AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0225080


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0225080 MtrunA17_Chr2g0331361 90.110 273 19 1 73 337 1 273 2.13e-178 494
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0225080 AT1G51080.1 47.964 221 104 4 119 331 63 280 7.15e-55 181

Find 101 sgRNAs with CRISPR-Local

Find 223 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGACCTTCTCGGCACTTCTA+AGG 0.214375 2_1:+75090959 Msa0225080:CDS
TTTGCTCTTAATGTGTTAAA+TGG 0.235237 2_1:+75090816 Msa0225080:CDS
TCATGTTTACTTTATGTTTC+GGG 0.243260 2_1:+75090527 Msa0225080:CDS
GTTAGGTTGGGTGTTGGTAT+TGG 0.265352 2_1:-75091024 None:intergenic
ATCATGTTTACTTTATGTTT+CGG 0.295381 2_1:+75090526 Msa0225080:CDS
GCCCAGTCGTTCCACTGTTC+AGG 0.305450 2_1:+75088760 Msa0225080:CDS
CGTTCCACTGTTCAGGTTGT+TGG 0.305864 2_1:+75088767 Msa0225080:CDS
TAGCAGGTGGGTGGTTAGGT+TGG 0.367914 2_1:-75091037 None:intergenic
AAAGTTGATTTCGACCTTCT+CGG 0.376013 2_1:+75090948 Msa0225080:CDS
CGAGACAGAGTAATAGATTT+CGG 0.391075 2_1:+75090642 Msa0225080:CDS
TAGGATGCTGCCATGGTTGA+TGG 0.394720 2_1:-75091270 None:intergenic
TCAATGCGGTCTTTGTAGAT+TGG 0.399152 2_1:-75090786 None:intergenic
CTTAAGAGCACGCGAGTTTG+AGG 0.411946 2_1:+75090728 Msa0225080:CDS
CGAAATCTATTACTCTGTCT+CGG 0.412583 2_1:-75090641 None:intergenic
CTAGTAGCAGGTGGGTGGTT+AGG 0.415512 2_1:-75091041 None:intergenic
CAATCCATTCCCCGGACGTC+AGG 0.418797 2_1:+75091232 Msa0225080:CDS
TCTGCTGCTGCTAGATCCAT+TGG 0.419249 2_1:+75090852 Msa0225080:CDS
CTTTGTAGATTGGGTCTAGA+AGG 0.419945 2_1:-75090776 None:intergenic
CAATGCGGTCTTTGTAGATT+GGG 0.420162 2_1:-75090785 None:intergenic
TTTAAAGTTGAGTTTAGCTT+AGG 0.423436 2_1:-75091289 None:intergenic
AGCAGGTGGGTGGTTAGGTT+GGG 0.433268 2_1:-75091036 None:intergenic
CAGGAGATAAGCAAGAGATT+TGG 0.434593 2_1:+75090894 Msa0225080:CDS
TTCAGAAAGAGAAATTAAAC+TGG 0.440028 2_1:+75090617 Msa0225080:CDS
TGGGTGGTTAGGTTGGGTGT+TGG 0.441793 2_1:-75091030 None:intergenic
AGAAGAAGGAGGAGTGGCCT+TGG 0.448906 2_1:-75088803 None:intergenic
CACTTGAGTGGCGGAGAAGA+AGG 0.453433 2_1:-75088817 None:intergenic
AGGAAGGAGAAAACCGTTGT+TGG 0.463848 2_1:-75088851 None:intergenic
CTCAGAATCTGCCGCTCCAA+TGG 0.465779 2_1:-75090868 None:intergenic
ACGGAGAAGAGCCTGACGTC+CGG 0.467710 2_1:-75091243 None:intergenic
AAATCAAAAGCAGCGTTATG+TGG 0.472830 2_1:+75090566 Msa0225080:CDS
GAAAACCGTTGTTGGCTTGA+CGG 0.475146 2_1:-75088843 None:intergenic
AACCTGAACAGTGGAACGAC+TGG 0.476170 2_1:-75088762 None:intergenic
CCACCTGCTACTAGTATCAT+TGG 0.480418 2_1:+75091050 Msa0225080:CDS
GATAAGCAAGAGATTTGGTT+GGG 0.481364 2_1:+75090899 Msa0225080:CDS
AGAGCCTGACGTCCGGGGAA+TGG 0.482518 2_1:-75091236 None:intergenic
AAATACAAGGGGAAGATGTT+GGG 0.485271 2_1:+75090666 Msa0225080:CDS
CGGAGAAGAGCCTGACGTCC+GGG 0.490784 2_1:-75091242 None:intergenic
GACCTTCTCGGCACTTCTAA+GGG 0.491235 2_1:+75090960 Msa0225080:CDS
AAAATACAAGGGGAAGATGT+TGG 0.491381 2_1:+75090665 Msa0225080:CDS
CTGACGTCCGGGGAATGGAT+TGG 0.498352 2_1:-75091231 None:intergenic
AGCGGCAGATTCTGAGCTGC+AGG 0.508668 2_1:+75090875 Msa0225080:CDS
CCACATTGTTGTCCTTCTGT+TGG 0.509399 2_1:-75091163 None:intergenic
GAAATCTATTACTCTGTCTC+GGG 0.511728 2_1:-75090640 None:intergenic
GTGGAACGACTGGGCGGAGA+AGG 0.513943 2_1:-75088752 None:intergenic
TGCCATGGTTGATGGCCTTA+CGG 0.514572 2_1:-75091262 None:intergenic
TCGCTGAAATTGACAAGTCT+CGG 0.520757 2_1:-75090993 None:intergenic
TTCCGTCGAGCTACCTCAAG+TGG 0.521226 2_1:+75090694 Msa0225080:CDS
AGCACGCGAGTTTGAGGAGT+GGG 0.522721 2_1:+75090734 Msa0225080:CDS
ACAGTAGTAGTAGGACTAAG+AGG 0.528829 2_1:+75091087 Msa0225080:CDS
TCCACTGTTCAGGTTGTTGG+TGG 0.530058 2_1:+75088770 Msa0225080:CDS
AATAGATTTCGGAAAATACA+AGG 0.531546 2_1:+75090653 Msa0225080:CDS
GCCATTGCCAATCCATTCCC+CGG 0.538546 2_1:+75091224 Msa0225080:CDS
ACGGTAGTAACAGTAGTAGT+AGG 0.539912 2_1:+75091078 Msa0225080:CDS
TTGGTGGTGCAGAGTTGCCA+AGG 0.549204 2_1:+75088786 Msa0225080:CDS
CTCCCTTAGAAGTGCCGAGA+AGG 0.555291 2_1:-75090962 None:intergenic
ACCTGAACAGTGGAACGACT+GGG 0.562572 2_1:-75088761 None:intergenic
AATCAAAAGCAGCGTTATGT+GGG 0.565427 2_1:+75090567 Msa0225080:CDS
TGCTCCAACCAACTTTGTCA+AGG 0.565623 2_1:-75090926 None:intergenic
ACGTCAGGCTCTTCTCCGTA+AGG 0.566162 2_1:+75091247 Msa0225080:CDS
AAATGAAGCGCACCAACAGA+AGG 0.567882 2_1:+75091151 Msa0225080:CDS
AGATAAGCAAGAGATTTGGT+TGG 0.569741 2_1:+75090898 Msa0225080:CDS
TGATAGAAAAGAATAAAGAA+AGG 0.571066 2_1:-75091326 None:intergenic
TAGTAGTAGGACTAAGAGGA+TGG 0.572795 2_1:+75091091 Msa0225080:CDS
TTGTTTGCTTGCAGTTGCAA+AGG 0.573981 2_1:+75090457 Msa0225080:intron
TGGCGGAGAAGAAGGAGGAG+TGG 0.579227 2_1:-75088809 None:intergenic
CTACCAATGATACTAGTAGC+AGG 0.580274 2_1:-75091053 None:intergenic
TCCGGGGAATGGATTGGCAA+TGG 0.584712 2_1:-75091225 None:intergenic
GCTTGACGGCGACACTTGAG+TGG 0.585353 2_1:-75088829 None:intergenic
TGGGATAACCTTGACAAAGT+TGG 0.586673 2_1:+75090918 Msa0225080:CDS
ATAACCTTGACAAAGTTGGT+TGG 0.591237 2_1:+75090922 Msa0225080:CDS
TTCTCGGCACTTCTAAGGGA+GGG 0.601983 2_1:+75090964 Msa0225080:CDS
TTTAGCTTAGGATGCTGCCA+TGG 0.602732 2_1:-75091277 None:intergenic
CTCCGTAAGGCCATCAACCA+TGG 0.607049 2_1:+75091260 Msa0225080:CDS
GAAAAGAATAAAGAAAGGCA+TGG 0.608100 2_1:-75091321 None:intergenic
TCTACAAAGACCGCATTGAG+TGG 0.608441 2_1:+75090790 Msa0225080:CDS
ACTAGTATCATTGGTAGCAA+CGG 0.610173 2_1:+75091059 Msa0225080:CDS
TCCGTCGAGCTACCTCAAGT+GGG 0.610493 2_1:+75090695 Msa0225080:CDS
ACGCTGTGACTGTGAGTGTG+TGG 0.616052 2_1:-75088724 None:intergenic
CCAATGATACTAGTAGCAGG+TGG 0.627861 2_1:-75091050 None:intergenic
CGAGACAGAAAATGAGATCG+AGG 0.635307 2_1:+75091123 Msa0225080:CDS
TGATACTAGTAGCAGGTGGG+TGG 0.637051 2_1:-75091046 None:intergenic
ATAGATTTCGGAAAATACAA+GGG 0.637119 2_1:+75090654 Msa0225080:CDS
CTACAAAGACCGCATTGAGT+GGG 0.639133 2_1:+75090791 Msa0225080:CDS
GGAGAAGAGCCTGACGTCCG+GGG 0.642345 2_1:-75091241 None:intergenic
TTGAGTGGCGGAGAAGAAGG+AGG 0.642533 2_1:-75088814 None:intergenic
ATGAGAGACTCAAATGTGCA+AGG 0.645302 2_1:+75088047 Msa0225080:CDS
CTTCTCGGCACTTCTAAGGG+AGG 0.649267 2_1:+75090963 Msa0225080:CDS
GTGACTGTGAGTGTGTGGAG+TGG 0.653778 2_1:-75088719 None:intergenic
TAGATTTCGGAAAATACAAG+GGG 0.656833 2_1:+75090655 Msa0225080:CDS
ACTTGAGGTAGCTCGACGGA+AGG 0.664751 2_1:-75090692 None:intergenic
CAATGATACTAGTAGCAGGT+GGG 0.664856 2_1:-75091049 None:intergenic
TGCTGCTAGATCCATTGGAG+CGG 0.676565 2_1:+75090857 Msa0225080:CDS
ACCCACTTGAGGTAGCTCGA+CGG 0.680643 2_1:-75090696 None:intergenic
TGACGGCGACACTTGAGTGG+CGG 0.690479 2_1:-75088826 None:intergenic
TGTCGCCGTCAAGCCAACAA+CGG 0.695144 2_1:+75088838 Msa0225080:CDS
ACCACCAACAACCTGAACAG+TGG 0.702343 2_1:-75088771 None:intergenic
CCAACAGAAGGACAACAATG+TGG 0.706083 2_1:+75091163 Msa0225080:CDS
GAGCAAACTCCCACTCAATG+CGG 0.708509 2_1:-75090800 None:intergenic
GAGCACGCGAGTTTGAGGAG+TGG 0.717265 2_1:+75090733 Msa0225080:CDS
GTGGATTGTGCGATAATGTG+AGG 0.733787 2_1:-75088700 None:intergenic
TGAACAGTGGAACGACTGGG+CGG 0.739181 2_1:-75088758 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATCCATTATTATTTAT+TGG + chr2_1:75088132-75088151 Msa0225080:intron 10.0%
!! TATAATCCAATAAATAATAA+TGG - chr2_1:75088141-75088160 None:intergenic 10.0%
!! TAAAAAAAAATTAACTAGTA+GGG - chr2_1:75088232-75088251 None:intergenic 10.0%
!!! TAAAGAATAATTACTTATTT+TGG + chr2_1:75088576-75088595 Msa0225080:intron 10.0%
!!! TTTTTTCAATTAAATTTACA+GGG - chr2_1:75089216-75089235 None:intergenic 10.0%
!!! TTTTTTTCAATTAAATTTAC+AGG - chr2_1:75089217-75089236 None:intergenic 10.0%
!! TTTAAAAAATACTCAAATAT+TGG + chr2_1:75090217-75090236 Msa0225080:intron 10.0%
!! TCATTCAAATAAATAAATAA+AGG - chr2_1:75090400-75090419 None:intergenic 10.0%
!! AAAAAAAGAGATATATATAT+TGG - chr2_1:75091380-75091399 None:intergenic 10.0%
!! CTAAAAAAAAATTAACTAGT+AGG - chr2_1:75088233-75088252 None:intergenic 15.0%
!!! TTTGTTACTTTTTATTTTGT+GGG + chr2_1:75088442-75088461 Msa0225080:intron 15.0%
!! AAAAAAAATGCAGAAATAAT+TGG - chr2_1:75089002-75089021 None:intergenic 15.0%
!! AAATTAAAATTTGACAAAAC+TGG - chr2_1:75089580-75089599 None:intergenic 15.0%
!!! AGTTTTGTCAAATTTTAATT+TGG + chr2_1:75089579-75089598 Msa0225080:intron 15.0%
!! TAAATAAATCATGTTTGATT+TGG - chr2_1:75090088-75090107 None:intergenic 15.0%
!! ATCAAACATGATTTATTTAT+TGG + chr2_1:75090089-75090108 Msa0225080:intron 15.0%
!!! TTTTTAAATATATCCAAACA+AGG - chr2_1:75090205-75090224 None:intergenic 15.0%
!! AATATATGAATTTATCTGTT+TGG - chr2_1:75090316-75090335 None:intergenic 15.0%
!! TCAAATAAATAAATAAAGGT+AGG - chr2_1:75090396-75090415 None:intergenic 15.0%
!! ATATTGGAAAAATTGAAAAT+TGG - chr2_1:75091364-75091383 None:intergenic 15.0%
!! TTGATTAATACTAAATCACA+AGG - chr2_1:75088383-75088402 None:intergenic 20.0%
!!! CTTTGTTACTTTTTATTTTG+TGG + chr2_1:75088441-75088460 Msa0225080:intron 20.0%
!! TGAAACCAAATTAAAAGATT+GGG - chr2_1:75088677-75088696 None:intergenic 20.0%
!! TTTAGCCTCTTAAAAAAAAA+TGG - chr2_1:75089670-75089689 None:intergenic 20.0%
!! ATCATGTTTACTTTATGTTT+CGG + chr2_1:75090526-75090545 Msa0225080:CDS 20.0%
!! TGATAGAAAAGAATAAAGAA+AGG - chr2_1:75091329-75091348 None:intergenic 20.0%
!!! GGATATTTTACTGATTGATT+GGG - chr2_1:75088120-75088139 None:intergenic 25.0%
!!! TGGATATTTTACTGATTGAT+TGG - chr2_1:75088121-75088140 None:intergenic 25.0%
! GTGATATATGTTACTAAAGT+TGG - chr2_1:75088422-75088441 None:intergenic 25.0%
!!! TACTTATTTTGGTATGCTTA+AGG + chr2_1:75088587-75088606 Msa0225080:intron 25.0%
! ATTGAAAATTAAAGTGACTC+CGG - chr2_1:75088618-75088637 None:intergenic 25.0%
!!! AGTCACTTTAATTTTCAATG+TGG + chr2_1:75088619-75088638 Msa0225080:intron 25.0%
! CAAATTAAAAGATTGGGTTT+GGG - chr2_1:75088671-75088690 None:intergenic 25.0%
! GTGAAACCAAATTAAAAGAT+TGG - chr2_1:75088678-75088697 None:intergenic 25.0%
!! TGTTCTGTTTGTTGAAAAAA+TGG - chr2_1:75089405-75089424 None:intergenic 25.0%
!! AGTCTTAACATTTTCATACT+AGG + chr2_1:75089427-75089446 Msa0225080:intron 25.0%
!! GTCTTAACATTTTCATACTA+GGG + chr2_1:75089428-75089447 Msa0225080:intron 25.0%
!! CTATATTTTACTTCGAAAGT+AGG - chr2_1:75089514-75089533 None:intergenic 25.0%
! TTTCGAAGTAAAATATAGCA+CGG + chr2_1:75089516-75089535 Msa0225080:intron 25.0%
! TCTTAAAAAAAAATGGTGTG+TGG - chr2_1:75089663-75089682 None:intergenic 25.0%
!!! ACACACCATTTTTTTTTAAG+AGG + chr2_1:75089662-75089681 Msa0225080:intron 25.0%
! ACTTAATGCGTGAATATAAA+TGG - chr2_1:75089705-75089724 None:intergenic 25.0%
! ATGAGCAAATGTTTATAAGT+AGG + chr2_1:75089783-75089802 Msa0225080:intron 25.0%
! TGAGCAAATGTTTATAAGTA+GGG + chr2_1:75089784-75089803 Msa0225080:intron 25.0%
! AAACAAAATCCAAATTAGTC+AGG - chr2_1:75089838-75089857 None:intergenic 25.0%
! TTAAATATATCCAAACAAGG+AGG - chr2_1:75090202-75090221 None:intergenic 25.0%
! TCATGTTTACTTTATGTTTC+GGG + chr2_1:75090527-75090546 Msa0225080:CDS 25.0%
! TTCAGAAAGAGAAATTAAAC+TGG + chr2_1:75090617-75090636 Msa0225080:CDS 25.0%
! AATAGATTTCGGAAAATACA+AGG + chr2_1:75090653-75090672 Msa0225080:CDS 25.0%
! ATAGATTTCGGAAAATACAA+GGG + chr2_1:75090654-75090673 Msa0225080:CDS 25.0%
! TTTGCTCTTAATGTGTTAAA+TGG + chr2_1:75090816-75090835 Msa0225080:CDS 25.0%
!! TTTAAAGTTGAGTTTAGCTT+AGG - chr2_1:75091292-75091311 None:intergenic 25.0%
GTGTATGAATGTAGTATGTA+TGG + chr2_1:75088073-75088092 Msa0225080:intron 30.0%
TAGTATGTATGGTTTCTAAG+AGG + chr2_1:75088084-75088103 Msa0225080:intron 30.0%
TGAGTGAGTTCTCAATTAAT+TGG - chr2_1:75088209-75088228 None:intergenic 30.0%
AAACAAAGTTTAGACAAGTC+AGG + chr2_1:75088256-75088275 Msa0225080:intron 30.0%
CCAAATTAAAAGATTGGGTT+TGG - chr2_1:75088672-75088691 None:intergenic 30.0%
!! CCAAACCCAATCTTTTAATT+TGG + chr2_1:75088669-75088688 Msa0225080:intron 30.0%
AGCTATAAACTACTTGAATC+AGG - chr2_1:75089169-75089188 None:intergenic 30.0%
! ATTGTTAGTTTATCCGCTAT+CGG + chr2_1:75089336-75089355 Msa0225080:intron 30.0%
! ATAGACTAATTTGTCAACAG+TGG + chr2_1:75089481-75089500 Msa0225080:intron 30.0%
! TGCTATTAGATTTTCGCTAT+TGG + chr2_1:75089636-75089655 Msa0225080:intron 30.0%
AATGCGTGAATATAAATGGT+GGG - chr2_1:75089701-75089720 None:intergenic 30.0%
TAATGCGTGAATATAAATGG+TGG - chr2_1:75089702-75089721 None:intergenic 30.0%
TAAGAGTCACACATTAGAAA+TGG + chr2_1:75089754-75089773 Msa0225080:intron 30.0%
!! TGTTTTTGCCAAAACTGAAT+TGG + chr2_1:75089853-75089872 Msa0225080:intron 30.0%
!!! GATCCCTCACAAATTTTTTA+CGG - chr2_1:75089880-75089899 None:intergenic 30.0%
AAATTTGTGAGGGATCAAAA+TGG + chr2_1:75089884-75089903 Msa0225080:intron 30.0%
ATCACCAACATGTATTTCAT+TGG + chr2_1:75089945-75089964 Msa0225080:intron 30.0%
TCACCAACATGTATTTCATT+GGG + chr2_1:75089946-75089965 Msa0225080:intron 30.0%
TAACCCAATGAAATACATGT+TGG - chr2_1:75089952-75089971 None:intergenic 30.0%
!! CATCAATGTGAACCATTTTT+CGG + chr2_1:75090000-75090019 Msa0225080:intron 30.0%
GGCACTAACATATTCATAAA+AGG - chr2_1:75090349-75090368 None:intergenic 30.0%
! TTCAATCTTTGGAGAATCTA+AGG - chr2_1:75090370-75090389 None:intergenic 30.0%
! AAGGTAGGATTTTCAATCTT+TGG - chr2_1:75090381-75090400 None:intergenic 30.0%
TAGATTTCGGAAAATACAAG+GGG + chr2_1:75090655-75090674 Msa0225080:CDS 30.0%
GAAAAGAATAAAGAAAGGCA+TGG - chr2_1:75091324-75091343 None:intergenic 30.0%
!!! TCTCTTTTTTTTCTCTGTCT+TGG + chr2_1:75091389-75091408 Msa0225080:three_prime_UTR 30.0%
TGAACCAAACCGATCATTAT+TGG + chr2_1:75088168-75088187 Msa0225080:intron 35.0%
! CAAACCGATCATTATTGGTT+CGG + chr2_1:75088173-75088192 Msa0225080:intron 35.0%
!! AAACCGATCATTATTGGTTC+GGG + chr2_1:75088174-75088193 Msa0225080:intron 35.0%
!! TTAGACAAGTCAGGTTTTAG+AGG + chr2_1:75088265-75088284 Msa0225080:intron 35.0%
! CGGCATAAGAACGTTTTTAA+TGG - chr2_1:75088338-75088357 None:intergenic 35.0%
GTAGCGTAAATTTGACACAT+TGG - chr2_1:75088948-75088967 None:intergenic 35.0%
!!! TGCTTTTTAGAGTCAAGAGT+CGG + chr2_1:75089026-75089045 Msa0225080:intron 35.0%
!!! GGTCCTTCACAATTTTTTAG+CGG + chr2_1:75089047-75089066 Msa0225080:intron 35.0%
ATGCCGCTAAAAAATTGTGA+AGG - chr2_1:75089053-75089072 None:intergenic 35.0%
!!! CACAATTTTTTAGCGGCATA+AGG + chr2_1:75089054-75089073 Msa0225080:intron 35.0%
ACGAGCTTAGCTTATATTAG+TGG + chr2_1:75089133-75089152 Msa0225080:intron 35.0%
AAATGGCAGGTAACTTATAG+TGG - chr2_1:75089388-75089407 None:intergenic 35.0%
! CTGTTTGTTGAAAAAATGGC+AGG - chr2_1:75089401-75089420 None:intergenic 35.0%
ATAACCAGCTTATGATACGA+GGG - chr2_1:75089814-75089833 None:intergenic 35.0%
! TTTACGGTCCAATTCAGTTT+TGG - chr2_1:75089864-75089883 None:intergenic 35.0%
TGGACCGTAAAAAATTTGTG+AGG + chr2_1:75089873-75089892 Msa0225080:intron 35.0%
GGACCGTAAAAAATTTGTGA+GGG + chr2_1:75089874-75089893 Msa0225080:intron 35.0%
!! TTCATTGGGTTAGTTTGCTT+CGG + chr2_1:75089960-75089979 Msa0225080:intron 35.0%
! CATTGATGGAAATTTTGTGC+AGG - chr2_1:75089988-75090007 None:intergenic 35.0%
CGAAAAATGGTTCACATTGA+TGG - chr2_1:75090002-75090021 None:intergenic 35.0%
! TTCGGTTTTCAACCGAAAAA+TGG - chr2_1:75090015-75090034 None:intergenic 35.0%
!! TGTAACAAGTCGATTTGGTT+CGG - chr2_1:75090033-75090052 None:intergenic 35.0%
ATGAGCAGAATTGAATGAAG+TGG - chr2_1:75090273-75090292 None:intergenic 35.0%
CAAAACAAAGAGACTAGAGT+TGG - chr2_1:75090440-75090459 None:intergenic 35.0%
AAATCAAAAGCAGCGTTATG+TGG + chr2_1:75090566-75090585 Msa0225080:CDS 35.0%
AATCAAAAGCAGCGTTATGT+GGG + chr2_1:75090567-75090586 Msa0225080:CDS 35.0%
GAAATCTATTACTCTGTCTC+GGG - chr2_1:75090643-75090662 None:intergenic 35.0%
CGAAATCTATTACTCTGTCT+CGG - chr2_1:75090644-75090663 None:intergenic 35.0%
CGAGACAGAGTAATAGATTT+CGG + chr2_1:75090642-75090661 Msa0225080:CDS 35.0%
AAAATACAAGGGGAAGATGT+TGG + chr2_1:75090665-75090684 Msa0225080:CDS 35.0%
AAATACAAGGGGAAGATGTT+GGG + chr2_1:75090666-75090685 Msa0225080:CDS 35.0%
!!! AGTTTTTTGAAACCCACTTG+AGG - chr2_1:75090710-75090729 None:intergenic 35.0%
! AGATAAGCAAGAGATTTGGT+TGG + chr2_1:75090898-75090917 Msa0225080:CDS 35.0%
! GATAAGCAAGAGATTTGGTT+GGG + chr2_1:75090899-75090918 Msa0225080:CDS 35.0%
! ATAACCTTGACAAAGTTGGT+TGG + chr2_1:75090922-75090941 Msa0225080:CDS 35.0%
! AAAGTTGATTTCGACCTTCT+CGG + chr2_1:75090948-75090967 Msa0225080:CDS 35.0%
! ACTAGTATCATTGGTAGCAA+CGG + chr2_1:75091059-75091078 Msa0225080:CDS 35.0%
ATGAGAGACTCAAATGTGCA+AGG + chr2_1:75088047-75088066 Msa0225080:CDS 40.0%
CGAACCAATAATGATCGGTT+TGG - chr2_1:75088175-75088194 None:intergenic 40.0%
TCACCCGAACCAATAATGAT+CGG - chr2_1:75088180-75088199 None:intergenic 40.0%
GCAAGTTCAACTCACAATGT+CGG - chr2_1:75088358-75088377 None:intergenic 40.0%
TAGAATAGAGTCTACCTCTG+AGG - chr2_1:75088874-75088893 None:intergenic 40.0%
CGGACAATGTTCATAAGTGA+AGG + chr2_1:75089536-75089555 Msa0225080:intron 40.0%
!! CGTGAATATAAATGGTGGGT+GGG - chr2_1:75089697-75089716 None:intergenic 40.0%
TCTAATAGTGCTTAGCGTGA+AGG + chr2_1:75089724-75089743 Msa0225080:intron 40.0%
CATAACCAGCTTATGATACG+AGG - chr2_1:75089815-75089834 None:intergenic 40.0%
CTGGTTATGCCTGACTAATT+TGG + chr2_1:75089826-75089845 Msa0225080:intron 40.0%
CGTAGTGTAACAAGTCGATT+TGG - chr2_1:75090038-75090057 None:intergenic 40.0%
! TGTAGACAACTAGCCTATGT+TGG + chr2_1:75090141-75090160 Msa0225080:intron 40.0%
TCATTCCAGCAATCCAACAT+AGG - chr2_1:75090157-75090176 None:intergenic 40.0%
TGATATGATGCCTCCTTGTT+TGG + chr2_1:75090189-75090208 Msa0225080:intron 40.0%
CAAAGAGACTAGAGTTGGAT+GGG - chr2_1:75090435-75090454 None:intergenic 40.0%
ACAAAGAGACTAGAGTTGGA+TGG - chr2_1:75090436-75090455 None:intergenic 40.0%
TTGTTTGCTTGCAGTTGCAA+AGG + chr2_1:75090457-75090476 Msa0225080:intron 40.0%
CTTTGTAGATTGGGTCTAGA+AGG - chr2_1:75090779-75090798 None:intergenic 40.0%
CAATGCGGTCTTTGTAGATT+GGG - chr2_1:75090788-75090807 None:intergenic 40.0%
TCAATGCGGTCTTTGTAGAT+TGG - chr2_1:75090789-75090808 None:intergenic 40.0%
CAGGAGATAAGCAAGAGATT+TGG + chr2_1:75090894-75090913 Msa0225080:CDS 40.0%
TGGGATAACCTTGACAAAGT+TGG + chr2_1:75090918-75090937 Msa0225080:CDS 40.0%
TCGCTGAAATTGACAAGTCT+CGG - chr2_1:75090996-75091015 None:intergenic 40.0%
CAATGATACTAGTAGCAGGT+GGG - chr2_1:75091052-75091071 None:intergenic 40.0%
CTACCAATGATACTAGTAGC+AGG - chr2_1:75091056-75091075 None:intergenic 40.0%
ACGGTAGTAACAGTAGTAGT+AGG + chr2_1:75091078-75091097 Msa0225080:CDS 40.0%
ACAGTAGTAGTAGGACTAAG+AGG + chr2_1:75091087-75091106 Msa0225080:CDS 40.0%
TAGTAGTAGGACTAAGAGGA+TGG + chr2_1:75091091-75091110 Msa0225080:CDS 40.0%
!! TATAGCCCTTAAAGAGTGCC+CGG - chr2_1:75088485-75088504 None:intergenic 45.0%
!! TGGTATGCTTAAGGAGTGTC+CGG + chr2_1:75088596-75088615 Msa0225080:intron 45.0%
! GTGGATTGTGCGATAATGTG+AGG - chr2_1:75088703-75088722 None:intergenic 45.0%
!! GAAAACCGTTGTTGGCTTGA+CGG - chr2_1:75088846-75088865 None:intergenic 45.0%
AGGAAGGAGAAAACCGTTGT+TGG - chr2_1:75088854-75088873 None:intergenic 45.0%
! ATAGAGTCTACCTCTGAGGA+AGG - chr2_1:75088870-75088889 None:intergenic 45.0%
AGCTCGTTTATAGCCGATAG+CGG - chr2_1:75089352-75089371 None:intergenic 45.0%
! GCGTGAATATAAATGGTGGG+TGG - chr2_1:75089698-75089717 None:intergenic 45.0%
ACAACCCTCGTATCATAAGC+TGG + chr2_1:75089807-75089826 Msa0225080:intron 45.0%
! ACTAGCCTATGTTGGATTGC+TGG + chr2_1:75090149-75090168 Msa0225080:intron 45.0%
TCTACAAAGACCGCATTGAG+TGG + chr2_1:75090790-75090809 Msa0225080:CDS 45.0%
CTACAAAGACCGCATTGAGT+GGG + chr2_1:75090791-75090810 Msa0225080:CDS 45.0%
TGCTCCAACCAACTTTGTCA+AGG - chr2_1:75090929-75090948 None:intergenic 45.0%
!! GTTAGGTTGGGTGTTGGTAT+TGG - chr2_1:75091027-75091046 None:intergenic 45.0%
CCAATGATACTAGTAGCAGG+TGG - chr2_1:75091053-75091072 None:intergenic 45.0%
CCACCTGCTACTAGTATCAT+TGG + chr2_1:75091050-75091069 Msa0225080:CDS 45.0%
CGAGACAGAAAATGAGATCG+AGG + chr2_1:75091123-75091142 Msa0225080:CDS 45.0%
AAATGAAGCGCACCAACAGA+AGG + chr2_1:75091151-75091170 Msa0225080:CDS 45.0%
CCACATTGTTGTCCTTCTGT+TGG - chr2_1:75091166-75091185 None:intergenic 45.0%
CCAACAGAAGGACAACAATG+TGG + chr2_1:75091163-75091182 Msa0225080:CDS 45.0%
! TTTAGCTTAGGATGCTGCCA+TGG - chr2_1:75091280-75091299 None:intergenic 45.0%
GGAAATGTAAACGAGTGCCC+CGG + chr2_1:75088463-75088482 Msa0225080:intron 50.0%
GAAATGTAAACGAGTGCCCC+GGG + chr2_1:75088464-75088483 Msa0225080:intron 50.0%
!! ATAGCCCTTAAAGAGTGCCC+GGG - chr2_1:75088484-75088503 None:intergenic 50.0%
ACCTGAACAGTGGAACGACT+GGG - chr2_1:75088764-75088783 None:intergenic 50.0%
AACCTGAACAGTGGAACGAC+TGG - chr2_1:75088765-75088784 None:intergenic 50.0%
!! CGTTCCACTGTTCAGGTTGT+TGG + chr2_1:75088767-75088786 Msa0225080:CDS 50.0%
!! TCCACTGTTCAGGTTGTTGG+TGG + chr2_1:75088770-75088789 Msa0225080:CDS 50.0%
ACCACCAACAACCTGAACAG+TGG - chr2_1:75088774-75088793 None:intergenic 50.0%
! ACGGTTTTCTCCTTCCTCAG+AGG + chr2_1:75088857-75088876 Msa0225080:intron 50.0%
! CTTAAGAGCACGCGAGTTTG+AGG + chr2_1:75090728-75090747 Msa0225080:CDS 50.0%
GAGCAAACTCCCACTCAATG+CGG - chr2_1:75090803-75090822 None:intergenic 50.0%
TCTGCTGCTGCTAGATCCAT+TGG + chr2_1:75090852-75090871 Msa0225080:CDS 50.0%
TGCTGCTAGATCCATTGGAG+CGG + chr2_1:75090857-75090876 Msa0225080:CDS 50.0%
GACCTTCTCGGCACTTCTAA+GGG + chr2_1:75090960-75090979 Msa0225080:CDS 50.0%
! TTCTCGGCACTTCTAAGGGA+GGG + chr2_1:75090964-75090983 Msa0225080:CDS 50.0%
TGATACTAGTAGCAGGTGGG+TGG - chr2_1:75091049-75091068 None:intergenic 50.0%
!! TGCCATGGTTGATGGCCTTA+CGG - chr2_1:75091265-75091284 None:intergenic 50.0%
TAGGATGCTGCCATGGTTGA+TGG - chr2_1:75091273-75091292 None:intergenic 50.0%
!! TAGCCCTTAAAGAGTGCCCG+GGG - chr2_1:75088483-75088502 None:intergenic 55.0%
GTGACTGTGAGTGTGTGGAG+TGG - chr2_1:75088722-75088741 None:intergenic 55.0%
ACGCTGTGACTGTGAGTGTG+TGG - chr2_1:75088727-75088746 None:intergenic 55.0%
TGAACAGTGGAACGACTGGG+CGG - chr2_1:75088761-75088780 None:intergenic 55.0%
!! TTGGTGGTGCAGAGTTGCCA+AGG + chr2_1:75088786-75088805 Msa0225080:CDS 55.0%
AGAAGAAGGAGGAGTGGCCT+TGG - chr2_1:75088806-75088825 None:intergenic 55.0%
! TTGAGTGGCGGAGAAGAAGG+AGG - chr2_1:75088817-75088836 None:intergenic 55.0%
! CACTTGAGTGGCGGAGAAGA+AGG - chr2_1:75088820-75088839 None:intergenic 55.0%
TGTCGCCGTCAAGCCAACAA+CGG + chr2_1:75088838-75088857 Msa0225080:CDS 55.0%
ACTTGAGGTAGCTCGACGGA+AGG - chr2_1:75090695-75090714 None:intergenic 55.0%
TTCCGTCGAGCTACCTCAAG+TGG + chr2_1:75090694-75090713 Msa0225080:CDS 55.0%
TCCGTCGAGCTACCTCAAGT+GGG + chr2_1:75090695-75090714 Msa0225080:CDS 55.0%
ACCCACTTGAGGTAGCTCGA+CGG - chr2_1:75090699-75090718 None:intergenic 55.0%
AGCACGCGAGTTTGAGGAGT+GGG + chr2_1:75090734-75090753 Msa0225080:CDS 55.0%
CTCAGAATCTGCCGCTCCAA+TGG - chr2_1:75090871-75090890 None:intergenic 55.0%
CGACCTTCTCGGCACTTCTA+AGG + chr2_1:75090959-75090978 Msa0225080:CDS 55.0%
!! CTCCCTTAGAAGTGCCGAGA+AGG - chr2_1:75090965-75090984 None:intergenic 55.0%
! CTTCTCGGCACTTCTAAGGG+AGG + chr2_1:75090963-75090982 Msa0225080:CDS 55.0%
!! TGGGTGGTTAGGTTGGGTGT+TGG - chr2_1:75091033-75091052 None:intergenic 55.0%
AGCAGGTGGGTGGTTAGGTT+GGG - chr2_1:75091039-75091058 None:intergenic 55.0%
TAGCAGGTGGGTGGTTAGGT+TGG - chr2_1:75091040-75091059 None:intergenic 55.0%
CTAGTAGCAGGTGGGTGGTT+AGG - chr2_1:75091044-75091063 None:intergenic 55.0%
GCCATTGCCAATCCATTCCC+CGG + chr2_1:75091224-75091243 Msa0225080:CDS 55.0%
!! TCCGGGGAATGGATTGGCAA+TGG - chr2_1:75091228-75091247 None:intergenic 55.0%
ACGTCAGGCTCTTCTCCGTA+AGG + chr2_1:75091247-75091266 Msa0225080:CDS 55.0%
CTCCGTAAGGCCATCAACCA+TGG + chr2_1:75091260-75091279 Msa0225080:CDS 55.0%
AGTGCCCCGGGCACTCTTTA+AGG + chr2_1:75088476-75088495 Msa0225080:intron 60.0%
GTGCCCCGGGCACTCTTTAA+GGG + chr2_1:75088477-75088496 Msa0225080:intron 60.0%
GCCCAGTCGTTCCACTGTTC+AGG + chr2_1:75088760-75088779 Msa0225080:CDS 60.0%
TGGCGGAGAAGAAGGAGGAG+TGG - chr2_1:75088812-75088831 None:intergenic 60.0%
TGACGGCGACACTTGAGTGG+CGG - chr2_1:75088829-75088848 None:intergenic 60.0%
GCTTGACGGCGACACTTGAG+TGG - chr2_1:75088832-75088851 None:intergenic 60.0%
GAGCACGCGAGTTTGAGGAG+TGG + chr2_1:75090733-75090752 Msa0225080:CDS 60.0%
AGCGGCAGATTCTGAGCTGC+AGG + chr2_1:75090875-75090894 Msa0225080:CDS 60.0%
CTGACGTCCGGGGAATGGAT+TGG - chr2_1:75091234-75091253 None:intergenic 60.0%
CAATCCATTCCCCGGACGTC+AGG + chr2_1:75091232-75091251 Msa0225080:CDS 60.0%
ACGGAGAAGAGCCTGACGTC+CGG - chr2_1:75091246-75091265 None:intergenic 60.0%
GTGGAACGACTGGGCGGAGA+AGG - chr2_1:75088755-75088774 None:intergenic 65.0%
AGAGCCTGACGTCCGGGGAA+TGG - chr2_1:75091239-75091258 None:intergenic 65.0%
GGAGAAGAGCCTGACGTCCG+GGG - chr2_1:75091244-75091263 None:intergenic 65.0%
CGGAGAAGAGCCTGACGTCC+GGG - chr2_1:75091245-75091264 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 75088043 75091443 75088043 ID=Msa0225080;Name=Msa0225080
chr2_1 mRNA 75088043 75091443 75088043 ID=Msa0225080-mRNA-1;Parent=Msa0225080;Name=Msa0225080-mRNA-1;_AED=0.05;_eAED=0.18;_QI=0|0|0.33|0.66|1|1|3|145|337
chr2_1 exon 75088043 75088068 75088043 ID=Msa0225080-mRNA-1:exon:22456;Parent=Msa0225080-mRNA-1
chr2_1 exon 75088700 75088859 75088700 ID=Msa0225080-mRNA-1:exon:22457;Parent=Msa0225080-mRNA-1
chr2_1 exon 75090471 75091443 75090471 ID=Msa0225080-mRNA-1:exon:22458;Parent=Msa0225080-mRNA-1
chr2_1 CDS 75088043 75088068 75088043 ID=Msa0225080-mRNA-1:cds;Parent=Msa0225080-mRNA-1
chr2_1 CDS 75088700 75088859 75088700 ID=Msa0225080-mRNA-1:cds;Parent=Msa0225080-mRNA-1
chr2_1 CDS 75090471 75091298 75090471 ID=Msa0225080-mRNA-1:cds;Parent=Msa0225080-mRNA-1
chr2_1 three_prime_UTR 75091299 75091443 75091299 ID=Msa0225080-mRNA-1:three_prime_utr;Parent=Msa0225080-mRNA-1
Gene Sequence

>Msa0225080

ATGAATGAGAGACTCAAATGTGCAAGCCTCACATTATCGCACAATCCACTCCACACACTCACAGTCACAGCGTCATCTCCTTCTCCGCCCAGTCGTTCCACTGTTCAGGTTGTTGGTGGTGCAGAGTTGCCAAGGCCACTCCTCCTTCTTCTCCGCCACTCAAGTGTCGCCGTCAAGCCAACAACGTTGCAAAGGCGTTCATATCATCTTCATCTCATGCATCTGTTATTGCAGCAGCAGCATCATGTTTACTTTATGTTTCGGGACACTTGTTGTATAACAAATCAAAAGCAGCGTTATGTGGGAGTGACAGTAACATCGTTGAGACGCAATTCAGAAAGAGAAATTAAACTGGCCCGAGACAGAGTAATAGATTTCGGAAAATACAAGGGGAAGATGTTGGGAAGCCTTCCGTCGAGCTACCTCAAGTGGGTTTCAAAAAACTTAAGAGCACGCGAGTTTGAGGAGTGGGCAATTCTTGCAGATCAAGTCCTTCTAGACCCAATCTACAAAGACCGCATTGAGTGGGAGTTTGCTCTTAATGTGTTAAATGGCAACAACATTTCTTCTGCTGCTGCTAGATCCATTGGAGCGGCAGATTCTGAGCTGCAGGAGATAAGCAAGAGATTTGGTTGGGATAACCTTGACAAAGTTGGTTGGAGCAAAGTTGATTTCGACCTTCTCGGCACTTCTAAGGGAGGGAGAATTCCGAGACTTGTCAATTTCAGCGACAGTGACACCAATACCAACACCCAACCTAACCACCCACCTGCTACTAGTATCATTGGTAGCAACGGTAGTAACAGTAGTAGTAGGACTAAGAGGATGGAGAGAAGAGCGAGACAGAAAATGAGATCGAGGACGACAAATGAAGCGCACCAACAGAAGGACAACAATGTGGTTGATATTGAAGAAGTTGAAGATGATAACATTAATATAGCCATTGCCAATCCATTCCCCGGACGTCAGGCTCTTCTCCGTAAGGCCATCAACCATGGCAGCATCCTAAGCTAA

Protein sequence

>Msa0225080

MNERLKCASLTLSHNPLHTLTVTASSPSPPSRSTVQVVGGAELPRPLLLLLRHSSVAVKPTTLQRRSYHLHLMHLLLQQQHHVYFMFRDTCCITNQKQRYVGVTVTSLRRNSEREIKLARDRVIDFGKYKGKMLGSLPSSYLKWVSKNLRAREFEEWAILADQVLLDPIYKDRIEWEFALNVLNGNNISSAAARSIGAADSELQEISKRFGWDNLDKVGWSKVDFDLLGTSKGGRIPRLVNFSDSDTNTNTQPNHPPATSIIGSNGSNSSSRTKRMERRARQKMRSRTTNEAHQQKDNNVVDIEEVEDDNINIAIANPFPGRQALLRKAINHGSILS*