AlfalfaGEDB | Msa0796840

M. sativa cultivar zhongmu-4 / Msa0796840

KEGG: K02884
GO: GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464
PFAM: PF01245.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0796840	XP_003611376.1	85.427	199	21	3	1	196	1	194	1.30e-113	337

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0796840	sp\|P82413\|RK19_SPIOL	49.083	218	69	8	1	196	1	198	9.52e-52	172

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0796840	B7FKU8	85.427	199	21	3	1	196	1	194	6.21e-114	337

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000180	Msa0796840	0.800274	1.556164e-48	-8.615850e-47
Msa0000220	Msa0796840	0.828553	8.435446e-55	-8.615850e-47
Msa0001040	Msa0796840	0.816393	5.660932e-52	-8.615850e-47
Msa0001420	Msa0796840	0.888894	3.935213e-73	-8.615850e-47
Msa0001510	Msa0796840	0.920220	1.686335e-87	-8.615850e-47
Msa0001540	Msa0796840	0.908731	1.240568e-81	-8.615850e-47
Msa0002060	Msa0796840	0.811967	5.371496e-51	-8.615850e-47
Msa0002110	Msa0796840	0.839873	1.221362e-57	-8.615850e-47
Msa0002690	Msa0796840	0.913771	4.178101e-84	-8.615850e-47
Msa0002700	Msa0796840	0.908359	1.862839e-81	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0796840	MtrunA17_Chr5g0399711	85.427	199	21	3	1	196	1	194	1.20e-117	337
Msa0796840	MtrunA17_Chr3g0102051	44.144	111	58	1	90	196	77	187	3.65e-23	94.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0796840	AT4G17560.1	62.500	136	37	3	62	196	68	190	4.00e-43	147
Msa0796840	AT5G47190.1	51.934	181	66	3	31	196	20	194	7.99e-42	144
Msa0796840	AT1G24240.1	49.351	77	39	0	120	196	112	188	2.86e-21	90.1
Msa0796840	AT4G11630.1	49.351	77	39	0	120	196	115	191	3.30e-21	89.7
Msa0796840	AT5G11750.1	49.351	77	39	0	120	196	119	195	3.92e-21	89.7
Msa0796840	AT5G11750.2	47.436	78	41	0	119	196	142	219	2.09e-20	88.2

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Find 98 sgRNAs with CRISPR-Local

Find 221 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATCAAAGAAATCAAAG+TGG	0.650615	5_3:+8853122	Msa0796840:CDS
AAACTAGGTTTAGCAATGAG+AGG	0.610020	5_3:-8850706	None:intergenic
AAACTGGAAGATGGGAATTT+GGG	0.388500	5_3:+8852369	Msa0796840:CDS
AAAGCACCGAAAGGTCAGGC+AGG	0.614155	5_3:+8853146	Msa0796840:CDS
AAATCAAAATAAACAAATTG+TGG	0.467588	5_3:-8853294	None:intergenic
AACTGAAGGAGAACAGGTTT+TGG	0.311686	5_3:+8850816	Msa0796840:CDS
AAGAATTATTGCCGGCACAG+GGG	0.659206	5_3:+8852184	Msa0796840:CDS
AAGAGGTTCAAACTGGAAGA+TGG	0.470246	5_3:+8852360	Msa0796840:CDS
AAGTTCCGGAGAACAAACGT+AGG	0.780898	5_3:+8852093	Msa0796840:CDS
AATCAAAATAAACAAATTGT+GGG	0.505914	5_3:-8853293	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGGATAATAATGAGATGAGA+GGG	-	chr5_3:8850471-8850490	None:intergenic	30.0%
TTGGATAATAATGAGATGAG+AGG	-	chr5_3:8850472-8850491	None:intergenic	30.0%
AAATGAAATCTCATGTGTGT+TGG	-	chr5_3:8851021-8851040	None:intergenic	30.0%
ATTACTTACACATGAATAGG+AGG	+	chr5_3:8851246-8851265	Msa0796840:intron	30.0%
TATGAGCTCTCATTTAACAA+AGG	-	chr5_3:8851521-8851540	None:intergenic	30.0%
GCTCATACCATATTAGAATT+TGG	+	chr5_3:8851534-8851553	Msa0796840:intron	30.0%
AGACCTTATAAGCACTAAAA+AGG	+	chr5_3:8851577-8851596	Msa0796840:intron	30.0%
GTTGGGTTTATTCATCAATA+TGG	-	chr5_3:8851603-8851622	None:intergenic	30.0%
CTACAACACATTTAATGTGT+TGG	-	chr5_3:8851621-8851640	None:intergenic	30.0%
CATTTCATTTGCCATCATTT+CGG	-	chr5_3:8851646-8851665	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_3	gene	8850317	8853471	8850317	ID=Msa0796840;Name=Msa0796840
chr5_3	mRNA	8850317	8853471	8850317	ID=Msa0796840-mRNA-1;Parent=Msa0796840;Name=Msa0796840-mRNA-1;_AED=0.17;_eAED=0.17;_QI=105\|0.5\|0.71\|0.71\|0.83\|0.71\|7\|200\|284
chr5_3	exon	8850317	8850445	8850317	ID=Msa0796840-mRNA-1:exon:3740;Parent=Msa0796840-mRNA-1
chr5_3	exon	8850568	8850909	8850568	ID=Msa0796840-mRNA-1:exon:3741;Parent=Msa0796840-mRNA-1
chr5_3	exon	8851895	8851981	8851895	ID=Msa0796840-mRNA-1:exon:3742;Parent=Msa0796840-mRNA-1
chr5_3	exon	8852092	8852225	8852092	ID=Msa0796840-mRNA-1:exon:3743;Parent=Msa0796840-mRNA-1
chr5_3	exon	8852355	8852410	8852355	ID=Msa0796840-mRNA-1:exon:3744;Parent=Msa0796840-mRNA-1
chr5_3	exon	8852516	8852568	8852516	ID=Msa0796840-mRNA-1:exon:3745;Parent=Msa0796840-mRNA-1
chr5_3	exon	8853113	8853471	8853113	ID=Msa0796840-mRNA-1:exon:3746;Parent=Msa0796840-mRNA-1
chr5_3	five_prime_UTR	8850317	8850421	8850317	ID=Msa0796840-mRNA-1:five_prime_utr;Parent=Msa0796840-mRNA-1
chr5_3	CDS	8850422	8850445	8850422	ID=Msa0796840-mRNA-1:cds;Parent=Msa0796840-mRNA-1
chr5_3	CDS	8850568	8850909	8850568	ID=Msa0796840-mRNA-1:cds;Parent=Msa0796840-mRNA-1
chr5_3	CDS	8851895	8851981	8851895	ID=Msa0796840-mRNA-1:cds;Parent=Msa0796840-mRNA-1
chr5_3	CDS	8852092	8852225	8852092	ID=Msa0796840-mRNA-1:cds;Parent=Msa0796840-mRNA-1
chr5_3	CDS	8852355	8852410	8852355	ID=Msa0796840-mRNA-1:cds;Parent=Msa0796840-mRNA-1
chr5_3	CDS	8852516	8852568	8852516	ID=Msa0796840-mRNA-1:cds;Parent=Msa0796840-mRNA-1
chr5_3	CDS	8853113	8853271	8853113	ID=Msa0796840-mRNA-1:cds;Parent=Msa0796840-mRNA-1
chr5_3	three_prime_UTR	8853272	8853471	8853272	ID=Msa0796840-mRNA-1:three_prime_utr;Parent=Msa0796840-mRNA-1

Gene Sequence

>Msa0796840

ATGGCTTCCCAAGTATTTCTTCAGACACTATTTGCTCCTAATCAATGTCCTCCAACAAAGCTAGGTTTCTCTTCTGCTTGCTCCGCTTCCACCCTCGCTTCTCGTAACTTACCCTTCATTTCCAGGGCTTCTTCGACCTCAATTTCATGGCGCTGTAATCCTCCTCTCATTGCTAAACCTAGTTTTATTGTGAGAGCTGATTCCAATTCCGAGGCTGTTTCAAATGTTGATGAAAATCCTGAAGCTTCGGATAATGCTGATGAAGTTTCGGAAACTGAAGGAGAACAGGTTTTGGATTCTGCATCTGAGGTGGAGGAAGCCAAGCCGCCTAGACAAACTCGTGTTAAGCTTGGTGATGTTATGGGGATATTGCATAAGAGGGCAATTGCAGCTTCAGATGAAGTGAGGACCACTCCTGACCTAAGGACTGGAGATATTGTGGAAATCAGATTGGAAGTTCCGGAGAACAAACGTAGGTTATCCATTTATAAAGGTATTGTCATATCAAGACAAAATGCTGGTATTCACACGACTATTCGCGTCCGAAGAATTATTGCCGGCACAGGGGTTGAGATAGTCTTCCCAATGATAGAAGAGGTTCAAACTGGAAGATGGGAATTTGGGACGAGTTCTTCATTTAACAATTACTTCCAAGCTGCTGCATTTTGTGTTATTGTCATGCCTATGCTAGTACTGTTACTCACCAAACATCAAAGAAATCAAAGTGGTAAAGCACCGAAAGGTCAGGCAGGCAAGACTGTACTATCTAAAAGACAAGCTTCCCAGATTCTCCACTTTCAAATGATAAGGTCACACGCTGTTCATCATGTTCTTATTCTCAAAGTAATCTGCTGA

Protein sequence

>Msa0796840

MASQVFLQTLFAPNQCPPTKLGFSSACSASTLASRNLPFISRASSTSISWRCNPPLIAKPSFIVRADSNSEAVSNVDENPEASDNADEVSETEGEQVLDSASEVEEAKPPRQTRVKLGDVMGILHKRAIAASDEVRTTPDLRTGDIVEIRLEVPENKRRLSIYKGIVISRQNAGIHTTIRVRRIIAGTGVEIVFPMIEEVQTGRWEFGTSSSFNNYFQAAAFCVIVMPMLVLLLTKHQRNQSGKAPKGQAGKTVLSKRQASQILHFQMIRSHAVHHVLILKVIC*