AlfalfaGEDB | Msa1321390

M. sativa cultivar zhongmu-4 / Msa1321390

KEGG: K19784
GO: GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009735 GO:0010033 GO:0010181 GO:0016020 GO:0016491 GO:0016645 GO:0016646 GO:0032553 GO:0036094 GO:0042221 GO:0042742 GO:0043167 GO:0043168 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048037 GO:0050662 GO:0050896 GO:0051704 GO:0051707 GO:0052873 GO:0055114 GO:0071944 GO:0097159 GO:0097367 GO:0098542 GO:1901265 GO:1901363
PFAM: PF03358.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1321390	XP_003627843.1	81.166	223	11	1	1	223	1	192	1.33e-123	358

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1321390	sp\|Q9LK88\|NQR_ARATH	62.727	220	51	1	3	222	8	196	2.38e-93	274

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1321390	B7FMX0	81.166	223	11	1	1	223	1	192	6.36e-124	358

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0005160	Msa1321390	0.810934	9.003767e-51	-8.615850e-47
Msa0008850	Msa1321390	0.822842	1.907652e-53	-8.615850e-47
Msa0039200	Msa1321390	0.814024	1.901919e-51	-8.615850e-47
Msa0047470	Msa1321390	0.815337	9.735742e-52	-8.615850e-47
Msa0051100	Msa1321390	0.826144	3.187605e-54	-8.615850e-47
Msa0057740	Msa1321390	0.815279	1.002819e-51	-8.615850e-47
Msa0086820	Msa1321390	0.812031	5.202746e-51	-8.615850e-47
Msa0103060	Msa1321390	0.818432	1.966180e-52	-8.615850e-47
Msa0133670	Msa1321390	0.811964	5.378600e-51	-8.615850e-47
Msa0133880	Msa1321390	0.809554	1.787073e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1321390	MtrunA17_Chr8g0353131	81.166	223	11	1	1	223	1	192	1.22e-127	358
Msa1321390	MtrunA17_Chr3g0084221	65.596	218	44	1	6	223	5	191	6.27e-101	290
Msa1321390	MtrunA17_Chr3g0084161	61.187	219	54	1	5	223	4	191	1.71e-96	279
Msa1321390	MtrunA17_Chr3g0084201	61.818	220	52	2	4	223	3	190	1.59e-93	271
Msa1321390	MtrunA17_Chr3g0084191	53.211	218	74	2	4	221	3	192	7.70e-77	239
Msa1321390	MtrunA17_Chr3g0082411	60.317	63	20	1	82	139	1	63	2.39e-19	79.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1321390	AT3G27890.1	62.727	220	51	1	3	222	8	196	2.42e-94	274

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Find 51 sgRNAs with CRISPR-Local

Find 207 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACACTGATCTTGAGAGCAA+TGG	0.575389	8_4:-26940332	Msa1321390:CDS
AAGACGAACCAGCACGGATA+AGG	0.470569	8_4:+26940513	None:intergenic
AATGCTCTTAGAAAGAACTC+AGG	0.630349	8_4:+26939317	None:intergenic
ACTGGAGGAGACTTTGGCGG+GGG	0.627120	8_4:-26939401	Msa1321390:CDS
AGAAAAGCTTCATACCATTC+AGG	0.420835	8_4:-26940536	Msa1321390:CDS
AGACCACCAAATGTTTGGGC+TGG	0.554510	8_4:-26939446	Msa1321390:CDS
AGCACTGGAGGAGACTTTGG+CGG	0.584571	8_4:-26939404	Msa1321390:CDS
ATAAGCACTGGAGGAGACTT+TGG	0.465806	8_4:-26939407	Msa1321390:CDS
ATCAAAGTGGCAGCTCTTTC+TGG	0.181158	8_4:-26940566	Msa1321390:CDS
ATGGCGATTTGATTGATGAA+GGG	0.608092	8_4:-26939268	Msa1321390:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCAAGATCAGTGTTATACAT+TGG	+	chr8_4:26939132-26939151	None:intergenic	30.0%
ATTGCAAAAACGATTGCATA+TGG	-	chr8_4:26939718-26939737	Msa1321390:intron	30.0%
CTATATCTCCGAATTTAGAA+GGG	+	chr8_4:26939820-26939839	None:intergenic	30.0%
ACTATATCTCCGAATTTAGA+AGG	+	chr8_4:26939821-26939840	None:intergenic	30.0%
CAATCAATTGCATTCTTCAA+TGG	+	chr8_4:26939997-26940016	None:intergenic	30.0%
CATTGAAGAATGCAATTGAT+TGG	-	chr8_4:26939995-26940014	Msa1321390:intron	30.0%
TGAGACCAAATTATTCACAT+TGG	-	chr8_4:26940425-26940444	Msa1321390:CDS	30.0%
CAAATTATTCACATTGGTCA+TGG	-	chr8_4:26940431-26940450	Msa1321390:CDS	30.0%
TCAAGATCAGTGTTATACAT+TGG	+	chr8_4:26939132-26939151	None:intergenic	30.0%
ATTGCAAAAACGATTGCATA+TGG	-	chr8_4:26939718-26939737	Msa1321390:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_4	gene	26938889	26940603	26938889	ID=Msa1321390;Name=Msa1321390
chr8_4	mRNA	26938889	26940603	26938889	ID=Msa1321390-mRNA-1;Parent=Msa1321390;Name=Msa1321390-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0\|1\|0.66\|1\|0.5\|0.33\|3\|205\|223
chr8_4	exon	26938889	26938943	26938889	ID=Msa1321390-mRNA-1:exon:9180;Parent=Msa1321390-mRNA-1
chr8_4	exon	26939046	26939500	26939046	ID=Msa1321390-mRNA-1:exon:9179;Parent=Msa1321390-mRNA-1
chr8_4	exon	26940237	26940603	26940237	ID=Msa1321390-mRNA-1:exon:9178;Parent=Msa1321390-mRNA-1
chr8_4	CDS	26940237	26940603	26940237	ID=Msa1321390-mRNA-1:cds;Parent=Msa1321390-mRNA-1
chr8_4	CDS	26939196	26939500	26939196	ID=Msa1321390-mRNA-1:cds;Parent=Msa1321390-mRNA-1
chr8_4	three_prime_UTR	26939046	26939195	26939046	ID=Msa1321390-mRNA-1:three_prime_utr;Parent=Msa1321390-mRNA-1
chr8_4	three_prime_UTR	26938889	26938943	26938889	ID=Msa1321390-mRNA-1:three_prime_utr;Parent=Msa1321390-mRNA-1

Gene Sequence

>Msa1321390

ATGGCAGAAGCAGTGATCAAAGTGGCAGCTCTTTCTGGTTCCTTCAGAAAAGCTTCATACCATTCAGGCCTTATCCGTGCTGGTTCGTCTTCTTTTGTTTTGTTCAAGTGTTTCTTCTTTGATATGTTTACAAATTGTTGTAGTTTTGAATTTGCATGGTTGATGATGATTGCAGCAATTGAGTTGAGTAAAGGAGCAATTGAAGGCATTGAGATTGAGTTCATTGATATTTCAACTCTACCAATGTATAACACTGATCTTGAGAGCAATGGAACTTATCCACCTCTTGTTGAAGCTTTTCGCCACAAGATTCTTCAAGCTGATAGTGTTCTTTTTGCTTCTCCTGAGTATAACTACTCTCTCACAGCTCCATTGAAGAATGCAATTGATTGGGCGTCTAGACCACCAAATGTTTGGGCTGGCAAAGCAGCTGCAATCATAAGCACTGGAGGAGACTTTGGCGGGGGAAGATCACACTATCATCTACGCCAAGTTGGAATTTATATTGATCTTCATTTCATCAATAAACCTGAGTTCTTTCTAAGAGCATTTGAGCCACCTGCAAAGTTCAATGATGATGGCGATTTGATTGATGAAGGGGCTAAGGATAAGCTTAAGCAAGTTCTTTTATCATTGCAGGCATTTACTCTAAGGCTTCAAGGCAAAAACTGA

Protein sequence

>Msa1321390

MAEAVIKVAALSGSFRKASYHSGLIRAGSSSFVLFKCFFFDMFTNCCSFEFAWLMMIAAIELSKGAIEGIEIEFIDISTLPMYNTDLESNGTYPPLVEAFRHKILQADSVLFASPEYNYSLTAPLKNAIDWASRPPNVWAGKAAAIISTGGDFGGGRSHYHLRQVGIYIDLHFINKPEFFLRAFEPPAKFNDDGDLIDEGAKDKLKQVLLSLQAFTLRLQGKN*