52530262-52530281 Msa0169320:intron 25.0%
!!! CAGGAAAGTTTTTTTTAAGT+AGG - chr1_4:52530806-52530825 Msa0169320:intron 25.0%
! TAGTAATACTTTCAACTTGT+TGG + chr1_4:52531447-52531466 None:intergenic 25.0%
! TTCCATTGTTGTAGATAAAA+AGG - chr1_4:52531636-52531655 Msa0169320:intron 25.0%
!! TACCTTTTTATCTACAACAA+TGG + chr1_4:52531641-52531660 None:intergenic 25.0%
!! CTAAGTCTCTTTTCATAATT+CGG + chr1_4:52531739-52531758 None:intergenic 25.0%
!! TATTGACTACATGGATTTAA+CGG + chr1_4:52531812-52531831 None:intergenic 25.0%
! GTAATTAAGAACCTCATAAA+TGG + chr1_4:52531928-52531947 None:intergenic 25.0%
!! ATGAGAAGTGCAATAAAATT+TGG + chr1_4:52531983-52532002 None:intergenic 25.0%
! TATTATTACCATTACTTGAG+AGG - chr1_4:52532302-52532321 Msa0169320:intron 25.0%
!! TTTTATATAACCAACTGTTG+GGG + chr1_4:52532510-52532529 None:intergenic 25.0%
! ATCACATGATTAATGCATAT+TGG + chr1_4:52532636-52532655 None:intergenic 25.0%
!!! ATGTATTGATGCCTTTTTTT+TGG - chr1_4:52533035-52533054 Msa0169320:CDS 25.0%
! AACACTATTCACCAAAAAAA+AGG + chr1_4:52533049-52533068 None:intergenic 25.0%
! GAGGAATAGAAAATTGTTAT+CGG + chr1_4:52533101-52533120 None:intergenic 25.0%
! TATTAAATTCGGTCATTAGT+TGG - chr1_4:52533261-52533280 Msa0169320:intron 25.0%
!! TAGTGATTGAAAGTATATAG+AGG + chr1_4:52533513-52533532 None:intergenic 25.0%
!! ATTATTTAATTTCTGCAGCA+TGG - chr1_4:52533710-52533729 Msa0169320:intron 25.0%
! CAATGCAATCTATTTCAAAA+TGG + chr1_4:52533803-52533822 None:intergenic 25.0%
! AATAGATTGCATTGCAAAAT+TGG - chr1_4:52533809-52533828 Msa0169320:intron 25.0%
! ATAGATTGCATTGCAAAATT+GGG - chr1_4:52533810-52533829 Msa0169320:intron 25.0%
! GAAAAAAAATAAGGTATGAC+TGG + chr1_4:52533877-52533896 None:intergenic 25.0%
! TCTAACAGATACTATCAATT+AGG - chr1_4:52533935-52533954 Msa0169320:intron 25.0%
! CCGTTTATACTTTGTATATT+TGG - chr1_4:52534504-52534523 Msa0169320:intron 25.0%
! CATTTCTTAATAAACTGTCA+TGG - chr1_4:52534585-52534604 Msa0169320:intron 25.0%
! TTAATAAACTGTCATGGATT+TGG - chr1_4:52534591-52534610 Msa0169320:intron 25.0%
! CTCTCATTTCATAGTTATTT+AGG - chr1_4:52534650-52534669 Msa0169320:intron 25.0%
!!! TAAGTGAAACTACTAGTTTT+AGG - chr1_4:52534684-52534703 Msa0169320:intron 25.0%
! TTACCATACAATTGACAAAT+TGG + chr1_4:52534935-52534954 None:intergenic 25.0%
AAAAGAAACAAGATAGTGAG+TGG - chr1_4:52528352-52528371 Msa0169320:three_prime_UTR 30.0%
TAATCAGAATGATGAAGAAG+GGG + chr1_4:52528504-52528523 None:intergenic 30.0%
TGAAAACCTTGATTCTACTA+CGG + chr1_4:52528583-52528602 None:intergenic 30.0%
! TACTAAATTTTCAATTGGGG+TGG - chr1_4:52528632-52528651 Msa0169320:intron 30.0%
TCATGTTTGTATCAGACTTT+CGG - chr1_4:52528986-52529005 Msa0169320:intron 30.0%
!! TTAGAAGTTTGTTATGCCAT+CGG - chr1_4:52529125-52529144 Msa0169320:intron 30.0%
TGAGTATCTCTATTTCATGT+GGG - chr1_4:52529257-52529276 Msa0169320:intron 30.0%
TCGATAAGTGAAATGAATGT+AGG + chr1_4:52529284-52529303 None:intergenic 30.0%
TAATCTACACAATCCATGAA+AGG + chr1_4:52529466-52529485 None:intergenic 30.0%
CACTACTAGTATATAGTACT+AGG + chr1_4:52529604-52529623 None:intergenic 30.0%
CTAGTACTATATACTAGTAG+TGG - chr1_4:52529602-52529621 Msa0169320:intron 30.0%
!!! ATTCTTTTTTGTCCCTTGAA+GGG - chr1_4:52529684-52529703 Msa0169320:intron 30.0%
AATTCTTGTCGATATATGCT+CGG + chr1_4:52529760-52529779 None:intergenic 30.0%
!! AGAATTTTAATGGACAGAGT+TGG - chr1_4:52529774-52529793 Msa0169320:intron 30.0%
ATCATTTATGATTGCCTTCT+AGG - chr1_4:52529950-52529969 Msa0169320:CDS 30.0%
TCATTTATGATTGCCTTCTA+GGG - chr1_4:52529951-52529970 Msa0169320:CDS 30.0%
TAGAGAGAACTTATGTTTGA+TGG - chr1_4:52530079-52530098 Msa0169320:intron 30.0%
!! ACAAATTGCTTTGGATTAGT+TGG - chr1_4:52530198-52530217 Msa0169320:intron 30.0%
TATGCATGATAACATCTTCA+TGG - chr1_4:52530324-52530343 Msa0169320:intron 30.0%
ATGCATGATAACATCTTCAT+GGG - chr1_4:52530325-52530344 Msa0169320:intron 30.0%
TCCACAGAATAAAAATGGAA+TGG - chr1_4:52530430-52530449 Msa0169320:intron 30.0%
!! ACCATTCCATTTTTATTCTG+TGG + chr1_4:52530434-52530453 None:intergenic 30.0%
TCACATAGATCAGATATATG+TGG + chr1_4:52530582-52530601 None:intergenic 30.0%
CTTTAAGTATCAAAATGGAG+TGG - chr1_4:52530698-52530717 Msa0169320:intron 30.0%
!! TTGTAAACTTTTGACTGCAT+AGG + chr1_4:52530841-52530860 None:intergenic 30.0%
ATGCAACTTTACAGTTCTTA+AGG + chr1_4:52531518-52531537 None:intergenic 30.0%
! CTGAGATGAGAATTTTATGT+TGG - chr1_4:52531552-52531571 Msa0169320:intron 30.0%
! ATGAGAATTTTATGTTGGAC+AGG - chr1_4:52531557-52531576 Msa0169320:intron 30.0%
ACAGGTAGTCATACTAAAAT+AGG - chr1_4:52531575-52531594 Msa0169320:intron 30.0%
GAGAAATAGTTAGAGGAAAA+GGG - chr1_4:52531693-52531712 Msa0169320:intron 30.0%
GTAACAAAGCATATTCTCTA+AGG + chr1_4:52532174-52532193 None:intergenic 30.0%
AAGATGAATCAATGCATTTC+AGG - chr1_4:52532417-52532436 Msa0169320:intron 30.0%
!!! ACTTGCTATAATCCTCATTT+TGG - chr1_4:52532699-52532718 Msa0169320:CDS 30.0%
CTCTTTACTATACCAAAATG+AGG + chr1_4:52532714-52532733 None:intergenic 30.0%
TTAACTGGTCAAACTTCATA+TGG + chr1_4:52532754-52532773 None:intergenic 30.0%
AATAAATAAGACAGCTGCAA+GGG + chr1_4:52532969-52532988 None:intergenic 30.0%
AAATAAATAAGACAGCTGCA+AGG + chr1_4:52532970-52532989 None:intergenic 30.0%
!! AATAGTGTTTTTCGATGTCT+AGG - chr1_4:52533060-52533079 Msa0169320:intron 30.0%
!! ATAGTGTTTTTCGATGTCTA+GGG - chr1_4:52533061-52533080 Msa0169320:intron 30.0%
! TTTTTGCAACTATCATTCAG+AGG + chr1_4:52533120-52533139 None:intergenic 30.0%
TTAGTTGGATTGATGCTTAA+TGG - chr1_4:52533150-52533169 Msa0169320:intron 30.0%
TAAATCACCTATTATCTCTG+AGG + chr1_4:52533476-52533495 None:intergenic 30.0%
! CATCCATTGCATATCAATTT+TGG - chr1_4:52533636-52533655 Msa0169320:intron 30.0%
AAAAAATAAGGTATGACTGG+AGG + chr1_4:52533874-52533893 None:intergenic 30.0%
ACAGATACTATCAATTAGGT+TGG - chr1_4:52533939-52533958 Msa0169320:intron 30.0%
TGTATATTTGTGATAGTCGT+GGG - chr1_4:52533977-52533996 Msa0169320:intron 30.0%
! TGTTTTCTTCATGTACTAGT+TGG - chr1_4:52534169-52534188 Msa0169320:CDS 30.0%
TTGGGTAGATAATAGATATG+TGG - chr1_4:52534292-52534311 Msa0169320:intron 30.0%
TGGGTAGATAATAGATATGT+GGG - chr1_4:52534293-52534312 Msa0169320:intron 30.0%
ATTGTGATTATGGGGAAAAT+AGG - chr1_4:52534819-52534838 Msa0169320:intron 30.0%
TTGTGATTATGGGGAAAATA+GGG - chr1_4:52534820-52534839 Msa0169320:intron 30.0%
ACAATTGACAAATTGGAACT+CGG + chr1_4:52534928-52534947 None:intergenic 30.0%
GTTCCAATTTGTCAATTGTA+TGG - chr1_4:52534929-52534948 Msa0169320:intron 30.0%
TAAATATCTTGAGCCTAATC+AGG - chr1_4:52534966-52534985 Msa0169320:intron 30.0%
TTATTATTACACGAAGAAGC+AGG + chr1_4:52535425-52535444 None:intergenic 30.0%
! TAGTTTTCATATGTATCCAG+AGG + chr1_4:52535572-52535591 None:intergenic 30.0%
! TCCTAGTTAGTTCAATTTTC+GGG + chr1_4:52535617-52535636 None:intergenic 30.0%
! GTCCTAGTTAGTTCAATTTT+CGG + chr1_4:52535618-52535637 None:intergenic 30.0%
! GTTTTTCCGTAGTAGAATCA+AGG - chr1_4:52528574-52528593 Msa0169320:CDS 35.0%
! CATTTTCACTCACACATAAG+AGG - chr1_4:52528601-52528620 Msa0169320:intron 35.0%
!! ACGTTTGTTTTCCTCAAAGT+TGG - chr1_4:52528670-52528689 Msa0169320:intron 35.0%
ATGCTTCTTTACTGTTTGTG+CGG - chr1_4:52528742-52528761 Msa0169320:CDS 35.0%
TCTGATACAAACATGAACAC+CGG + chr1_4:52528982-52529001 None:intergenic 35.0%
TGATTAAGTAACTAGACCGA+TGG + chr1_4:52529144-52529163 None:intergenic 35.0%
! CAGTTATGTCTCTCATTTTG+AGG - chr1_4:52529169-52529188 Msa0169320:intron 35.0%
GTGAGTATCTCTATTTCATG+TGG - chr1_4:52529256-52529275 Msa0169320:intron 35.0%
TACTTCTCCCATTGTAGATA+AGG - chr1_4:52529339-52529358 Msa0169320:intron 35.0%
TGAATTACAAAGATAGGCAC+TGG + chr1_4:52529366-52529385 None:intergenic 35.0%
! ACTCTTGCATTTTCCTTTCA+TGG - chr1_4:52529450-52529469 Msa0169320:intron 35.0%
! CATGGATTGTGTAGATTAAG+AGG - chr1_4:52529468-52529487 Msa0169320:intron 35.0%
ACTATATACTAGTAGTGGCT+TGG - chr1_4:52529607-52529626 Msa0169320:intron 35.0%
!!! GATTCTTTTTTGTCCCTTGA+AGG - chr1_4:52529683-52529702 Msa0169320:intron 35.0%
!!! TTCTTTTTTGTCCCTTGAAG+GGG - chr1_4:52529685-52529704 Msa0169320:intron 35.0%
! TTAATGGACAGAGTTGGTTT+AGG - chr1_4:52529780-52529799 Msa0169320:intron 35.0%
AAGTCATACATGTCTCTTCA+CGG + chr1_4:52529844-52529863 None:intergenic 35.0%
TTGCTTGATGAGGAGTAAAA+TGG - chr1_4:52530023-52530042 Msa0169320:intron 35.0%
!! ATATCAGATAGTTCTGGTTC+TGG + chr1_4:52530141-52530160 None:intergenic 35.0%
AGCTCTCCACAGAATAAAAA+TGG - chr1_4:52530425-52530444 Msa0169320:intron 35.0%
AATGGTTGAAAGCTTGACTT+TGG - chr1_4:52530448-52530467 Msa0169320:intron 35.0%
ATGGTTGAAAGCTTGACTTT+GGG - chr1_4:52530449-52530468 Msa0169320:intron 35.0%
TGGAGTCTCGACATAATAAT+GGG - chr1_4:52530490-52530509 Msa0169320:CDS 35.0%
TAGATCAGATATATGTGGTG+TGG + chr1_4:52530577-52530596 None:intergenic 35.0%
AAATTGCCAACTTATTCACC+AGG - chr1_4:52530754-52530773 Msa0169320:intron 35.0%
ATTTAGCCTGGTGAATAAGT+TGG + chr1_4:52530763-52530782 None:intergenic 35.0%
CTGAATCATAAAGTTCCATC+TGG + chr1_4:52530789-52530808 None:intergenic 35.0%
CAGATGGAACTTTATGATTC+AGG - chr1_4:52530787-52530806 Msa0169320:intron 35.0%
!! GGCTCTAAAAATCTAGTGAA+GGG + chr1_4:52530939-52530958 None:intergenic 35.0%
!! AGGCTCTAAAAATCTAGTGA+AGG + chr1_4:52530940-52530959 None:intergenic 35.0%
TGAGAAGTTCAGAAGTTTGA+GGG - chr1_4:52530959-52530978 Msa0169320:intron 35.0%
! AAATTTTGTTGAAGGCAGTC+TGG - chr1_4:52531071-52531090 Msa0169320:intron 35.0%
TGAAATGACAACAAGTCCAT+CGG + chr1_4:52531162-52531181 None:intergenic 35.0%
TTCTGTGCTCATATCATCAA+TGG + chr1_4:52531243-52531262 None:intergenic 35.0%
TGATATGAGCACAGAAAAGT+TGG - chr1_4:52531247-52531266 Msa0169320:intron 35.0%
GATATGAGCACAGAAAAGTT+GGG - chr1_4:52531248-52531267 Msa0169320:intron 35.0%
!! TATTGATTCGAAAGCACAAG+TGG + chr1_4:52531325-52531344 None:intergenic 35.0%
ACTGTAAAGTTGCATACAAC+TGG - chr1_4:52531523-52531542 Msa0169320:intron 35.0%
ATACGTGGAGAAATAGTTAG+AGG - chr1_4:52531686-52531705 Msa0169320:intron 35.0%
GGAGAAATAGTTAGAGGAAA+AGG - chr1_4:52531692-52531711 Msa0169320:intron 35.0%
! ATTCGGCCTATAGTTTTCTA+TGG + chr1_4:52531722-52531741 None:intergenic 35.0%
GGCACAATAATACTTTGTCT+TGG + chr1_4:52531791-52531810 None:intergenic 35.0%
AATGGCTCATACTAGAGTAA+CGG + chr1_4:52531910-52531929 None:intergenic 35.0%
TCTAGTATGAGCCATTTATG+AGG - chr1_4:52531914-52531933 Msa0169320:intron 35.0%
! GTAATTTCCTTTAGAAGGTC+AGG + chr1_4:52532035-52532054 None:intergenic 35.0%
CCTCTGTAATTTCCTTTAGA+AGG + chr1_4:52532040-52532059 None:intergenic 35.0%
! CCTTCTAAAGGAAATTACAG+AGG - chr1_4:52532037-52532056 Msa0169320:intron 35.0%
! GAGAATATGCTTTGTTACCT+AGG - chr1_4:52532176-52532195 Msa0169320:intron 35.0%
GACTAAATCAGCAGAGTTAA+CGG + chr1_4:52532277-52532296 None:intergenic 35.0%
TAATTAGGCCTCTCAAGTAA+TGG + chr1_4:52532313-52532332 None:intergenic 35.0%
! ACAACTTACGAGATGCATTT+TGG + chr1_4:52532547-52532566 None:intergenic 35.0%
ATCTCGTAAGTTGTGATTGA+TGG - chr1_4:52532553-52532572 Msa0169320:intron 35.0%
TCTCGTAAGTTGTGATTGAT+GGG - chr1_4:52532554-52532573 Msa0169320:intron 35.0%
AGCAAGTAAGAATTATGGCT+TGG + chr1_4:52532686-52532705 None:intergenic 35.0%
TCAAACTTCATATGGTCATC+GGG + chr1_4:52532746-52532765 None:intergenic 35.0%
GTCAAACTTCATATGGTCAT+CGG + chr1_4:52532747-52532766 None:intergenic 35.0%
ATACTTAGTGTGGATGTATC+TGG + chr1_4:52532853-52532872 None:intergenic 35.0%
AAAGAGAAACAATCCCAACA+AGG + chr1_4:52532902-52532921 None:intergenic 35.0%
GATTGATGCTTAATGGAGAT+GGG - chr1_4:52533157-52533176 Msa0169320:intron 35.0%
CTTAATGGAGATGGGAATTT+GGG - chr1_4:52533165-52533184 Msa0169320:intron 35.0%
ATACTTCTTTATGAACCTCG+TGG - chr1_4:52533238-52533257 Msa0169320:intron 35.0%
GAACCTCGTGGTATTAAATT+CGG - chr1_4:52533250-52533269 Msa0169320:intron 35.0%
AAGAAGCAATCAATACGTTC+AGG - chr1_4:52533421-52533440 Msa0169320:intron 35.0%
! TTTTGGACCTCAGAGATAAT+AGG - chr1_4:52533466-52533485 Msa0169320:intron 35.0%
! GAAGCTTATATTTGTTGCAG+TGG - chr1_4:52533540-52533559 Msa0169320:intron 35.0%
AGACATATCTTACCAAAGCT+TGG + chr1_4:52533595-52533614 None:intergenic 35.0%
CAGCCAAAATTGATATGCAA+TGG + chr1_4:52533642-52533661 None:intergenic 35.0%
!! CATTGCATATCAATTTTGGC+TGG - chr1_4:52533640-52533659 Msa0169320:intron 35.0%
! ACCAGTATTCTCACCTTTTA+TGG - chr1_4:52533739-52533758 Msa0169320:intron 35.0%
TCCATAAAAGGTGAGAATAC+TGG + chr1_4:52533743-52533762 None:intergenic 35.0%
TAGCACTTGTGATCCATAAA+AGG + chr1_4:52533755-52533774 None:intergenic 35.0%
!! AAAAGGTGTTTCTGACTGTA+TGG + chr1_4:52533779-52533798 None:intergenic 35.0%
TATCTGTTAGAACTTGAAGC+TGG + chr1_4:52533926-52533945 None:intergenic 35.0%
!! CTATCAATTAGGTTGGACAA+AGG - chr1_4:52533946-52533965 Msa0169320:intron 35.0%
GTGTATATTTGTGATAGTCG+TGG - chr1_4:52533976-52533995 Msa0169320:intron 35.0%
GTATATTTGTGATAGTCGTG+GGG - chr1_4:52533978-52533997 Msa0169320:intron 35.0%
!! ATTGGTGTCATATATCGTGT+CGG - chr1_4:52534100-52534119 Msa0169320:intron 35.0%
! CTAGTTGGTTTCGCAAAAAT+AGG - chr1_4:52534184-52534203 Msa0169320:CDS 35.0%
TTCGCAAAAATAGGATTTGC+AGG - chr1_4:52534193-52534212 Msa0169320:CDS 35.0%
CATTGAGGGATACTTGTATT+GGG - chr1_4:52534225-52534244 Msa0169320:CDS 35.0%
AGAATCGCAAACTCTGTATT+GGG - chr1_4:52534274-52534293 Msa0169320:intron 35.0%
GGGTAGATAATAGATATGTG+GGG - chr1_4:52534294-52534313 Msa0169320:intron 35.0%
TAGTAAGCAGTTATTGGGTA+AGG - chr1_4:52534318-52534337 Msa0169320:intron 35.0%
AGTAAGCAGTTATTGGGTAA+GGG - chr1_4:52534319-52534338 Msa0169320:intron 35.0%
TAGTAAGCAGTTATTGGGTA+AGG - chr1_4:52534318-52534337 Msa0169320:intron 35.0%
AGTAAGCAGTTATTGGGTAA+GGG - chr1_4:52534319-52534338 Msa0169320:intron 35.0%
TTGCAACATCTCAACTATTG+AGG + chr1_4:52534624-52534643 None:intergenic 35.0%
AGTAGTTTCACTTACATCAC+AGG + chr1_4:52534678-52534697 None:intergenic 35.0%
! CTTGTTATCTTTCAATGCAC+CGG + chr1_4:52535028-52535047 None:intergenic 35.0%
GTGCATTGAAAGATAACAAG+CGG - chr1_4:52535028-52535047 Msa0169320:intron 35.0%
TGCATTGAAAGATAACAAGC+GGG - chr1_4:52535029-52535048 Msa0169320:intron 35.0%
ATTTACCCCTTTCCAAATGT+TGG + chr1_4:52535072-52535091 None:intergenic 35.0%
! GGAAAGGGGTAAATTACTTT+TGG - chr1_4:52535078-52535097 Msa0169320:intron 35.0%
!! GGGGTAAATTACTTTTGGTT+TGG - chr1_4:52535083-52535102 Msa0169320:intron 35.0%
CAAGATGTGTAGCTCATATT+AGG + chr1_4:52535143-52535162 None:intergenic 35.0%
! CAAATGCAAGGTGTTAAAAG+GGG + chr1_4:52535317-52535336 None:intergenic 35.0%
! CCAAATGCAAGGTGTTAAAA+GGG + chr1_4:52535318-52535337 None:intergenic 35.0%
! TCCAAATGCAAGGTGTTAAA+AGG + chr1_4:52535319-52535338 None:intergenic 35.0%
! TTAGGAAATGATGTTGGTAG+AGG + chr1_4:52535368-52535387 None:intergenic 35.0%
TCTACCAACATCATTTCCTA+AGG - chr1_4:52535367-52535386 Msa0169320:CDS 35.0%
TCATCCTTAGGAAATGATGT+TGG + chr1_4:52535374-52535393 None:intergenic 35.0%
CAAAATGCATCTTCATCCTT+AGG + chr1_4:52535386-52535405 None:intergenic 35.0%
TCCCGAAAATTGAACTAACT+AGG - chr1_4:52535613-52535632 Msa0169320:five_prime_UTR 35.0%
TTCTGGCAGGTTTATTTGTT+TGG + chr1_4:52535649-52535668 None:intergenic 35.0%
AACAAATAAACCTGCCAGAA+TGG - chr1_4:52535649-52535668 Msa0169320:five_prime_UTR 35.0%
ACAAATAAACCTGCCAGAAT+GGG - chr1_4:52535650-52535669 Msa0169320:five_prime_UTR 35.0%
ACAAGATAGTGAGTGGTTTG+AGG - chr1_4:52528359-52528378 Msa0169320:three_prime_UTR 40.0%
AGATTGTTGGGTAACGAAGA+GGG + chr1_4:52528454-52528473 None:intergenic 40.0%
CCTGAAAAACGGAGATTGTT+GGG + chr1_4:52528466-52528485 None:intergenic 40.0%
ACCTGAAAAACGGAGATTGT+TGG + chr1_4:52528467-52528486 None:intergenic 40.0%
TGAGAAGGGAACCTGAAAAA+CGG + chr1_4:52528477-52528496 None:intergenic 40.0%
GAAGAAGGGGAAATTGAGAA+GGG + chr1_4:52528491-52528510 None:intergenic 40.0%
TGAAGAAGGGGAAATTGAGA+AGG + chr1_4:52528492-52528511 None:intergenic 40.0%
TTATGCTGCAGGTTTCAAAC+TGG - chr1_4:52528547-52528566 Msa0169320:CDS 40.0%
TTCTTTACTGTTTGTGCGGT+TGG - chr1_4:52528746-52528765 Msa0169320:CDS 40.0%
! TGGAGTTATGTTGGTTGTGT+CGG - chr1_4:52528773-52528792 Msa0169320:CDS 40.0%
! GGAATTTGGGTTAGATTACG+TGG - chr1_4:52528871-52528890 Msa0169320:intron 40.0%
GTCTGTGTAAGTGTTATGTC+CGG - chr1_4:52528960-52528979 Msa0169320:intron 40.0%
CACTGGACCTTATCTACAAT+GGG + chr1_4:52529349-52529368 None:intergenic 40.0%
!! GTTGAGGTTGTTGACTTTAG+AGG - chr1_4:52529567-52529586 Msa0169320:intron 40.0%
TGTTTCATGCTTGCTTGATG+AGG - chr1_4:52530013-52530032 Msa0169320:intron 40.0%
! GTTGGTTTCAGATAGAAGTG+TGG - chr1_4:52530216-52530235 Msa0169320:intron 40.0%
AGAGTCAAGAGGACAGAAAA+AGG + chr1_4:52530301-52530320 None:intergenic 40.0%
! TTTTCTGTCCTCTTGACTCT+TGG - chr1_4:52530301-52530320 Msa0169320:intron 40.0%
CATGATAACATCTTCATGGG+TGG - chr1_4:52530328-52530347 Msa0169320:intron 40.0%
!!! ATGGGTGGTGGTTTTAAACA+TGG - chr1_4:52530343-52530362 Msa0169320:intron 40.0%
CTGGAGTCTCGACATAATAA+TGG - chr1_4:52530489-52530508 Msa0169320:CDS 40.0%
ATAAATCAGCGAGAATGACC+TGG - chr1_4:52530622-52530641 Msa0169320:intron 40.0%
TAAATCAGCGAGAATGACCT+GGG - chr1_4:52530623-52530642 Msa0169320:intron 40.0%
AATCATTCTTCAATCTGCCC+AGG + chr1_4:52530643-52530662 None:intergenic 40.0%
GCTGCATTTGTTCTCAGATA+TGG - chr1_4:52530881-52530900 Msa0169320:intron 40.0%
AAGAAAGATGCTTGCCACAT+TGG - chr1_4:52530908-52530927 Msa0169320:intron 40.0%
CTCAAACTTCTGAACTTCTC+AGG + chr1_4:52530960-52530979 None:intergenic 40.0%
CTGAGAAGTTCAGAAGTTTG+AGG - chr1_4:52530958-52530977 Msa0169320:intron 40.0%
CCAATATGCATTACACAGTC+AGG + chr1_4:52531035-52531054 None:intergenic 40.0%
CCTGACTGTGTAATGCATAT+TGG - chr1_4:52531032-52531051 Msa0169320:intron 40.0%
AAAACACCAGCTCTATATGC+AGG + chr1_4:52531200-52531219 None:intergenic 40.0%
! TATAGAGCTGGTGTTTTGTC+TGG - chr1_4:52531203-52531222 Msa0169320:intron 40.0%
TTTGTCTGGAGATGTTATCC+TGG - chr1_4:52531217-52531236 Msa0169320:intron 40.0%
GATGAAGAAAAACCCACTGT+AGG + chr1_4:52531295-52531314 None:intergenic 40.0%
! TCAGTTGGTTCAAACATACG+TGG - chr1_4:52531671-52531690 Msa0169320:intron 40.0%
GGGAGACCATAGAAAACTAT+AGG - chr1_4:52531713-52531732 Msa0169320:intron 40.0%
! TATCAAAGTGTTCTTCCACC+AGG + chr1_4:52531838-52531857 None:intergenic 40.0%
TTGATTGCCTGACCTTCTAA+AGG - chr1_4:52532025-52532044 Msa0169320:intron 40.0%
TACCAACTTACGTTAGAGCT+AGG + chr1_4:52532117-52532136 None:intergenic 40.0%
! GCAAGTTTTTGCATCATCCT+AGG + chr1_4:52532196-52532215 None:intergenic 40.0%
TAAATCAGCAGAGTTAACGG+TGG + chr1_4:52532274-52532293 None:intergenic 40.0%
GGAAATAATTCCCCAACAGT+TGG - chr1_4:52532497-52532516 Msa0169320:intron 40.0%
GAAGCAAGAAAAGTTCTGCT+TGG + chr1_4:52532580-52532599 None:intergenic 40.0%
! GAATTATGGCTTGGAGTACT+AGG + chr1_4:52532677-52532696 None:intergenic 40.0%
!! TTTTTCGATGTCTAGGGTTG+TGG - chr1_4:52533067-52533086 Msa0169320:intron 40.0%
GGATTGATGCTTAATGGAGA+TGG - chr1_4:52533156-52533175 Msa0169320:intron 40.0%
GCTTAATGGAGATGGGAATT+TGG - chr1_4:52533164-52533183 Msa0169320:intron 40.0%
TGACCGAATTTAATACCACG+AGG + chr1_4:52533256-52533275 None:intergenic 40.0%
! GCTTATATTTGTTGCAGTGG+TGG - chr1_4:52533543-52533562 Msa0169320:intron 40.0%
TGGCAATCTCAATTCCTTCT+GGG + chr1_4:52533575-52533594 None:intergenic 40.0%
TTGGCAATCTCAATTCCTTC+TGG + chr1_4:52533576-52533595 None:intergenic 40.0%
GAATTGAGATTGCCAAGCTT+TGG - chr1_4:52533580-52533599 Msa0169320:intron 40.0%
!!! TGCATATCAATTTTGGCTGG+TGG - chr1_4:52533643-52533662 Msa0169320:intron 40.0%
!!! GCATATCAATTTTGGCTGGT+GGG - chr1_4:52533644-52533663 Msa0169320:intron 40.0%
AAAAGGTGAGAATACTGGTG+TGG + chr1_4:52533738-52533757 None:intergenic 40.0%
! TGACTGGAGGAGTTCATTTT+TGG + chr1_4:52533861-52533880 None:intergenic 40.0%
CGAGATATACTGGATACAGA+TGG - chr1_4:52534003-52534022 Msa0169320:intron 40.0%
TATGACACCAATGCAATGAG+AGG + chr1_4:52534092-52534111 None:intergenic 40.0%
!! TTGGTGTCATATATCGTGTC+GGG - chr1_4:52534101-52534120 Msa0169320:intron 40.0%
GCATTGAGGGATACTTGTAT+TGG - chr1_4:52534224-52534243 Msa0169320:CDS 40.0%
AGGGATACTTGTATTGGGTT+TGG - chr1_4:52534230-52534249 Msa0169320:CDS 40.0%
GGGATACTTGTATTGGGTTT+GGG - chr1_4:52534231-52534250 Msa0169320:CDS 40.0%
GAGAATCGCAAACTCTGTAT+TGG - chr1_4:52534273-52534292 Msa0169320:intron 40.0%
TGGGGATAGTAAGCAGTTAT+TGG - chr1_4:52534312-52534331 Msa0169320:intron 40.0%
GGGGATAGTAAGCAGTTATT+GGG - chr1_4:52534313-52534332 Msa0169320:intron 40.0%
GTAAGCAGTTATTGGGTAAG+GGG - chr1_4:52534320-52534339 Msa0169320:intron 40.0%
!! AAGAGTTCTATTGACTCCTG+TGG - chr1_4:52534348-52534367 Msa0169320:intron 40.0%
!! AGAGTTCTATTGACTCCTGT+GGG - chr1_4:52534349-52534368 Msa0169320:intron 40.0%
TGGGGATAGTAAGCAGTTAT+TGG - chr1_4:52534312-52534331 Msa0169320:intron 40.0%
GGGGATAGTAAGCAGTTATT+GGG - chr1_4:52534313-52534332 Msa0169320:intron 40.0%
GTAAGCAGTTATTGGGTAAG+GGG - chr1_4:52534320-52534339 Msa0169320:intron 40.0%
TGTTTACCAGACACACCTTT+CGG - chr1_4:52534775-52534794 Msa0169320:intron 40.0%
TTGACAAATTGGAACTCGGA+AGG + chr1_4:52534924-52534943 None:intergenic 40.0%
TGAGCCTAATCAGGTAAACA+AGG - chr1_4:52534975-52534994 Msa0169320:intron 40.0%
GAGCCTAATCAGGTAAACAA+GGG - chr1_4:52534976-52534995 Msa0169320:intron 40.0%
! GTTCCCTTGTTTACCTGATT+AGG + chr1_4:52534982-52535001 None:intergenic 40.0%
ATATGAGCTACACATCTTGC+AGG - chr1_4:52535144-52535163 Msa0169320:intron 40.0%
CTGAGAGCTCAAATACTGAT+TGG + chr1_4:52535175-52535194 None:intergenic 40.0%
TCAGTATTTGAGCTCTCAGA+TGG - chr1_4:52535176-52535195 Msa0169320:CDS 40.0%
! CCCTTTTAACACCTTGCATT+TGG - chr1_4:52535315-52535334 Msa0169320:CDS 40.0%
AACACCTTGCATTTGGATGT+AGG - chr1_4:52535322-52535341 Msa0169320:CDS 40.0%
! GAAATGATGTTGGTAGAGGA+TGG + chr1_4:52535364-52535383 None:intergenic 40.0%
CATATGTATCCAGAGGTTTG+TGG + chr1_4:52535565-52535584 None:intergenic 40.0%
!! AGTTCAATTTTCGGGAACAC+AGG + chr1_4:52535609-52535628 None:intergenic 40.0%
TGATCTCCATGGAAGAGTGA+AGG + chr1_4:52528403-52528422 None:intergenic 45.0%
AGAGCTAGCAATGATCTCCA+TGG + chr1_4:52528414-52528433 None:intergenic 45.0%
GAGATTGTTGGGTAACGAAG+AGG + chr1_4:52528455-52528474 None:intergenic 45.0%
!! CCCAACAATCTCCGTTTTTC+AGG - chr1_4:52528463-52528482 Msa0169320:three_prime_UTR 45.0%
CGAAGGAAACTCCAACTTTG+AGG + chr1_4:52528684-52528703 None:intergenic 45.0%
CAGAAGGAGGAAATGGAACA+AGG - chr1_4:52528704-52528723 Msa0169320:CDS 45.0%
GTTGGTTGCTGGAGTTATGT+TGG - chr1_4:52528764-52528783 Msa0169320:CDS 45.0%
! GCACTGACACTTCAAATCGA+AGG - chr1_4:52528893-52528912 Msa0169320:CDS 45.0%
GTGAGTGTCAAGGTGAATGT+TGG + chr1_4:52529214-52529233 None:intergenic 45.0%
TTGACACTCACTCACTCGAT+GGG - chr1_4:52529223-52529242 Msa0169320:intron 45.0%
CAATGGGAGAAGTAGTGCTA+GGG + chr1_4:52529333-52529352 None:intergenic 45.0%
ACAATGGGAGAAGTAGTGCT+AGG + chr1_4:52529334-52529353 None:intergenic 45.0%
GCACTGGACCTTATCTACAA+TGG + chr1_4:52529350-52529369 None:intergenic 45.0%
GGAAGAGAATCTCCTCTTTC+TGG - chr1_4:52529715-52529734 Msa0169320:intron 45.0%
AGAGAATCTCCTCTTTCTGG+AGG - chr1_4:52529718-52529737 Msa0169320:intron 45.0%
GTCTCTTCACGGTTGTTCAT+GGG + chr1_4:52529833-52529852 None:intergenic 45.0%
TGTCTCTTCACGGTTGTTCA+TGG + chr1_4:52529834-52529853 None:intergenic 45.0%
! TGATTGCCTTCTAGGGATTG+AGG - chr1_4:52529958-52529977 Msa0169320:CDS 45.0%
CATGCATACCAAGAGTCAAG+AGG + chr1_4:52530312-52530331 None:intergenic 45.0%
GATAACATCTTCATGGGTGG+TGG - chr1_4:52530331-52530350 Msa0169320:intron 45.0%
!! GCTTGACTTTGGGTTGTCAT+CGG - chr1_4:52530459-52530478 Msa0169320:intron 45.0%
ACCAGGCTAAATTGTCCAGA+TGG - chr1_4:52530771-52530790 Msa0169320:intron 45.0%
TCCATCTGGACAATTTAGCC+TGG + chr1_4:52530775-52530794 None:intergenic 45.0%
AGTGAAGGGATCATCCAATG+TGG + chr1_4:52530925-52530944 None:intergenic 45.0%
! TGAAGGCAGTCTGGAACTAA+AGG - chr1_4:52531080-52531099 Msa0169320:intron 45.0%
ACTGGAGTGGGGATATCAAT+AGG - chr1_4:52531110-52531129 Msa0169320:intron 45.0%
ATGGCATGTCTGCTTTGGTA+GGG + chr1_4:52531139-52531158 None:intergenic 45.0%
ATGACAACAAGTCCATCGGA+TGG + chr1_4:52531158-52531177 None:intergenic 45.0%
! GTTGTCATTTCAGCTTCTCC+AGG - chr1_4:52531170-52531189 Msa0169320:intron 45.0%
TGCTCATATCATCAATGGCC+AGG + chr1_4:52531238-52531257 None:intergenic 45.0%
GGAAATTACAGAGGACCTGA+TGG - chr1_4:52532046-52532065 Msa0169320:intron 45.0%
AATGCAACAGAGCTTCCATC+AGG + chr1_4:52532064-52532083 None:intergenic 45.0%
! GTTGCATTGACCATACGTAG+TGG - chr1_4:52532076-52532095 Msa0169320:intron 45.0%
TACGTCAGAACCACTACGTA+TGG + chr1_4:52532089-52532108 None:intergenic 45.0%
!! CACCTAGCTCTAACGTAAGT+TGG - chr1_4:52532112-52532131 Msa0169320:intron 45.0%
TTGCACAGTCTTGACTTCAC+TGG + chr1_4:52532464-52532483 None:intergenic 45.0%
GAAACAATCCCAACAAGGCA+GGG + chr1_4:52532897-52532916 None:intergenic 45.0%
AGAAACAATCCCAACAAGGC+AGG + chr1_4:52532898-52532917 None:intergenic 45.0%
CCTGCAAGGATGACAGATTA+CGG + chr1_4:52533393-52533412 None:intergenic 45.0%
! CTTCTTTGATAGCACCTGCA+AGG + chr1_4:52533407-52533426 None:intergenic 45.0%
CAGAGGTTCAGAAGTTGCTA+GGG + chr1_4:52534037-52534056 None:intergenic 45.0%
AAAATTACCAGCACAGCCAG+AGG + chr1_4:52534054-52534073 None:intergenic 45.0%
GCTTTCTCCTCTCATTGCAT+TGG - chr1_4:52534082-52534101 Msa0169320:intron 45.0%
!! GAGTTCTATTGACTCCTGTG+GGG - chr1_4:52534350-52534369 Msa0169320:intron 45.0%
TAACTGCTTACTATCCCCAC+AGG + chr1_4:52534311-52534330 None:intergenic 45.0%
AGTGCCAGCGAAATATTAGC+CGG - chr1_4:52535006-52535025 Msa0169320:intron 45.0%
AACAAGCGGGCCATATTGTA+CGG - chr1_4:52535042-52535061 Msa0169320:intron 45.0%
!! TGTTGGCTCTCCGTACAATA+TGG + chr1_4:52535055-52535074 None:intergenic 45.0%
TTGTACGGAGAGCCAACATT+TGG - chr1_4:52535057-52535076 Msa0169320:intron 45.0%
GGAGAGCCAACATTTGGAAA+GGG - chr1_4:52535063-52535082 Msa0169320:intron 45.0%
GAGAGCCAACATTTGGAAAG+GGG - chr1_4:52535064-52535083 Msa0169320:intron 45.0%
TTGTCAATATCTGTGTGCGC+AGG + chr1_4:52535239-52535258 None:intergenic 45.0%
TGCGCACACAGATATTGACA+AGG - chr1_4:52535238-52535257 Msa0169320:CDS 45.0%
CCAACCTACATCCAAATGCA+AGG + chr1_4:52535329-52535348 None:intergenic 45.0%
CCTTGCATTTGGATGTAGGT+TGG - chr1_4:52535326-52535345 Msa0169320:CDS 45.0%
! TGCATTTTGCAATTGCCTGC+AGG - chr1_4:52535397-52535416 Msa0169320:intron 45.0%
ACAATGTTGCCACAAACCTC+TGG - chr1_4:52535553-52535572 Msa0169320:five_prime_UTR 45.0%
!! TTTAAAAAAAAAAAAAAAAC+TGG + chr1_4:52535279-52535298 None:intergenic 5.0%
! TAGTGAGTGGTTTGAGGCAG+AGG - chr1_4:52528365-52528384 Msa0169320:three_prime_UTR 50.0%
GTTCTGCCTTCACTCTTCCA+TGG - chr1_4:52528394-52528413 Msa0169320:three_prime_UTR 50.0%
GGGTAACGAAGAGGGAAAGA+AGG + chr1_4:52528446-52528465 None:intergenic 50.0%
GTTGGAGTTTCCTTCGCAGA+AGG - chr1_4:52528688-52528707 Msa0169320:intron 50.0%
TCCTTCGCAGAAGGAGGAAA+TGG - chr1_4:52528697-52528716 Msa0169320:intron 50.0%
TCCATTTCCTCCTTCTGCGA+AGG + chr1_4:52528701-52528720 None:intergenic 50.0%
CATCGAGTGAGTGAGTGTCA+AGG + chr1_4:52529224-52529243 None:intergenic 50.0%
CTTGACACTCACTCACTCGA+TGG - chr1_4:52529222-52529241 Msa0169320:intron 50.0%
GAGGAGATTCTCTTCCGTCA+GGG + chr1_4:52529711-52529730 None:intergenic 50.0%
AGAGGAGATTCTCTTCCGTC+AGG + chr1_4:52529712-52529731 None:intergenic 50.0%
TCCACTCCTCAATCCCTAGA+AGG + chr1_4:52529967-52529986 None:intergenic 50.0%
GGTTGTCATCGGTGATTGTC+TGG - chr1_4:52530470-52530489 Msa0169320:intron 50.0%
!! GGAACTAAAGGCGCTCTAAC+TGG - chr1_4:52531092-52531111 Msa0169320:intron 50.0%
!! TAAAGGCGCTCTAACTGGAG+TGG - chr1_4:52531097-52531116 Msa0169320:intron 50.0%
!! AAAGGCGCTCTAACTGGAGT+GGG - chr1_4:52531098-52531117 Msa0169320:intron 50.0%
GATGGCATGTCTGCTTTGGT+AGG + chr1_4:52531140-52531159 None:intergenic 50.0%
ATCGGATGGCATGTCTGCTT+TGG + chr1_4:52531144-52531163 None:intergenic 50.0%
AAAGCAGACATGCCATCCGA+TGG - chr1_4:52531143-52531162 Msa0169320:intron 50.0%
GTCATTTCAGCTTCTCCAGG+AGG - chr1_4:52531173-52531192 Msa0169320:intron 50.0%
! CGAAAGCACAAGTGGCATGT+AGG + chr1_4:52531317-52531336 None:intergenic 50.0%
AGGTAGAGTCTCGTCTCAGT+TGG - chr1_4:52531656-52531675 Msa0169320:intron 50.0%
TCCATGTAGTCAATACCGCC+TGG - chr1_4:52531817-52531836 Msa0169320:intron 50.0%
!! ACCAGGCGGTATTGACTACA+TGG + chr1_4:52531821-52531840 None:intergenic 50.0%
ATGTAGTCAATACCGCCTGG+TGG - chr1_4:52531820-52531839 Msa0169320:intron 50.0%
! CAAAGTGTTCTTCCACCAGG+CGG + chr1_4:52531835-52531854 None:intergenic 50.0%
GGGGAATTATTTCCTGCAGC+AGG + chr1_4:52532491-52532510 None:intergenic 50.0%
AGCGCGCTCAATACTTAGTG+TGG + chr1_4:52532863-52532882 None:intergenic 50.0%
ACATGACTTCCCTGCCTTGT+TGG - chr1_4:52532885-52532904 Msa0169320:intron 50.0%
! CATGACTTCCCTGCCTTGTT+GGG - chr1_4:52532886-52532905 Msa0169320:intron 50.0%
AGGAACCTGCTTACTGCAGA+CGG - chr1_4:52532928-52532947 Msa0169320:intron 50.0%
CTTACTGCAGACGGGCATTT+GGG - chr1_4:52532937-52532956 Msa0169320:intron 50.0%
! TTCGATGTCTAGGGTTGTGG+TGG - chr1_4:52533070-52533089 Msa0169320:intron 50.0%
CCGTAATCTGTCATCCTTGC+AGG - chr1_4:52533390-52533409 Msa0169320:intron 50.0%
! AGTGGTGGTCTTTTCCCAGA+AGG - chr1_4:52533558-52533577 Msa0169320:intron 50.0%
TCGTGGGGTTCGAGATATAC+TGG - chr1_4:52533993-52534012 Msa0169320:intron 50.0%
CCAGAGGTTCAGAAGTTGCT+AGG + chr1_4:52534038-52534057 None:intergenic 50.0%
CCTAGCAACTTCTGAACCTC+TGG - chr1_4:52534035-52534054 Msa0169320:intron 50.0%
TGCAGGACATGCATGCATTG+AGG - chr1_4:52534210-52534229 Msa0169320:CDS 50.0%
GCAGGACATGCATGCATTGA+GGG - chr1_4:52534211-52534230 Msa0169320:CDS 50.0%
TTGGGTTTGGGCAGTTCGTA+CGG - chr1_4:52534243-52534262 Msa0169320:intron 50.0%
GTTATCTACGGTACCGCTGT+GGG + chr1_4:52534436-52534455 None:intergenic 50.0%
TGTTATCTACGGTACCGCTG+TGG + chr1_4:52534437-52534456 None:intergenic 50.0%
TGCAGTCCAGCAAAAACTCG+AGG - chr1_4:52534747-52534766 Msa0169320:intron 50.0%
GCAGTCCAGCAAAAACTCGA+GGG - chr1_4:52534748-52534767 Msa0169320:intron 50.0%
! AACCACCCTCGAGTTTTTGC+TGG + chr1_4:52534756-52534775 None:intergenic 50.0%
GATTCATGGACCTGACCGAA+AGG + chr1_4:52534793-52534812 None:intergenic 50.0%
!! TGCACCGGCTAATATTTCGC+TGG + chr1_4:52535013-52535032 None:intergenic 50.0%
CGGAGAGCCAACATTTGGAA+AGG - chr1_4:52535062-52535081 Msa0169320:intron 50.0%
TTTGAGCTCTCAGATGGCTC+AGG - chr1_4:52535182-52535201 Msa0169320:CDS 50.0%
! GATGTTGGTAGAGGATGGTC+AGG + chr1_4:52535359-52535378 None:intergenic 50.0%
! TGAGTGGTTTGAGGCAGAGG+TGG - chr1_4:52528368-52528387 Msa0169320:three_prime_UTR 55.0%
! TGGTTTGAGGCAGAGGTGGT+AGG - chr1_4:52528372-52528391 Msa0169320:three_prime_UTR 55.0%
GGAGTTTCCTTCGCAGAAGG+AGG - chr1_4:52528691-52528710 Msa0169320:intron 55.0%
! CTGTTTGTGCGGTTGGTTGC+TGG - chr1_4:52528753-52528772 Msa0169320:CDS 55.0%
ACACTCACTCACTCGATGGG+TGG - chr1_4:52529226-52529245 Msa0169320:intron 55.0%
! ATCTCCTCTTTCTGGAGGCG+TGG - chr1_4:52529723-52529742 Msa0169320:intron 55.0%
TTCTCCACGCCTCCAGAAAG+AGG + chr1_4:52529730-52529749 None:intergenic 55.0%
! GCCTTCTAGGGATTGAGGAG+TGG - chr1_4:52529963-52529982 Msa0169320:CDS 55.0%
! AAGGCGCTCTAACTGGAGTG+GGG - chr1_4:52531099-52531118 Msa0169320:intron 55.0%
GCTCTATATGCAGGACCTCC+TGG + chr1_4:52531191-52531210 None:intergenic 55.0%
GGAGGTCCTGCATATAGAGC+TGG - chr1_4:52531191-52531210 Msa0169320:intron 55.0%
ATGCAGCTGAACGCCTACAG+TGG - chr1_4:52531279-52531298 Msa0169320:intron 55.0%
TGCAGCTGAACGCCTACAGT+GGG - chr1_4:52531280-52531299 Msa0169320:intron 55.0%
CTGTGCAAGTTACCTGCTGC+AGG - chr1_4:52532476-52532495 Msa0169320:intron 55.0%
GGAACCTGCTTACTGCAGAC+GGG - chr1_4:52532929-52532948 Msa0169320:intron 55.0%
AATGCCCGTCTGCAGTAAGC+AGG + chr1_4:52532936-52532955 None:intergenic 55.0%
GCTTACTGCAGACGGGCATT+TGG - chr1_4:52532936-52532955 Msa0169320:intron 55.0%
TTCTGAACCTCTGGCTGTGC+TGG - chr1_4:52534044-52534063 Msa0169320:intron 55.0%
TGGGTTTGGGCAGTTCGTAC+GGG - chr1_4:52534244-52534263 Msa0169320:intron 55.0%
CCTTTCCTGTGATCCCACAG+CGG - chr1_4:52534420-52534439 Msa0169320:intron 55.0%
GTCCAGCAAAAACTCGAGGG+TGG - chr1_4:52534751-52534770 Msa0169320:intron 55.0%
ACCAGACACACCTTTCGGTC+AGG - chr1_4:52534780-52534799 Msa0169320:intron 55.0%
! ACCTGACCGAAAGGTGTGTC+TGG + chr1_4:52534784-52534803 None:intergenic 55.0%
ACGAAGAAGCAGGATCCTGC+AGG + chr1_4:52535415-52535434 None:intergenic 55.0%
TTCCGTCAGGGCCCCTTCAA+GGG + chr1_4:52529699-52529718 None:intergenic 60.0%
CCGCTGTGGGATCACAGGAA+AGG + chr1_4:52534423-52534442 None:intergenic 60.0%
GTCCCTTGAAGGGGCCCTGA+CGG - chr1_4:52529694-52529713 Msa0169320:intron 65.0%
CTTCCGTCAGGGCCCCTTCA+AGG + chr1_4:52529700-52529719 None:intergenic 65.0%
CGGTACCGCTGTGGGATCAC+AGG + chr1_4:52534428-52534447 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 52528288 52535673 52528288 ID=Msa0169320;Name=Msa0169320
chr1_4 mRNA 52528288 52535673 52528288 ID=Msa0169320-mRNA-1;Parent=Msa0169320;Name=Msa0169320-mRNA-1;_AED=0.11;_eAED=0.11;_QI=125|0.75|0.84|1|0.83|0.76|13|198|476
chr1_4 exon 52528288 52528617 52528288 ID=Msa0169320-mRNA-1:exon:15614;Parent=Msa0169320-mRNA-1
chr1_4 exon 52528702 52528795 52528702 ID=Msa0169320-mRNA-1:exon:15613;Parent=Msa0169320-mRNA-1
chr1_4 exon 52528876 52528973 52528876 ID=Msa0169320-mRNA-1:exon:15612;Parent=Msa0169320-mRNA-1
chr1_4 exon 52529896 52530004 52529896 ID=Msa0169320-mRNA-1:exon:15611;Parent=Msa0169320-mRNA-1
chr1_4 exon 52530474 52530549 52530474 ID=Msa0169320-mRNA-1:exon:15610;Parent=Msa0169320-mRNA-1
chr1_4 exon 52531404 52531522 52531404 ID=Msa0169320-mRNA-1:exon:15609;Parent=Msa0169320-mRNA-1
chr1_4 exon 52531836 52531904 52531836 ID=Msa0169320-mRNA-1:exon:15608;Parent=Msa0169320-mRNA-1
chr1_4 exon 52532664 52532872 52532664 ID=Msa0169320-mRNA-1:exon:15607;Parent=Msa0169320-mRNA-1
chr1_4 exon 52532981 52533063 52532981 ID=Msa0169320-mRNA-1:exon:15606;Parent=Msa0169320-mRNA-1
chr1_4 exon 52534107 52534256 52534107 ID=Msa0169320-mRNA-1:exon:15605;Parent=Msa0169320-mRNA-1
chr1_4 exon 52535167 52535272 52535167 ID=Msa0169320-mRNA-1:exon:15604;Parent=Msa0169320-mRNA-1
chr1_4 exon 52535290 52535403 52535290 ID=Msa0169320-mRNA-1:exon:15603;Parent=Msa0169320-mRNA-1
chr1_4 exon 52535477 52535673 52535477 ID=Msa0169320-mRNA-1:exon:15602;Parent=Msa0169320-mRNA-1
chr1_4 five_prime_UTR 52535549 52535673 52535549 ID=Msa0169320-mRNA-1:five_prime_utr;Parent=Msa0169320-mRNA-1
chr1_4 CDS 52535477 52535548 52535477 ID=Msa0169320-mRNA-1:cds;Parent=Msa0169320-mRNA-1
chr1_4 CDS 52535290 52535403 52535290 ID=Msa0169320-mRNA-1:cds;Parent=Msa0169320-mRNA-1
chr1_4 CDS 52535167 52535272 52535167 ID=Msa0169320-mRNA-1:cds;Parent=Msa0169320-mRNA-1
chr1_4 CDS 52534107 52534256 52534107 ID=Msa0169320-mRNA-1:cds;Parent=Msa0169320-mRNA-1
chr1_4 CDS 52532981 52533063 52532981 ID=Msa0169320-mRNA-1:cds;Parent=Msa0169320-mRNA-1
chr1_4 CDS 52532664 52532872 52532664 ID=Msa0169320-mRNA-1:cds;Parent=Msa0169320-mRNA-1
chr1_4 CDS 52531836 52531904 52531836 ID=Msa0169320-mRNA-1:cds;Parent=Msa0169320-mRNA-1
chr1_4 CDS 52531404 52531522 52531404 ID=Msa0169320-mRNA-1:cds;Parent=Msa0169320-mRNA-1
chr1_4 CDS 52530474 52530549 52530474 ID=Msa0169320-mRNA-1:cds;Parent=Msa0169320-mRNA-1
chr1_4 CDS 52529896 52530004 52529896 ID=Msa0169320-mRNA-1:cds;Parent=Msa0169320-mRNA-1
chr1_4 CDS 52528876 52528973 52528876 ID=Msa0169320-mRNA-1:cds;Parent=Msa0169320-mRNA-1
chr1_4 CDS 52528702 52528795 52528702 ID=Msa0169320-mRNA-1:cds;Parent=Msa0169320-mRNA-1
chr1_4 CDS 52528486 52528617 52528486 ID=Msa0169320-mRNA-1:cds;Parent=Msa0169320-mRNA-1
chr1_4 three_prime_UTR 52528288 52528485 52528288 ID=Msa0169320-mRNA-1:three_prime_utr;Parent=Msa0169320-mRNA-1
Gene Sequence

>Msa0169320

ATGGAGATCATTGCTAGCTCTGTAATCAATCCTTCTTTCCCTCTTCGTTACCCAACAATCTCCGTTTTTCAGGTTTCAAACTGGAACTGTTTTTCCGTAGTAGAATCAAGGTTTTCATTTTCACTCACACATAAGAGGAAGAAAGTTACTAAATTTTCAATTGGGGTGGTGCCAAAAGTAAACAACTTGGAGTTTCCTTCGCAGAAGGAGGAAATGGAACAAGGATTCTTCTGTGAAGCATGCTTCTTTACTGTTTGTGCGGTTGGTTGCTGGAGTTATGTTGGTTGTGTCGGGGCCCTGACGGAAGAGAATCTCCTCTTTCTGGAGGCGTGGAGAACAATTGACCGAGCATATATCGACAAGAATTTTAATGGACAGAGTTGGTTTAGGTATAGAGAAAATGCATTGCGCAACGAACCCATGAACAACCGTGAAGAGACATATATGGCGATAAGAAAGATGCTTGCCACATTGGATGATCCCTTCACTAGATTTTTAGAGCCTGAGAAGTTCAGAAGTTTGAGGTCTGGAACTAAAGGCGCTCTAACTGGAGTGGGGATATCAATAGGCTACCCTACCAAAGCAGACATGCCATCCGATGGACTTGTTGTCATTTCAGCTTCTCCAGGAGGTCCTGCATATAGAGCTGGTGTTTTGTCTGGAGATGTTATCCTGGCCATTGATGATATGAGCACAGAAAAGTTGGGTCTGTATGATGCAGCTGAACGCCTACAAGGACCTGATGGAAGCTCTGTTGCATTGACCATACGTAGTGGTTCTGACGTAAAGCACCTAGCTCTAACGCGAGAGAAAGTTACAGTCAATCCAGTGAAGTCAAGACTGTGCAAGTTACCTGCTGCAGGAAATAATTCCCCAACAGTTGGTTATATAAAATTAACATCGTTCAACCAAAATGCATCTCGTGCTATCAAAGAAGCAATCAATACGTTCAGGAGTAATAATGTAAATGCATTTGTTTTGGACCTCAGAGATAATAGGTTGGACAAAGGTGTGATTGTGTATATTTGTGATAGTCGTGGGGTTCGAGATATACTGGATACAGATGGAAGTAGTGCCCTAGCAACTTCTGAACCTCTGGCTGTGCTGGTAAACAAGGGAACTGCAAGTGCCAGCGAAATATTAGCCGGTGCATTGAAAGATAACAAGCGGGCCATATTGTACGGAGAGCCAACATTTGGAAAGGGGAAGATCCAATCAGTATTTGAGCTCTCAGATGGCTCAGGACTAGTTGTTACAGTTGCTCGCTACGAGACACCTGCGCACACAGATATTGACAAGGTTGGTGTCATTCCTGACCATCCTCTACCAACATCATTTCCTAAGGATGAAGATGCATTTTGCAATTGCCTGCAGGATCCTGCTTCTTCGTGTAATAATAATAATAACAGGGTCCAGTTATTTTCAAAATGA

Protein sequence

>Msa0169320

MEIIASSVINPSFPLRYPTISVFQVSNWNCFSVVESRFSFSLTHKRKKVTKFSIGVVPKVNNLEFPSQKEEMEQGFFCEACFFTVCAVGCWSYVGCVGALTEENLLFLEAWRTIDRAYIDKNFNGQSWFRYRENALRNEPMNNREETYMAIRKMLATLDDPFTRFLEPEKFRSLRSGTKGALTGVGISIGYPTKADMPSDGLVVISASPGGPAYRAGVLSGDVILAIDDMSTEKLGLYDAAERLQGPDGSSVALTIRSGSDVKHLALTREKVTVNPVKSRLCKLPAAGNNSPTVGYIKLTSFNQNASRAIKEAINTFRSNNVNAFVLDLRDNRLDKGVIVYICDSRGVRDILDTDGSSALATSEPLAVLVNKGTASASEILAGALKDNKRAILYGEPTFGKGKIQSVFELSDGSGLVVTVARYETPAHTDIDKVGVIPDHPLPTSFPKDEDAFCNCLQDPASSCNNNNNRVQLFSK*