AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1076650


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1076650 MtrunA17_Chr7g0260701 95.588 136 6 0 1 136 1 136 1.03e-83 241
Msa1076650 MtrunA17_Chr1g0184761 74.797 123 30 1 15 136 15 137 4.02e-53 164
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1076650 AT2G30570.1 57.664 137 53 3 1 136 1 133 7.98e-44 140

Find 66 sgRNAs with CRISPR-Local

Find 150 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGATCTTGTTTGGTGTCTT+TGG 0.223893 7_2:-75162490 Msa1076650:CDS
AGCAGATTCTTTCTTTGTTA+TGG 0.226925 7_2:-75162274 Msa1076650:three_prime_UTR
CTTGATGAGGATGAAGATTC+TGG 0.228909 7_2:-75162430 Msa1076650:CDS
TTCTAAGGTGCATATCCTTC+TGG 0.231560 7_2:+75162390 None:intergenic
TTGGTGTCTTTGGTCTTATA+TGG 0.276875 7_2:-75162480 Msa1076650:CDS
CTTCTTGGTTGGATCTTGTT+TGG 0.292250 7_2:-75162499 Msa1076650:CDS
GGACTTAGCAACAATCTTCT+TGG 0.299425 7_2:-75162514 Msa1076650:CDS
GAATCTACATTCAAGGAAAA+TGG 0.303318 7_2:-75162915 Msa1076650:exon
CTTCCAACCTTAGCTATTGA+TGG 0.334379 7_2:+75162703 None:intergenic
ACTTCACTGTGCAATTTCTA+AGG 0.337916 7_2:+75162375 None:intergenic
CAAATCAATTTGTGGGTTCA+TGG 0.342909 7_2:-75162233 Msa1076650:three_prime_UTR
GACCTGCTTCCTTGCACATC+AGG 0.343789 7_2:+75162655 None:intergenic
TAGATTCGGGTATGAGAGTA+TGG 0.368274 7_2:+75162931 None:intergenic
GAAGGAACTGGCCTTCCCTT+TGG 0.386325 7_2:-75162535 Msa1076650:CDS
TCTAAGGTGCATATCCTTCT+GGG 0.390166 7_2:+75162391 None:intergenic
GATGTATCAAATCAATTTGT+GGG 0.406541 7_2:-75162240 Msa1076650:three_prime_UTR
TCTACCAAAGCCATGGCTGC+TGG 0.411412 7_2:+75162574 None:intergenic
TGTTGAGGTGCCAGCAATAA+TGG 0.413871 7_2:+75162889 None:intergenic
ATTTGCTTAATTCAGACAAA+CGG 0.425714 7_2:+75162965 None:intergenic
AAAACTTACCAACAATGGTC+TGG 0.428853 7_2:+75162813 None:intergenic
TAGACTGAATAATTGAAATC+AGG 0.442923 7_2:+75162129 None:intergenic
CATACCCGAATCTACATTCA+AGG 0.443560 7_2:-75162922 Msa1076650:five_prime_UTR
AAAATGGCAACCATTATTGC+TGG 0.451832 7_2:-75162899 Msa1076650:CDS
AAGCCCAGCAGCCATGGCTT+TGG 0.453307 7_2:-75162578 Msa1076650:CDS
TAATATTAGTTTATTAGCAT+TGG 0.456037 7_2:+75163000 None:intergenic
TTTGCTTAATTCAGACAAAC+GGG 0.456535 7_2:+75162966 None:intergenic
TGATGTATCAAATCAATTTG+TGG 0.461243 7_2:-75162241 Msa1076650:three_prime_UTR
TTAGCAACAATCTTCTTGGT+TGG 0.463955 7_2:-75162510 Msa1076650:CDS
TTTGTGCACAAGCAACCTCT+TGG 0.465311 7_2:-75162845 Msa1076650:CDS
AGAATGAGCACTGAAGGAAC+TGG 0.491605 7_2:-75162547 Msa1076650:CDS
CTACCAAAGCCATGGCTGCT+GGG 0.492560 7_2:+75162575 None:intergenic
AGCAGAGATAGCTGCTATCA+AGG 0.498626 7_2:+75162612 None:intergenic
AGCAGGTCAAACATAGGAAT+GGG 0.505396 7_2:-75162640 Msa1076650:CDS
AAATCAATTTGTGGGTTCAT+GGG 0.506046 7_2:-75162232 Msa1076650:three_prime_UTR
CAGAATCTTCATCCTCATCA+AGG 0.507111 7_2:+75162431 None:intergenic
GTCTCATCCCAGACCATTGT+TGG 0.510240 7_2:-75162821 Msa1076650:intron
AACCTGATGTGCAAGGAAGC+AGG 0.522854 7_2:-75162657 Msa1076650:CDS
CTTGTCAAGCCCAGCAGCCA+TGG 0.525662 7_2:-75162584 Msa1076650:CDS
CTAAGGTGCATATCCTTCTG+GGG 0.530728 7_2:+75162392 None:intergenic
AGAGTGAGATGTTCCATTGA+GGG 0.532339 7_2:-75162682 Msa1076650:CDS
AAACTTACCAACAATGGTCT+GGG 0.543127 7_2:+75162814 None:intergenic
AAGCAGGTCAAACATAGGAA+TGG 0.548495 7_2:-75162641 Msa1076650:CDS
AAGATTGTTGCTAAGTCCAA+AGG 0.554462 7_2:+75162519 None:intergenic
CTACGCTTCCTCCCTTGATG+AGG 0.562437 7_2:-75162443 Msa1076650:CDS
TTGCCATCAATAGCTAAGGT+TGG 0.567060 7_2:-75162706 Msa1076650:CDS
AGATTGTTGCTAAGTCCAAA+GGG 0.569327 7_2:+75162520 None:intergenic
ACATCTTCAATCATCCGCAC+AGG 0.569929 7_2:-75162869 Msa1076650:CDS
GATGAGAGAATGAGCACTGA+AGG 0.576075 7_2:-75162553 Msa1076650:CDS
CATGGCTGCTGGGCTTGACA+AGG 0.577276 7_2:+75162585 None:intergenic
AGGATTGCCATCAATAGCTA+AGG 0.584181 7_2:-75162710 Msa1076650:CDS
AAGAGTGAGATGTTCCATTG+AGG 0.585764 7_2:-75162683 Msa1076650:CDS
CAAGGAAGCAGGTCAAACAT+AGG 0.586835 7_2:-75162646 Msa1076650:CDS
ATCCACGCTGTGTGGTGCAT+AGG 0.592101 7_2:-75163034 Msa1076650:five_prime_UTR
TGTCTCTATAAAACCCCAGA+AGG 0.597060 7_2:-75162405 Msa1076650:exon
AGAATCTTCATCCTCATCAA+GGG 0.614208 7_2:+75162432 None:intergenic
TTCATTCTATCCACGCTGTG+TGG 0.619096 7_2:-75163042 Msa1076650:five_prime_UTR
GAGGGAAAACCTGATGTGCA+AGG 0.626356 7_2:-75162664 Msa1076650:CDS
TCTCTCATCTACCAAAGCCA+TGG 0.628797 7_2:+75162567 None:intergenic
ATCTTCATCCTCATCAAGGG+AGG 0.635880 7_2:+75162435 None:intergenic
TGTTGCTAAGTCCAAAGGGA+AGG 0.637762 7_2:+75162524 None:intergenic
TCGGGTATGAGAGTATGGAT+AGG 0.645228 7_2:+75162936 None:intergenic
GCGGATGATTGAAGATGTTG+AGG 0.660911 7_2:+75162874 None:intergenic
AACCTATGCACCACACAGCG+TGG 0.667435 7_2:+75163032 None:intergenic
GAATTTAGAATAAATACACA+AGG 0.671814 7_2:+75162325 None:intergenic
GTCTGGGATGAGACTCCAAG+AGG 0.745215 7_2:+75162830 None:intergenic
GCTTGTGCACAAAACCTGTG+CGG 0.820156 7_2:+75162855 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTATGTTTTTTTTATAACT+TGG + chr7_2:75163007-75163026 None:intergenic 10.0%
!!! ATTATGTTTTTTTTATAACT+TGG + chr7_2:75163007-75163026 None:intergenic 10.0%
!!! TAATATTAGTTTATTAGCAT+TGG + chr7_2:75162183-75162202 None:intergenic 15.0%
!!! GTTTTTTAATACAACAAAAA+AGG + chr7_2:75162831-75162850 None:intergenic 15.0%
!!! TAATATTAGTTTATTAGCAT+TGG + chr7_2:75162183-75162202 None:intergenic 15.0%
!!! GTTTTTTAATACAACAAAAA+AGG + chr7_2:75162831-75162850 None:intergenic 15.0%
!! TTTGATGAAAATGAAATTGT+TGG + chr7_2:75162407-75162426 None:intergenic 20.0%
!! CTTTCAAACATAAATTGTAT+AGG - chr7_2:75162450-75162469 Msa1076650:CDS 20.0%
!!! GAATTTAGAATAAATACACA+AGG + chr7_2:75162858-75162877 None:intergenic 20.0%
!!! AAATTCTAATTTCTCTTTTC+TGG - chr7_2:75162872-75162891 Msa1076650:CDS 20.0%
!!! GTTTTTTTTATAACTTGGAT+TGG + chr7_2:75163002-75163021 None:intergenic 20.0%
!! TTTGATGAAAATGAAATTGT+TGG + chr7_2:75162407-75162426 None:intergenic 20.0%
!! CTTTCAAACATAAATTGTAT+AGG - chr7_2:75162450-75162469 Msa1076650:CDS 20.0%
!!! GAATTTAGAATAAATACACA+AGG + chr7_2:75162858-75162877 None:intergenic 20.0%
!!! AAATTCTAATTTCTCTTTTC+TGG - chr7_2:75162872-75162891 Msa1076650:CDS 20.0%
!!! GTTTTTTTTATAACTTGGAT+TGG + chr7_2:75163002-75163021 None:intergenic 20.0%
! ATTTGCTTAATTCAGACAAA+CGG + chr7_2:75162218-75162237 None:intergenic 25.0%
!! ATTTTCCTTGAATGTAGATT+CGG + chr7_2:75162266-75162285 None:intergenic 25.0%
! TGATGTATCAAATCAATTTG+TGG - chr7_2:75162939-75162958 Msa1076650:five_prime_UTR 25.0%
! GATGTATCAAATCAATTTGT+GGG - chr7_2:75162940-75162959 Msa1076650:five_prime_UTR 25.0%
! ATTTGCTTAATTCAGACAAA+CGG + chr7_2:75162218-75162237 None:intergenic 25.0%
!! ATTTTCCTTGAATGTAGATT+CGG + chr7_2:75162266-75162285 None:intergenic 25.0%
! TGATGTATCAAATCAATTTG+TGG - chr7_2:75162939-75162958 Msa1076650:five_prime_UTR 25.0%
! GATGTATCAAATCAATTTGT+GGG - chr7_2:75162940-75162959 Msa1076650:five_prime_UTR 25.0%
TTTGCTTAATTCAGACAAAC+GGG + chr7_2:75162217-75162236 None:intergenic 30.0%
! TTTTCCTTGAATGTAGATTC+GGG + chr7_2:75162265-75162284 None:intergenic 30.0%
GAATCTACATTCAAGGAAAA+TGG - chr7_2:75162265-75162284 Msa1076650:three_prime_UTR 30.0%
TAGGAAAAACTTACCAACAA+TGG + chr7_2:75162375-75162394 None:intergenic 30.0%
! AAATTGTTGGTTGATTCACT+AGG + chr7_2:75162394-75162413 None:intergenic 30.0%
AGCAGATTCTTTCTTTGTTA+TGG - chr7_2:75162906-75162925 Msa1076650:exon 30.0%
AAATCAATTTGTGGGTTCAT+GGG - chr7_2:75162948-75162967 Msa1076650:five_prime_UTR 30.0%
TTTGCTTAATTCAGACAAAC+GGG + chr7_2:75162217-75162236 None:intergenic 30.0%
! TTTTCCTTGAATGTAGATTC+GGG + chr7_2:75162265-75162284 None:intergenic 30.0%
GAATCTACATTCAAGGAAAA+TGG - chr7_2:75162265-75162284 Msa1076650:three_prime_UTR 30.0%
TAGGAAAAACTTACCAACAA+TGG + chr7_2:75162375-75162394 None:intergenic 30.0%
! AAATTGTTGGTTGATTCACT+AGG + chr7_2:75162394-75162413 None:intergenic 30.0%
AGCAGATTCTTTCTTTGTTA+TGG - chr7_2:75162906-75162925 Msa1076650:exon 30.0%
AAATCAATTTGTGGGTTCAT+GGG - chr7_2:75162948-75162967 Msa1076650:five_prime_UTR 30.0%
AAAATGGCAACCATTATTGC+TGG - chr7_2:75162281-75162300 Msa1076650:three_prime_UTR 35.0%
AAACTTACCAACAATGGTCT+GGG + chr7_2:75162369-75162388 None:intergenic 35.0%
AAAACTTACCAACAATGGTC+TGG + chr7_2:75162370-75162389 None:intergenic 35.0%
AGATTGTTGCTAAGTCCAAA+GGG + chr7_2:75162663-75162682 None:intergenic 35.0%
AAGATTGTTGCTAAGTCCAA+AGG + chr7_2:75162664-75162683 None:intergenic 35.0%
TTAGCAACAATCTTCTTGGT+TGG - chr7_2:75162670-75162689 Msa1076650:CDS 35.0%
!! TTGGTGTCTTTGGTCTTATA+TGG - chr7_2:75162700-75162719 Msa1076650:CDS 35.0%
AGAATCTTCATCCTCATCAA+GGG + chr7_2:75162751-75162770 None:intergenic 35.0%
ACTTCACTGTGCAATTTCTA+AGG + chr7_2:75162808-75162827 None:intergenic 35.0%
CAAATCAATTTGTGGGTTCA+TGG - chr7_2:75162947-75162966 Msa1076650:five_prime_UTR 35.0%
AAAATGGCAACCATTATTGC+TGG - chr7_2:75162281-75162300 Msa1076650:three_prime_UTR 35.0%
AAACTTACCAACAATGGTCT+GGG + chr7_2:75162369-75162388 None:intergenic 35.0%
AAAACTTACCAACAATGGTC+TGG + chr7_2:75162370-75162389 None:intergenic 35.0%
AGATTGTTGCTAAGTCCAAA+GGG + chr7_2:75162663-75162682 None:intergenic 35.0%
AAGATTGTTGCTAAGTCCAA+AGG + chr7_2:75162664-75162683 None:intergenic 35.0%
TTAGCAACAATCTTCTTGGT+TGG - chr7_2:75162670-75162689 Msa1076650:CDS 35.0%
!! TTGGTGTCTTTGGTCTTATA+TGG - chr7_2:75162700-75162719 Msa1076650:CDS 35.0%
AGAATCTTCATCCTCATCAA+GGG + chr7_2:75162751-75162770 None:intergenic 35.0%
ACTTCACTGTGCAATTTCTA+AGG + chr7_2:75162808-75162827 None:intergenic 35.0%
CAAATCAATTTGTGGGTTCA+TGG - chr7_2:75162947-75162966 Msa1076650:five_prime_UTR 35.0%
TAGATTCGGGTATGAGAGTA+TGG + chr7_2:75162252-75162271 None:intergenic 40.0%
CATACCCGAATCTACATTCA+AGG - chr7_2:75162258-75162277 Msa1076650:three_prime_UTR 40.0%
AGGATTGCCATCAATAGCTA+AGG - chr7_2:75162470-75162489 Msa1076650:CDS 40.0%
TTGCCATCAATAGCTAAGGT+TGG - chr7_2:75162474-75162493 Msa1076650:CDS 40.0%
CTTCCAACCTTAGCTATTGA+TGG + chr7_2:75162480-75162499 None:intergenic 40.0%
AAGAGTGAGATGTTCCATTG+AGG - chr7_2:75162497-75162516 Msa1076650:CDS 40.0%
AGAGTGAGATGTTCCATTGA+GGG - chr7_2:75162498-75162517 Msa1076650:CDS 40.0%
AAGCAGGTCAAACATAGGAA+TGG - chr7_2:75162539-75162558 Msa1076650:CDS 40.0%
AGCAGGTCAAACATAGGAAT+GGG - chr7_2:75162540-75162559 Msa1076650:CDS 40.0%
GGACTTAGCAACAATCTTCT+TGG - chr7_2:75162666-75162685 Msa1076650:CDS 40.0%
CTTCTTGGTTGGATCTTGTT+TGG - chr7_2:75162681-75162700 Msa1076650:CDS 40.0%
!! TGGATCTTGTTTGGTGTCTT+TGG - chr7_2:75162690-75162709 Msa1076650:CDS 40.0%
CAGAATCTTCATCCTCATCA+AGG + chr7_2:75162752-75162771 None:intergenic 40.0%
CTTGATGAGGATGAAGATTC+TGG - chr7_2:75162750-75162769 Msa1076650:intron 40.0%
TGTCTCTATAAAACCCCAGA+AGG - chr7_2:75162775-75162794 Msa1076650:intron 40.0%
! TCTAAGGTGCATATCCTTCT+GGG + chr7_2:75162792-75162811 None:intergenic 40.0%
!! TTCTAAGGTGCATATCCTTC+TGG + chr7_2:75162793-75162812 None:intergenic 40.0%
TAGATTCGGGTATGAGAGTA+TGG + chr7_2:75162252-75162271 None:intergenic 40.0%
CATACCCGAATCTACATTCA+AGG - chr7_2:75162258-75162277 Msa1076650:three_prime_UTR 40.0%
AGGATTGCCATCAATAGCTA+AGG - chr7_2:75162470-75162489 Msa1076650:CDS 40.0%
TTGCCATCAATAGCTAAGGT+TGG - chr7_2:75162474-75162493 Msa1076650:CDS 40.0%
CTTCCAACCTTAGCTATTGA+TGG + chr7_2:75162480-75162499 None:intergenic 40.0%
AAGAGTGAGATGTTCCATTG+AGG - chr7_2:75162497-75162516 Msa1076650:CDS 40.0%
AGAGTGAGATGTTCCATTGA+GGG - chr7_2:75162498-75162517 Msa1076650:CDS 40.0%
AAGCAGGTCAAACATAGGAA+TGG - chr7_2:75162539-75162558 Msa1076650:CDS 40.0%
AGCAGGTCAAACATAGGAAT+GGG - chr7_2:75162540-75162559 Msa1076650:CDS 40.0%
GGACTTAGCAACAATCTTCT+TGG - chr7_2:75162666-75162685 Msa1076650:CDS 40.0%
CTTCTTGGTTGGATCTTGTT+TGG - chr7_2:75162681-75162700 Msa1076650:CDS 40.0%
!! TGGATCTTGTTTGGTGTCTT+TGG - chr7_2:75162690-75162709 Msa1076650:CDS 40.0%
CAGAATCTTCATCCTCATCA+AGG + chr7_2:75162752-75162771 None:intergenic 40.0%
CTTGATGAGGATGAAGATTC+TGG - chr7_2:75162750-75162769 Msa1076650:intron 40.0%
TGTCTCTATAAAACCCCAGA+AGG - chr7_2:75162775-75162794 Msa1076650:intron 40.0%
! TCTAAGGTGCATATCCTTCT+GGG + chr7_2:75162792-75162811 None:intergenic 40.0%
!! TTCTAAGGTGCATATCCTTC+TGG + chr7_2:75162793-75162812 None:intergenic 40.0%
! TCGGGTATGAGAGTATGGAT+AGG + chr7_2:75162247-75162266 None:intergenic 45.0%
! TGTTGAGGTGCCAGCAATAA+TGG + chr7_2:75162294-75162313 None:intergenic 45.0%
GCGGATGATTGAAGATGTTG+AGG + chr7_2:75162309-75162328 None:intergenic 45.0%
ACATCTTCAATCATCCGCAC+AGG - chr7_2:75162311-75162330 Msa1076650:three_prime_UTR 45.0%
TTTGTGCACAAGCAACCTCT+TGG - chr7_2:75162335-75162354 Msa1076650:three_prime_UTR 45.0%
! CACATCAGGTTTTCCCTCAA+TGG + chr7_2:75162514-75162533 None:intergenic 45.0%
CAAGGAAGCAGGTCAAACAT+AGG - chr7_2:75162534-75162553 Msa1076650:CDS 45.0%
AGCAGAGATAGCTGCTATCA+AGG + chr7_2:75162571-75162590 None:intergenic 45.0%
TCTCTCATCTACCAAAGCCA+TGG + chr7_2:75162616-75162635 None:intergenic 45.0%
!! GATGAGAGAATGAGCACTGA+AGG - chr7_2:75162627-75162646 Msa1076650:CDS 45.0%
!! AGAATGAGCACTGAAGGAAC+TGG - chr7_2:75162633-75162652 Msa1076650:CDS 45.0%
TGTTGCTAAGTCCAAAGGGA+AGG + chr7_2:75162659-75162678 None:intergenic 45.0%
ATCTTCATCCTCATCAAGGG+AGG + chr7_2:75162748-75162767 None:intergenic 45.0%
CTAAGGTGCATATCCTTCTG+GGG + chr7_2:75162791-75162810 None:intergenic 45.0%
! TCGGGTATGAGAGTATGGAT+AGG + chr7_2:75162247-75162266 None:intergenic 45.0%
! TGTTGAGGTGCCAGCAATAA+TGG + chr7_2:75162294-75162313 None:intergenic 45.0%
GCGGATGATTGAAGATGTTG+AGG + chr7_2:75162309-75162328 None:intergenic 45.0%
ACATCTTCAATCATCCGCAC+AGG - chr7_2:75162311-75162330 Msa1076650:three_prime_UTR 45.0%
TTTGTGCACAAGCAACCTCT+TGG - chr7_2:75162335-75162354 Msa1076650:three_prime_UTR 45.0%
! CACATCAGGTTTTCCCTCAA+TGG + chr7_2:75162514-75162533 None:intergenic 45.0%
CAAGGAAGCAGGTCAAACAT+AGG - chr7_2:75162534-75162553 Msa1076650:CDS 45.0%
AGCAGAGATAGCTGCTATCA+AGG + chr7_2:75162571-75162590 None:intergenic 45.0%
TCTCTCATCTACCAAAGCCA+TGG + chr7_2:75162616-75162635 None:intergenic 45.0%
!! GATGAGAGAATGAGCACTGA+AGG - chr7_2:75162627-75162646 Msa1076650:CDS 45.0%
!! AGAATGAGCACTGAAGGAAC+TGG - chr7_2:75162633-75162652 Msa1076650:CDS 45.0%
TGTTGCTAAGTCCAAAGGGA+AGG + chr7_2:75162659-75162678 None:intergenic 45.0%
ATCTTCATCCTCATCAAGGG+AGG + chr7_2:75162748-75162767 None:intergenic 45.0%
CTAAGGTGCATATCCTTCTG+GGG + chr7_2:75162791-75162810 None:intergenic 45.0%
GCTTGTGCACAAAACCTGTG+CGG + chr7_2:75162328-75162347 None:intergenic 50.0%
GTCTCATCCCAGACCATTGT+TGG - chr7_2:75162359-75162378 Msa1076650:three_prime_UTR 50.0%
GAGGGAAAACCTGATGTGCA+AGG - chr7_2:75162516-75162535 Msa1076650:CDS 50.0%
AACCTGATGTGCAAGGAAGC+AGG - chr7_2:75162523-75162542 Msa1076650:CDS 50.0%
GCTTGTGCACAAAACCTGTG+CGG + chr7_2:75162328-75162347 None:intergenic 50.0%
GTCTCATCCCAGACCATTGT+TGG - chr7_2:75162359-75162378 Msa1076650:three_prime_UTR 50.0%
GAGGGAAAACCTGATGTGCA+AGG - chr7_2:75162516-75162535 Msa1076650:CDS 50.0%
AACCTGATGTGCAAGGAAGC+AGG - chr7_2:75162523-75162542 Msa1076650:CDS 50.0%
ATCCACGCTGTGTGGTGCAT+AGG - chr7_2:75162146-75162165 Msa1076650:three_prime_UTR 55.0%
AACCTATGCACCACACAGCG+TGG + chr7_2:75162151-75162170 None:intergenic 55.0%
! GTCTGGGATGAGACTCCAAG+AGG + chr7_2:75162353-75162372 None:intergenic 55.0%
GACCTGCTTCCTTGCACATC+AGG + chr7_2:75162528-75162547 None:intergenic 55.0%
CTACCAAAGCCATGGCTGCT+GGG + chr7_2:75162608-75162627 None:intergenic 55.0%
TCTACCAAAGCCATGGCTGC+TGG + chr7_2:75162609-75162628 None:intergenic 55.0%
!! GAAGGAACTGGCCTTCCCTT+TGG - chr7_2:75162645-75162664 Msa1076650:CDS 55.0%
CTACGCTTCCTCCCTTGATG+AGG - chr7_2:75162737-75162756 Msa1076650:intron 55.0%
ATCCACGCTGTGTGGTGCAT+AGG - chr7_2:75162146-75162165 Msa1076650:three_prime_UTR 55.0%
AACCTATGCACCACACAGCG+TGG + chr7_2:75162151-75162170 None:intergenic 55.0%
! GTCTGGGATGAGACTCCAAG+AGG + chr7_2:75162353-75162372 None:intergenic 55.0%
GACCTGCTTCCTTGCACATC+AGG + chr7_2:75162528-75162547 None:intergenic 55.0%
CTACCAAAGCCATGGCTGCT+GGG + chr7_2:75162608-75162627 None:intergenic 55.0%
TCTACCAAAGCCATGGCTGC+TGG + chr7_2:75162609-75162628 None:intergenic 55.0%
!! GAAGGAACTGGCCTTCCCTT+TGG - chr7_2:75162645-75162664 Msa1076650:CDS 55.0%
CTACGCTTCCTCCCTTGATG+AGG - chr7_2:75162737-75162756 Msa1076650:intron 55.0%
CATGGCTGCTGGGCTTGACA+AGG + chr7_2:75162598-75162617 None:intergenic 60.0%
CTTGTCAAGCCCAGCAGCCA+TGG - chr7_2:75162596-75162615 Msa1076650:CDS 60.0%
AAGCCCAGCAGCCATGGCTT+TGG - chr7_2:75162602-75162621 Msa1076650:CDS 60.0%
CATGGCTGCTGGGCTTGACA+AGG + chr7_2:75162598-75162617 None:intergenic 60.0%
CTTGTCAAGCCCAGCAGCCA+TGG - chr7_2:75162596-75162615 Msa1076650:CDS 60.0%
AAGCCCAGCAGCCATGGCTT+TGG - chr7_2:75162602-75162621 Msa1076650:CDS 60.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 75162141 75163061 75162141 ID=Msa1076650;Name=Msa1076650
chr7_2 mRNA 75162141 75163061 75162141 ID=Msa1076650-mRNA-1;Parent=Msa1076650;Name=Msa1076650-mRNA-1;_AED=0.39;_eAED=0.39;_QI=143|1|1|1|1|1|2|276|136
chr7_2 exon 75162141 75162730 75162141 ID=Msa1076650-mRNA-1:exon:17872;Parent=Msa1076650-mRNA-1
chr7_2 exon 75162822 75163061 75162822 ID=Msa1076650-mRNA-1:exon:17871;Parent=Msa1076650-mRNA-1
chr7_2 five_prime_UTR 75162919 75163061 75162919 ID=Msa1076650-mRNA-1:five_prime_utr;Parent=Msa1076650-mRNA-1
chr7_2 CDS 75162822 75162918 75162822 ID=Msa1076650-mRNA-1:cds;Parent=Msa1076650-mRNA-1
chr7_2 CDS 75162417 75162730 75162417 ID=Msa1076650-mRNA-1:cds;Parent=Msa1076650-mRNA-1
chr7_2 three_prime_UTR 75162141 75162416 75162141 ID=Msa1076650-mRNA-1:three_prime_utr;Parent=Msa1076650-mRNA-1
Gene Sequence

>Msa1076650

ATGGCAACCATTATTGCTGGCACCTCAACATCTTCAATCATCCGCACAGGTTTTGTGCACAAGCAACCTCTTGGAGTCTCATCCCAGACCATTGTTGGATTGCCATCAATAGCTAAGGTTGGAAGAGTGAGATGTTCCATTGAGGGAAAACCTGATGTGCAAGGAAGCAGGTCAAACATAGGAATGGGAGCATCCTTGATAGCAGCTATCTCTGCTGCAACCTTGTCAAGCCCAGCAGCCATGGCTTTGGTAGATGAGAGAATGAGCACTGAAGGAACTGGCCTTCCCTTTGGACTTAGCAACAATCTTCTTGGTTGGATCTTGTTTGGTGTCTTTGGTCTTATATGGACTCTCTATTTTATCTACGCTTCCTCCCTTGATGAGGATGAAGATTCTGGATTGTCTCTATAA

Protein sequence

>Msa1076650

MATIIAGTSTSSIIRTGFVHKQPLGVSSQTIVGLPSIAKVGRVRCSIEGKPDVQGSRSNIGMGASLIAAISAATLSSPAAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWTLYFIYASSLDEDEDSGLSL*