AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0646030


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0646030 MtrunA17_Chr4g0034751 96.350 274 10 0 1 274 1 274 0.0 553
Msa0646030 MtrunA17_Chr7g0270061 47.929 169 88 0 102 270 111 279 2.90e-51 170
Msa0646030 MtrunA17_Chr1g0194601 46.746 169 90 0 102 270 114 282 3.75e-49 164
Msa0646030 MtrunA17_Chr5g0409311 39.894 188 113 0 86 273 75 262 2.96e-47 159
Msa0646030 MtrunA17_Chr7g0251451 43.103 174 99 0 98 271 78 251 1.08e-45 155
Msa0646030 MtrunA17_Chr4g0038261 40.000 175 105 0 97 271 43 217 1.09e-43 148
Msa0646030 MtrunA17_Chr4g0056771 33.333 183 118 1 93 271 85 267 1.80e-32 120
Msa0646030 MtrunA17_Chr4g0055551 33.333 183 114 1 99 273 104 286 3.36e-24 99.0
Msa0646030 MtrunA17_Chr4g0015831 41.584 101 59 0 98 198 21 121 9.08e-24 93.2
Msa0646030 MtrunA17_CPg0492721 41.584 101 59 0 98 198 21 121 9.08e-24 93.2
Msa0646030 MtrunA17_Chr7g0272191 33.908 174 104 3 108 270 119 292 2.35e-23 97.1
Msa0646030 MtrunA17_Chr1g0184041 42.683 82 47 0 113 194 100 181 9.35e-17 76.3
Msa0646030 MtrunA17_Chr1g0207341 26.630 184 125 2 99 272 155 338 2.54e-16 77.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0646030 AT1G11750.1 68.116 276 81 3 1 274 1 271 2.02e-136 386
Msa0646030 AT1G11750.2 65.398 289 85 3 1 274 1 289 1.88e-134 382
Msa0646030 AT1G02560.1 46.154 169 91 0 102 270 117 285 3.65e-48 162
Msa0646030 AT1G66670.1 43.103 174 99 0 98 271 84 257 2.24e-45 155
Msa0646030 AT5G45390.1 37.853 177 110 0 95 271 75 251 5.01e-43 149
Msa0646030 AT5G23140.1 40.000 175 105 0 97 271 46 220 1.45e-42 146
Msa0646030 AT1G12410.1 35.838 173 111 0 98 270 88 260 1.76e-34 126
Msa0646030 ATCG00670.1 32.948 173 115 1 98 269 21 193 1.33e-32 119
Msa0646030 AT4G17040.1 32.787 183 115 1 99 273 105 287 1.26e-31 119
Msa0646030 AT1G09130.2 35.519 183 107 3 99 270 121 303 1.98e-29 114
Msa0646030 AT1G09130.1 35.519 183 107 3 99 270 121 303 1.98e-29 114
Msa0646030 AT1G09130.3 35.519 183 107 3 99 270 121 303 4.52e-29 114
Msa0646030 AT1G49970.1 27.027 185 125 2 99 273 171 355 3.09e-17 81.3

Find 88 sgRNAs with CRISPR-Local

Find 325 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATTTCAGGCTTTGGAGTT+TGG 0.250950 4_3:+51566062 Msa0646030:intron
ATTGACAATGTGAAGTAGTT+TGG 0.264333 4_3:-51566330 None:intergenic
AATCAACCACAATGTGGATA+TGG 0.278581 4_3:+51563527 Msa0646030:CDS
AGAATTTGAGATTAGATAGA+TGG 0.298287 4_3:+51561503 Msa0646030:five_prime_UTR
TTGGAGTTTGGTCTTATTGA+TGG 0.304151 4_3:+51566074 Msa0646030:CDS
TTGACAATGTGAAGTAGTTT+GGG 0.318141 4_3:-51566329 None:intergenic
GAAGTAGTTTGGGGTATAAC+TGG 0.326493 4_3:-51566319 None:intergenic
AGTTAATGTCAATTTGATAA+TGG 0.341856 4_3:+51566391 Msa0646030:three_prime_UTR
GTCATGATAGCTGGTGTTAT+TGG 0.353594 4_3:-51562923 None:intergenic
ATGGTGAAGGTGGGAGTTGC+AGG 0.355066 4_3:-51561620 None:intergenic
TGATCCAGATGCAGATATAA+TGG 0.359251 4_3:+51563069 Msa0646030:CDS
GATTAGATAGATGGAATAAA+AGG 0.364115 4_3:+51561512 Msa0646030:five_prime_UTR
CCCTGGTGGAAGCACTTATT+CGG 0.393075 4_3:+51563199 Msa0646030:CDS
AGATTCAATACTCTGTTTCC+AGG 0.396606 4_3:-51566100 None:intergenic
CAAGGAACACTTCTCCTTGC+CGG 0.401602 4_3:+51563455 Msa0646030:CDS
TTCATCATAATGCGAGCATT+TGG 0.412758 4_3:-51563506 None:intergenic
AAACATACTGTACCAACCTT+TGG 0.421332 4_3:-51563416 None:intergenic
CAATTTATGATTGCATGTCT+TGG 0.426577 4_3:+51563228 Msa0646030:CDS
ATTAACTGCGCCACTTTAGC+AGG 0.426652 4_3:-51566375 None:intergenic
CAAACCATTATATCTGCATC+TGG 0.434951 4_3:-51563073 None:intergenic
ATCAACCACAATGTGGATAT+GGG 0.440932 4_3:+51563528 Msa0646030:CDS
CAAGAAAGAGCCTGCTAAAG+TGG 0.443383 4_3:+51566365 Msa0646030:three_prime_UTR
TGAGCCACTTGTGAGTTAAC+TGG 0.446998 4_3:-51563010 None:intergenic
TATTGGCGGGTTCCCCGTCT+TGG 0.448456 4_3:-51562906 None:intergenic
TCTCCTTGCCGGTGGGGAGA+AGG 0.458468 4_3:+51563466 Msa0646030:CDS
TCTTCCTTGCAAAGCCCCTA+TGG 0.461392 4_3:+51561787 Msa0646030:CDS
TATGGTAGTTCTTCTCAAAT+CGG 0.473212 4_3:+51561805 Msa0646030:CDS
AGGAATCGTATAATATTCAT+AGG 0.474892 4_3:+51562983 Msa0646030:CDS
TATATCGCAGCTTGTGACTC+TGG 0.483356 4_3:+51563039 Msa0646030:CDS
AATTTATGATTGCATGTCTT+GGG 0.491253 4_3:+51563229 Msa0646030:CDS
AAGATGTTCAGTGCTTTCAC+TGG 0.493292 4_3:+51564934 Msa0646030:CDS
ATGATAGCTGGTGTTATTGG+CGG 0.494864 4_3:-51562920 None:intergenic
TGTGTAATAACGCCTTGTTT+TGG 0.496140 4_3:+51561542 Msa0646030:five_prime_UTR
CTCCTTGCCGGTGGGGAGAA+GGG 0.497877 4_3:+51563467 Msa0646030:CDS
CGGCAAGGAGAAGTGTTCCT+TGG 0.498121 4_3:-51563454 None:intergenic
TGATAGCTGGTGTTATTGGC+GGG 0.501907 4_3:-51562919 None:intergenic
AAGGTTGGTACAGTATGTTT+CGG 0.503063 4_3:+51563419 Msa0646030:CDS
ACACCAGCTATCATGACTCC+TGG 0.503870 4_3:+51562929 Msa0646030:CDS
TGGTCTTATTGATGGTGTCC+TGG 0.508407 4_3:+51566082 Msa0646030:CDS
ACTGGATTCTTAAATCAAAA+CGG 0.511042 4_3:-51566301 None:intergenic
ACCGAATAAGTGCTTCCACC+AGG 0.511860 4_3:-51563200 None:intergenic
GAGAGATCAAGAGCTCCTCC+AGG 0.521114 4_3:-51562947 None:intergenic
CCTCCAGGAGTCATGATAGC+TGG 0.521187 4_3:-51562932 None:intergenic
TTCCCTTCTCCCCACCGGCA+AGG 0.541555 4_3:-51563469 None:intergenic
TGAGAAAACGTAAGTTGAGA+AGG 0.541998 4_3:-51561662 None:intergenic
CGGTGTAATTGAAGCCAAGA+CGG 0.544571 4_3:+51562892 Msa0646030:CDS
GGTGTAATTGAAGCCAAGAC+GGG 0.551793 4_3:+51562893 Msa0646030:CDS
CTTAAATCAAAACGGAAACA+AGG 0.557821 4_3:-51566266 None:intergenic
GTAAGTTGACTTTCATAGAA+CGG 0.558902 4_3:+51566202 Msa0646030:three_prime_UTR
TTTCAGATAAAGCCAAAGGT+TGG 0.559455 4_3:+51563404 Msa0646030:intron
GCGCATTCCCTTCTCCCCAC+CGG 0.570395 4_3:-51563474 None:intergenic
CTTACCCCATATCCACATTG+TGG 0.574250 4_3:-51563533 None:intergenic
GATTTGAGAAGAACTACCAT+AGG 0.577205 4_3:-51561803 None:intergenic
GATTCTTCTGTGAGAAGCGA+TGG 0.577304 4_3:-51561639 None:intergenic
ATTTGAGAAGAACTACCATA+GGG 0.578078 4_3:-51561802 None:intergenic
GAACACTTCTCCTTGCCGGT+GGG 0.588591 4_3:+51563459 Msa0646030:CDS
CACTGGACAGACATTAGAGA+AGG 0.591851 4_3:+51564951 Msa0646030:CDS
GGAAGAAAGACTAACATGGC+GGG 0.596977 4_3:-51564244 None:intergenic
AACACTTCTCCTTGCCGGTG+GGG 0.597362 4_3:+51563460 Msa0646030:CDS
GGCTTATCAAGTAAAACCCA+TGG 0.598446 4_3:+51562217 Msa0646030:intron
CAGATGTATATAAATTGCCC+TGG 0.599214 4_3:+51563182 Msa0646030:intron
TCGCGTGAAGCTCCAAAACA+AGG 0.599276 4_3:-51561554 None:intergenic
GGAACACTTCTCCTTGCCGG+TGG 0.600384 4_3:+51563458 Msa0646030:CDS
GTACACATGATGTTGGTACA+AGG 0.602280 4_3:+51562266 Msa0646030:CDS
GAGAAAACGTAAGTTGAGAA+GGG 0.606921 4_3:-51561661 None:intergenic
GTGAGAAGCGATGGTGAAGG+TGG 0.617082 4_3:-51561630 None:intergenic
TTAAATCAAAACGGAAACAA+GGG 0.617984 4_3:-51566265 None:intergenic
AAGGAAGAAGATATCGTGCA+AGG 0.618347 4_3:-51561772 None:intergenic
AGGAAGAAGATATCGTGCAA+GGG 0.624121 4_3:-51561771 None:intergenic
TCAACCACAATGTGGATATG+GGG 0.624507 4_3:+51563529 Msa0646030:CDS
ATGTATATAAATTGCCCTGG+TGG 0.625092 4_3:+51563185 Msa0646030:CDS
TGACAATGTGAAGTAGTTTG+GGG 0.627479 4_3:-51566328 None:intergenic
TTCGGAGTAGCTGCAAGCCA+AGG 0.633505 4_3:+51563437 Msa0646030:CDS
GAGAAAAGTACACATGATGT+TGG 0.647062 4_3:+51562259 Msa0646030:CDS
GTTTCAAACAAAACAAACAA+TGG 0.650736 4_3:+51561577 Msa0646030:exon
CCGAATAAGTGCTTCCACCA+GGG 0.650767 4_3:-51563199 None:intergenic
ATATTCATTCATGACTCATG+AGG 0.657188 4_3:-51566169 None:intergenic
GGTGCAAGAGTACACAGAGA+GGG 0.660689 4_3:+51564972 Msa0646030:CDS
AGGTGCAAGAGTACACAGAG+AGG 0.664297 4_3:+51564971 Msa0646030:CDS
ACTACCATAGGGGCTTTGCA+AGG 0.666249 4_3:-51561791 None:intergenic
ACAGCCAGTTAACTCACAAG+TGG 0.670821 4_3:+51563006 Msa0646030:CDS
GTGTAATTGAAGCCAAGACG+GGG 0.677616 4_3:+51562894 Msa0646030:CDS
CTGACTGCAGGGTCATGTTG+AGG 0.678728 4_3:+51564188 Msa0646030:intron
TGAGAAGCGATGGTGAAGGT+GGG 0.692078 4_3:-51561629 None:intergenic
ATGATGAATCAACCACAATG+TGG 0.708739 4_3:+51563521 Msa0646030:CDS
CCAGCTATCATGACTCCTGG+AGG 0.717326 4_3:+51562932 Msa0646030:CDS
TCTGTGAGAAGCGATGGTGA+AGG 0.733173 4_3:-51561633 None:intergenic
TTTGAGAAGAACTACCATAG+GGG 0.735308 4_3:-51561801 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAAAAAATATATTAATTT+AGG + chr4_3:51561972-51561991 Msa0646030:intron 0.0%
!! ATAAAAAATATATTAATTTA+GGG + chr4_3:51561973-51561992 Msa0646030:intron 0.0%
!!! TATATATATTTTTTAACAAG+AGG + chr4_3:51561474-51561493 Msa0646030:five_prime_UTR 10.0%
!! TTGATAAATTTATATACTTT+AGG + chr4_3:51562034-51562053 Msa0646030:intron 10.0%
!! TGATAAATTTATATACTTTA+GGG + chr4_3:51562035-51562054 Msa0646030:intron 10.0%
!!! AATTGAATTATTTTGTAAAT+GGG + chr4_3:51562718-51562737 Msa0646030:intron 10.0%
!!! ATCAAAGTTTTTATATATAT+TGG + chr4_3:51565218-51565237 Msa0646030:intron 10.0%
!!! GAATTGAATTATTTTGTAAA+TGG + chr4_3:51562717-51562736 Msa0646030:intron 15.0%
!!! TTTTAAGTATTAATGAATGA+AGG + chr4_3:51562835-51562854 Msa0646030:intron 15.0%
!! TCATAATAAGTAGTTAAATA+CGG + chr4_3:51563708-51563727 Msa0646030:intron 15.0%
!!! ATTTGTTTTGTTATTTACTT+TGG + chr4_3:51565488-51565507 Msa0646030:intron 15.0%
!!! TTTTCTATTGAGTATTATTA+TGG + chr4_3:51565580-51565599 Msa0646030:intron 15.0%
!! CAAAGAAAATTGGATAAAAT+TGG - chr4_3:51561837-51561856 None:intergenic 20.0%
!! AAATAGTAGACAAAGAAAAT+TGG - chr4_3:51561847-51561866 None:intergenic 20.0%
!! AAACAAAAACTCATTCATTT+GGG - chr4_3:51561894-51561913 None:intergenic 20.0%
!! AAAACAAAAACTCATTCATT+TGG - chr4_3:51561895-51561914 None:intergenic 20.0%
!!! TTTTAGTATTTGTTAGTGAT+TGG + chr4_3:51561926-51561945 Msa0646030:intron 20.0%
!! TAGTCAAAAGTCAAATAATA+GGG - chr4_3:51563117-51563136 None:intergenic 20.0%
!! TTAGTCAAAAGTCAAATAAT+AGG - chr4_3:51563118-51563137 None:intergenic 20.0%
!! AAAAACATTGACAACTATTA+AGG - chr4_3:51563354-51563373 None:intergenic 20.0%
!!! AAGCTTTTGAAATTTTGTTA+TGG + chr4_3:51563560-51563579 Msa0646030:intron 20.0%
!!! GACATAACCTTTTAATTTTT+GGG + chr4_3:51563871-51563890 Msa0646030:intron 20.0%
!!! GGAATATCTATAAGTTTTAT+TGG + chr4_3:51563906-51563925 Msa0646030:intron 20.0%
!! ATAGATATACTAAATAACGA+AGG + chr4_3:51564020-51564039 Msa0646030:intron 20.0%
!!! TTTTACATAAAAAAGAGCTA+TGG + chr4_3:51564058-51564077 Msa0646030:intron 20.0%
!!! ATTTTCAATATATGTGAAAC+TGG + chr4_3:51564731-51564750 Msa0646030:intron 20.0%
!!! TTTTATATATATTGGAGAGT+TGG + chr4_3:51565226-51565245 Msa0646030:intron 20.0%
!! TTTATATATATTGGAGAGTT+GGG + chr4_3:51565227-51565246 Msa0646030:intron 20.0%
!! AATACATATTATTATGTGAG+TGG + chr4_3:51565405-51565424 Msa0646030:intron 20.0%
!! ATATGATAAGAACTAACAAT+AGG - chr4_3:51565464-51565483 None:intergenic 20.0%
!!! AAATTTTTAGCAGTAAAACA+AGG - chr4_3:51566011-51566030 None:intergenic 20.0%
!! AGTTAATGTCAATTTGATAA+TGG + chr4_3:51566391-51566410 Msa0646030:three_prime_UTR 20.0%
!! AGAATTTGAGATTAGATAGA+TGG + chr4_3:51561503-51561522 Msa0646030:five_prime_UTR 25.0%
! GATTAGATAGATGGAATAAA+AGG + chr4_3:51561512-51561531 Msa0646030:five_prime_UTR 25.0%
! GTTTCAAACAAAACAAACAA+TGG + chr4_3:51561577-51561596 Msa0646030:exon 25.0%
! AACAAAAACTCATTCATTTG+GGG - chr4_3:51561893-51561912 None:intergenic 25.0%
! ATTACACATTTATGCAGTTT+AGG + chr4_3:51562065-51562084 Msa0646030:intron 25.0%
! TTACACATTTATGCAGTTTA+GGG + chr4_3:51562066-51562085 Msa0646030:intron 25.0%
! GTATAATGTGTTTGTTTAGT+AGG + chr4_3:51562338-51562357 Msa0646030:intron 25.0%
! ATGAAAAAATGGACAATACT+AGG - chr4_3:51562377-51562396 None:intergenic 25.0%
!!! TAGTATTGTCCATTTTTTCA+TGG + chr4_3:51562376-51562395 Msa0646030:intron 25.0%
!! GTAAGGGTATATAAGTAATT+AGG + chr4_3:51562444-51562463 Msa0646030:intron 25.0%
! GTCAATTTATGAGATGTAAT+TGG - chr4_3:51562646-51562665 None:intergenic 25.0%
! TCTTGAACTTTGATACTTTA+AGG + chr4_3:51562774-51562793 Msa0646030:intron 25.0%
! AGGAATCGTATAATATTCAT+AGG + chr4_3:51562983-51563002 Msa0646030:CDS 25.0%
!!! ACTTTTGACTAATCTTACAA+TGG + chr4_3:51563126-51563145 Msa0646030:intron 25.0%
! AATTTATGATTGCATGTCTT+GGG + chr4_3:51563229-51563248 Msa0646030:CDS 25.0%
!! ATGCACTTTAGATTTTATGA+TGG + chr4_3:51563586-51563605 Msa0646030:intron 25.0%
! GGATAATAACAATGACAATA+TGG + chr4_3:51563660-51563679 Msa0646030:intron 25.0%
! AATTGATAAAAAGTGAGACT+GGG - chr4_3:51563687-51563706 None:intergenic 25.0%
! TAATTGATAAAAAGTGAGAC+TGG - chr4_3:51563688-51563707 None:intergenic 25.0%
!! TATTTTACTCATATGCTAGA+TGG - chr4_3:51563740-51563759 None:intergenic 25.0%
! ATAGAAGTTTGTAAACTGTA+GGG - chr4_3:51563791-51563810 None:intergenic 25.0%
! TATAGAAGTTTGTAAACTGT+AGG - chr4_3:51563792-51563811 None:intergenic 25.0%
! ACAAACTTCTATAAAACTAG+AGG + chr4_3:51563799-51563818 Msa0646030:intron 25.0%
!!! GGACATAACCTTTTAATTTT+TGG + chr4_3:51563870-51563889 Msa0646030:intron 25.0%
! AACTAGTCCCAAAAATTAAA+AGG - chr4_3:51563881-51563900 None:intergenic 25.0%
! AACTCAAACTATTGAACAAT+CGG - chr4_3:51564524-51564543 None:intergenic 25.0%
! AACTTCTATTAACAAGATTG+GGG - chr4_3:51564553-51564572 None:intergenic 25.0%
! CAACTTCTATTAACAAGATT+GGG - chr4_3:51564554-51564573 None:intergenic 25.0%
! TCAACTTCTATTAACAAGAT+TGG - chr4_3:51564555-51564574 None:intergenic 25.0%
! TTGTTAGAAAGAGAATATTC+TGG - chr4_3:51565093-51565112 None:intergenic 25.0%
! TTATATATATTGGAGAGTTG+GGG + chr4_3:51565228-51565247 Msa0646030:intron 25.0%
! CATAAGAACTCTTTACAAAA+GGG - chr4_3:51565375-51565394 None:intergenic 25.0%
! ACATAAGAACTCTTTACAAA+AGG - chr4_3:51565376-51565395 None:intergenic 25.0%
! TAAAGAGTTCTTATGTTGTT+TGG + chr4_3:51565380-51565399 Msa0646030:intron 25.0%
!! AAAGAGTTCTTATGTTGTTT+GGG + chr4_3:51565381-51565400 Msa0646030:intron 25.0%
! GAAGTTTAGTACATTAGTAT+AGG + chr4_3:51565515-51565534 Msa0646030:intron 25.0%
! TTATGATCTTAATAGTTGTC+TGG + chr4_3:51565639-51565658 Msa0646030:intron 25.0%
!!! CAAGTTTTAGTTAAAAGAGA+CGG - chr4_3:51565683-51565702 None:intergenic 25.0%
! ATCCTCTCATTTCTAAATAT+AGG + chr4_3:51565709-51565728 Msa0646030:intron 25.0%
! ATCCTATATTTAGAAATGAG+AGG - chr4_3:51565714-51565733 None:intergenic 25.0%
! ATAAGTCTCAAATTTGATTG+TGG + chr4_3:51565875-51565894 Msa0646030:intron 25.0%
! TAAGTCTCAAATTTGATTGT+GGG + chr4_3:51565876-51565895 Msa0646030:intron 25.0%
! AATATCTGGATTTAGAAATG+AGG + chr4_3:51565933-51565952 Msa0646030:intron 25.0%
! ATATCTGGATTTAGAAATGA+GGG + chr4_3:51565934-51565953 Msa0646030:intron 25.0%
! TTAAATCAAAACGGAAACAA+GGG - chr4_3:51566268-51566287 None:intergenic 25.0%
! TTAAATCAAAACGGAAACAA+GGG - chr4_3:51566268-51566287 None:intergenic 25.0%
! ACTGGATTCTTAAATCAAAA+CGG - chr4_3:51566304-51566323 None:intergenic 25.0%
ATTTGAGAAGAACTACCATA+GGG - chr4_3:51561805-51561824 None:intergenic 30.0%
TATGGTAGTTCTTCTCAAAT+CGG + chr4_3:51561805-51561824 Msa0646030:CDS 30.0%
TAATTTAGGGACTGAATTGA+TGG + chr4_3:51561986-51562005 Msa0646030:intron 30.0%
ATGCAGTTTAGGGATTAAAT+TGG + chr4_3:51562076-51562095 Msa0646030:intron 30.0%
TAAAGCATGTTATGACATGT+AGG + chr4_3:51562179-51562198 Msa0646030:intron 30.0%
!!! AAGTTTTAAGCGAAAACCAT+GGG - chr4_3:51562236-51562255 None:intergenic 30.0%
TACTGGGAAAATAAGTGTAA+GGG + chr4_3:51562428-51562447 Msa0646030:intron 30.0%
! GTAATTAGGTTGTAAAGTAG+TGG + chr4_3:51562458-51562477 Msa0646030:intron 30.0%
TTTCCATAGACTACATAGAT+AGG - chr4_3:51562553-51562572 None:intergenic 30.0%
ACGTAACAATGTGATATGTA+GGG + chr4_3:51562664-51562683 Msa0646030:intron 30.0%
! TTTCAGTTTGCTTGTAGTTA+CGG + chr4_3:51562872-51562891 Msa0646030:intron 30.0%
CAATTTATGATTGCATGTCT+TGG + chr4_3:51563228-51563247 Msa0646030:CDS 30.0%
!!! TTTTTTTGTGTGTGTGTGTA+AGG - chr4_3:51563285-51563304 None:intergenic 30.0%
GGAATTAAAGTAGCTAACAA+AGG - chr4_3:51563333-51563352 None:intergenic 30.0%
!!! GTTTTTACCTTGAAAGCATT+TGG + chr4_3:51563368-51563387 Msa0646030:intron 30.0%
GCTTTATCTGAAAACAAATG+TGG - chr4_3:51563397-51563416 None:intergenic 30.0%
! TTGTTTTCAGATAAAGCCAA+AGG + chr4_3:51563400-51563419 Msa0646030:intron 30.0%
! AGAAAAAGACGATACTGATT+TGG + chr4_3:51563627-51563646 Msa0646030:intron 30.0%
!! AATTTTCAGCATTGAGATTG+AGG + chr4_3:51563827-51563846 Msa0646030:intron 30.0%
ATAGAATGCACTATGTAGTT+TGG + chr4_3:51563987-51564006 Msa0646030:intron 30.0%
! TAAAAAAGAGCTATGGACTA+TGG + chr4_3:51564065-51564084 Msa0646030:intron 30.0%
!! TATGGACTATGGTGTATTTT+TGG + chr4_3:51564076-51564095 Msa0646030:intron 30.0%
! TTATGTGATGTGAAGTGTTT+CGG + chr4_3:51564125-51564144 Msa0646030:intron 30.0%
!! TTTGTTATTAATCTGACTGC+AGG + chr4_3:51564176-51564195 Msa0646030:intron 30.0%
! TTGTTATTAATCTGACTGCA+GGG + chr4_3:51564177-51564196 Msa0646030:intron 30.0%
TAAAAATCATGCAACTTCAG+AGG - chr4_3:51564268-51564287 None:intergenic 30.0%
!!! AACTTAGTTTTGCTGAAAGT+AGG + chr4_3:51564320-51564339 Msa0646030:intron 30.0%
GAACAATAGATACATGACTT+TGG + chr4_3:51564461-51564480 Msa0646030:intron 30.0%
!! ATAGAAGTTGAATTTTAGCG+CGG + chr4_3:51564564-51564583 Msa0646030:intron 30.0%
!! AGAATGGACTATTGGAAATT+TGG + chr4_3:51564681-51564700 Msa0646030:intron 30.0%
ATAGTTTATCTGACAGTTCT+TGG + chr4_3:51564854-51564873 Msa0646030:intron 30.0%
TTTCTGTACTCCAAAAAGAA+GGG - chr4_3:51564908-51564927 None:intergenic 30.0%
! TTTTCTGTACTCCAAAAAGA+AGG - chr4_3:51564909-51564928 None:intergenic 30.0%
!!! TCTTTTTGGAGTACAGAAAA+TGG + chr4_3:51564909-51564928 Msa0646030:intron 30.0%
TATATATATTGGAGAGTTGG+GGG + chr4_3:51565229-51565248 Msa0646030:intron 30.0%
CAGAAAATGATAAACCTGAT+GGG - chr4_3:51565328-51565347 None:intergenic 30.0%
ACAGAAAATGATAAACCTGA+TGG - chr4_3:51565329-51565348 None:intergenic 30.0%
TTACAAAAGGGTTGTAGAAA+TGG - chr4_3:51565363-51565382 None:intergenic 30.0%
AAAACAGACAAATGGACAAA+TGG - chr4_3:51565564-51565583 None:intergenic 30.0%
CTCAATAGAAAACAGACAAA+TGG - chr4_3:51565572-51565591 None:intergenic 30.0%
AAGTCTCAAATTTGATTGTG+GGG + chr4_3:51565877-51565896 Msa0646030:intron 30.0%
AAACATGAGGACTAAATATC+TGG + chr4_3:51565919-51565938 Msa0646030:intron 30.0%
TATCTGGATTTAGAAATGAG+GGG + chr4_3:51565935-51565954 Msa0646030:intron 30.0%
! CTGCTAAAAATTTTCTTACC+CGG + chr4_3:51566018-51566037 Msa0646030:intron 30.0%
ATATTCATTCATGACTCATG+AGG - chr4_3:51566172-51566191 None:intergenic 30.0%
! GTAAGTTGACTTTCATAGAA+CGG + chr4_3:51566202-51566221 Msa0646030:three_prime_UTR 30.0%
!!! TCTAGTTTTGTCTGCTATTA+TGG + chr4_3:51566229-51566248 Msa0646030:three_prime_UTR 30.0%
CTTAAATCAAAACGGAAACA+AGG - chr4_3:51566269-51566288 None:intergenic 30.0%
AAGGGACTCTTAAATCAAAA+CGG - chr4_3:51566277-51566296 None:intergenic 30.0%
CTTAAATCAAAACGGAAACA+AGG - chr4_3:51566269-51566288 None:intergenic 30.0%
TTGACAATGTGAAGTAGTTT+GGG - chr4_3:51566332-51566351 None:intergenic 30.0%
ATTGACAATGTGAAGTAGTT+TGG - chr4_3:51566333-51566352 None:intergenic 30.0%
!!! CACATTGTCAATTTTGAAGT+AGG + chr4_3:51566341-51566360 Msa0646030:three_prime_UTR 30.0%
!!! TGTGTAATAACGCCTTGTTT+TGG + chr4_3:51561542-51561561 Msa0646030:five_prime_UTR 35.0%
! GAGAAAACGTAAGTTGAGAA+GGG - chr4_3:51561664-51561683 None:intergenic 35.0%
! TGAGAAAACGTAAGTTGAGA+AGG - chr4_3:51561665-51561684 None:intergenic 35.0%
GTGAAAGCGAAAGTTGAAAT+GGG - chr4_3:51561711-51561730 None:intergenic 35.0%
AGTGAAAGCGAAAGTTGAAA+TGG - chr4_3:51561712-51561731 None:intergenic 35.0%
TTTGAGAAGAACTACCATAG+GGG - chr4_3:51561804-51561823 None:intergenic 35.0%
GATTTGAGAAGAACTACCAT+AGG - chr4_3:51561806-51561825 None:intergenic 35.0%
GGAAAGAAAGTGATAGTTTG+AGG + chr4_3:51562097-51562116 Msa0646030:intron 35.0%
!!! TGTAGGTTTTTGTTTTACGC+AGG + chr4_3:51562196-51562215 Msa0646030:intron 35.0%
!!! CAAGTTTTAAGCGAAAACCA+TGG - chr4_3:51562237-51562256 None:intergenic 35.0%
! GAGAAAAGTACACATGATGT+TGG + chr4_3:51562259-51562278 Msa0646030:CDS 35.0%
AGCACTTGAAAGAGTAACAA+GGG - chr4_3:51562308-51562327 None:intergenic 35.0%
AAGCACTTGAAAGAGTAACA+AGG - chr4_3:51562309-51562328 None:intergenic 35.0%
TCGGTTGAACCATGAAAAAA+TGG - chr4_3:51562388-51562407 None:intergenic 35.0%
TGACTTTCTGTGATTGTACT+GGG + chr4_3:51562412-51562431 Msa0646030:intron 35.0%
GTACTGGGAAAATAAGTGTA+AGG + chr4_3:51562427-51562446 Msa0646030:intron 35.0%
! GGTCTATAAGCTGAATGTTT+TGG - chr4_3:51562498-51562517 None:intergenic 35.0%
TGACCTATCTATGTAGTCTA+TGG + chr4_3:51562547-51562566 Msa0646030:intron 35.0%
GACGTAACAATGTGATATGT+AGG + chr4_3:51562663-51562682 Msa0646030:intron 35.0%
!! ATCTCTCATCTGTTTTGTTC+AGG + chr4_3:51562963-51562982 Msa0646030:CDS 35.0%
TGATCCAGATGCAGATATAA+TGG + chr4_3:51563069-51563088 Msa0646030:CDS 35.0%
CAAACCATTATATCTGCATC+TGG - chr4_3:51563076-51563095 None:intergenic 35.0%
CAGATGTATATAAATTGCCC+TGG + chr4_3:51563182-51563201 Msa0646030:intron 35.0%
ATGTATATAAATTGCCCTGG+TGG + chr4_3:51563185-51563204 Msa0646030:CDS 35.0%
!! TTTACCTTGAAAGCATTTGG+TGG + chr4_3:51563371-51563390 Msa0646030:intron 35.0%
TTTCAGATAAAGCCAAAGGT+TGG + chr4_3:51563404-51563423 Msa0646030:intron 35.0%
AAACATACTGTACCAACCTT+TGG - chr4_3:51563419-51563438 None:intergenic 35.0%
!! AAGGTTGGTACAGTATGTTT+CGG + chr4_3:51563419-51563438 Msa0646030:CDS 35.0%
TTCATCATAATGCGAGCATT+TGG - chr4_3:51563509-51563528 None:intergenic 35.0%
ATGATGAATCAACCACAATG+TGG + chr4_3:51563521-51563540 Msa0646030:CDS 35.0%
AATCAACCACAATGTGGATA+TGG + chr4_3:51563527-51563546 Msa0646030:CDS 35.0%
ATCAACCACAATGTGGATAT+GGG + chr4_3:51563528-51563547 Msa0646030:CDS 35.0%
!!! ATTTTTGGGACTAGTTGCAA+TGG + chr4_3:51563885-51563904 Msa0646030:intron 35.0%
TGTTTCGGTCAATACTCAAT+AGG + chr4_3:51564140-51564159 Msa0646030:intron 35.0%
TTCAGCAAAACTAAGTTCAC+AGG - chr4_3:51564317-51564336 None:intergenic 35.0%
AACCCTTGAATGTATAGTGT+TGG + chr4_3:51564390-51564409 Msa0646030:intron 35.0%
ACCCTTGAATGTATAGTGTT+GGG + chr4_3:51564391-51564410 Msa0646030:intron 35.0%
TCCCAACACTATACATTCAA+GGG - chr4_3:51564395-51564414 None:intergenic 35.0%
AGTCATGTATCTATTGTTCC+AGG - chr4_3:51564460-51564479 None:intergenic 35.0%
!! TGTTCAATAGTTTGAGTTGC+CGG + chr4_3:51564526-51564545 Msa0646030:intron 35.0%
!! TAGAAGTTGAATTTTAGCGC+GGG + chr4_3:51564565-51564584 Msa0646030:intron 35.0%
! CTCATCAATGGTTTAAAACC+AGG - chr4_3:51564652-51564671 None:intergenic 35.0%
TTTCCAATAGTCCATTCTGT+TGG - chr4_3:51564679-51564698 None:intergenic 35.0%
TTCTGTACTCCAAAAAGAAG+GGG - chr4_3:51564907-51564926 None:intergenic 35.0%
!!! CAGTTTTCTTTCTGTTTCTG+AGG + chr4_3:51564996-51565015 Msa0646030:CDS 35.0%
TAAGTTAATGCGACTGAGAA+TGG + chr4_3:51565054-51565073 Msa0646030:intron 35.0%
ATATATATTGGAGAGTTGGG+GGG + chr4_3:51565230-51565249 Msa0646030:intron 35.0%
CCAGAATTGAGAGGAATATT+GGG + chr4_3:51565267-51565286 Msa0646030:intron 35.0%
AATTGAGAGGAATATTGGGT+TGG + chr4_3:51565271-51565290 Msa0646030:intron 35.0%
ATTGAGAGGAATATTGGGTT+GGG + chr4_3:51565272-51565291 Msa0646030:intron 35.0%
AAATGATAAACCTGATGGGA+AGG - chr4_3:51565324-51565343 None:intergenic 35.0%
CAAATGGACAAATGGCTAAA+GGG - chr4_3:51565556-51565575 None:intergenic 35.0%
ACAAATGGACAAATGGCTAA+AGG - chr4_3:51565557-51565576 None:intergenic 35.0%
GAGGAAAAATCCTGAAACTT+GGG - chr4_3:51565743-51565762 None:intergenic 35.0%
AGAGGAAAAATCCTGAAACT+TGG - chr4_3:51565744-51565763 None:intergenic 35.0%
GGAAAAATAAGTCCCAAACT+GGG - chr4_3:51565770-51565789 None:intergenic 35.0%
!! GAGACTTATTTTTCATGACG+TGG - chr4_3:51565864-51565883 None:intergenic 35.0%
AGTCTCAAATTTGATTGTGG+GGG + chr4_3:51565878-51565897 Msa0646030:intron 35.0%
! CTTGTAACTTGTGAAACATG+AGG + chr4_3:51565906-51565925 Msa0646030:intron 35.0%
GAAATGAGGGGAATAAAATC+CGG + chr4_3:51565947-51565966 Msa0646030:intron 35.0%
! ATCCGGCTCTAGTTAAAAAT+AGG + chr4_3:51565964-51565983 Msa0646030:intron 35.0%
! TCCGGCTCTAGTTAAAAATA+GGG + chr4_3:51565965-51565984 Msa0646030:intron 35.0%
!!! TCCCTATTTTTAACTAGAGC+CGG - chr4_3:51565969-51565988 None:intergenic 35.0%
AGAGGCAGATACAAAAATAC+CGG - chr4_3:51566040-51566059 None:intergenic 35.0%
!! TTGGAGTTTGGTCTTATTGA+TGG + chr4_3:51566074-51566093 Msa0646030:CDS 35.0%
AGATTCAATACTCTGTTTCC+AGG - chr4_3:51566103-51566122 None:intergenic 35.0%
TGACAATGTGAAGTAGTTTG+GGG - chr4_3:51566331-51566350 None:intergenic 35.0%
! CTCAACTTACGTTTTCTCAC+AGG + chr4_3:51561666-51561685 Msa0646030:CDS 40.0%
AGGAAGAAGATATCGTGCAA+GGG - chr4_3:51561774-51561793 None:intergenic 40.0%
AAGGAAGAAGATATCGTGCA+AGG - chr4_3:51561775-51561794 None:intergenic 40.0%
GGCTTATCAAGTAAAACCCA+TGG + chr4_3:51562217-51562236 Msa0646030:intron 40.0%
GTACACATGATGTTGGTACA+AGG + chr4_3:51562266-51562285 Msa0646030:CDS 40.0%
AATCACAGAAAGTCAGGCTT+CGG - chr4_3:51562407-51562426 None:intergenic 40.0%
CAGTACAATCACAGAAAGTC+AGG - chr4_3:51562413-51562432 None:intergenic 40.0%
CTGACTTTCTGTGATTGTAC+TGG + chr4_3:51562411-51562430 Msa0646030:intron 40.0%
AACATTCAGCTTATAGACCG+TGG + chr4_3:51562499-51562518 Msa0646030:intron 40.0%
ATTCTAAATACGCCATGCCA+CGG - chr4_3:51562519-51562538 None:intergenic 40.0%
!!! GGGGTTTTAACTCATTTCAG+AGG - chr4_3:51562802-51562821 None:intergenic 40.0%
! TTAAAAGAGTGCAGAGACTG+GGG - chr4_3:51562821-51562840 None:intergenic 40.0%
! CTTAAAAGAGTGCAGAGACT+GGG - chr4_3:51562822-51562841 None:intergenic 40.0%
! ACTTAAAAGAGTGCAGAGAC+TGG - chr4_3:51562823-51562842 None:intergenic 40.0%
!! ATGATAGCTGGTGTTATTGG+CGG - chr4_3:51562923-51562942 None:intergenic 40.0%
!! GTCATGATAGCTGGTGTTAT+TGG - chr4_3:51562926-51562945 None:intergenic 40.0%
TTTGTGTGTGTGTGTAAGGT+AGG - chr4_3:51563281-51563300 None:intergenic 40.0%
TCAACCACAATGTGGATATG+GGG + chr4_3:51563529-51563548 Msa0646030:CDS 40.0%
!! AGACGATACTGATTTGGTGT+AGG + chr4_3:51563633-51563652 Msa0646030:intron 40.0%
!! TACTGATTTGGTGTAGGAAG+AGG + chr4_3:51563639-51563658 Msa0646030:intron 40.0%
GAAGTTTGTAAACTGTAGGG+AGG - chr4_3:51563788-51563807 None:intergenic 40.0%
AGGTTATGTCCAATGCAACT+TGG - chr4_3:51563861-51563880 None:intergenic 40.0%
AGGAAGAAAGACTAACATGG+CGG - chr4_3:51564248-51564267 None:intergenic 40.0%
CAGAGGAAGAAAGACTAACA+TGG - chr4_3:51564251-51564270 None:intergenic 40.0%
GTCCCAACACTATACATTCA+AGG - chr4_3:51564396-51564415 None:intergenic 40.0%
TCCAGGTAAAGAATTCAACG+AGG - chr4_3:51564443-51564462 None:intergenic 40.0%
CTATTAACAAGATTGGGGAC+CGG - chr4_3:51564548-51564567 None:intergenic 40.0%
! CATTTGGGCTTTTAGCAAGA+TGG - chr4_3:51564610-51564629 None:intergenic 40.0%
CTCCTCACACAAAGTCATTT+GGG - chr4_3:51564625-51564644 None:intergenic 40.0%
ACTCCTCACACAAAGTCATT+TGG - chr4_3:51564626-51564645 None:intergenic 40.0%
CAATAGTCCATTCTGTTGGA+TGG - chr4_3:51564675-51564694 None:intergenic 40.0%
!! CATCCAACAGAATGGACTAT+TGG + chr4_3:51564673-51564692 Msa0646030:intron 40.0%
TCTTCATGCTCAAGTTACCA+TGG + chr4_3:51564774-51564793 Msa0646030:intron 40.0%
TCTGTACTCCAAAAAGAAGG+GGG - chr4_3:51564906-51564925 None:intergenic 40.0%
AAGATGTTCAGTGCTTTCAC+TGG + chr4_3:51564934-51564953 Msa0646030:CDS 40.0%
GCCAGAATTGAGAGGAATAT+TGG + chr4_3:51565266-51565285 Msa0646030:intron 40.0%
CCCAATATTCCTCTCAATTC+TGG - chr4_3:51565270-51565289 None:intergenic 40.0%
!! GAATATTGGGTTGGGTAAGT+CGG + chr4_3:51565280-51565299 Msa0646030:intron 40.0%
!! AATATTGGGTTGGGTAAGTC+GGG + chr4_3:51565281-51565300 Msa0646030:intron 40.0%
! TTTTTCCTCTCAACCCAGTT+TGG + chr4_3:51565754-51565773 Msa0646030:intron 40.0%
! TTTTCCTCTCAACCCAGTTT+GGG + chr4_3:51565755-51565774 Msa0646030:intron 40.0%
GGGAAAAATAAGTCCCAAAC+TGG - chr4_3:51565771-51565790 None:intergenic 40.0%
! TCCTAATTTGCACCAGAAGT+GGG - chr4_3:51565799-51565818 None:intergenic 40.0%
! TTCCTAATTTGCACCAGAAG+TGG - chr4_3:51565800-51565819 None:intergenic 40.0%
GAGGCAGATACAAAAATACC+GGG - chr4_3:51566039-51566058 None:intergenic 40.0%
TATCTGCCTCTTCTCATTTC+AGG + chr4_3:51566049-51566068 Msa0646030:intron 40.0%
!! TCATTTCAGGCTTTGGAGTT+TGG + chr4_3:51566062-51566081 Msa0646030:intron 40.0%
! GAAGTAGTTTGGGGTATAAC+TGG - chr4_3:51566322-51566341 None:intergenic 40.0%
GATTCTTCTGTGAGAAGCGA+TGG - chr4_3:51561642-51561661 None:intergenic 45.0%
CGGTGTAATTGAAGCCAAGA+CGG + chr4_3:51562892-51562911 Msa0646030:CDS 45.0%
GGTGTAATTGAAGCCAAGAC+GGG + chr4_3:51562893-51562912 Msa0646030:CDS 45.0%
GTGTAATTGAAGCCAAGACG+GGG + chr4_3:51562894-51562913 Msa0646030:CDS 45.0%
!! TGATAGCTGGTGTTATTGGC+GGG - chr4_3:51562922-51562941 None:intergenic 45.0%
ACAGCCAGTTAACTCACAAG+TGG + chr4_3:51563006-51563025 Msa0646030:CDS 45.0%
TGAGCCACTTGTGAGTTAAC+TGG - chr4_3:51563013-51563032 None:intergenic 45.0%
TATATCGCAGCTTGTGACTC+TGG + chr4_3:51563039-51563058 Msa0646030:CDS 45.0%
TGTGTGTGTAAGGTAGGATG+GGG - chr4_3:51563275-51563294 None:intergenic 45.0%
GTGTGTGTGTAAGGTAGGAT+GGG - chr4_3:51563276-51563295 None:intergenic 45.0%
TGTGTGTGTGTAAGGTAGGA+TGG - chr4_3:51563277-51563296 None:intergenic 45.0%
CTTACCCCATATCCACATTG+TGG - chr4_3:51563536-51563555 None:intergenic 45.0%
GGAAGAAAGACTAACATGGC+GGG - chr4_3:51564247-51564266 None:intergenic 45.0%
GCCTCGTTGAATTCTTTACC+TGG + chr4_3:51564439-51564458 Msa0646030:intron 45.0%
AGCCCAAATGACTTTGTGTG+AGG + chr4_3:51564620-51564639 Msa0646030:intron 45.0%
TCTGTTGGATGGCTCATCAA+TGG - chr4_3:51564664-51564683 None:intergenic 45.0%
TGATGAGCCATCCAACAGAA+TGG + chr4_3:51564665-51564684 Msa0646030:intron 45.0%
TAACTAAGTAGCAGCTGCCA+TGG - chr4_3:51564794-51564813 None:intergenic 45.0%
AGGGGGAAGAAGAGGAAAAT+AGG - chr4_3:51564889-51564908 None:intergenic 45.0%
CAAAAAGAAGGGGGAAGAAG+AGG - chr4_3:51564897-51564916 None:intergenic 45.0%
! CTCTTCTTCCCCCTTCTTTT+TGG + chr4_3:51564895-51564914 Msa0646030:intron 45.0%
CACTGGACAGACATTAGAGA+AGG + chr4_3:51564951-51564970 Msa0646030:CDS 45.0%
!! ATATTGGGTTGGGTAAGTCG+GGG + chr4_3:51565282-51565301 Msa0646030:intron 45.0%
! GTCTGGCTTAAATGCACTTC+TGG + chr4_3:51565656-51565675 Msa0646030:intron 45.0%
! GGATTTTCGTCCCAAGTTTC+AGG + chr4_3:51565730-51565749 Msa0646030:intron 45.0%
! TTTTCCCAACAACCCACTTC+TGG + chr4_3:51565784-51565803 Msa0646030:intron 45.0%
ACCCACTTCTGGTGCAAATT+AGG + chr4_3:51565795-51565814 Msa0646030:intron 45.0%
CCAAAGCCTGAAATGAGAAG+AGG - chr4_3:51566058-51566077 None:intergenic 45.0%
CCTCTTCTCATTTCAGGCTT+TGG + chr4_3:51566055-51566074 Msa0646030:intron 45.0%
!! TGGTCTTATTGATGGTGTCC+TGG + chr4_3:51566082-51566101 Msa0646030:CDS 45.0%
CAAGAAAGAGCCTGCTAAAG+TGG + chr4_3:51566365-51566384 Msa0646030:three_prime_UTR 45.0%
! ATTAACTGCGCCACTTTAGC+AGG - chr4_3:51566378-51566397 None:intergenic 45.0%
TCGCGTGAAGCTCCAAAACA+AGG - chr4_3:51561557-51561576 None:intergenic 50.0%
TGAGAAGCGATGGTGAAGGT+GGG - chr4_3:51561632-51561651 None:intergenic 50.0%
TCTGTGAGAAGCGATGGTGA+AGG - chr4_3:51561636-51561655 None:intergenic 50.0%
TCTTCCTTGCAAAGCCCCTA+TGG + chr4_3:51561787-51561806 Msa0646030:CDS 50.0%
ACTACCATAGGGGCTTTGCA+AGG - chr4_3:51561794-51561813 None:intergenic 50.0%
TCAGCTTATAGACCGTGGCA+TGG + chr4_3:51562504-51562523 Msa0646030:intron 50.0%
ACACCAGCTATCATGACTCC+TGG + chr4_3:51562929-51562948 Msa0646030:CDS 50.0%
CCGAATAAGTGCTTCCACCA+GGG - chr4_3:51563202-51563221 None:intergenic 50.0%
!! CCCTGGTGGAAGCACTTATT+CGG + chr4_3:51563199-51563218 Msa0646030:CDS 50.0%
ACCGAATAAGTGCTTCCACC+AGG - chr4_3:51563203-51563222 None:intergenic 50.0%
GTGGCCACCAAATGCTTTCA+AGG - chr4_3:51563378-51563397 None:intergenic 50.0%
CAAGGAACACTTCTCCTTGC+CGG + chr4_3:51563455-51563474 Msa0646030:CDS 50.0%
GCTGATGTGCCAAGTTGCAT+TGG + chr4_3:51563849-51563868 Msa0646030:intron 50.0%
!! AGTTGAATTTTAGCGCGGGC+AGG + chr4_3:51564569-51564588 Msa0646030:intron 50.0%
CTTTGTGTGAGGAGTTGTCC+TGG + chr4_3:51564631-51564650 Msa0646030:intron 50.0%
! AGGTGCAAGAGTACACAGAG+AGG + chr4_3:51564971-51564990 Msa0646030:CDS 50.0%
! GGTGCAAGAGTACACAGAGA+GGG + chr4_3:51564972-51564991 Msa0646030:CDS 50.0%
CTGATGGGAAGGAACCTAGA+GGG - chr4_3:51565313-51565332 None:intergenic 50.0%
! AAGTCCCAAACTGGGTTGAG+AGG - chr4_3:51565762-51565781 None:intergenic 50.0%
!! TGCACCAGAAGTGGGTTGTT+GGG - chr4_3:51565791-51565810 None:intergenic 50.0%
!! TTGCACCAGAAGTGGGTTGT+TGG - chr4_3:51565792-51565811 None:intergenic 50.0%
ATGGTGAAGGTGGGAGTTGC+AGG - chr4_3:51561623-51561642 None:intergenic 55.0%
GTGAGAAGCGATGGTGAAGG+TGG - chr4_3:51561633-51561652 None:intergenic 55.0%
CCTCCAGGAGTCATGATAGC+TGG - chr4_3:51562935-51562954 None:intergenic 55.0%
CCAGCTATCATGACTCCTGG+AGG + chr4_3:51562932-51562951 Msa0646030:CDS 55.0%
GAGAGATCAAGAGCTCCTCC+AGG - chr4_3:51562950-51562969 None:intergenic 55.0%
TTCGGAGTAGCTGCAAGCCA+AGG + chr4_3:51563437-51563456 Msa0646030:CDS 55.0%
!! CGGCAAGGAGAAGTGTTCCT+TGG - chr4_3:51563457-51563476 None:intergenic 55.0%
GAACACTTCTCCTTGCCGGT+GGG + chr4_3:51563459-51563478 Msa0646030:CDS 55.0%
AACACTTCTCCTTGCCGGTG+GGG + chr4_3:51563460-51563479 Msa0646030:CDS 55.0%
CTGACTGCAGGGTCATGTTG+AGG + chr4_3:51564188-51564207 Msa0646030:intron 55.0%
GGGGGTAAGCCAGAATTGAG+AGG + chr4_3:51565258-51565277 Msa0646030:intron 55.0%
CCTGATGGGAAGGAACCTAG+AGG - chr4_3:51565314-51565333 None:intergenic 55.0%
CCTCTAGGTTCCTTCCCATC+AGG + chr4_3:51565311-51565330 Msa0646030:intron 55.0%
!! TATTGGCGGGTTCCCCGTCT+TGG - chr4_3:51562909-51562928 None:intergenic 60.0%
GGAACACTTCTCCTTGCCGG+TGG + chr4_3:51563458-51563477 Msa0646030:CDS 60.0%
TTGGAGAGTTGGGGGGTCGA+TGG + chr4_3:51565237-51565256 Msa0646030:intron 60.0%
TGGAGAGTTGGGGGGTCGAT+GGG + chr4_3:51565238-51565257 Msa0646030:intron 60.0%
TCTCCTTGCCGGTGGGGAGA+AGG + chr4_3:51563466-51563485 Msa0646030:CDS 65.0%
CTCCTTGCCGGTGGGGAGAA+GGG + chr4_3:51563467-51563486 Msa0646030:CDS 65.0%
TTCCCTTCTCCCCACCGGCA+AGG - chr4_3:51563472-51563491 None:intergenic 65.0%
GCGCATTCCCTTCTCCCCAC+CGG - chr4_3:51563477-51563496 None:intergenic 65.0%
GGAGAGTTGGGGGGTCGATG+GGG + chr4_3:51565239-51565258 Msa0646030:intron 65.0%
GAGAGTTGGGGGGTCGATGG+GGG + chr4_3:51565240-51565259 Msa0646030:intron 65.0%
GGGTTGGGTAAGTCGGGGCA+AGG + chr4_3:51565287-51565306 Msa0646030:intron 65.0%
AAGTCGGGGCAAGGCCCTCT+AGG + chr4_3:51565296-51565315 Msa0646030:intron 65.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 51561445 51566423 51561445 ID=Msa0646030;Name=Msa0646030
chr4_3 mRNA 51561445 51566423 51561445 ID=Msa0646030-mRNA-1;Parent=Msa0646030;Name=Msa0646030-mRNA-1;_AED=0.08;_eAED=0.08;_QI=151|1|1|1|0.77|0.7|10|278|274
chr4_3 exon 51561445 51561687 51561445 ID=Msa0646030-mRNA-1:exon:12530;Parent=Msa0646030-mRNA-1
chr4_3 exon 51561768 51561826 51561768 ID=Msa0646030-mRNA-1:exon:12531;Parent=Msa0646030-mRNA-1
chr4_3 exon 51562218 51562287 51562218 ID=Msa0646030-mRNA-1:exon:12532;Parent=Msa0646030-mRNA-1
chr4_3 exon 51562889 51563090 51562889 ID=Msa0646030-mRNA-1:exon:12533;Parent=Msa0646030-mRNA-1
chr4_3 exon 51563185 51563250 51563185 ID=Msa0646030-mRNA-1:exon:12534;Parent=Msa0646030-mRNA-1
chr4_3 exon 51563410 51563550 51563410 ID=Msa0646030-mRNA-1:exon:12535;Parent=Msa0646030-mRNA-1
chr4_3 exon 51564198 51564251 51564198 ID=Msa0646030-mRNA-1:exon:12536;Parent=Msa0646030-mRNA-1
chr4_3 exon 51564925 51565017 51564925 ID=Msa0646030-mRNA-1:exon:12537;Parent=Msa0646030-mRNA-1
chr4_3 exon 51566071 51566276 51566071 ID=Msa0646030-mRNA-1:exon:12538;Parent=Msa0646030-mRNA-1
chr4_3 exon 51566304 51566423 51566304 ID=Msa0646030-mRNA-1:exon:12539;Parent=Msa0646030-mRNA-1
chr4_3 five_prime_UTR 51561445 51561595 51561445 ID=Msa0646030-mRNA-1:five_prime_utr;Parent=Msa0646030-mRNA-1
chr4_3 CDS 51561596 51561687 51561596 ID=Msa0646030-mRNA-1:cds;Parent=Msa0646030-mRNA-1
chr4_3 CDS 51561768 51561826 51561768 ID=Msa0646030-mRNA-1:cds;Parent=Msa0646030-mRNA-1
chr4_3 CDS 51562218 51562287 51562218 ID=Msa0646030-mRNA-1:cds;Parent=Msa0646030-mRNA-1
chr4_3 CDS 51562889 51563090 51562889 ID=Msa0646030-mRNA-1:cds;Parent=Msa0646030-mRNA-1
chr4_3 CDS 51563185 51563250 51563185 ID=Msa0646030-mRNA-1:cds;Parent=Msa0646030-mRNA-1
chr4_3 CDS 51563410 51563550 51563410 ID=Msa0646030-mRNA-1:cds;Parent=Msa0646030-mRNA-1
chr4_3 CDS 51564198 51564251 51564198 ID=Msa0646030-mRNA-1:cds;Parent=Msa0646030-mRNA-1
chr4_3 CDS 51564925 51565017 51564925 ID=Msa0646030-mRNA-1:cds;Parent=Msa0646030-mRNA-1
chr4_3 CDS 51566071 51566118 51566071 ID=Msa0646030-mRNA-1:cds;Parent=Msa0646030-mRNA-1
chr4_3 three_prime_UTR 51566119 51566276 51566119 ID=Msa0646030-mRNA-1:three_prime_utr;Parent=Msa0646030-mRNA-1
chr4_3 three_prime_UTR 51566304 51566423 51566304 ID=Msa0646030-mRNA-1:three_prime_utr;Parent=Msa0646030-mRNA-1
Gene Sequence

>Msa0646030

ATGGTATCTCAAGCGCTATCAGTTCCTGCAACTCCCACCTTCACCATCGCTTCTCACAGAAGAATCCCTTCTCAACTTACGTTTTCTCACAGAAACCCTTGCACGATATCTTCTTCCTTGCAAAGCCCCTATGGTAGTTCTTCTCAAATCGGCTTATCAAGTAAAACCCATGGTTTTCGCTTAAAACTTGATGAGAAAAGTACACATGATGTTGGTACAAGTTACGGTGTAATTGAAGCCAAGACGGGGAACCCGCCAATAACACCAGCTATCATGACTCCTGGAGGAGCTCTTGATCTCTCATCTGTTTTGTTCAGGAATCGTATAATATTCATAGGACAGCCAGTTAACTCACAAGTGGCTCAGAGAGTTATATCGCAGCTTGTGACTCTGGCTACTATTGATCCAGATGCAGATATAATGATGTATATAAATTGCCCTGGTGGAAGCACTTATTCGGTGCTTGCAATTTATGATTGCATGTCTTGGATAAAGCCAAAGGTTGGTACAGTATGTTTCGGAGTAGCTGCAAGCCAAGGAACACTTCTCCTTGCCGGTGGGGAGAAGGGAATGCGCTATTCAATGCCAAATGCTCGCATTATGATGAATCAACCACAATGTGGATATGGGGGTCATGTTGAGGATGTGAGACGTCTAGTGAATGAAGCTGTTCAATCCCGCCATAAAATGGAGAAGATGTTCAGTGCTTTCACTGGACAGACATTAGAGAAGGTGCAAGAGTACACAGAGAGGGACAGTTTTCTTTCTGTTTCTGAGGCTTTGGAGTTTGGTCTTATTGATGGTGTCCTGGAAACAGAGTATTGA

Protein sequence

>Msa0646030

MVSQALSVPATPTFTIASHRRIPSQLTFSHRNPCTISSSLQSPYGSSSQIGLSSKTHGFRLKLDEKSTHDVGTSYGVIEAKTGNPPITPAIMTPGGALDLSSVLFRNRIIFIGQPVNSQVAQRVISQLVTLATIDPDADIMMYINCPGGSTYSVLAIYDCMSWIKPKVGTVCFGVAASQGTLLLAGGEKGMRYSMPNARIMMNQPQCGYGGHVEDVRRLVNEAVQSRHKMEKMFSAFTGQTLEKVQEYTERDSFLSVSEALEFGLIDGVLETEY*