AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0796840


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0796840 MtrunA17_Chr5g0399711 85.427 199 21 3 1 196 1 194 1.20e-117 337
Msa0796840 MtrunA17_Chr3g0102051 44.144 111 58 1 90 196 77 187 3.65e-23 94.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0796840 AT4G17560.1 62.500 136 37 3 62 196 68 190 4.00e-43 147
Msa0796840 AT5G47190.1 51.934 181 66 3 31 196 20 194 7.99e-42 144
Msa0796840 AT1G24240.1 49.351 77 39 0 120 196 112 188 2.86e-21 90.1
Msa0796840 AT4G11630.1 49.351 77 39 0 120 196 115 191 3.30e-21 89.7
Msa0796840 AT5G11750.1 49.351 77 39 0 120 196 119 195 3.92e-21 89.7
Msa0796840 AT5G11750.2 47.436 78 41 0 119 196 142 219 2.09e-20 88.2

Find 98 sgRNAs with CRISPR-Local

Find 221 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATTCTGCATGCTTATTTC+TGG 0.140535 5_3:+8853434 Msa0796840:three_prime_UTR
CAAACTGGAAGATGGGAATT+TGG 0.197875 5_3:+8852368 Msa0796840:CDS
TATGACAATACCTTTATAAA+TGG 0.225579 5_3:-8852120 None:intergenic
TTTCTTAGAGAATATATTAA+AGG 0.251560 5_3:-8853346 None:intergenic
CTCTACGGTCTTCCTCCTTA+TGG 0.262331 5_3:+8850403 Msa0796840:exon
CTTCTTCGACCTCAATTTCA+TGG 0.303030 5_3:+8850671 Msa0796840:CDS
AACTGAAGGAGAACAGGTTT+TGG 0.311686 5_3:+8850816 Msa0796840:CDS
GTCCTACTTGCAGGAAGTTC+CGG 0.324320 5_3:+8852079 Msa0796840:intron
GGCTTCCCAAGTATTTCTTC+AGG 0.325939 5_3:+8850424 Msa0796840:CDS
GTAACTTACCCTTCATTTCC+AGG 0.329154 5_3:+8850647 Msa0796840:CDS
TGTTAAGCTTGGTGATGTTA+TGG 0.331706 5_3:+8850885 Msa0796840:CDS
TCATTTGAAAGTGGAGAATC+TGG 0.340991 5_3:-8853199 None:intergenic
CGTAGGTTATCCATTTATAA+AGG 0.341243 5_3:+8852110 Msa0796840:CDS
TTAATATATTCTCTAAGAAA+TGG 0.343677 5_3:+8853349 Msa0796840:three_prime_UTR
ATTTGAAACAGCCTCGGAAT+TGG 0.345574 5_3:-8850746 None:intergenic
GTCTTGCCTGCCTGACCTTT+CGG 0.348430 5_3:-8853152 None:intergenic
ACTTTGATTTCTTTGATGTT+TGG 0.358077 5_3:-8853120 None:intergenic
GAAGAGAAACCTAGCTTTGT+TGG 0.359069 5_3:-8850595 None:intergenic
GTTAAGCTTGGTGATGTTAT+GGG 0.359187 5_3:+8850886 Msa0796840:CDS
TCAGCATTATCCGAAGCTTC+AGG 0.367212 5_3:-8850781 None:intergenic
TTTGTTGGAGGACATTGATT+AGG 0.374475 5_3:-8850580 None:intergenic
AAACTGGAAGATGGGAATTT+GGG 0.388500 5_3:+8852369 Msa0796840:CDS
GGATAATGCTGATGAAGTTT+CGG 0.394551 5_3:+8850792 Msa0796840:CDS
TTCGGAAACTGAAGGAGAAC+AGG 0.400877 5_3:+8850810 Msa0796840:CDS
ATCATTTCTCAATATTATCA+AGG 0.407701 5_3:-8853389 None:intergenic
TTCTCCACTTTCAAATGATA+AGG 0.412200 5_3:+8853204 Msa0796840:CDS
CGCGTCCGAAGAATTATTGC+CGG 0.419736 5_3:+8852176 Msa0796840:CDS
TTCTTAGAGAATATATTAAA+GGG 0.425998 5_3:-8853345 None:intergenic
CCACAATATCTCCAGTCCTT+AGG 0.437951 5_3:-8851948 None:intergenic
TTGTGCAGATATTGCATAAG+AGG 0.442143 5_3:+8851887 Msa0796840:intron
GATAACCTACGTTTGTTCTC+CGG 0.447583 5_3:-8852098 None:intergenic
AAATCAAAATAAACAAATTG+TGG 0.467588 5_3:-8853294 None:intergenic
AAGAGGTTCAAACTGGAAGA+TGG 0.470246 5_3:+8852360 Msa0796840:CDS
AGGATAGAAGAGGTTCAAAC+TGG 0.476109 5_3:+8852353 Msa0796840:intron
ACGAGAAGCGAGGGTGGAAG+CGG 0.476314 5_3:-8850626 None:intergenic
CGAAGAATTATTGCCGGCAC+AGG 0.476448 5_3:+8852182 Msa0796840:CDS
TTTCCTCTTCTTCCTCTCTA+CGG 0.477516 5_3:+8850388 Msa0796840:five_prime_UTR
CGAAGAAGCCCTGGAAATGA+AGG 0.478400 5_3:-8850656 None:intergenic
GAAATACTTGGGAAGCCATA+AGG 0.484706 5_3:-8850418 None:intergenic
TGATGAAAATCCTGAAGCTT+CGG 0.493188 5_3:+8850771 Msa0796840:CDS
ACGAGTTTGTCTAGGCGGCT+TGG 0.497233 5_3:-8850863 None:intergenic
CTGTGCCGGCAATAATTCTT+CGG 0.499754 5_3:-8852181 None:intergenic
TGGTAAAGCACCGAAAGGTC+AGG 0.504557 5_3:+8853142 Msa0796840:CDS
AATCAAAATAAACAAATTGT+GGG 0.505914 5_3:-8853293 None:intergenic
CAATGTCCTCCAACAAAGCT+AGG 0.507926 5_3:+8850586 Msa0796840:CDS
TCAAAGTAATCTGCTGATCT+CGG 0.512334 5_3:+8853255 Msa0796840:exon
TTTGGATTCTGCATCTGAGG+TGG 0.512535 5_3:+8850834 Msa0796840:CDS
ATATCTCCAGTCCTTAGGTC+AGG 0.513987 5_3:-8851943 None:intergenic
CCTAAGGACTGGAGATATTG+TGG 0.515943 5_3:+8851948 Msa0796840:CDS
TGTCATGCCTATGCTAGTAC+TGG 0.523017 5_3:+8852547 Msa0796840:CDS
TCATTTCTCAATATTATCAA+GGG 0.525906 5_3:-8853388 None:intergenic
GACTATCTCAACCCCTGTGC+CGG 0.526794 5_3:-8852195 None:intergenic
CAGTCCTTCCTTCGCACGTG+TGG 0.528105 5_3:+8850313 None:intergenic
ATCAACATTTGAAACAGCCT+CGG 0.532181 5_3:-8850752 None:intergenic
GGATTCTGCATCTGAGGTGG+AGG 0.532596 5_3:+8850837 Msa0796840:CDS
GTGACCTTATCATTTGAAAG+TGG 0.534354 5_3:-8853208 None:intergenic
TATTCGTTCCACACGTGCGA+AGG 0.535735 5_3:-8850321 None:intergenic
CGTTCCACACGTGCGAAGGA+AGG 0.538613 5_3:-8850317 None:intergenic
TAACTTACCCTTCATTTCCA+GGG 0.543085 5_3:+8850648 Msa0796840:CDS
AGAGGTTCAAACTGGAAGAT+GGG 0.543482 5_3:+8852361 Msa0796840:CDS
AGATATTGTGGAAATCAGAT+TGG 0.543994 5_3:+8851960 Msa0796840:CDS
TTAAGCTTGGTGATGTTATG+GGG 0.548890 5_3:+8850887 Msa0796840:CDS
GTCATATCAAGACAAAATGC+TGG 0.549163 5_3:+8852137 Msa0796840:CDS
AATTGAGGTCGAAGAAGCCC+TGG 0.553413 5_3:-8850665 None:intergenic
ATTACAGCGCCATGAAATTG+AGG 0.558367 5_3:-8850680 None:intergenic
GAGAAACCTAGCTTTGTTGG+AGG 0.558664 5_3:-8850592 None:intergenic
TAACACAAAATGCAGCAGCT+TGG 0.561594 5_3:-8852523 None:intergenic
ACCACTCCTGACCTAAGGAC+TGG 0.565262 5_3:+8851937 Msa0796840:CDS
TCAGCTCTCACAATAAAACT+AGG 0.565579 5_3:-8850721 None:intergenic
GAAGAATTATTGCCGGCACA+GGG 0.573107 5_3:+8852183 Msa0796840:CDS
AGACAAACTCGTGTTAAGCT+TGG 0.574922 5_3:+8850874 Msa0796840:CDS
TGTGGAACGAATAGAAGAAA+CGG 0.576207 5_3:+8850331 Msa0796840:five_prime_UTR
AGACCGTAGAGAGGAAGAAG+AGG 0.581223 5_3:-8850391 None:intergenic
TCCAGTCCTTAGGTCAGGAG+TGG 0.583721 5_3:-8851938 None:intergenic
AGCTTAACACGAGTTTGTCT+AGG 0.586483 5_3:-8850871 None:intergenic
TGAGGACCACTCCTGACCTA+AGG 0.591875 5_3:+8851932 Msa0796840:CDS
CATTTGAAAGTGGAGAATCT+GGG 0.592345 5_3:-8853198 None:intergenic
TAAGTTACGAGAAGCGAGGG+TGG 0.596133 5_3:-8850632 None:intergenic
TGTGCAGATATTGCATAAGA+GGG 0.596182 5_3:+8851888 Msa0796840:intron
TGTTGTGATTAGGATAGAAG+AGG 0.604801 5_3:+8852343 Msa0796840:intron
AAACTAGGTTTAGCAATGAG+AGG 0.610020 5_3:-8850706 None:intergenic
GGGTAAGTTACGAGAAGCGA+GGG 0.612377 5_3:-8850635 None:intergenic
AAAGCACCGAAAGGTCAGGC+AGG 0.614155 5_3:+8853146 Msa0796840:CDS
GATGAAGTTTCGGAAACTGA+AGG 0.614399 5_3:+8850802 Msa0796840:CDS
TAAGGAGGAAGACCGTAGAG+AGG 0.625148 5_3:-8850400 None:intergenic
GAGAGCTGATTCCAATTCCG+AGG 0.627170 5_3:+8850735 Msa0796840:CDS
CATGGTACCAGTACTAGCAT+AGG 0.633475 5_3:-8852554 None:intergenic
CTAGGTTTAGCAATGAGAGG+AGG 0.642127 5_3:-8850703 None:intergenic
TTAACACGAGTTTGTCTAGG+CGG 0.648787 5_3:-8850868 None:intergenic
AAACATCAAAGAAATCAAAG+TGG 0.650615 5_3:+8853122 Msa0796840:CDS
CAAAGTGGTAAAGCACCGAA+AGG 0.655009 5_3:+8853137 Msa0796840:CDS
ATACTTGGGAAGCCATAAGG+AGG 0.658948 5_3:-8850415 None:intergenic
AAGAATTATTGCCGGCACAG+GGG 0.659206 5_3:+8852184 Msa0796840:CDS
TTGCAGCTTCAGATGAAGTG+AGG 0.663436 5_3:+8851914 Msa0796840:CDS
TAAGCTTGGTGATGTTATGG+GGG 0.663709 5_3:+8850888 Msa0796840:CDS
GAAGAAGCCCTGGAAATGAA+GGG 0.680632 5_3:-8850655 None:intergenic
AGGGTAAGTTACGAGAAGCG+AGG 0.688532 5_3:-8850636 None:intergenic
AAGTTCCGGAGAACAAACGT+AGG 0.780898 5_3:+8852093 Msa0796840:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATGCTTATAATAGAAAATT+TGG + chr5_3:8851199-8851218 Msa0796840:intron 15.0%
!!! CTATTTCATTTTCATATATT+TGG - chr5_3:8852464-8852483 None:intergenic 15.0%
!! GTTTATGAAATATGATATTA+AGG + chr5_3:8852926-8852945 Msa0796840:intron 15.0%
!! AATCAAAATAAACAAATTGT+GGG - chr5_3:8853296-8853315 None:intergenic 15.0%
!! AAATCAAAATAAACAAATTG+TGG - chr5_3:8853297-8853316 None:intergenic 15.0%
!! TTCTTAGAGAATATATTAAA+GGG - chr5_3:8853348-8853367 None:intergenic 15.0%
!! TTTCTTAGAGAATATATTAA+AGG - chr5_3:8853349-8853368 None:intergenic 15.0%
!!! TTAATATATTCTCTAAGAAA+TGG + chr5_3:8853349-8853368 Msa0796840:three_prime_UTR 15.0%
!!! AAGTATTTGTTACAATGAAT+TGG - chr5_3:8850491-8850510 None:intergenic 20.0%
!! AGTAGTCTATATATTAACAT+TGG - chr5_3:8851142-8851161 None:intergenic 20.0%
!! AATATTACTTACACATGAAT+AGG + chr5_3:8851243-8851262 Msa0796840:intron 20.0%
!! TTTAAACAACTTCGAATAAT+AGG - chr5_3:8851483-8851502 None:intergenic 20.0%
!! CAAAAATCCAAATTCTAATA+TGG - chr5_3:8851544-8851563 None:intergenic 20.0%
!!! CATATTAGAATTTGGATTTT+TGG + chr5_3:8851542-8851561 Msa0796840:intron 20.0%
!!! CTCATTTTTTTTCTTCTTTT+GGG - chr5_3:8851824-8851843 None:intergenic 20.0%
!! CAAAAGAAGAAAAAAAATGA+GGG + chr5_3:8851823-8851842 Msa0796840:intron 20.0%
!! TCAAATTAATATGTTGAAGA+AGG + chr5_3:8852018-8852037 Msa0796840:intron 20.0%
!! CAAATTAATATGTTGAAGAA+GGG + chr5_3:8852019-8852038 Msa0796840:intron 20.0%
!! ATAAGATGATATGATTTATG+TGG + chr5_3:8852044-8852063 Msa0796840:intron 20.0%
!! TATGACAATACCTTTATAAA+TGG - chr5_3:8852123-8852142 None:intergenic 20.0%
!! TTTCTCCCAATAATTTAATA+GGG + chr5_3:8852247-8852266 Msa0796840:intron 20.0%
!! CTAATCCCTATTAAATTATT+GGG - chr5_3:8852255-8852274 None:intergenic 20.0%
!! ACTAATCCCTATTAAATTAT+TGG - chr5_3:8852256-8852275 None:intergenic 20.0%
!!! TTATAAAATGAAGCGTTTAT+CGG + chr5_3:8853039-8853058 Msa0796840:intron 20.0%
!! TCATTTCTCAATATTATCAA+GGG - chr5_3:8853391-8853410 None:intergenic 20.0%
!! ATCATTTCTCAATATTATCA+AGG - chr5_3:8853392-8853411 None:intergenic 20.0%
! AAAAACCTGAAGAAATACTT+GGG - chr5_3:8850432-8850451 None:intergenic 25.0%
! AAAAAACCTGAAGAAATACT+TGG - chr5_3:8850433-8850452 None:intergenic 25.0%
! TTAATAACAGTATAGAGTCA+TGG - chr5_3:8850927-8850946 None:intergenic 25.0%
! ACTACTAGTAAATGTTCATT+AGG + chr5_3:8851159-8851178 Msa0796840:intron 25.0%
! TACAACACATTTAATGTGTT+GGG - chr5_3:8851620-8851639 None:intergenic 25.0%
! TCAAATAGAAATTTGATCCA+AGG - chr5_3:8851713-8851732 None:intergenic 25.0%
! TGGATCAAATTTCTATTTGA+AGG + chr5_3:8851713-8851732 Msa0796840:intron 25.0%
! ATTTCTATTTGAAGGTTACA+TGG + chr5_3:8851721-8851740 Msa0796840:intron 25.0%
!!! CCTCATTTTTTTTCTTCTTT+TGG - chr5_3:8851825-8851844 None:intergenic 25.0%
! CCAAAAGAAGAAAAAAAATG+AGG + chr5_3:8851822-8851841 Msa0796840:intron 25.0%
! CTATTAAATTATTGGGAGAA+AGG - chr5_3:8852248-8852267 None:intergenic 25.0%
! CTTTCTCCCAATAATTTAAT+AGG + chr5_3:8852246-8852265 Msa0796840:intron 25.0%
! ACCTTTCATTGTTAAGAAAT+TGG + chr5_3:8852604-8852623 Msa0796840:intron 25.0%
! ACCAATTTCTTAACAATGAA+AGG - chr5_3:8852608-8852627 None:intergenic 25.0%
!! CATTGTTAAGAAATTGGTTT+AGG + chr5_3:8852610-8852629 Msa0796840:intron 25.0%
! ATATCCTTGATCTTACAAAT+TGG + chr5_3:8852663-8852682 Msa0796840:intron 25.0%
! GATATCATTAAACAACAACT+AGG - chr5_3:8852770-8852789 None:intergenic 25.0%
! AAAGAACTGCATATGTTTAT+TGG - chr5_3:8852861-8852880 None:intergenic 25.0%
!!! CTTTGCATTATTTTTCTCTA+AGG + chr5_3:8852877-8852896 Msa0796840:intron 25.0%
!! ATTTTATAAGGCAAGGTAAT+GGG - chr5_3:8853028-8853047 None:intergenic 25.0%
!! GATAAACGCTTCATTTTATA+AGG - chr5_3:8853040-8853059 None:intergenic 25.0%
!! ACTTTGATTTCTTTGATGTT+TGG - chr5_3:8853123-8853142 None:intergenic 25.0%
! AAACATCAAAGAAATCAAAG+TGG + chr5_3:8853122-8853141 Msa0796840:CDS 25.0%
TGGATAATAATGAGATGAGA+GGG - chr5_3:8850471-8850490 None:intergenic 30.0%
TTGGATAATAATGAGATGAG+AGG - chr5_3:8850472-8850491 None:intergenic 30.0%
AAATGAAATCTCATGTGTGT+TGG - chr5_3:8851021-8851040 None:intergenic 30.0%
ATTACTTACACATGAATAGG+AGG + chr5_3:8851246-8851265 Msa0796840:intron 30.0%
TATGAGCTCTCATTTAACAA+AGG - chr5_3:8851521-8851540 None:intergenic 30.0%
GCTCATACCATATTAGAATT+TGG + chr5_3:8851534-8851553 Msa0796840:intron 30.0%
!! TTTTTAGTGCTTATAAGGTC+TGG - chr5_3:8851578-8851597 None:intergenic 30.0%
AGACCTTATAAGCACTAAAA+AGG + chr5_3:8851577-8851596 Msa0796840:intron 30.0%
GTTGGGTTTATTCATCAATA+TGG - chr5_3:8851603-8851622 None:intergenic 30.0%
CTACAACACATTTAATGTGT+TGG - chr5_3:8851621-8851640 None:intergenic 30.0%
CATTTCATTTGCCATCATTT+CGG - chr5_3:8851646-8851665 None:intergenic 30.0%
ATCTTCCAACATATTTACCT+TGG + chr5_3:8851693-8851712 Msa0796840:intron 30.0%
TTGATCCAAGGTAAATATGT+TGG - chr5_3:8851701-8851720 None:intergenic 30.0%
AGATATTGTGGAAATCAGAT+TGG + chr5_3:8851960-8851979 Msa0796840:CDS 30.0%
!!! TTTATTTTTGTCCTACTTGC+AGG + chr5_3:8852070-8852089 Msa0796840:intron 30.0%
CGTAGGTTATCCATTTATAA+AGG + chr5_3:8852110-8852129 Msa0796840:CDS 30.0%
! AAGGATATTTTCAGCTGTAT+TGG - chr5_3:8852651-8852670 None:intergenic 30.0%
ATTCAAGCAAATTAGCCAAA+TGG + chr5_3:8852964-8852983 Msa0796840:intron 30.0%
ACGTAATAATGTGATCCATT+TGG - chr5_3:8852982-8853001 None:intergenic 30.0%
! CATTTTATAAGGCAAGGTAA+TGG - chr5_3:8853029-8853048 None:intergenic 30.0%
TTCTCCACTTTCAAATGATA+AGG + chr5_3:8853204-8853223 Msa0796840:CDS 30.0%
TTATTCTGCATGCTTATTTC+TGG + chr5_3:8853434-8853453 Msa0796840:three_prime_UTR 30.0%
TGTGGAACGAATAGAAGAAA+CGG + chr5_3:8850331-8850350 Msa0796840:five_prime_UTR 35.0%
! TTTGTTGGAGGACATTGATT+AGG - chr5_3:8850583-8850602 None:intergenic 35.0%
TAACTTACCCTTCATTTCCA+GGG + chr5_3:8850648-8850667 Msa0796840:CDS 35.0%
AAACTAGGTTTAGCAATGAG+AGG - chr5_3:8850709-8850728 None:intergenic 35.0%
TCAGCTCTCACAATAAAACT+AGG - chr5_3:8850724-8850743 None:intergenic 35.0%
! ATCAACATTTGAAACAGCCT+CGG - chr5_3:8850755-8850774 None:intergenic 35.0%
TGATGAAAATCCTGAAGCTT+CGG + chr5_3:8850771-8850790 Msa0796840:CDS 35.0%
GGATAATGCTGATGAAGTTT+CGG + chr5_3:8850792-8850811 Msa0796840:CDS 35.0%
!! TGTTAAGCTTGGTGATGTTA+TGG + chr5_3:8850885-8850904 Msa0796840:CDS 35.0%
!! GTTAAGCTTGGTGATGTTAT+GGG + chr5_3:8850886-8850905 Msa0796840:CDS 35.0%
!! TTAAGCTTGGTGATGTTATG+GGG + chr5_3:8850887-8850906 Msa0796840:CDS 35.0%
!!! ATTGGTTTTGCCATCCAAAA+AGG - chr5_3:8851300-8851319 None:intergenic 35.0%
AATGTTGTGTTTACGAGGAT+TGG - chr5_3:8851318-8851337 None:intergenic 35.0%
CCTTCTACATAGAATCCAAA+GGG - chr5_3:8851376-8851395 None:intergenic 35.0%
ACCTTCTACATAGAATCCAA+AGG - chr5_3:8851377-8851396 None:intergenic 35.0%
!! CCATTTGCTTTTGACACTTT+CGG - chr5_3:8851423-8851442 None:intergenic 35.0%
TTATAAGGTCTGGATGCATT+TGG - chr5_3:8851568-8851587 None:intergenic 35.0%
!! TGGCCTTTTTAGTGCTTATA+AGG - chr5_3:8851583-8851602 None:intergenic 35.0%
CGAAATGATGGCAAATGAAA+TGG + chr5_3:8851644-8851663 Msa0796840:intron 35.0%
!! TCAATGAACTCTGAAATGCA+TGG + chr5_3:8851858-8851877 Msa0796840:intron 35.0%
TTGTGCAGATATTGCATAAG+AGG + chr5_3:8851887-8851906 Msa0796840:intron 35.0%
TGTGCAGATATTGCATAAGA+GGG + chr5_3:8851888-8851907 Msa0796840:intron 35.0%
GTCATATCAAGACAAAATGC+TGG + chr5_3:8852137-8852156 Msa0796840:CDS 35.0%
! ATTAGTACTGTCATTTGCAC+CGG + chr5_3:8852270-8852289 Msa0796840:intron 35.0%
CATCCAAAAGAAACATTCAC+CGG - chr5_3:8852292-8852311 None:intergenic 35.0%
! ATCCAATTGCTGTTGTGATT+AGG + chr5_3:8852333-8852352 Msa0796840:intron 35.0%
ATCCTAATCACAACAGCAAT+TGG - chr5_3:8852338-8852357 None:intergenic 35.0%
TGTTGTGATTAGGATAGAAG+AGG + chr5_3:8852343-8852362 Msa0796840:intron 35.0%
AAACTGGAAGATGGGAATTT+GGG + chr5_3:8852369-8852388 Msa0796840:CDS 35.0%
!! GCAAAGTTGCAGATTTTAAC+AGG - chr5_3:8852584-8852603 None:intergenic 35.0%
GAGTCCAATTTGTAAGATCA+AGG - chr5_3:8852670-8852689 None:intergenic 35.0%
GTTGGAAAGTCAAACAGAAA+GGG - chr5_3:8852725-8852744 None:intergenic 35.0%
TGTTGGAAAGTCAAACAGAA+AGG - chr5_3:8852726-8852745 None:intergenic 35.0%
! TGTTTGACTTTCCAACACTT+TGG + chr5_3:8852729-8852748 Msa0796840:intron 35.0%
!! AAAAGGCATTTCCAAAGTGT+TGG - chr5_3:8852743-8852762 None:intergenic 35.0%
AACAACAACTAGGACTGAAA+AGG - chr5_3:8852760-8852779 None:intergenic 35.0%
! CTCTTTCCTCTAAAAGAATG+AGG + chr5_3:8852789-8852808 Msa0796840:intron 35.0%
! TCTCAACCTCATTCTTTTAG+AGG - chr5_3:8852798-8852817 None:intergenic 35.0%
GGAATCATGTTAGTGTCAAT+AGG - chr5_3:8853007-8853026 None:intergenic 35.0%
! ACGCTTCATTTTATAAGGCA+AGG - chr5_3:8853035-8853054 None:intergenic 35.0%
CATTTGAAAGTGGAGAATCT+GGG - chr5_3:8853201-8853220 None:intergenic 35.0%
TCATTTGAAAGTGGAGAATC+TGG - chr5_3:8853202-8853221 None:intergenic 35.0%
GTGACCTTATCATTTGAAAG+TGG - chr5_3:8853211-8853230 None:intergenic 35.0%
TCAAAGTAATCTGCTGATCT+CGG + chr5_3:8853255-8853274 Msa0796840:exon 35.0%
TTTCCTCTTCTTCCTCTCTA+CGG + chr5_3:8850388-8850407 Msa0796840:five_prime_UTR 40.0%
GAAATACTTGGGAAGCCATA+AGG - chr5_3:8850421-8850440 None:intergenic 40.0%
!! GAAGAGAAACCTAGCTTTGT+TGG - chr5_3:8850598-8850617 None:intergenic 40.0%
GTAACTTACCCTTCATTTCC+AGG + chr5_3:8850647-8850666 Msa0796840:CDS 40.0%
CTTCTTCGACCTCAATTTCA+TGG + chr5_3:8850671-8850690 Msa0796840:CDS 40.0%
ATTACAGCGCCATGAAATTG+AGG - chr5_3:8850683-8850702 None:intergenic 40.0%
! ATTTGAAACAGCCTCGGAAT+TGG - chr5_3:8850749-8850768 None:intergenic 40.0%
GATGAAGTTTCGGAAACTGA+AGG + chr5_3:8850802-8850821 Msa0796840:CDS 40.0%
! AACTGAAGGAGAACAGGTTT+TGG + chr5_3:8850816-8850835 Msa0796840:CDS 40.0%
TTAACACGAGTTTGTCTAGG+CGG - chr5_3:8850871-8850890 None:intergenic 40.0%
AGCTTAACACGAGTTTGTCT+AGG - chr5_3:8850874-8850893 None:intergenic 40.0%
AGACAAACTCGTGTTAAGCT+TGG + chr5_3:8850874-8850893 Msa0796840:CDS 40.0%
!! TAAGCTTGGTGATGTTATGG+GGG + chr5_3:8850888-8850907 Msa0796840:CDS 40.0%
CCATGAATGTTGTGTTTACG+AGG - chr5_3:8851323-8851342 None:intergenic 40.0%
CCTCGTAAACACAACATTCA+TGG + chr5_3:8851320-8851339 Msa0796840:intron 40.0%
AACACAACATTCATGGACCT+AGG + chr5_3:8851327-8851346 Msa0796840:intron 40.0%
ATGGCAATGTTATGTCTCCT+AGG - chr5_3:8851347-8851366 None:intergenic 40.0%
AGAATCCAAAGGGTTATGCA+TGG - chr5_3:8851366-8851385 None:intergenic 40.0%
CCCTTTGGATTCTATGTAGA+AGG + chr5_3:8851373-8851392 Msa0796840:intron 40.0%
!! CCGAAAGTGTCAAAAGCAAA+TGG + chr5_3:8851420-8851439 Msa0796840:intron 40.0%
TCCTCCTTACAGAGATGAAT+TGG + chr5_3:8851455-8851474 Msa0796840:intron 40.0%
ACCAATTCATCTCTGTAAGG+AGG - chr5_3:8851459-8851478 None:intergenic 40.0%
GGTACCAATTCATCTCTGTA+AGG - chr5_3:8851462-8851481 None:intergenic 40.0%
TGGCAAATGAAATGGCCTAA+AGG + chr5_3:8851652-8851671 Msa0796840:intron 40.0%
CAAATGAAATGGCCTAAAGG+TGG + chr5_3:8851655-8851674 Msa0796840:intron 40.0%
TGGAAGATCTGCCTTAATTG+CGG - chr5_3:8851681-8851700 None:intergenic 40.0%
GATAACCTACGTTTGTTCTC+CGG - chr5_3:8852101-8852120 None:intergenic 40.0%
!! AGAGTGAGGGTACTTACATT+GGG - chr5_3:8852223-8852242 None:intergenic 40.0%
!! AAGAGTGAGGGTACTTACAT+TGG - chr5_3:8852224-8852243 None:intergenic 40.0%
CACAACAGCAATTGGATACA+TGG - chr5_3:8852330-8852349 None:intergenic 40.0%
AGGATAGAAGAGGTTCAAAC+TGG + chr5_3:8852353-8852372 Msa0796840:intron 40.0%
AAGAGGTTCAAACTGGAAGA+TGG + chr5_3:8852360-8852379 Msa0796840:CDS 40.0%
AGAGGTTCAAACTGGAAGAT+GGG + chr5_3:8852361-8852380 Msa0796840:CDS 40.0%
CAAACTGGAAGATGGGAATT+TGG + chr5_3:8852368-8852387 Msa0796840:CDS 40.0%
! TGAAGTCCCTTTAGAGACAT+TGG + chr5_3:8852434-8852453 Msa0796840:intron 40.0%
GGTCATCCAATGTCTCTAAA+GGG - chr5_3:8852443-8852462 None:intergenic 40.0%
TGGTCATCCAATGTCTCTAA+AGG - chr5_3:8852444-8852463 None:intergenic 40.0%
TAACACAAAATGCAGCAGCT+TGG - chr5_3:8852526-8852545 None:intergenic 40.0%
!! CAGATTTTAACAGGCAACCA+TGG - chr5_3:8852575-8852594 None:intergenic 40.0%
ATACTTGGGAAGCCATAAGG+AGG - chr5_3:8850418-8850437 None:intergenic 45.0%
GGCTTCCCAAGTATTTCTTC+AGG + chr5_3:8850424-8850443 Msa0796840:CDS 45.0%
CAATGTCCTCCAACAAAGCT+AGG + chr5_3:8850586-8850605 Msa0796840:CDS 45.0%
!! GAGAAACCTAGCTTTGTTGG+AGG - chr5_3:8850595-8850614 None:intergenic 45.0%
GAAGAAGCCCTGGAAATGAA+GGG - chr5_3:8850658-8850677 None:intergenic 45.0%
CTAGGTTTAGCAATGAGAGG+AGG - chr5_3:8850706-8850725 None:intergenic 45.0%
TCAGCATTATCCGAAGCTTC+AGG - chr5_3:8850784-8850803 None:intergenic 45.0%
TTCGGAAACTGAAGGAGAAC+AGG + chr5_3:8850810-8850829 Msa0796840:CDS 45.0%
!!! GGTTTTGGATTCTGCATCTG+AGG + chr5_3:8850831-8850850 Msa0796840:CDS 45.0%
TTTGGATTCTGCATCTGAGG+TGG + chr5_3:8850834-8850853 Msa0796840:CDS 45.0%
! GCACTGACACTTCAGATCAA+AGG + chr5_3:8850990-8851009 Msa0796840:intron 45.0%
ACACAAACACGAACACCAGA+CGG - chr5_3:8851072-8851091 None:intergenic 45.0%
ACACATGAATAGGAGGCAAG+CGG + chr5_3:8851253-8851272 Msa0796840:intron 45.0%
TGCCATCCAAAAAGGTCTAG+CGG - chr5_3:8851292-8851311 None:intergenic 45.0%
CATTGCCATGCATAACCCTT+TGG + chr5_3:8851358-8851377 Msa0796840:intron 45.0%
TTGCAGCTTCAGATGAAGTG+AGG + chr5_3:8851914-8851933 Msa0796840:CDS 45.0%
ATATCTCCAGTCCTTAGGTC+AGG - chr5_3:8851946-8851965 None:intergenic 45.0%
CCACAATATCTCCAGTCCTT+AGG - chr5_3:8851951-8851970 None:intergenic 45.0%
CCTAAGGACTGGAGATATTG+TGG + chr5_3:8851948-8851967 Msa0796840:CDS 45.0%
AAGTTCCGGAGAACAAACGT+AGG + chr5_3:8852093-8852112 Msa0796840:CDS 45.0%
! CTGTGCCGGCAATAATTCTT+CGG - chr5_3:8852184-8852203 None:intergenic 45.0%
GAAGAATTATTGCCGGCACA+GGG + chr5_3:8852183-8852202 Msa0796840:CDS 45.0%
AAGAATTATTGCCGGCACAG+GGG + chr5_3:8852184-8852203 Msa0796840:CDS 45.0%
!! GCACCGGTGAATGTTTCTTT+TGG + chr5_3:8852286-8852305 Msa0796840:intron 45.0%
! ATACATGGTGATGCACAGCA+AGG - chr5_3:8852315-8852334 None:intergenic 45.0%
TGTCATGCCTATGCTAGTAC+TGG + chr5_3:8852547-8852566 Msa0796840:CDS 45.0%
CATGGTACCAGTACTAGCAT+AGG - chr5_3:8852557-8852576 None:intergenic 45.0%
!! CTATGCTAGTACTGGTACCA+TGG + chr5_3:8852555-8852574 Msa0796840:intron 45.0%
ATTGGACTCACTCACTCCAT+TGG + chr5_3:8852681-8852700 Msa0796840:intron 45.0%
GCACGATTACAACTCTCCAA+TGG - chr5_3:8852700-8852719 None:intergenic 45.0%
!! CAAAGTGGTAAAGCACCGAA+AGG + chr5_3:8853137-8853156 Msa0796840:CDS 45.0%
TATTCGTTCCACACGTGCGA+AGG - chr5_3:8850324-8850343 None:intergenic 50.0%
AGACCGTAGAGAGGAAGAAG+AGG - chr5_3:8850394-8850413 None:intergenic 50.0%
TAAGGAGGAAGACCGTAGAG+AGG - chr5_3:8850403-8850422 None:intergenic 50.0%
CTCTACGGTCTTCCTCCTTA+TGG + chr5_3:8850403-8850422 Msa0796840:exon 50.0%
TAAGTTACGAGAAGCGAGGG+TGG - chr5_3:8850635-8850654 None:intergenic 50.0%
GGGTAAGTTACGAGAAGCGA+GGG - chr5_3:8850638-8850657 None:intergenic 50.0%
AGGGTAAGTTACGAGAAGCG+AGG - chr5_3:8850639-8850658 None:intergenic 50.0%
CGAAGAAGCCCTGGAAATGA+AGG - chr5_3:8850659-8850678 None:intergenic 50.0%
AATTGAGGTCGAAGAAGCCC+TGG - chr5_3:8850668-8850687 None:intergenic 50.0%
! GAGAGCTGATTCCAATTCCG+AGG + chr5_3:8850735-8850754 Msa0796840:CDS 50.0%
CACATGAATAGGAGGCAAGC+GGG + chr5_3:8851254-8851273 Msa0796840:intron 50.0%
TTTCGGCTTCCTAGCATCAG+AGG - chr5_3:8851406-8851425 None:intergenic 50.0%
! GTGTTGTAGCGCCGAAATGA+TGG + chr5_3:8851632-8851651 Msa0796840:intron 50.0%
CCTTAATTGCGGCCACCTTT+AGG - chr5_3:8851670-8851689 None:intergenic 50.0%
CCTAAAGGTGGCCGCAATTA+AGG + chr5_3:8851667-8851686 Msa0796840:intron 50.0%
GTCCTACTTGCAGGAAGTTC+CGG + chr5_3:8852079-8852098 Msa0796840:intron 50.0%
CGCGTCCGAAGAATTATTGC+CGG + chr5_3:8852176-8852195 Msa0796840:CDS 50.0%
CGAAGAATTATTGCCGGCAC+AGG + chr5_3:8852182-8852201 Msa0796840:CDS 50.0%
TGGGAGAAAGGCAAGAGTGA+GGG - chr5_3:8852236-8852255 None:intergenic 50.0%
TTGGGAGAAAGGCAAGAGTG+AGG - chr5_3:8852237-8852256 None:intergenic 50.0%
!! TGGTAAAGCACCGAAAGGTC+AGG + chr5_3:8853142-8853161 Msa0796840:CDS 50.0%
! GGATTCTGCATCTGAGGTGG+AGG + chr5_3:8850837-8850856 Msa0796840:CDS 55.0%
ACGAGTTTGTCTAGGCGGCT+TGG - chr5_3:8850866-8850885 None:intergenic 55.0%
! CGCCGCTAGACCTTTTTGGA+TGG + chr5_3:8851287-8851306 Msa0796840:intron 55.0%
GGTCAACAGCCTCTGATGCT+AGG + chr5_3:8851394-8851413 Msa0796840:intron 55.0%
TGAGGACCACTCCTGACCTA+AGG + chr5_3:8851932-8851951 Msa0796840:CDS 55.0%
ACCACTCCTGACCTAAGGAC+TGG + chr5_3:8851937-8851956 Msa0796840:CDS 55.0%
TCCAGTCCTTAGGTCAGGAG+TGG - chr5_3:8851941-8851960 None:intergenic 55.0%
CTCCGGAACTTCCTGCAAGT+AGG - chr5_3:8852084-8852103 None:intergenic 55.0%
GACTATCTCAACCCCTGTGC+CGG - chr5_3:8852198-8852217 None:intergenic 55.0%
!! AAAGCACCGAAAGGTCAGGC+AGG + chr5_3:8853146-8853165 Msa0796840:CDS 55.0%
GTCTTGCCTGCCTGACCTTT+CGG - chr5_3:8853155-8853174 None:intergenic 55.0%
CGTTCCACACGTGCGAAGGA+AGG - chr5_3:8850320-8850339 None:intergenic 60.0%
ACGAGAAGCGAGGGTGGAAG+CGG - chr5_3:8850629-8850648 None:intergenic 60.0%
CGAGAGTTGTCGTGTCCGTC+TGG + chr5_3:8851054-8851073 Msa0796840:intron 60.0%
! GCTGCGCCGCTAGACCTTTT+TGG + chr5_3:8851283-8851302 Msa0796840:intron 60.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 8850317 8853471 8850317 ID=Msa0796840;Name=Msa0796840
chr5_3 mRNA 8850317 8853471 8850317 ID=Msa0796840-mRNA-1;Parent=Msa0796840;Name=Msa0796840-mRNA-1;_AED=0.17;_eAED=0.17;_QI=105|0.5|0.71|0.71|0.83|0.71|7|200|284
chr5_3 exon 8850317 8850445 8850317 ID=Msa0796840-mRNA-1:exon:3740;Parent=Msa0796840-mRNA-1
chr5_3 exon 8850568 8850909 8850568 ID=Msa0796840-mRNA-1:exon:3741;Parent=Msa0796840-mRNA-1
chr5_3 exon 8851895 8851981 8851895 ID=Msa0796840-mRNA-1:exon:3742;Parent=Msa0796840-mRNA-1
chr5_3 exon 8852092 8852225 8852092 ID=Msa0796840-mRNA-1:exon:3743;Parent=Msa0796840-mRNA-1
chr5_3 exon 8852355 8852410 8852355 ID=Msa0796840-mRNA-1:exon:3744;Parent=Msa0796840-mRNA-1
chr5_3 exon 8852516 8852568 8852516 ID=Msa0796840-mRNA-1:exon:3745;Parent=Msa0796840-mRNA-1
chr5_3 exon 8853113 8853471 8853113 ID=Msa0796840-mRNA-1:exon:3746;Parent=Msa0796840-mRNA-1
chr5_3 five_prime_UTR 8850317 8850421 8850317 ID=Msa0796840-mRNA-1:five_prime_utr;Parent=Msa0796840-mRNA-1
chr5_3 CDS 8850422 8850445 8850422 ID=Msa0796840-mRNA-1:cds;Parent=Msa0796840-mRNA-1
chr5_3 CDS 8850568 8850909 8850568 ID=Msa0796840-mRNA-1:cds;Parent=Msa0796840-mRNA-1
chr5_3 CDS 8851895 8851981 8851895 ID=Msa0796840-mRNA-1:cds;Parent=Msa0796840-mRNA-1
chr5_3 CDS 8852092 8852225 8852092 ID=Msa0796840-mRNA-1:cds;Parent=Msa0796840-mRNA-1
chr5_3 CDS 8852355 8852410 8852355 ID=Msa0796840-mRNA-1:cds;Parent=Msa0796840-mRNA-1
chr5_3 CDS 8852516 8852568 8852516 ID=Msa0796840-mRNA-1:cds;Parent=Msa0796840-mRNA-1
chr5_3 CDS 8853113 8853271 8853113 ID=Msa0796840-mRNA-1:cds;Parent=Msa0796840-mRNA-1
chr5_3 three_prime_UTR 8853272 8853471 8853272 ID=Msa0796840-mRNA-1:three_prime_utr;Parent=Msa0796840-mRNA-1
Gene Sequence

>Msa0796840

ATGGCTTCCCAAGTATTTCTTCAGACACTATTTGCTCCTAATCAATGTCCTCCAACAAAGCTAGGTTTCTCTTCTGCTTGCTCCGCTTCCACCCTCGCTTCTCGTAACTTACCCTTCATTTCCAGGGCTTCTTCGACCTCAATTTCATGGCGCTGTAATCCTCCTCTCATTGCTAAACCTAGTTTTATTGTGAGAGCTGATTCCAATTCCGAGGCTGTTTCAAATGTTGATGAAAATCCTGAAGCTTCGGATAATGCTGATGAAGTTTCGGAAACTGAAGGAGAACAGGTTTTGGATTCTGCATCTGAGGTGGAGGAAGCCAAGCCGCCTAGACAAACTCGTGTTAAGCTTGGTGATGTTATGGGGATATTGCATAAGAGGGCAATTGCAGCTTCAGATGAAGTGAGGACCACTCCTGACCTAAGGACTGGAGATATTGTGGAAATCAGATTGGAAGTTCCGGAGAACAAACGTAGGTTATCCATTTATAAAGGTATTGTCATATCAAGACAAAATGCTGGTATTCACACGACTATTCGCGTCCGAAGAATTATTGCCGGCACAGGGGTTGAGATAGTCTTCCCAATGATAGAAGAGGTTCAAACTGGAAGATGGGAATTTGGGACGAGTTCTTCATTTAACAATTACTTCCAAGCTGCTGCATTTTGTGTTATTGTCATGCCTATGCTAGTACTGTTACTCACCAAACATCAAAGAAATCAAAGTGGTAAAGCACCGAAAGGTCAGGCAGGCAAGACTGTACTATCTAAAAGACAAGCTTCCCAGATTCTCCACTTTCAAATGATAAGGTCACACGCTGTTCATCATGTTCTTATTCTCAAAGTAATCTGCTGA

Protein sequence

>Msa0796840

MASQVFLQTLFAPNQCPPTKLGFSSACSASTLASRNLPFISRASSTSISWRCNPPLIAKPSFIVRADSNSEAVSNVDENPEASDNADEVSETEGEQVLDSASEVEEAKPPRQTRVKLGDVMGILHKRAIAASDEVRTTPDLRTGDIVEIRLEVPENKRRLSIYKGIVISRQNAGIHTTIRVRRIIAGTGVEIVFPMIEEVQTGRWEFGTSSSFNNYFQAAAFCVIVMPMLVLLLTKHQRNQSGKAPKGQAGKTVLSKRQASQILHFQMIRSHAVHHVLILKVIC*