AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1240820


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1240820 MtrunA17_Chr8g0353131 94.792 192 10 0 1 192 1 192 2.57e-135 376
Msa1240820 MtrunA17_Chr3g0084221 75.789 190 46 0 3 192 2 191 1.21e-107 306
Msa1240820 MtrunA17_Chr3g0084161 72.105 190 53 0 3 192 2 191 3.54e-105 300
Msa1240820 MtrunA17_Chr3g0084201 73.158 190 50 1 3 192 2 190 3.76e-102 292
Msa1240820 MtrunA17_Chr3g0084191 62.827 191 68 1 3 190 2 192 1.31e-84 258
Msa1240820 MtrunA17_Chr3g0082411 60.317 63 20 1 51 108 1 63 1.39e-19 79.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1240820 AT3G27890.1 74.866 187 47 0 5 191 10 196 2.33e-101 291

Find 52 sgRNAs with CRISPR-Local

Find 218 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAATATCAGTATATGATTT+TGG 0.169387 8_2:-23677596 Msa1240820:three_prime_UTR
TAGTGCATTAGAATAATTTA+AGG 0.190097 8_2:+23677628 None:intergenic
ATCAAAGTGGCAGCTCTTTC+AGG 0.210399 8_2:-23679021 Msa1240820:CDS
ATATATCAAGCACATGATTT+AGG 0.257096 8_2:+23677473 None:intergenic
TTTGACCAATGTGAATAATT+TGG 0.258338 8_2:+23677496 None:intergenic
CTTTGCAGGCATTTACTCTA+AGG 0.267903 8_2:-23677670 Msa1240820:CDS
CCATCATCATTGAACTTTGC+AGG 0.314182 8_2:+23677743 None:intergenic
CGTCTAGACCACCAAATGTT+TGG 0.318819 8_2:-23677907 Msa1240820:CDS
CATTGAAGAATGCAATTGAT+TGG 0.367565 8_2:-23677931 Msa1240820:CDS
GTCTAGACCACCAAATGTTT+GGG 0.381599 8_2:-23677906 Msa1240820:CDS
GCTTTGCCAGCCCAAACATT+TGG 0.411118 8_2:+23677896 None:intergenic
CAATCAATTGCATTCTTCAA+TGG 0.420729 8_2:+23677932 None:intergenic
GCATTTACTCTAAGGCTTCA+AGG 0.430875 8_2:-23677662 Msa1240820:CDS
ATTGAAGAATGCAATTGATT+GGG 0.454057 8_2:-23677930 Msa1240820:CDS
TTGCCAGCCCAAACATTTGG+TGG 0.456284 8_2:+23677899 None:intergenic
ATAAGCACTGGAGGAGACTT+TGG 0.465806 8_2:-23677863 Msa1240820:CDS
CATAATCTTCTATAAAGAAC+AGG 0.468305 8_2:-23679090 Msa1240820:five_prime_UTR
AAGACGAACCGGCACGGATA+AGG 0.468476 8_2:+23678968 None:intergenic
GCACTGGAGGAGACTTTGGC+GGG 0.469020 8_2:-23677859 Msa1240820:CDS
TTCAAGATCAGTGTTGTACA+TGG 0.495069 8_2:+23678797 None:intergenic
CAACACTGATCTTGAAAACA+AGG 0.510617 8_2:-23678790 Msa1240820:CDS
CCTGCAAAGTTCAATGATGA+TGG 0.528301 8_2:-23677743 Msa1240820:CDS
CGGCACGGATAAGGCCTGAA+TGG 0.533476 8_2:+23678977 None:intergenic
GCAGCTGCAATCATAAGCAC+TGG 0.542454 8_2:-23677875 Msa1240820:CDS
TTTGATTGATGAAGGGGCTA+AGG 0.544643 8_2:-23677717 Msa1240820:CDS
GCAGCAATTGAGTTGAGTAA+AGG 0.545033 8_2:-23678867 Msa1240820:intron
TTGAGTAAAGGAGCAATTGA+AGG 0.546127 8_2:-23678855 Msa1240820:CDS
CATTCAGGCCTTATCCGTGC+CGG 0.552216 8_2:-23678976 Msa1240820:intron
AGACCACCAAATGTTTGGGC+TGG 0.554510 8_2:-23677902 Msa1240820:CDS
CAAAAGAAGACGAACCGGCA+CGG 0.560038 8_2:+23678962 None:intergenic
GATGGCGATTTGATTGATGA+AGG 0.564435 8_2:-23677725 Msa1240820:CDS
AGAACATAATCTCTAAGTCA+TGG 0.566549 8_2:-23679055 Msa1240820:exon
GAGTATAACTACTCTGTCAC+AGG 0.571097 8_2:-23678693 Msa1240820:intron
TGAGACCAAATTATTCACAT+TGG 0.575526 8_2:-23677501 Msa1240820:three_prime_UTR
CACTATCATCTACGCCAAGT+TGG 0.575730 8_2:-23677827 Msa1240820:CDS
CGAAAAGCTTCAACAAGAGG+TGG 0.582016 8_2:+23678759 None:intergenic
GATCAATATAAATTCCAACT+TGG 0.584290 8_2:+23677813 None:intergenic
AGCACTGGAGGAGACTTTGG+CGG 0.584571 8_2:-23677860 Msa1240820:CDS
TATTATTCAAAATGTATGTG+AGG 0.591253 8_2:+23677538 None:intergenic
TGGCGAAAAGCTTCAACAAG+AGG 0.594853 8_2:+23678756 None:intergenic
ATGGCGATTTGATTGATGAA+GGG 0.608092 8_2:-23677724 Msa1240820:CDS
ACTGGAGGAGACTTTGGCGG+GGG 0.627120 8_2:-23677857 Msa1240820:CDS
TCAAGATCAGTGTTGTACAT+GGG 0.627999 8_2:+23678798 None:intergenic
AATGCTCTTAGAAAGAACTC+AGG 0.630349 8_2:+23677773 None:intergenic
TCATCATTGAACTTTGCAGG+TGG 0.635212 8_2:+23677746 None:intergenic
GTGACAGAGTAGTTATACTC+AGG 0.639364 8_2:+23678696 None:intergenic
TGGCGATTTGATTGATGAAG+GGG 0.641939 8_2:-23677723 Msa1240820:CDS
CACTGGAGGAGACTTTGGCG+GGG 0.645839 8_2:-23677858 Msa1240820:CDS
GCTGCAATCATAAGCACTGG+AGG 0.650272 8_2:-23677872 Msa1240820:CDS
TATCAGCTTGAAGAATCTTG+TGG 0.652286 8_2:+23678736 None:intergenic
AACACTGATCTTGAAAACAA+GGG 0.673165 8_2:-23678789 Msa1240820:CDS
GGCAGCAGCAGTGATCAAAG+TGG 0.706403 8_2:-23679034 Msa1240820:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTGTAATTAAAAAATTGAT+AGG + chr8_2:23678472-23678491 None:intergenic 10.0%
!!! ATATATATACTATCTTTTTT+TGG - chr8_2:23679049-23679068 Msa1240820:exon 10.0%
!! TTTGTAATTAAAAAATTGAT+AGG + chr8_2:23678472-23678491 None:intergenic 10.0%
!!! ATATATATACTATCTTTTTT+TGG - chr8_2:23679049-23679068 Msa1240820:exon 10.0%
!! TATTATATAAATAGTTGCAA+AGG + chr8_2:23677984-23678003 None:intergenic 15.0%
!! TATTATATAAATAGTTGCAA+AGG + chr8_2:23677984-23678003 None:intergenic 15.0%
!! AACCCAAAAAATTACAATTA+TGG + chr8_2:23678112-23678131 None:intergenic 20.0%
!! AAAAAATTGATAGGTAGAAA+TGG + chr8_2:23678463-23678482 None:intergenic 20.0%
!! TAGTGCATTAGAATAATTTA+AGG + chr8_2:23678880-23678899 None:intergenic 20.0%
!!! CAAATATCAGTATATGATTT+TGG - chr8_2:23678909-23678928 Msa1240820:intron 20.0%
!!! GAGGAAATAATATATTTTCA+AGG + chr8_2:23678951-23678970 None:intergenic 20.0%
!! TATTATTCAAAATGTATGTG+AGG + chr8_2:23678970-23678989 None:intergenic 20.0%
!! AACCCAAAAAATTACAATTA+TGG + chr8_2:23678112-23678131 None:intergenic 20.0%
!! AAAAAATTGATAGGTAGAAA+TGG + chr8_2:23678463-23678482 None:intergenic 20.0%
!! TAGTGCATTAGAATAATTTA+AGG + chr8_2:23678880-23678899 None:intergenic 20.0%
!!! CAAATATCAGTATATGATTT+TGG - chr8_2:23678909-23678928 Msa1240820:intron 20.0%
!!! GAGGAAATAATATATTTTCA+AGG + chr8_2:23678951-23678970 None:intergenic 20.0%
!! TATTATTCAAAATGTATGTG+AGG + chr8_2:23678970-23678989 None:intergenic 20.0%
! CATAATCTTCTATAAAGAAC+AGG - chr8_2:23677415-23677434 Msa1240820:three_prime_UTR 25.0%
!! TCTTTTCTTCTTCTATTACA+AGG + chr8_2:23677892-23677911 None:intergenic 25.0%
! ATATAAATAGTTGCAAAGGT+AGG + chr8_2:23677980-23677999 None:intergenic 25.0%
! TATAATACTATGATTCCTCT+TGG - chr8_2:23677997-23678016 Msa1240820:intron 25.0%
! TTTGCAATCAAATATGTCAT+TGG + chr8_2:23678065-23678084 None:intergenic 25.0%
! ATGACATATTTGATTGCAAA+TGG - chr8_2:23678065-23678084 Msa1240820:intron 25.0%
!!! AGGCCATAATTGTAATTTTT+TGG - chr8_2:23678106-23678125 Msa1240820:intron 25.0%
!!! GGCCATAATTGTAATTTTTT+GGG - chr8_2:23678107-23678126 Msa1240820:intron 25.0%
! TTGACACTATCAACATTTAA+AGG - chr8_2:23678141-23678160 Msa1240820:intron 25.0%
! TGACACTATCAACATTTAAA+GGG - chr8_2:23678142-23678161 Msa1240820:intron 25.0%
! ATTGAAGAATGCAATTGATT+GGG - chr8_2:23678575-23678594 Msa1240820:intron 25.0%
! GATCAATATAAATTCCAACT+TGG + chr8_2:23678695-23678714 None:intergenic 25.0%
! TTTGACCAATGTGAATAATT+TGG + chr8_2:23679012-23679031 None:intergenic 25.0%
! ATATATCAAGCACATGATTT+AGG + chr8_2:23679035-23679054 None:intergenic 25.0%
!!! TTTTTGGTTTCAAGATAAAG+TGG - chr8_2:23679065-23679084 Msa1240820:five_prime_UTR 25.0%
! CATAATCTTCTATAAAGAAC+AGG - chr8_2:23677415-23677434 Msa1240820:three_prime_UTR 25.0%
!! TCTTTTCTTCTTCTATTACA+AGG + chr8_2:23677892-23677911 None:intergenic 25.0%
! ATATAAATAGTTGCAAAGGT+AGG + chr8_2:23677980-23677999 None:intergenic 25.0%
! TATAATACTATGATTCCTCT+TGG - chr8_2:23677997-23678016 Msa1240820:intron 25.0%
! TTTGCAATCAAATATGTCAT+TGG + chr8_2:23678065-23678084 None:intergenic 25.0%
! ATGACATATTTGATTGCAAA+TGG - chr8_2:23678065-23678084 Msa1240820:intron 25.0%
!!! AGGCCATAATTGTAATTTTT+TGG - chr8_2:23678106-23678125 Msa1240820:intron 25.0%
!!! GGCCATAATTGTAATTTTTT+GGG - chr8_2:23678107-23678126 Msa1240820:intron 25.0%
! TTGACACTATCAACATTTAA+AGG - chr8_2:23678141-23678160 Msa1240820:intron 25.0%
! TGACACTATCAACATTTAAA+GGG - chr8_2:23678142-23678161 Msa1240820:intron 25.0%
! ATTGAAGAATGCAATTGATT+GGG - chr8_2:23678575-23678594 Msa1240820:intron 25.0%
! GATCAATATAAATTCCAACT+TGG + chr8_2:23678695-23678714 None:intergenic 25.0%
! TTTGACCAATGTGAATAATT+TGG + chr8_2:23679012-23679031 None:intergenic 25.0%
! ATATATCAAGCACATGATTT+AGG + chr8_2:23679035-23679054 None:intergenic 25.0%
!!! TTTTTGGTTTCAAGATAAAG+TGG - chr8_2:23679065-23679084 Msa1240820:five_prime_UTR 25.0%
AGAACATAATCTCTAAGTCA+TGG - chr8_2:23677450-23677469 Msa1240820:three_prime_UTR 30.0%
! ATGGTATGAAGTTTTTCTGA+GGG + chr8_2:23677512-23677531 None:intergenic 30.0%
! AATGGTATGAAGTTTTTCTG+AGG + chr8_2:23677513-23677532 None:intergenic 30.0%
AGAAAAACTTCATACCATTC+AGG - chr8_2:23677514-23677533 Msa1240820:three_prime_UTR 30.0%
! GTTGTAGTATTGAATTTGCA+TGG - chr8_2:23677603-23677622 Msa1240820:three_prime_UTR 30.0%
AACACTGATCTTGAAAACAA+GGG - chr8_2:23677716-23677735 Msa1240820:CDS 30.0%
! CGATTTTTGTTCAAGAAGTT+CGG - chr8_2:23677939-23677958 Msa1240820:intron 30.0%
! AAATATGTCATTGGTACTGA+GGG + chr8_2:23678056-23678075 None:intergenic 30.0%
!! TATGCAATCGTTTTTGCAAT+GGG + chr8_2:23678295-23678314 None:intergenic 30.0%
!! ATATGCAATCGTTTTTGCAA+TGG + chr8_2:23678296-23678315 None:intergenic 30.0%
ATTGCAAAAACGATTGCATA+TGG - chr8_2:23678295-23678314 Msa1240820:intron 30.0%
CTATATCTCCGAATTTAGAA+GGG + chr8_2:23678397-23678416 None:intergenic 30.0%
ACTATATCTCCGAATTTAGA+AGG + chr8_2:23678398-23678417 None:intergenic 30.0%
CAATCAATTGCATTCTTCAA+TGG + chr8_2:23678576-23678595 None:intergenic 30.0%
CATTGAAGAATGCAATTGAT+TGG - chr8_2:23678574-23678593 Msa1240820:intron 30.0%
! ACAAGTTCTTTTATCTTTGC+AGG - chr8_2:23678821-23678840 Msa1240820:CDS 30.0%
TGAGACCAAATTATTCACAT+TGG - chr8_2:23679004-23679023 Msa1240820:CDS 30.0%
AGAACATAATCTCTAAGTCA+TGG - chr8_2:23677450-23677469 Msa1240820:three_prime_UTR 30.0%
! ATGGTATGAAGTTTTTCTGA+GGG + chr8_2:23677512-23677531 None:intergenic 30.0%
! AATGGTATGAAGTTTTTCTG+AGG + chr8_2:23677513-23677532 None:intergenic 30.0%
AGAAAAACTTCATACCATTC+AGG - chr8_2:23677514-23677533 Msa1240820:three_prime_UTR 30.0%
! GTTGTAGTATTGAATTTGCA+TGG - chr8_2:23677603-23677622 Msa1240820:three_prime_UTR 30.0%
AACACTGATCTTGAAAACAA+GGG - chr8_2:23677716-23677735 Msa1240820:CDS 30.0%
! CGATTTTTGTTCAAGAAGTT+CGG - chr8_2:23677939-23677958 Msa1240820:intron 30.0%
! AAATATGTCATTGGTACTGA+GGG + chr8_2:23678056-23678075 None:intergenic 30.0%
!! TATGCAATCGTTTTTGCAAT+GGG + chr8_2:23678295-23678314 None:intergenic 30.0%
!! ATATGCAATCGTTTTTGCAA+TGG + chr8_2:23678296-23678315 None:intergenic 30.0%
ATTGCAAAAACGATTGCATA+TGG - chr8_2:23678295-23678314 Msa1240820:intron 30.0%
CTATATCTCCGAATTTAGAA+GGG + chr8_2:23678397-23678416 None:intergenic 30.0%
ACTATATCTCCGAATTTAGA+AGG + chr8_2:23678398-23678417 None:intergenic 30.0%
CAATCAATTGCATTCTTCAA+TGG + chr8_2:23678576-23678595 None:intergenic 30.0%
CATTGAAGAATGCAATTGAT+TGG - chr8_2:23678574-23678593 Msa1240820:intron 30.0%
! ACAAGTTCTTTTATCTTTGC+AGG - chr8_2:23678821-23678840 Msa1240820:CDS 30.0%
TGAGACCAAATTATTCACAT+TGG - chr8_2:23679004-23679023 Msa1240820:CDS 30.0%
CAAAACAAAAGAAGACGAAC+CGG + chr8_2:23677551-23677570 None:intergenic 35.0%
TTGAGTAAAGGAGCAATTGA+AGG - chr8_2:23677650-23677669 Msa1240820:exon 35.0%
TCAAGATCAGTGTTGTACAT+GGG + chr8_2:23677710-23677729 None:intergenic 35.0%
TTCAAGATCAGTGTTGTACA+TGG + chr8_2:23677711-23677730 None:intergenic 35.0%
CAACACTGATCTTGAAAACA+AGG - chr8_2:23677715-23677734 Msa1240820:CDS 35.0%
TATCAGCTTGAAGAATCTTG+TGG + chr8_2:23677772-23677791 None:intergenic 35.0%
CAAATATGTCATTGGTACTG+AGG + chr8_2:23678057-23678076 None:intergenic 35.0%
!! TTGCAGCTTTGAAATGATCA+CGG + chr8_2:23678238-23678257 None:intergenic 35.0%
GTCAAAGTGAAGGAACTTAA+CGG - chr8_2:23678261-23678280 Msa1240820:intron 35.0%
CACTAAGTCTGTGTTTGATA+AGG + chr8_2:23678438-23678457 None:intergenic 35.0%
ACACAAAACAAAGGTGAAGA+TGG + chr8_2:23678547-23678566 None:intergenic 35.0%
TGGAGCTAAACACAAAACAA+AGG + chr8_2:23678556-23678575 None:intergenic 35.0%
AATGCTCTTAGAAAGAACTC+AGG + chr8_2:23678735-23678754 None:intergenic 35.0%
ATGGCGATTTGATTGATGAA+GGG - chr8_2:23678781-23678800 Msa1240820:CDS 35.0%
CAAAACAAAAGAAGACGAAC+CGG + chr8_2:23677551-23677570 None:intergenic 35.0%
TTGAGTAAAGGAGCAATTGA+AGG - chr8_2:23677650-23677669 Msa1240820:exon 35.0%
TCAAGATCAGTGTTGTACAT+GGG + chr8_2:23677710-23677729 None:intergenic 35.0%
TTCAAGATCAGTGTTGTACA+TGG + chr8_2:23677711-23677730 None:intergenic 35.0%
CAACACTGATCTTGAAAACA+AGG - chr8_2:23677715-23677734 Msa1240820:CDS 35.0%
TATCAGCTTGAAGAATCTTG+TGG + chr8_2:23677772-23677791 None:intergenic 35.0%
CAAATATGTCATTGGTACTG+AGG + chr8_2:23678057-23678076 None:intergenic 35.0%
!! TTGCAGCTTTGAAATGATCA+CGG + chr8_2:23678238-23678257 None:intergenic 35.0%
GTCAAAGTGAAGGAACTTAA+CGG - chr8_2:23678261-23678280 Msa1240820:intron 35.0%
CACTAAGTCTGTGTTTGATA+AGG + chr8_2:23678438-23678457 None:intergenic 35.0%
ACACAAAACAAAGGTGAAGA+TGG + chr8_2:23678547-23678566 None:intergenic 35.0%
TGGAGCTAAACACAAAACAA+AGG + chr8_2:23678556-23678575 None:intergenic 35.0%
AATGCTCTTAGAAAGAACTC+AGG + chr8_2:23678735-23678754 None:intergenic 35.0%
ATGGCGATTTGATTGATGAA+GGG - chr8_2:23678781-23678800 Msa1240820:CDS 35.0%
!! GCAGCAATTGAGTTGAGTAA+AGG - chr8_2:23677638-23677657 Msa1240820:exon 40.0%
GTGACAGAGTAGTTATACTC+AGG + chr8_2:23677812-23677831 None:intergenic 40.0%
GAGTATAACTACTCTGTCAC+AGG - chr8_2:23677812-23677831 Msa1240820:CDS 40.0%
GTTGCAAAGGTAGGAATCAT+TGG + chr8_2:23677971-23677990 None:intergenic 40.0%
ACTATGATTCCTCTTGGTCT+TGG - chr8_2:23678003-23678022 Msa1240820:intron 40.0%
!! GGATGACTCTAGTTTGTTCT+AGG - chr8_2:23678086-23678105 Msa1240820:intron 40.0%
AAACATGCGCTAAAGCTATC+AGG + chr8_2:23678175-23678194 None:intergenic 40.0%
CGCATGTTTAGTAATGCGTT+GGG - chr8_2:23678186-23678205 Msa1240820:intron 40.0%
!! GAAATGATCACGGTGTTGTT+GGG + chr8_2:23678228-23678247 None:intergenic 40.0%
!! TGAAATGATCACGGTGTTGT+TGG + chr8_2:23678229-23678248 None:intergenic 40.0%
GCTGCAAATTGTCAAAGTGA+AGG - chr8_2:23678251-23678270 Msa1240820:intron 40.0%
AAAGTGAAGGAACTTAACGG+TGG - chr8_2:23678264-23678283 Msa1240820:intron 40.0%
AAACGATTGCATATGGCTCA+CGG - chr8_2:23678302-23678321 Msa1240820:intron 40.0%
AACTGCAGCCCTTCTAAATT+CGG - chr8_2:23678386-23678405 Msa1240820:intron 40.0%
GTCTAGACCACCAAATGTTT+GGG - chr8_2:23678599-23678618 Msa1240820:intron 40.0%
TCATCATTGAACTTTGCAGG+TGG + chr8_2:23678762-23678781 None:intergenic 40.0%
CCATCATCATTGAACTTTGC+AGG + chr8_2:23678765-23678784 None:intergenic 40.0%
CCTGCAAAGTTCAATGATGA+TGG - chr8_2:23678762-23678781 Msa1240820:CDS 40.0%
GATGGCGATTTGATTGATGA+AGG - chr8_2:23678780-23678799 Msa1240820:CDS 40.0%
TGGCGATTTGATTGATGAAG+GGG - chr8_2:23678782-23678801 Msa1240820:CDS 40.0%
TTTGATTGATGAAGGGGCTA+AGG - chr8_2:23678788-23678807 Msa1240820:CDS 40.0%
CTTTGCAGGCATTTACTCTA+AGG - chr8_2:23678835-23678854 Msa1240820:CDS 40.0%
!! GCATTTACTCTAAGGCTTCA+AGG - chr8_2:23678843-23678862 Msa1240820:CDS 40.0%
!! GCAGCAATTGAGTTGAGTAA+AGG - chr8_2:23677638-23677657 Msa1240820:exon 40.0%
GTGACAGAGTAGTTATACTC+AGG + chr8_2:23677812-23677831 None:intergenic 40.0%
GAGTATAACTACTCTGTCAC+AGG - chr8_2:23677812-23677831 Msa1240820:CDS 40.0%
GTTGCAAAGGTAGGAATCAT+TGG + chr8_2:23677971-23677990 None:intergenic 40.0%
ACTATGATTCCTCTTGGTCT+TGG - chr8_2:23678003-23678022 Msa1240820:intron 40.0%
!! GGATGACTCTAGTTTGTTCT+AGG - chr8_2:23678086-23678105 Msa1240820:intron 40.0%
AAACATGCGCTAAAGCTATC+AGG + chr8_2:23678175-23678194 None:intergenic 40.0%
CGCATGTTTAGTAATGCGTT+GGG - chr8_2:23678186-23678205 Msa1240820:intron 40.0%
!! GAAATGATCACGGTGTTGTT+GGG + chr8_2:23678228-23678247 None:intergenic 40.0%
!! TGAAATGATCACGGTGTTGT+TGG + chr8_2:23678229-23678248 None:intergenic 40.0%
GCTGCAAATTGTCAAAGTGA+AGG - chr8_2:23678251-23678270 Msa1240820:intron 40.0%
AAAGTGAAGGAACTTAACGG+TGG - chr8_2:23678264-23678283 Msa1240820:intron 40.0%
AAACGATTGCATATGGCTCA+CGG - chr8_2:23678302-23678321 Msa1240820:intron 40.0%
AACTGCAGCCCTTCTAAATT+CGG - chr8_2:23678386-23678405 Msa1240820:intron 40.0%
GTCTAGACCACCAAATGTTT+GGG - chr8_2:23678599-23678618 Msa1240820:intron 40.0%
TCATCATTGAACTTTGCAGG+TGG + chr8_2:23678762-23678781 None:intergenic 40.0%
CCATCATCATTGAACTTTGC+AGG + chr8_2:23678765-23678784 None:intergenic 40.0%
CCTGCAAAGTTCAATGATGA+TGG - chr8_2:23678762-23678781 Msa1240820:CDS 40.0%
GATGGCGATTTGATTGATGA+AGG - chr8_2:23678780-23678799 Msa1240820:CDS 40.0%
TGGCGATTTGATTGATGAAG+GGG - chr8_2:23678782-23678801 Msa1240820:CDS 40.0%
TTTGATTGATGAAGGGGCTA+AGG - chr8_2:23678788-23678807 Msa1240820:CDS 40.0%
CTTTGCAGGCATTTACTCTA+AGG - chr8_2:23678835-23678854 Msa1240820:CDS 40.0%
!! GCATTTACTCTAAGGCTTCA+AGG - chr8_2:23678843-23678862 Msa1240820:CDS 40.0%
ATCAAAGTGGCAGCTCTTTC+AGG - chr8_2:23677484-23677503 Msa1240820:three_prime_UTR 45.0%
CGAAAAGCTTCAACAAGAGG+TGG + chr8_2:23677749-23677768 None:intergenic 45.0%
TGGCGAAAAGCTTCAACAAG+AGG + chr8_2:23677752-23677771 None:intergenic 45.0%
!! TGATTCCTCTTGGTCTTGGT+AGG - chr8_2:23678007-23678026 Msa1240820:intron 45.0%
ACTGAGGGATGTATCAACGT+GGG + chr8_2:23678041-23678060 None:intergenic 45.0%
TACTGAGGGATGTATCAACG+TGG + chr8_2:23678042-23678061 None:intergenic 45.0%
TGCGCTAAAGCTATCAGGTA+GGG + chr8_2:23678170-23678189 None:intergenic 45.0%
ATGCGCTAAAGCTATCAGGT+AGG + chr8_2:23678171-23678190 None:intergenic 45.0%
GCGCATGTTTAGTAATGCGT+TGG - chr8_2:23678185-23678204 Msa1240820:intron 45.0%
CGTCTAGACCACCAAATGTT+TGG - chr8_2:23678598-23678617 Msa1240820:intron 45.0%
!! ATAAGCACTGGAGGAGACTT+TGG - chr8_2:23678642-23678661 Msa1240820:intron 45.0%
CACTATCATCTACGCCAAGT+TGG - chr8_2:23678678-23678697 Msa1240820:intron 45.0%
ATCAAAGTGGCAGCTCTTTC+AGG - chr8_2:23677484-23677503 Msa1240820:three_prime_UTR 45.0%
CGAAAAGCTTCAACAAGAGG+TGG + chr8_2:23677749-23677768 None:intergenic 45.0%
TGGCGAAAAGCTTCAACAAG+AGG + chr8_2:23677752-23677771 None:intergenic 45.0%
!! TGATTCCTCTTGGTCTTGGT+AGG - chr8_2:23678007-23678026 Msa1240820:intron 45.0%
ACTGAGGGATGTATCAACGT+GGG + chr8_2:23678041-23678060 None:intergenic 45.0%
TACTGAGGGATGTATCAACG+TGG + chr8_2:23678042-23678061 None:intergenic 45.0%
TGCGCTAAAGCTATCAGGTA+GGG + chr8_2:23678170-23678189 None:intergenic 45.0%
ATGCGCTAAAGCTATCAGGT+AGG + chr8_2:23678171-23678190 None:intergenic 45.0%
GCGCATGTTTAGTAATGCGT+TGG - chr8_2:23678185-23678204 Msa1240820:intron 45.0%
CGTCTAGACCACCAAATGTT+TGG - chr8_2:23678598-23678617 Msa1240820:intron 45.0%
!! ATAAGCACTGGAGGAGACTT+TGG - chr8_2:23678642-23678661 Msa1240820:intron 45.0%
CACTATCATCTACGCCAAGT+TGG - chr8_2:23678678-23678697 Msa1240820:intron 45.0%
CAAAAGAAGACGAACCGGCA+CGG + chr8_2:23677546-23677565 None:intergenic 50.0%
CTGAGGGATGTATCAACGTG+GGG + chr8_2:23678040-23678059 None:intergenic 50.0%
AGACCACCAAATGTTTGGGC+TGG - chr8_2:23678603-23678622 Msa1240820:intron 50.0%
TTGCCAGCCCAAACATTTGG+TGG + chr8_2:23678609-23678628 None:intergenic 50.0%
GCTTTGCCAGCCCAAACATT+TGG + chr8_2:23678612-23678631 None:intergenic 50.0%
GCAGCTGCAATCATAAGCAC+TGG - chr8_2:23678630-23678649 Msa1240820:intron 50.0%
!! GCTGCAATCATAAGCACTGG+AGG - chr8_2:23678633-23678652 Msa1240820:intron 50.0%
CAAAAGAAGACGAACCGGCA+CGG + chr8_2:23677546-23677565 None:intergenic 50.0%
CTGAGGGATGTATCAACGTG+GGG + chr8_2:23678040-23678059 None:intergenic 50.0%
AGACCACCAAATGTTTGGGC+TGG - chr8_2:23678603-23678622 Msa1240820:intron 50.0%
TTGCCAGCCCAAACATTTGG+TGG + chr8_2:23678609-23678628 None:intergenic 50.0%
GCTTTGCCAGCCCAAACATT+TGG + chr8_2:23678612-23678631 None:intergenic 50.0%
GCAGCTGCAATCATAAGCAC+TGG - chr8_2:23678630-23678649 Msa1240820:intron 50.0%
!! GCTGCAATCATAAGCACTGG+AGG - chr8_2:23678633-23678652 Msa1240820:intron 50.0%
GGCAGCAGCAGTGATCAAAG+TGG - chr8_2:23677471-23677490 Msa1240820:three_prime_UTR 55.0%
! CATTCAGGCCTTATCCGTGC+CGG - chr8_2:23677529-23677548 Msa1240820:three_prime_UTR 55.0%
AAGACGAACCGGCACGGATA+AGG + chr8_2:23677540-23677559 None:intergenic 55.0%
GGTTGCCTACCAAGACCAAG+AGG + chr8_2:23678015-23678034 None:intergenic 55.0%
GGGATGTATCAACGTGGGGA+GGG + chr8_2:23678036-23678055 None:intergenic 55.0%
AGGGATGTATCAACGTGGGG+AGG + chr8_2:23678037-23678056 None:intergenic 55.0%
! AGCACTGGAGGAGACTTTGG+CGG - chr8_2:23678645-23678664 Msa1240820:intron 55.0%
GGCAGCAGCAGTGATCAAAG+TGG - chr8_2:23677471-23677490 Msa1240820:three_prime_UTR 55.0%
! CATTCAGGCCTTATCCGTGC+CGG - chr8_2:23677529-23677548 Msa1240820:three_prime_UTR 55.0%
AAGACGAACCGGCACGGATA+AGG + chr8_2:23677540-23677559 None:intergenic 55.0%
GGTTGCCTACCAAGACCAAG+AGG + chr8_2:23678015-23678034 None:intergenic 55.0%
GGGATGTATCAACGTGGGGA+GGG + chr8_2:23678036-23678055 None:intergenic 55.0%
AGGGATGTATCAACGTGGGG+AGG + chr8_2:23678037-23678056 None:intergenic 55.0%
! AGCACTGGAGGAGACTTTGG+CGG - chr8_2:23678645-23678664 Msa1240820:intron 55.0%
CGGCACGGATAAGGCCTGAA+TGG + chr8_2:23677531-23677550 None:intergenic 60.0%
GCACTGGAGGAGACTTTGGC+GGG - chr8_2:23678646-23678665 Msa1240820:intron 60.0%
CACTGGAGGAGACTTTGGCG+GGG - chr8_2:23678647-23678666 Msa1240820:intron 60.0%
ACTGGAGGAGACTTTGGCGG+GGG - chr8_2:23678648-23678667 Msa1240820:intron 60.0%
CGGCACGGATAAGGCCTGAA+TGG + chr8_2:23677531-23677550 None:intergenic 60.0%
GCACTGGAGGAGACTTTGGC+GGG - chr8_2:23678646-23678665 Msa1240820:intron 60.0%
CACTGGAGGAGACTTTGGCG+GGG - chr8_2:23678647-23678666 Msa1240820:intron 60.0%
ACTGGAGGAGACTTTGGCGG+GGG - chr8_2:23678648-23678667 Msa1240820:intron 60.0%
GAGGAGACTTTGGCGGGGGA+AGG - chr8_2:23678652-23678671 Msa1240820:intron 65.0%
GAGGAGACTTTGGCGGGGGA+AGG - chr8_2:23678652-23678671 Msa1240820:intron 65.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 23677409 23679118 23677409 ID=Msa1240820;Name=Msa1240820
chr8_2 mRNA 23677409 23679118 23677409 ID=Msa1240820-mRNA-1;Parent=Msa1240820;Name=Msa1240820-mRNA-1;_AED=0.27;_eAED=0.27;_QI=60|1|1|1|1|1|3|243|192
chr8_2 exon 23677409 23677956 23677409 ID=Msa1240820-mRNA-1:exon:8480;Parent=Msa1240820-mRNA-1
chr8_2 exon 23678694 23678885 23678694 ID=Msa1240820-mRNA-1:exon:8479;Parent=Msa1240820-mRNA-1
chr8_2 exon 23678977 23679118 23678977 ID=Msa1240820-mRNA-1:exon:8478;Parent=Msa1240820-mRNA-1
chr8_2 five_prime_UTR 23679059 23679118 23679059 ID=Msa1240820-mRNA-1:five_prime_utr;Parent=Msa1240820-mRNA-1
chr8_2 CDS 23678977 23679058 23678977 ID=Msa1240820-mRNA-1:cds;Parent=Msa1240820-mRNA-1
chr8_2 CDS 23678694 23678885 23678694 ID=Msa1240820-mRNA-1:cds;Parent=Msa1240820-mRNA-1
chr8_2 CDS 23677652 23677956 23677652 ID=Msa1240820-mRNA-1:cds;Parent=Msa1240820-mRNA-1
chr8_2 three_prime_UTR 23677409 23677651 23677409 ID=Msa1240820-mRNA-1:three_prime_utr;Parent=Msa1240820-mRNA-1
Gene Sequence

>Msa1240820

ATGGCAGCAGCAGTGATCAAAGTGGCAGCTCTTTCAGGCTCCCTCAGAAAAACTTCATACCATTCAGGCCTTATCCGTGCCGCAATTGAGTTGAGTAAAGGAGCAATTGAAGGCATTGAGATTGAGTTCATTGATATTTCAAATCTACCCATGTACAACACTGATCTTGAAAACAAGGGAACTTATCCACCTCTTGTTGAAGCTTTTCGCCACAAGATTCTTCAAGCTGATAGTGTTCTTTTTGCTTCTCCTGAGTATAACTACTCTGTCACAGCTCCATTGAAGAATGCAATTGATTGGGCGTCTAGACCACCAAATGTTTGGGCTGGCAAAGCAGCTGCAATCATAAGCACTGGAGGAGACTTTGGCGGGGGAAGGTCACACTATCATCTACGCCAAGTTGGAATTTATATTGATCTTCATTTCATCAATAAACCTGAGTTCTTTCTAAGAGCATTTGAGCCACCTGCAAAGTTCAATGATGATGGCGATTTGATTGATGAAGGGGCTAAGGATAAGTTGAAACAAGTTCTTTTATCTTTGCAGGCATTTACTCTAAGGCTTCAAGGCAAAAACTGA

Protein sequence

>Msa1240820

MAAAVIKVAALSGSLRKTSYHSGLIRAAIELSKGAIEGIEIEFIDISNLPMYNTDLENKGTYPPLVEAFRHKILQADSVLFASPEYNYSVTAPLKNAIDWASRPPNVWAGKAAAIISTGGDFGGGRSHYHLRQVGIYIDLHFINKPEFFLRAFEPPAKFNDDGDLIDEGAKDKLKQVLLSLQAFTLRLQGKN*