AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0549940


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0549940 MtrunA17_Chr4g0034751 95.985 274 11 0 1 274 1 274 0.0 551
Msa0549940 MtrunA17_Chr7g0270061 47.929 169 88 0 102 270 111 279 3.34e-51 169
Msa0549940 MtrunA17_Chr1g0194601 46.746 169 90 0 102 270 114 282 3.79e-49 164
Msa0549940 MtrunA17_Chr5g0409311 39.894 188 113 0 86 273 75 262 2.58e-47 159
Msa0549940 MtrunA17_Chr7g0251451 43.103 174 99 0 98 271 78 251 9.89e-46 155
Msa0549940 MtrunA17_Chr4g0038261 40.000 175 105 0 97 271 43 217 9.56e-44 148
Msa0549940 MtrunA17_Chr4g0056771 33.333 183 118 1 93 271 85 267 1.74e-32 120
Msa0549940 MtrunA17_Chr4g0055551 33.333 183 114 1 99 273 104 286 3.10e-24 99.0
Msa0549940 MtrunA17_Chr4g0015831 41.584 101 59 0 98 198 21 121 8.44e-24 93.2
Msa0549940 MtrunA17_CPg0492721 41.584 101 59 0 98 198 21 121 8.44e-24 93.2
Msa0549940 MtrunA17_Chr7g0272191 33.908 174 104 3 108 270 119 292 2.65e-23 97.1
Msa0549940 MtrunA17_Chr1g0184041 42.683 82 47 0 113 194 100 181 9.35e-17 76.3
Msa0549940 MtrunA17_Chr1g0207341 26.630 184 125 2 99 272 155 338 2.97e-16 77.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0549940 AT1G11750.1 68.116 276 81 3 1 274 1 271 7.98e-137 387
Msa0549940 AT1G11750.2 65.398 289 85 3 1 274 1 289 1.06e-134 382
Msa0549940 AT1G02560.1 46.154 169 91 0 102 270 117 285 3.25e-48 162
Msa0549940 AT1G66670.1 43.103 174 99 0 98 271 84 257 2.31e-45 155
Msa0549940 AT5G45390.1 37.853 177 110 0 95 271 75 251 5.07e-43 149
Msa0549940 AT5G23140.1 40.000 175 105 0 97 271 46 220 1.56e-42 145
Msa0549940 AT1G12410.1 35.632 174 112 0 98 271 88 261 1.76e-34 126
Msa0549940 ATCG00670.1 32.948 173 115 1 98 269 21 193 1.38e-32 119
Msa0549940 AT4G17040.1 32.787 183 115 1 99 273 105 287 1.37e-31 119
Msa0549940 AT1G09130.2 35.519 183 107 3 99 270 121 303 1.77e-29 114
Msa0549940 AT1G09130.1 35.519 183 107 3 99 270 121 303 1.77e-29 114
Msa0549940 AT1G09130.3 35.519 183 107 3 99 270 121 303 4.56e-29 114
Msa0549940 AT1G49970.1 27.027 185 125 2 99 273 171 355 3.54e-17 80.9

Find 88 sgRNAs with CRISPR-Local

Find 343 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATTTCAGGCTTTGGAGTT+TGG 0.250950 4_1:-45262150 Msa0549940:intron
ATTGACAATGTGAAGTAGTT+TGG 0.264333 4_1:+45261882 None:intergenic
AATCAACCACAATGTGGATA+TGG 0.278581 4_1:-45264924 Msa0549940:CDS
AGAATTTGAGATTAGATAGA+TGG 0.298287 4_1:-45266946 Msa0549940:five_prime_UTR
TTGGAGTTTGGTCTTATTGA+TGG 0.304151 4_1:-45262138 Msa0549940:CDS
TTGACAATGTGAAGTAGTTT+GGG 0.318141 4_1:+45261883 None:intergenic
GAAGTAGTTTGGGGTATAAC+TGG 0.326493 4_1:+45261893 None:intergenic
AGTTAATGTCAATTTGATAA+TGG 0.341856 4_1:-45261821 Msa0549940:three_prime_UTR
GTCATGATAGCTGGTGTTAT+TGG 0.353594 4_1:+45265528 None:intergenic
ATGGTGAAGGTGGGAGTTGC+AGG 0.355066 4_1:+45266829 None:intergenic
TGATCCAGATGCAGATATAA+TGG 0.359251 4_1:-45265382 Msa0549940:intron
GATTAGATAGATGGAATAAA+AGG 0.364115 4_1:-45266937 Msa0549940:five_prime_UTR
CCCTGGTGGAAGCACTTATT+CGG 0.393075 4_1:-45265252 Msa0549940:CDS
AGATTCAATACTCTGTTTCC+AGG 0.396606 4_1:+45262112 None:intergenic
CAAGGAACACTTCTCCTTGC+CGG 0.401602 4_1:-45264996 Msa0549940:CDS
TTCATCATAATGCGAGCATT+TGG 0.412758 4_1:+45264945 None:intergenic
AAACATACTGTACCAACCTT+TGG 0.421332 4_1:+45265035 None:intergenic
CAATTTATGATTGCATGTCT+TGG 0.426577 4_1:-45265223 Msa0549940:CDS
ATTAACTGCGCCACTTTAGC+AGG 0.426652 4_1:+45261837 None:intergenic
CAAACCATTATATCTGCATC+TGG 0.434951 4_1:+45265378 None:intergenic
ATCAACCACAATGTGGATAT+GGG 0.440932 4_1:-45264923 Msa0549940:CDS
CAAGAAAGAGCCTGCTAAAG+TGG 0.443383 4_1:-45261847 Msa0549940:three_prime_UTR
TGAGCCACTTGTGAGTTAAC+TGG 0.446998 4_1:+45265441 None:intergenic
TATTGGCGGGTTCCCCGTCT+TGG 0.448456 4_1:+45265545 None:intergenic
TCTCCTTGCCGGTGGGGAGA+AGG 0.458468 4_1:-45264985 Msa0549940:CDS
TCTTCCTTGCAAAGCCCCTA+TGG 0.461392 4_1:-45266662 Msa0549940:CDS
TATGGTAGTTCTTCTCAAAT+CGG 0.473212 4_1:-45266644 Msa0549940:intron
AGGAATCGTATAATATTCAT+AGG 0.474892 4_1:-45265468 Msa0549940:CDS
TATATCGCAGCTTGTGACTC+TGG 0.483356 4_1:-45265412 Msa0549940:CDS
AATTTATGATTGCATGTCTT+GGG 0.491253 4_1:-45265222 Msa0549940:intron
AAGATGTTCAGTGCTTTCAC+TGG 0.493292 4_1:-45263278 Msa0549940:CDS
ATGATAGCTGGTGTTATTGG+CGG 0.494864 4_1:+45265531 None:intergenic
TGTGTAATAACGCCTTGTTT+TGG 0.496140 4_1:-45266907 Msa0549940:five_prime_UTR
CTCCTTGCCGGTGGGGAGAA+GGG 0.497877 4_1:-45264984 Msa0549940:CDS
CGGCAAGGAGAAGTGTTCCT+TGG 0.498121 4_1:+45264997 None:intergenic
TGATAGCTGGTGTTATTGGC+GGG 0.501907 4_1:+45265532 None:intergenic
AAGGTTGGTACAGTATGTTT+CGG 0.503063 4_1:-45265032 Msa0549940:CDS
ACACCAGCTATCATGACTCC+TGG 0.503870 4_1:-45265522 Msa0549940:CDS
TGGTCTTATTGATGGTGTCC+TGG 0.508407 4_1:-45262130 Msa0549940:CDS
ACTGGATTCTTAAATCAAAA+CGG 0.511042 4_1:+45261911 None:intergenic
ACCGAATAAGTGCTTCCACC+AGG 0.511860 4_1:+45265251 None:intergenic
GAGAGATCAAGAGCTCCTCC+AGG 0.521114 4_1:+45265504 None:intergenic
CCTCCAGGAGTCATGATAGC+TGG 0.521187 4_1:+45265519 None:intergenic
TTCCCTTCTCCCCACCGGCA+AGG 0.541555 4_1:+45264982 None:intergenic
TGAGAAAACGTAAGTTGAGA+AGG 0.541998 4_1:+45266787 None:intergenic
CGGTGTAATTGAAGCCAAGA+CGG 0.544571 4_1:-45265559 Msa0549940:CDS
GGTGTAATTGAAGCCAAGAC+GGG 0.551793 4_1:-45265558 Msa0549940:CDS
CTTAAATCAAAACGGAAACA+AGG 0.557821 4_1:+45261946 None:intergenic
GTAAGTTGACTTTCATAGAA+CGG 0.558902 4_1:-45262010 Msa0549940:three_prime_UTR
TTTCAGATAAAGCCAAAGGT+TGG 0.559455 4_1:-45265047 Msa0549940:intron
GCGCATTCCCTTCTCCCCAC+CGG 0.570395 4_1:+45264977 None:intergenic
CTTACCCCATATCCACATTG+TGG 0.574250 4_1:+45264918 None:intergenic
GATTTGAGAAGAACTACCAT+AGG 0.577205 4_1:+45266646 None:intergenic
GATTCTTCTGTGAGAAGCGA+TGG 0.577304 4_1:+45266810 None:intergenic
ATTTGAGAAGAACTACCATA+GGG 0.578078 4_1:+45266647 None:intergenic
GAACACTTCTCCTTGCCGGT+GGG 0.588591 4_1:-45264992 Msa0549940:CDS
CACTGGACAGACATTAGAGA+AGG 0.591851 4_1:-45263261 Msa0549940:CDS
GGAAGAAAGACTAACATGGC+GGG 0.596977 4_1:+45264209 None:intergenic
AACACTTCTCCTTGCCGGTG+GGG 0.597362 4_1:-45264991 Msa0549940:CDS
GGCTTATCAAGTAAAACCCA+TGG 0.598446 4_1:-45266232 Msa0549940:CDS
CAGATGTATATAAATTGCCC+TGG 0.599214 4_1:-45265269 Msa0549940:CDS
TCGCGTGAAGCTCCAAAACA+AGG 0.599276 4_1:+45266895 None:intergenic
GGAACACTTCTCCTTGCCGG+TGG 0.600384 4_1:-45264993 Msa0549940:CDS
GTACACATGATGTTGGTACA+AGG 0.602280 4_1:-45266183 Msa0549940:intron
GAGAAAACGTAAGTTGAGAA+GGG 0.606921 4_1:+45266788 None:intergenic
GTGAGAAGCGATGGTGAAGG+TGG 0.617082 4_1:+45266819 None:intergenic
TTAAATCAAAACGGAAACAA+GGG 0.617984 4_1:+45261947 None:intergenic
AAGGAAGAAGATATCGTGCA+AGG 0.618347 4_1:+45266677 None:intergenic
AGGAAGAAGATATCGTGCAA+GGG 0.624121 4_1:+45266678 None:intergenic
TCAACCACAATGTGGATATG+GGG 0.624507 4_1:-45264922 Msa0549940:intron
ATGTATATAAATTGCCCTGG+TGG 0.625092 4_1:-45265266 Msa0549940:CDS
TGACAATGTGAAGTAGTTTG+GGG 0.627479 4_1:+45261884 None:intergenic
TTCGGAGTAGCTGCAAGCCA+AGG 0.633505 4_1:-45265014 Msa0549940:CDS
GAGAAAAGTACACATGATGT+TGG 0.647062 4_1:-45266190 Msa0549940:CDS
GTTTCAAACAAAACAAACAA+TGG 0.650736 4_1:-45266872 Msa0549940:exon
CCGAATAAGTGCTTCCACCA+GGG 0.650767 4_1:+45265252 None:intergenic
ATATTCATTCATGACTCATG+AGG 0.657188 4_1:+45262043 None:intergenic
GGTGCAAGAGTACACAGAGA+GGG 0.660689 4_1:-45263240 Msa0549940:CDS
AGGTGCAAGAGTACACAGAG+AGG 0.664297 4_1:-45263241 Msa0549940:CDS
ACTACCATAGGGGCTTTGCA+AGG 0.666249 4_1:+45266658 None:intergenic
ACAGCCAGTTAACTCACAAG+TGG 0.670821 4_1:-45265445 Msa0549940:CDS
GTGTAATTGAAGCCAAGACG+GGG 0.677616 4_1:-45265557 Msa0549940:CDS
CTGACTGCAGGGTCATGTTG+AGG 0.678728 4_1:-45264265 Msa0549940:intron
TGAGAAGCGATGGTGAAGGT+GGG 0.692078 4_1:+45266820 None:intergenic
ATGATGAATCAACCACAATG+TGG 0.708739 4_1:-45264930 Msa0549940:CDS
CCAGCTATCATGACTCCTGG+AGG 0.717326 4_1:-45265519 Msa0549940:CDS
TCTGTGAGAAGCGATGGTGA+AGG 0.733173 4_1:+45266816 None:intergenic
TTTGAGAAGAACTACCATAG+GGG 0.735308 4_1:+45266648 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAAAAAATATATTAATTT+AGG - chr4_1:45262338-45262357 Msa0549940:intron 0.0%
!! ATAAAAAATATATTAATTTA+GGG - chr4_1:45262339-45262358 Msa0549940:intron 0.0%
!!! TATATATATTTTTTAACAAG+AGG - chr4_1:45261840-45261859 Msa0549940:three_prime_UTR 10.0%
!! TTGATAAATTTATATACTTT+AGG - chr4_1:45262400-45262419 Msa0549940:intron 10.0%
!! TGATAAATTTATATACTTTA+GGG - chr4_1:45262401-45262420 Msa0549940:intron 10.0%
!!! AAATTGAATTATTTTGTAAA+TGG - chr4_1:45263082-45263101 Msa0549940:intron 10.0%
!!! AATTGAATTATTTTGTAAAT+GGG - chr4_1:45263083-45263102 Msa0549940:intron 10.0%
!!! ATCAAAGTTTTTATATATAT+TGG - chr4_1:45265821-45265840 Msa0549940:intron 10.0%
!!! TTTTAAGTATTAATGAATGA+AGG - chr4_1:45263199-45263218 Msa0549940:intron 15.0%
!! TTATGATAATTGATAAAAAG+TGG + chr4_1:45264057-45264076 None:intergenic 15.0%
!! TCATAATAAGTAGTTAAATA+CGG - chr4_1:45264071-45264090 Msa0549940:intron 15.0%
!!! TTTTTACATAAAAAAAGCTA+TGG - chr4_1:45264420-45264439 Msa0549940:intron 15.0%
!!! ATTTGTTTTGTTATTTACTT+TGG - chr4_1:45266091-45266110 Msa0549940:intron 15.0%
!!! TTTTCTATTGAGTATTATTA+TGG - chr4_1:45266183-45266202 Msa0549940:intron 15.0%
!! CAAAGAAAATTGGATAAAAT+TGG + chr4_1:45262203-45262222 None:intergenic 20.0%
!! AAATAGTAGACAAAGAAAAT+TGG + chr4_1:45262213-45262232 None:intergenic 20.0%
!! AAACAAAAACTCATTCATTT+GGG + chr4_1:45262260-45262279 None:intergenic 20.0%
!! AAAACAAAAACTCATTCATT+TGG + chr4_1:45262261-45262280 None:intergenic 20.0%
!!! TTTTAGTATTTGTTAGTGAT+TGG - chr4_1:45262292-45262311 Msa0549940:intron 20.0%
!! GTATAATGTATTTGTTTAGT+AGG - chr4_1:45262701-45262720 Msa0549940:intron 20.0%
!! TAGTCAAAAGTCAAATAATA+GGG + chr4_1:45263481-45263500 None:intergenic 20.0%
!! TTAGTCAAAAGTCAAATAAT+AGG + chr4_1:45263482-45263501 None:intergenic 20.0%
!! AAAAACATTGACAACTATTA+AGG + chr4_1:45263718-45263737 None:intergenic 20.0%
!!! AAGCTTTTGAAATTTTGTTA+TGG - chr4_1:45263924-45263943 Msa0549940:intron 20.0%
!!! GACATAACCTTTTAATTTTT+GGG - chr4_1:45264234-45264253 Msa0549940:CDS 20.0%
!!! GGAATATCTATAAGTTTTAT+TGG - chr4_1:45264269-45264288 Msa0549940:intron 20.0%
!! ATAGATATACTAAATAACGA+AGG - chr4_1:45264383-45264402 Msa0549940:intron 20.0%
!!! ATTTTCAATATATGTGAAAC+TGG - chr4_1:45265337-45265356 Msa0549940:intron 20.0%
!!! TTTTATATATATTGGAGAGT+TGG - chr4_1:45265829-45265848 Msa0549940:intron 20.0%
!! TTTATATATATTGGAGAGTT+GGG - chr4_1:45265830-45265849 Msa0549940:intron 20.0%
!! AATACATATTATTATGTGAG+TGG - chr4_1:45266008-45266027 Msa0549940:intron 20.0%
!! ATATGATAAGAACTAACAAT+AGG + chr4_1:45266067-45266086 None:intergenic 20.0%
!!! AAATTTTTAGCAGTAAAACA+AGG + chr4_1:45266614-45266633 None:intergenic 20.0%
!! AGTTAATGTCAATTTGATAA+TGG - chr4_1:45266994-45267013 Msa0549940:five_prime_UTR 20.0%
!! AGAATTTGAGATTAGATAGA+TGG - chr4_1:45261869-45261888 Msa0549940:three_prime_UTR 25.0%
! GATTAGATAGATGGAATAAA+AGG - chr4_1:45261878-45261897 Msa0549940:three_prime_UTR 25.0%
! GTTTCAAACAAAACAAACAA+TGG - chr4_1:45261943-45261962 Msa0549940:intron 25.0%
! AACAAAAACTCATTCATTTG+GGG + chr4_1:45262259-45262278 None:intergenic 25.0%
! ATTACACATTTATGCAGTTT+AGG - chr4_1:45262431-45262450 Msa0549940:intron 25.0%
! TTACACATTTATGCAGTTTA+GGG - chr4_1:45262432-45262451 Msa0549940:intron 25.0%
!!! AAGTTTTAAGCTAAAACCAT+GGG + chr4_1:45262602-45262621 None:intergenic 25.0%
! ATGAAAAAATGGACAATACT+AGG + chr4_1:45262740-45262759 None:intergenic 25.0%
!!! TAGTATTGTCCATTTTTTCA+TGG - chr4_1:45262739-45262758 Msa0549940:intron 25.0%
! ATACTGGAAAAATAAGTGTA+AGG - chr4_1:45262792-45262811 Msa0549940:intron 25.0%
! TACTGGAAAAATAAGTGTAA+GGG - chr4_1:45262793-45262812 Msa0549940:intron 25.0%
!! GTAAGGGTATATAAGTAATT+AGG - chr4_1:45262809-45262828 Msa0549940:intron 25.0%
! GTCAATTTATGAGATGTAAT+TGG + chr4_1:45263011-45263030 None:intergenic 25.0%
! TCTTGAACTTTGATACTTTA+AGG - chr4_1:45263139-45263158 Msa0549940:intron 25.0%
! AGGAATCGTATAATATTCAT+AGG - chr4_1:45263347-45263366 Msa0549940:intron 25.0%
!!! ACTTTTGACTAATCTTACAA+TGG - chr4_1:45263490-45263509 Msa0549940:intron 25.0%
! AATTTATGATTGCATGTCTT+GGG - chr4_1:45263593-45263612 Msa0549940:intron 25.0%
!! ATGCACTTTAGATTTTATGA+TGG - chr4_1:45263950-45263969 Msa0549940:intron 25.0%
! GGATAATAACAATGACAATA+TGG - chr4_1:45264024-45264043 Msa0549940:intron 25.0%
!! TAATTGATAAAAAGTGGACT+GGG + chr4_1:45264051-45264070 None:intergenic 25.0%
! ATAATTGATAAAAAGTGGAC+TGG + chr4_1:45264052-45264071 None:intergenic 25.0%
!! TATTTTACTCATATGCTAGA+TGG + chr4_1:45264103-45264122 None:intergenic 25.0%
! ATAGAAGTTTGTAAACTGTA+GGG + chr4_1:45264154-45264173 None:intergenic 25.0%
! TATAGAAGTTTGTAAACTGT+AGG + chr4_1:45264155-45264174 None:intergenic 25.0%
! ACAAACTTCTATAAAACTAG+AGG - chr4_1:45264162-45264181 Msa0549940:intron 25.0%
!!! GGACATAACCTTTTAATTTT+TGG - chr4_1:45264233-45264252 Msa0549940:CDS 25.0%
! AACTAGTCCCAAAAATTAAA+AGG + chr4_1:45264244-45264263 None:intergenic 25.0%
!! ATAAAAAAAGCTATGGACTA+TGG - chr4_1:45264427-45264446 Msa0549940:intron 25.0%
! AACTCAAACTATTGAACAAT+CGG + chr4_1:45264886-45264905 None:intergenic 25.0%
! AACTTCTATTAACAAGATTG+GGG + chr4_1:45264915-45264934 None:intergenic 25.0%
! CAACTTCTATTAACAAGATT+GGG + chr4_1:45264916-45264935 None:intergenic 25.0%
! TCAACTTCTATTAACAAGAT+TGG + chr4_1:45264917-45264936 None:intergenic 25.0%
! AACTCAAACTATTGAACAAT+CGG + chr4_1:45264886-45264905 None:intergenic 25.0%
! AACTTCTATTAACAAGATTG+GGG + chr4_1:45264915-45264934 None:intergenic 25.0%
! CAACTTCTATTAACAAGATT+GGG + chr4_1:45264916-45264935 None:intergenic 25.0%
! TCAACTTCTATTAACAAGAT+TGG + chr4_1:45264917-45264936 None:intergenic 25.0%
! TTGTTAGAAAGAGAATATTC+TGG + chr4_1:45265696-45265715 None:intergenic 25.0%
! TTATATATATTGGAGAGTTG+GGG - chr4_1:45265831-45265850 Msa0549940:intron 25.0%
! CATAAGAACTCTTTACAAAA+GGG + chr4_1:45265978-45265997 None:intergenic 25.0%
! ACATAAGAACTCTTTACAAA+AGG + chr4_1:45265979-45265998 None:intergenic 25.0%
! TAAAGAGTTCTTATGTTGTT+TGG - chr4_1:45265983-45266002 Msa0549940:intron 25.0%
!! AAAGAGTTCTTATGTTGTTT+GGG - chr4_1:45265984-45266003 Msa0549940:intron 25.0%
! GAAGTTTAGTACATTAGTAT+AGG - chr4_1:45266118-45266137 Msa0549940:intron 25.0%
! TTATGATCTTAATAGTTGTC+TGG - chr4_1:45266242-45266261 Msa0549940:intron 25.0%
!!! CAAGTTTTAGTTAAAAGAGA+CGG + chr4_1:45266286-45266305 None:intergenic 25.0%
! ATCCTCTCATTTCTAAATAT+AGG - chr4_1:45266312-45266331 Msa0549940:intron 25.0%
! ATCCTATATTTAGAAATGAG+AGG + chr4_1:45266317-45266336 None:intergenic 25.0%
! ATAAGTCTCAAATTTGATTG+TGG - chr4_1:45266478-45266497 Msa0549940:intron 25.0%
! TAAGTCTCAAATTTGATTGT+GGG - chr4_1:45266479-45266498 Msa0549940:intron 25.0%
! AATATCTGGATTTAGAAATG+AGG - chr4_1:45266536-45266555 Msa0549940:intron 25.0%
! ATATCTGGATTTAGAAATGA+GGG - chr4_1:45266537-45266556 Msa0549940:intron 25.0%
! TTAAATCAAAACGGAAACAA+GGG + chr4_1:45266871-45266890 None:intergenic 25.0%
! TTAAATCAAAACGGAAACAA+GGG + chr4_1:45266871-45266890 None:intergenic 25.0%
! ACTGGATTCTTAAATCAAAA+CGG + chr4_1:45266907-45266926 None:intergenic 25.0%
ATTTGAGAAGAACTACCATA+GGG + chr4_1:45262171-45262190 None:intergenic 30.0%
TATGGTAGTTCTTCTCAAAT+CGG - chr4_1:45262171-45262190 Msa0549940:intron 30.0%
TAATTTAGGGACTGAATTGA+TGG - chr4_1:45262352-45262371 Msa0549940:intron 30.0%
ATGCAGTTTAGGGATTAAAT+TGG - chr4_1:45262442-45262461 Msa0549940:intron 30.0%
TAAAGCATGTTATGACATGT+AGG - chr4_1:45262545-45262564 Msa0549940:intron 30.0%
!!! CAAGTTTTAAGCTAAAACCA+TGG + chr4_1:45262603-45262622 None:intergenic 30.0%
TTTCCATAGACTACATAGAT+AGG + chr4_1:45262918-45262937 None:intergenic 30.0%
ACGTAACAATGTGATATGTA+GGG - chr4_1:45263029-45263048 Msa0549940:intron 30.0%
! TTTCAGTTTGCTTGTAGTTA+CGG - chr4_1:45263236-45263255 Msa0549940:CDS 30.0%
CAATTTATGATTGCATGTCT+TGG - chr4_1:45263592-45263611 Msa0549940:intron 30.0%
!!! TTTTTTTGTGTGTGTGTGTA+AGG + chr4_1:45263649-45263668 None:intergenic 30.0%
GGAATTAAAGTAGCTAACAA+AGG + chr4_1:45263697-45263716 None:intergenic 30.0%
!!! GTTTTTACCTTGAAAGCATT+TGG - chr4_1:45263732-45263751 Msa0549940:intron 30.0%
GCTTTATCTGAAAACAAATG+TGG + chr4_1:45263761-45263780 None:intergenic 30.0%
! TTGTTTTCAGATAAAGCCAA+AGG - chr4_1:45263764-45263783 Msa0549940:intron 30.0%
! AGAAAAAGACGATACTGATT+TGG - chr4_1:45263991-45264010 Msa0549940:intron 30.0%
!! AATTTTCAGCATTGAGATTG+AGG - chr4_1:45264190-45264209 Msa0549940:intron 30.0%
ATAGAATGCACTATGTAGTT+TGG - chr4_1:45264350-45264369 Msa0549940:intron 30.0%
!! TATGGACTATGGTGTATTTT+TGG - chr4_1:45264438-45264457 Msa0549940:intron 30.0%
! TTATGTGATGTGAAGTGTTT+CGG - chr4_1:45264487-45264506 Msa0549940:intron 30.0%
!! TTTGTTATTAATCTGACTGC+AGG - chr4_1:45264538-45264557 Msa0549940:intron 30.0%
! TTGTTATTAATCTGACTGCA+GGG - chr4_1:45264539-45264558 Msa0549940:intron 30.0%
TAAAAATCATGCAACTTCAG+AGG + chr4_1:45264630-45264649 None:intergenic 30.0%
!!! AACTTAGTTTTGCTGAAAGT+AGG - chr4_1:45264682-45264701 Msa0549940:intron 30.0%
GAACAATAGATACATGACTT+TGG - chr4_1:45264823-45264842 Msa0549940:intron 30.0%
!! ATAGAAGTTGAATTTTAGCG+CGG - chr4_1:45264926-45264945 Msa0549940:CDS 30.0%
GAACAATAGATACATGACTT+TGG - chr4_1:45264823-45264842 Msa0549940:intron 30.0%
!! ATAGAAGTTGAATTTTAGCG+CGG - chr4_1:45264926-45264945 Msa0549940:CDS 30.0%
!! AGAATGGACTATTGGAAATT+TGG - chr4_1:45265287-45265306 Msa0549940:intron 30.0%
ATAGTTTATCTGACAGTTCT+TGG - chr4_1:45265457-45265476 Msa0549940:CDS 30.0%
TTTCTGTACTCCAAAAAGAA+GGG + chr4_1:45265511-45265530 None:intergenic 30.0%
! TTTTCTGTACTCCAAAAAGA+AGG + chr4_1:45265512-45265531 None:intergenic 30.0%
!!! TCTTTTTGGAGTACAGAAAA+TGG - chr4_1:45265512-45265531 Msa0549940:CDS 30.0%
TATATATATTGGAGAGTTGG+GGG - chr4_1:45265832-45265851 Msa0549940:intron 30.0%
CAGAAAATGATAAACCTGAT+GGG + chr4_1:45265931-45265950 None:intergenic 30.0%
ACAGAAAATGATAAACCTGA+TGG + chr4_1:45265932-45265951 None:intergenic 30.0%
TTACAAAAGGGTTGTAGAAA+TGG + chr4_1:45265966-45265985 None:intergenic 30.0%
AAAACAGACAAATGGACAAA+TGG + chr4_1:45266167-45266186 None:intergenic 30.0%
CTCAATAGAAAACAGACAAA+TGG + chr4_1:45266175-45266194 None:intergenic 30.0%
AAGTCTCAAATTTGATTGTG+GGG - chr4_1:45266480-45266499 Msa0549940:intron 30.0%
AAACATGAGGACTAAATATC+TGG - chr4_1:45266522-45266541 Msa0549940:intron 30.0%
TATCTGGATTTAGAAATGAG+GGG - chr4_1:45266538-45266557 Msa0549940:intron 30.0%
! CTGCTAAAAATTTTCTTACC+CGG - chr4_1:45266621-45266640 Msa0549940:intron 30.0%
ATATTCATTCATGACTCATG+AGG + chr4_1:45266775-45266794 None:intergenic 30.0%
! GTAAGTTGACTTTCATAGAA+CGG - chr4_1:45266805-45266824 Msa0549940:CDS 30.0%
!!! TCTAGTTTTGTCTGCTATTA+TGG - chr4_1:45266832-45266851 Msa0549940:CDS 30.0%
CTTAAATCAAAACGGAAACA+AGG + chr4_1:45266872-45266891 None:intergenic 30.0%
AAGGGACTCTTAAATCAAAA+CGG + chr4_1:45266880-45266899 None:intergenic 30.0%
CTTAAATCAAAACGGAAACA+AGG + chr4_1:45266872-45266891 None:intergenic 30.0%
TTGACAATGTGAAGTAGTTT+GGG + chr4_1:45266935-45266954 None:intergenic 30.0%
ATTGACAATGTGAAGTAGTT+TGG + chr4_1:45266936-45266955 None:intergenic 30.0%
!!! CACATTGTCAATTTTGAAGT+AGG - chr4_1:45266944-45266963 Msa0549940:five_prime_UTR 30.0%
!!! TGTGTAATAACGCCTTGTTT+TGG - chr4_1:45261908-45261927 Msa0549940:three_prime_UTR 35.0%
! GAGAAAACGTAAGTTGAGAA+GGG + chr4_1:45262030-45262049 None:intergenic 35.0%
! TGAGAAAACGTAAGTTGAGA+AGG + chr4_1:45262031-45262050 None:intergenic 35.0%
GTGAAAGCGAAAGTTGAAAT+GGG + chr4_1:45262077-45262096 None:intergenic 35.0%
AGTGAAAGCGAAAGTTGAAA+TGG + chr4_1:45262078-45262097 None:intergenic 35.0%
TTTGAGAAGAACTACCATAG+GGG + chr4_1:45262170-45262189 None:intergenic 35.0%
GATTTGAGAAGAACTACCAT+AGG + chr4_1:45262172-45262191 None:intergenic 35.0%
GGAAAGAAAGTGATAGTTTG+AGG - chr4_1:45262463-45262482 Msa0549940:intron 35.0%
!!! TGTAGGTTTTTGTTTTACGC+AGG - chr4_1:45262562-45262581 Msa0549940:intron 35.0%
! GAGAAAAGTACACATGATGT+TGG - chr4_1:45262625-45262644 Msa0549940:intron 35.0%
AGCACTTGAAAGAGTAACAA+GGG + chr4_1:45262671-45262690 None:intergenic 35.0%
AAGCACTTGAAAGAGTAACA+AGG + chr4_1:45262672-45262691 None:intergenic 35.0%
TCGGTTGAACCATGAAAAAA+TGG + chr4_1:45262751-45262770 None:intergenic 35.0%
GTATACAATCACAGAAAGTC+AGG + chr4_1:45262776-45262795 None:intergenic 35.0%
GACTTTCTGTGATTGTATAC+TGG - chr4_1:45262776-45262795 Msa0549940:intron 35.0%
! GGTCTATAAGCTGAATGTTT+TGG + chr4_1:45262863-45262882 None:intergenic 35.0%
TGACCTATCTATGTAGTCTA+TGG - chr4_1:45262912-45262931 Msa0549940:intron 35.0%
GACGTAACAATGTGATATGT+AGG - chr4_1:45263028-45263047 Msa0549940:intron 35.0%
! CTTAAAAAAGTGCAGAGACT+GGG + chr4_1:45263186-45263205 None:intergenic 35.0%
! ACTTAAAAAAGTGCAGAGAC+TGG + chr4_1:45263187-45263206 None:intergenic 35.0%
!! ATCTCTCATCTGTTTTGTTC+AGG - chr4_1:45263327-45263346 Msa0549940:intron 35.0%
TGATCCAGATGCAGATATAA+TGG - chr4_1:45263433-45263452 Msa0549940:intron 35.0%
CAAACCATTATATCTGCATC+TGG + chr4_1:45263440-45263459 None:intergenic 35.0%
CAGATGTATATAAATTGCCC+TGG - chr4_1:45263546-45263565 Msa0549940:intron 35.0%
ATGTATATAAATTGCCCTGG+TGG - chr4_1:45263549-45263568 Msa0549940:intron 35.0%
!! TTTACCTTGAAAGCATTTGG+TGG - chr4_1:45263735-45263754 Msa0549940:intron 35.0%
TTTCAGATAAAGCCAAAGGT+TGG - chr4_1:45263768-45263787 Msa0549940:intron 35.0%
AAACATACTGTACCAACCTT+TGG + chr4_1:45263783-45263802 None:intergenic 35.0%
!! AAGGTTGGTACAGTATGTTT+CGG - chr4_1:45263783-45263802 Msa0549940:intron 35.0%
TTCATCATAATGCGAGCATT+TGG + chr4_1:45263873-45263892 None:intergenic 35.0%
ATGATGAATCAACCACAATG+TGG - chr4_1:45263885-45263904 Msa0549940:intron 35.0%
AATCAACCACAATGTGGATA+TGG - chr4_1:45263891-45263910 Msa0549940:intron 35.0%
ATCAACCACAATGTGGATAT+GGG - chr4_1:45263892-45263911 Msa0549940:intron 35.0%
!!! ATTTTTGGGACTAGTTGCAA+TGG - chr4_1:45264248-45264267 Msa0549940:CDS 35.0%
TGTTTCGGTCAATACTCAAT+AGG - chr4_1:45264502-45264521 Msa0549940:intron 35.0%
TTCAGCAAAACTAAGTTCAC+AGG + chr4_1:45264679-45264698 None:intergenic 35.0%
AACCCTTGAATGTATAGTGT+TGG - chr4_1:45264752-45264771 Msa0549940:intron 35.0%
ACCCTTGAATGTATAGTGTT+GGG - chr4_1:45264753-45264772 Msa0549940:intron 35.0%
TCCCAACACTATACATTCAA+GGG + chr4_1:45264757-45264776 None:intergenic 35.0%
AGTCATGTATCTATTGTTCC+AGG + chr4_1:45264822-45264841 None:intergenic 35.0%
!! TGTTCAATAGTTTGAGTTGC+CGG - chr4_1:45264888-45264907 Msa0549940:intron 35.0%
!! TAGAAGTTGAATTTTAGCGC+GGG - chr4_1:45264927-45264946 Msa0549940:CDS 35.0%
! ATGCATTGTGGTTTAAAACC+AGG + chr4_1:45265014-45265033 None:intergenic 35.0%
AGTCATGTATCTATTGTTCC+AGG + chr4_1:45264822-45264841 None:intergenic 35.0%
!! TGTTCAATAGTTTGAGTTGC+CGG - chr4_1:45264888-45264907 Msa0549940:intron 35.0%
!! TAGAAGTTGAATTTTAGCGC+GGG - chr4_1:45264927-45264946 Msa0549940:CDS 35.0%
! CTCATCAATGGTTTAAAACC+AGG + chr4_1:45265258-45265277 None:intergenic 35.0%
TTTCCAATAGTCCATTCTGT+TGG + chr4_1:45265285-45265304 None:intergenic 35.0%
TTCTGTACTCCAAAAAGAAG+GGG + chr4_1:45265510-45265529 None:intergenic 35.0%
!!! CAGTTTTCTTTCTGTTTCTG+AGG - chr4_1:45265599-45265618 Msa0549940:intron 35.0%
TAAGTTAATGCGACTGAGAA+TGG - chr4_1:45265657-45265676 Msa0549940:intron 35.0%
ATATATATTGGAGAGTTGGG+GGG - chr4_1:45265833-45265852 Msa0549940:intron 35.0%
CCAGAATTGAGAGGAATATT+GGG - chr4_1:45265870-45265889 Msa0549940:intron 35.0%
AATTGAGAGGAATATTGGGT+TGG - chr4_1:45265874-45265893 Msa0549940:intron 35.0%
ATTGAGAGGAATATTGGGTT+GGG - chr4_1:45265875-45265894 Msa0549940:intron 35.0%
AAATGATAAACCTGATGGGA+AGG + chr4_1:45265927-45265946 None:intergenic 35.0%
CAAATGGACAAATGGCTAAA+GGG + chr4_1:45266159-45266178 None:intergenic 35.0%
ACAAATGGACAAATGGCTAA+AGG + chr4_1:45266160-45266179 None:intergenic 35.0%
GAGGAAAAATCCTGAAACTT+GGG + chr4_1:45266346-45266365 None:intergenic 35.0%
AGAGGAAAAATCCTGAAACT+TGG + chr4_1:45266347-45266366 None:intergenic 35.0%
GGAAAAATAAGTCCCAAACT+GGG + chr4_1:45266373-45266392 None:intergenic 35.0%
!! GAGACTTATTTTTCATGACG+TGG + chr4_1:45266467-45266486 None:intergenic 35.0%
AGTCTCAAATTTGATTGTGG+GGG - chr4_1:45266481-45266500 Msa0549940:intron 35.0%
! CTTGTAACTTGTGAAACATG+AGG - chr4_1:45266509-45266528 Msa0549940:intron 35.0%
GAAATGAGGGGAATAAAATC+CGG - chr4_1:45266550-45266569 Msa0549940:intron 35.0%
! ATCCGGCTCTAGTTAAAAAT+AGG - chr4_1:45266567-45266586 Msa0549940:intron 35.0%
! TCCGGCTCTAGTTAAAAATA+GGG - chr4_1:45266568-45266587 Msa0549940:intron 35.0%
!!! TCCCTATTTTTAACTAGAGC+CGG + chr4_1:45266572-45266591 None:intergenic 35.0%
AGAGGCAGATACAAAAATAC+CGG + chr4_1:45266643-45266662 None:intergenic 35.0%
!! TTGGAGTTTGGTCTTATTGA+TGG - chr4_1:45266677-45266696 Msa0549940:CDS 35.0%
AGATTCAATACTCTGTTTCC+AGG + chr4_1:45266706-45266725 None:intergenic 35.0%
TGACAATGTGAAGTAGTTTG+GGG + chr4_1:45266934-45266953 None:intergenic 35.0%
! CTCAACTTACGTTTTCTCAC+AGG - chr4_1:45262032-45262051 Msa0549940:three_prime_UTR 40.0%
AGGAAGAAGATATCGTGCAA+GGG + chr4_1:45262140-45262159 None:intergenic 40.0%
AAGGAAGAAGATATCGTGCA+AGG + chr4_1:45262141-45262160 None:intergenic 40.0%
GGCTTATCAAGTAAAACCCA+TGG - chr4_1:45262583-45262602 Msa0549940:intron 40.0%
GTACACATGATGTTGGTACA+AGG - chr4_1:45262632-45262651 Msa0549940:intron 40.0%
AATCACAGAAAGTCAGGCTT+CGG + chr4_1:45262770-45262789 None:intergenic 40.0%
AACATTCAGCTTATAGACCG+TGG - chr4_1:45262864-45262883 Msa0549940:intron 40.0%
ATTCTAAATACGCCATGCCA+CGG + chr4_1:45262884-45262903 None:intergenic 40.0%
! TGGGCTTTAACTCATTTCAG+AGG + chr4_1:45263167-45263186 None:intergenic 40.0%
!! ATGATAGCTGGTGTTATTGG+CGG + chr4_1:45263287-45263306 None:intergenic 40.0%
!! GTCATGATAGCTGGTGTTAT+TGG + chr4_1:45263290-45263309 None:intergenic 40.0%
TTTGTGTGTGTGTGTAAGGT+AGG + chr4_1:45263645-45263664 None:intergenic 40.0%
TCAACCACAATGTGGATATG+GGG - chr4_1:45263893-45263912 Msa0549940:intron 40.0%
!! AGACGATACTGATTTGGTGT+AGG - chr4_1:45263997-45264016 Msa0549940:intron 40.0%
!! TACTGATTTGGTGTAGGAAG+AGG - chr4_1:45264003-45264022 Msa0549940:intron 40.0%
GAAGTTTGTAAACTGTAGGG+AGG + chr4_1:45264151-45264170 None:intergenic 40.0%
AGGTTATGTCCAATGCAACT+TGG + chr4_1:45264224-45264243 None:intergenic 40.0%
AGGAAGAAAGACTAACATGG+CGG + chr4_1:45264610-45264629 None:intergenic 40.0%
CAGAGGAAGAAAGACTAACA+TGG + chr4_1:45264613-45264632 None:intergenic 40.0%
GTCCCAACACTATACATTCA+AGG + chr4_1:45264758-45264777 None:intergenic 40.0%
TCCAGGTAAAGAATTCAACG+AGG + chr4_1:45264805-45264824 None:intergenic 40.0%
CTATTAACAAGATTGGGGAC+CGG + chr4_1:45264910-45264929 None:intergenic 40.0%
! CATTTGGGCTTTTAGCAAGA+TGG + chr4_1:45264972-45264991 None:intergenic 40.0%
CTCCTCACACAAAGTCATTT+GGG + chr4_1:45264987-45265006 None:intergenic 40.0%
ACTCCTCACACAAAGTCATT+TGG + chr4_1:45264988-45265007 None:intergenic 40.0%
! CAGTGCATGATAATGCATTG+TGG + chr4_1:45264782-45264801 None:intergenic 40.0%
TCCAGGTAAAGAATTCAACG+AGG + chr4_1:45264805-45264824 None:intergenic 40.0%
CTATTAACAAGATTGGGGAC+CGG + chr4_1:45264910-45264929 None:intergenic 40.0%
! CATTTGGGCTTTTAGCAAGA+TGG + chr4_1:45264972-45264991 None:intergenic 40.0%
CTCCTCACACAAAGTCATTT+GGG + chr4_1:45264987-45265006 None:intergenic 40.0%
ACTCCTCACACAAAGTCATT+TGG + chr4_1:45264988-45265007 None:intergenic 40.0%
CAATAGTCCATTCTGTTGGA+TGG + chr4_1:45265281-45265300 None:intergenic 40.0%
!! CATCCAACAGAATGGACTAT+TGG - chr4_1:45265279-45265298 Msa0549940:intron 40.0%
TCTTCATGCTCAAGTTACCA+TGG - chr4_1:45265380-45265399 Msa0549940:intron 40.0%
TCTGTACTCCAAAAAGAAGG+GGG + chr4_1:45265509-45265528 None:intergenic 40.0%
AAGATGTTCAGTGCTTTCAC+TGG - chr4_1:45265537-45265556 Msa0549940:CDS 40.0%
GCCAGAATTGAGAGGAATAT+TGG - chr4_1:45265869-45265888 Msa0549940:intron 40.0%
CCCAATATTCCTCTCAATTC+TGG + chr4_1:45265873-45265892 None:intergenic 40.0%
!! GAATATTGGGTTGGGTAAGT+CGG - chr4_1:45265883-45265902 Msa0549940:intron 40.0%
!! AATATTGGGTTGGGTAAGTC+GGG - chr4_1:45265884-45265903 Msa0549940:intron 40.0%
! TTTTTCCTCTCAACCCAGTT+TGG - chr4_1:45266357-45266376 Msa0549940:intron 40.0%
! TTTTCCTCTCAACCCAGTTT+GGG - chr4_1:45266358-45266377 Msa0549940:intron 40.0%
GGGAAAAATAAGTCCCAAAC+TGG + chr4_1:45266374-45266393 None:intergenic 40.0%
! TCCTAATTTGCACCAGAAGT+GGG + chr4_1:45266402-45266421 None:intergenic 40.0%
! TTCCTAATTTGCACCAGAAG+TGG + chr4_1:45266403-45266422 None:intergenic 40.0%
GAGGCAGATACAAAAATACC+GGG + chr4_1:45266642-45266661 None:intergenic 40.0%
TATCTGCCTCTTCTCATTTC+AGG - chr4_1:45266652-45266671 Msa0549940:CDS 40.0%
!! TCATTTCAGGCTTTGGAGTT+TGG - chr4_1:45266665-45266684 Msa0549940:CDS 40.0%
! GAAGTAGTTTGGGGTATAAC+TGG + chr4_1:45266925-45266944 None:intergenic 40.0%
GATTCTTCTGTGAGAAGCGA+TGG + chr4_1:45262008-45262027 None:intergenic 45.0%
CGGTGTAATTGAAGCCAAGA+CGG - chr4_1:45263256-45263275 Msa0549940:CDS 45.0%
GGTGTAATTGAAGCCAAGAC+GGG - chr4_1:45263257-45263276 Msa0549940:CDS 45.0%
GTGTAATTGAAGCCAAGACG+GGG - chr4_1:45263258-45263277 Msa0549940:CDS 45.0%
!! TGATAGCTGGTGTTATTGGC+GGG + chr4_1:45263286-45263305 None:intergenic 45.0%
ACAGCCAGTTAACTCACAAG+TGG - chr4_1:45263370-45263389 Msa0549940:intron 45.0%
TGAGCCACTTGTGAGTTAAC+TGG + chr4_1:45263377-45263396 None:intergenic 45.0%
TATATCGCAGCTTGTGACTC+TGG - chr4_1:45263403-45263422 Msa0549940:intron 45.0%
TGTGTGTGTAAGGTAGGATG+GGG + chr4_1:45263639-45263658 None:intergenic 45.0%
GTGTGTGTGTAAGGTAGGAT+GGG + chr4_1:45263640-45263659 None:intergenic 45.0%
TGTGTGTGTGTAAGGTAGGA+TGG + chr4_1:45263641-45263660 None:intergenic 45.0%
CTTACCCCATATCCACATTG+TGG + chr4_1:45263900-45263919 None:intergenic 45.0%
GGAAGAAAGACTAACATGGC+GGG + chr4_1:45264609-45264628 None:intergenic 45.0%
GCCTCGTTGAATTCTTTACC+TGG - chr4_1:45264801-45264820 Msa0549940:intron 45.0%
AGCCCAAATGACTTTGTGTG+AGG - chr4_1:45264982-45265001 Msa0549940:CDS 45.0%
GCCTCGTTGAATTCTTTACC+TGG - chr4_1:45264801-45264820 Msa0549940:intron 45.0%
AGCCCAAATGACTTTGTGTG+AGG - chr4_1:45264982-45265001 Msa0549940:CDS 45.0%
TCTGTTGGATGGCTCATCAA+TGG + chr4_1:45265270-45265289 None:intergenic 45.0%
TGATGAGCCATCCAACAGAA+TGG - chr4_1:45265271-45265290 Msa0549940:intron 45.0%
TAACTAAGTAGCAGCTGCCA+TGG + chr4_1:45265400-45265419 None:intergenic 45.0%
AGGGGGAAGAAGAGGAAAAT+AGG + chr4_1:45265492-45265511 None:intergenic 45.0%
CAAAAAGAAGGGGGAAGAAG+AGG + chr4_1:45265500-45265519 None:intergenic 45.0%
! CTCTTCTTCCCCCTTCTTTT+TGG - chr4_1:45265498-45265517 Msa0549940:CDS 45.0%
CACTGGACAGACATTAGAGA+AGG - chr4_1:45265554-45265573 Msa0549940:CDS 45.0%
!! ATATTGGGTTGGGTAAGTCG+GGG - chr4_1:45265885-45265904 Msa0549940:intron 45.0%
! GTCTGGCTTAAATGCACTTC+TGG - chr4_1:45266259-45266278 Msa0549940:intron 45.0%
! GGATTTTCGTCCCAAGTTTC+AGG - chr4_1:45266333-45266352 Msa0549940:intron 45.0%
! TTTTCCCAACAACCCACTTC+TGG - chr4_1:45266387-45266406 Msa0549940:intron 45.0%
ACCCACTTCTGGTGCAAATT+AGG - chr4_1:45266398-45266417 Msa0549940:intron 45.0%
CCAAAGCCTGAAATGAGAAG+AGG + chr4_1:45266661-45266680 None:intergenic 45.0%
CCTCTTCTCATTTCAGGCTT+TGG - chr4_1:45266658-45266677 Msa0549940:CDS 45.0%
!! TGGTCTTATTGATGGTGTCC+TGG - chr4_1:45266685-45266704 Msa0549940:intron 45.0%
CAAGAAAGAGCCTGCTAAAG+TGG - chr4_1:45266968-45266987 Msa0549940:five_prime_UTR 45.0%
! ATTAACTGCGCCACTTTAGC+AGG + chr4_1:45266981-45267000 None:intergenic 45.0%
TCGCGTGAAGCTCCAAAACA+AGG + chr4_1:45261923-45261942 None:intergenic 50.0%
TGAGAAGCGATGGTGAAGGT+GGG + chr4_1:45261998-45262017 None:intergenic 50.0%
TCTGTGAGAAGCGATGGTGA+AGG + chr4_1:45262002-45262021 None:intergenic 50.0%
TCTTCCTTGCAAAGCCCCTA+TGG - chr4_1:45262153-45262172 Msa0549940:intron 50.0%
ACTACCATAGGGGCTTTGCA+AGG + chr4_1:45262160-45262179 None:intergenic 50.0%
TCAGCTTATAGACCGTGGCA+TGG - chr4_1:45262869-45262888 Msa0549940:intron 50.0%
ACACCAGCTATCATGACTCC+TGG - chr4_1:45263293-45263312 Msa0549940:intron 50.0%
CCGAATAAGTGCTTCCACCA+GGG + chr4_1:45263566-45263585 None:intergenic 50.0%
!! CCCTGGTGGAAGCACTTATT+CGG - chr4_1:45263563-45263582 Msa0549940:intron 50.0%
ACCGAATAAGTGCTTCCACC+AGG + chr4_1:45263567-45263586 None:intergenic 50.0%
GTGGCCACCAAATGCTTTCA+AGG + chr4_1:45263742-45263761 None:intergenic 50.0%
CAAGGAACACTTCTCCTTGC+CGG - chr4_1:45263819-45263838 Msa0549940:intron 50.0%
GCTGATGTGCCAAGTTGCAT+TGG - chr4_1:45264212-45264231 Msa0549940:intron 50.0%
!! AGTTGAATTTTAGCGCGGGC+AGG - chr4_1:45264931-45264950 Msa0549940:CDS 50.0%
CTTTGTGTGAGGAGTTGTCC+TGG - chr4_1:45264993-45265012 Msa0549940:CDS 50.0%
!! AGTTGAATTTTAGCGCGGGC+AGG - chr4_1:45264931-45264950 Msa0549940:CDS 50.0%
CTTTGTGTGAGGAGTTGTCC+TGG - chr4_1:45264993-45265012 Msa0549940:CDS 50.0%
! AGGTGCAAGAGTACACAGAG+AGG - chr4_1:45265574-45265593 Msa0549940:intron 50.0%
! GGTGCAAGAGTACACAGAGA+GGG - chr4_1:45265575-45265594 Msa0549940:intron 50.0%
CTGATGGGAAGGAACCTAGA+GGG + chr4_1:45265916-45265935 None:intergenic 50.0%
! AAGTCCCAAACTGGGTTGAG+AGG + chr4_1:45266365-45266384 None:intergenic 50.0%
!! TGCACCAGAAGTGGGTTGTT+GGG + chr4_1:45266394-45266413 None:intergenic 50.0%
!! TTGCACCAGAAGTGGGTTGT+TGG + chr4_1:45266395-45266414 None:intergenic 50.0%
ATGGTGAAGGTGGGAGTTGC+AGG + chr4_1:45261989-45262008 None:intergenic 55.0%
GTGAGAAGCGATGGTGAAGG+TGG + chr4_1:45261999-45262018 None:intergenic 55.0%
CCTCCAGGAGTCATGATAGC+TGG + chr4_1:45263299-45263318 None:intergenic 55.0%
CCAGCTATCATGACTCCTGG+AGG - chr4_1:45263296-45263315 Msa0549940:intron 55.0%
GAGAGATCAAGAGCTCCTCC+AGG + chr4_1:45263314-45263333 None:intergenic 55.0%
TTCGGAGTAGCTGCAAGCCA+AGG - chr4_1:45263801-45263820 Msa0549940:intron 55.0%
!! CGGCAAGGAGAAGTGTTCCT+TGG + chr4_1:45263821-45263840 None:intergenic 55.0%
GAACACTTCTCCTTGCCGGT+GGG - chr4_1:45263823-45263842 Msa0549940:intron 55.0%
AACACTTCTCCTTGCCGGTG+GGG - chr4_1:45263824-45263843 Msa0549940:intron 55.0%
CTGACTGCAGGGTCATGTTG+AGG - chr4_1:45264550-45264569 Msa0549940:intron 55.0%
GGGGGTAAGCCAGAATTGAG+AGG - chr4_1:45265861-45265880 Msa0549940:intron 55.0%
CCTGATGGGAAGGAACCTAG+AGG + chr4_1:45265917-45265936 None:intergenic 55.0%
CCTCTAGGTTCCTTCCCATC+AGG - chr4_1:45265914-45265933 Msa0549940:intron 55.0%
!! TATTGGCGGGTTCCCCGTCT+TGG + chr4_1:45263273-45263292 None:intergenic 60.0%
GGAACACTTCTCCTTGCCGG+TGG - chr4_1:45263822-45263841 Msa0549940:intron 60.0%
TTGGAGAGTTGGGGGGTCGA+TGG - chr4_1:45265840-45265859 Msa0549940:intron 60.0%
TGGAGAGTTGGGGGGTCGAT+GGG - chr4_1:45265841-45265860 Msa0549940:intron 60.0%
TCTCCTTGCCGGTGGGGAGA+AGG - chr4_1:45263830-45263849 Msa0549940:intron 65.0%
CTCCTTGCCGGTGGGGAGAA+GGG - chr4_1:45263831-45263850 Msa0549940:intron 65.0%
TTCCCTTCTCCCCACCGGCA+AGG + chr4_1:45263836-45263855 None:intergenic 65.0%
GCGCATTCCCTTCTCCCCAC+CGG + chr4_1:45263841-45263860 None:intergenic 65.0%
GGAGAGTTGGGGGGTCGATG+GGG - chr4_1:45265842-45265861 Msa0549940:intron 65.0%
GAGAGTTGGGGGGTCGATGG+GGG - chr4_1:45265843-45265862 Msa0549940:intron 65.0%
GGGTTGGGTAAGTCGGGGCA+AGG - chr4_1:45265890-45265909 Msa0549940:intron 65.0%
AAGTCGGGGCAAGGCCCTCT+AGG - chr4_1:45265899-45265918 Msa0549940:intron 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 45261811 45267026 45261811 ID=Msa0549940;Name=Msa0549940
chr4_1 mRNA 45261811 45267026 45261811 ID=Msa0549940-mRNA-1;Parent=Msa0549940;Name=Msa0549940-mRNA-1;_AED=0.08;_eAED=0.08;_QI=151|1|1|1|0.77|0.7|10|278|274
chr4_1 exon 45261811 45261930 45261811 ID=Msa0549940-mRNA-1:exon:11906;Parent=Msa0549940-mRNA-1
chr4_1 exon 45261958 45262163 45261958 ID=Msa0549940-mRNA-1:exon:11905;Parent=Msa0549940-mRNA-1
chr4_1 exon 45263217 45263309 45263217 ID=Msa0549940-mRNA-1:exon:11904;Parent=Msa0549940-mRNA-1
chr4_1 exon 45264224 45264277 45264224 ID=Msa0549940-mRNA-1:exon:11903;Parent=Msa0549940-mRNA-1
chr4_1 exon 45264923 45265063 45264923 ID=Msa0549940-mRNA-1:exon:11902;Parent=Msa0549940-mRNA-1
chr4_1 exon 45265223 45265288 45265223 ID=Msa0549940-mRNA-1:exon:11901;Parent=Msa0549940-mRNA-1
chr4_1 exon 45265383 45265584 45265383 ID=Msa0549940-mRNA-1:exon:11900;Parent=Msa0549940-mRNA-1
chr4_1 exon 45266184 45266253 45266184 ID=Msa0549940-mRNA-1:exon:11899;Parent=Msa0549940-mRNA-1
chr4_1 exon 45266645 45266703 45266645 ID=Msa0549940-mRNA-1:exon:11898;Parent=Msa0549940-mRNA-1
chr4_1 exon 45266784 45267026 45266784 ID=Msa0549940-mRNA-1:exon:11897;Parent=Msa0549940-mRNA-1
chr4_1 five_prime_UTR 45266876 45267026 45266876 ID=Msa0549940-mRNA-1:five_prime_utr;Parent=Msa0549940-mRNA-1
chr4_1 CDS 45266784 45266875 45266784 ID=Msa0549940-mRNA-1:cds;Parent=Msa0549940-mRNA-1
chr4_1 CDS 45266645 45266703 45266645 ID=Msa0549940-mRNA-1:cds;Parent=Msa0549940-mRNA-1
chr4_1 CDS 45266184 45266253 45266184 ID=Msa0549940-mRNA-1:cds;Parent=Msa0549940-mRNA-1
chr4_1 CDS 45265383 45265584 45265383 ID=Msa0549940-mRNA-1:cds;Parent=Msa0549940-mRNA-1
chr4_1 CDS 45265223 45265288 45265223 ID=Msa0549940-mRNA-1:cds;Parent=Msa0549940-mRNA-1
chr4_1 CDS 45264923 45265063 45264923 ID=Msa0549940-mRNA-1:cds;Parent=Msa0549940-mRNA-1
chr4_1 CDS 45264224 45264277 45264224 ID=Msa0549940-mRNA-1:cds;Parent=Msa0549940-mRNA-1
chr4_1 CDS 45263217 45263309 45263217 ID=Msa0549940-mRNA-1:cds;Parent=Msa0549940-mRNA-1
chr4_1 CDS 45262116 45262163 45262116 ID=Msa0549940-mRNA-1:cds;Parent=Msa0549940-mRNA-1
chr4_1 three_prime_UTR 45261958 45262115 45261958 ID=Msa0549940-mRNA-1:three_prime_utr;Parent=Msa0549940-mRNA-1
chr4_1 three_prime_UTR 45261811 45261930 45261811 ID=Msa0549940-mRNA-1:three_prime_utr;Parent=Msa0549940-mRNA-1
Gene Sequence

>Msa0549940

ATGGTATCTCAAGCGCTATCAGTTCCTGCAACTCCCACCTTCACCATCGCTTCTCACAGAAGAATCCCTTCTCAACTTACGTTTTCTCACAGAAACCCTTGCACGATATCTTCTTCCTTGCAAAGCCCCTATGGTAGTTCTTCTCAAATCGGCTTATCAAGTAAAACCCATGGTTTTAGCTTAAAACTTGATGAGAAAAGTACACATGATGTTGGTACAAGTTACGGTGTAATTGAAGCCAAGACGGGGAACCCGCCAATAACACCAGCTATCATGACTCCTGGAGGAGCTCTTGATCTCTCATCTGTTTTGTTCAGGAATCGTATAATATTCATAGGACAGCCAGTTAACTCACAAGTGGCTCAGAGAGTTATATCGCAGCTTGTGACTCTGGCTACTATTGATCCAGATGCAGATATAATGATGTATATAAATTGCCCTGGTGGAAGCACTTATTCGGTGCTTGCAATTTATGATTGCATGTCTTGGATAAAGCCAAAGGTTGGTACAGTATGTTTCGGAGTAGCTGCAAGCCAAGGAACACTTCTCCTTGCCGGTGGGGAGAAGGGAATGCGCTATTCAATGCCAAATGCTCGCATTATGATGAATCAACCACAATGTGGATATGGGGGTCATGTTGAGGATGTGAGACGTCTAGTGAATGAAGCTGTTCAATCCCGCCATAAAATGGAGAAGATGTTCAGTGCTTTCACTGGACAGACATTAGAGAAGGTGCAAGAGTACACAGAGAGGGACAGTTTTCTTTCTGTTTCTGAGGCTTTGGAGTTTGGTCTTATTGATGGTGTCCTGGAAACAGAGTATTGA

Protein sequence

>Msa0549940

MVSQALSVPATPTFTIASHRRIPSQLTFSHRNPCTISSSLQSPYGSSSQIGLSSKTHGFSLKLDEKSTHDVGTSYGVIEAKTGNPPITPAIMTPGGALDLSSVLFRNRIIFIGQPVNSQVAQRVISQLVTLATIDPDADIMMYINCPGGSTYSVLAIYDCMSWIKPKVGTVCFGVAASQGTLLLAGGEKGMRYSMPNARIMMNQPQCGYGGHVEDVRRLVNEAVQSRHKMEKMFSAFTGQTLEKVQEYTERDSFLSVSEALEFGLIDGVLETEY*