AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0755150


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0755150 MtrunA17_Chr5g0400181 96.937 555 17 0 1 555 1 555 0.0 1100
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0755150 AT5G18070.1 66.075 563 174 6 1 555 1 554 0.0 744

Find 142 sgRNAs with CRISPR-Local

Find 337 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCTGTTTGCTGTATTTATT+AGG 0.199901 5_2:-8950171 Msa0755150:CDS
TCAATTTGAGAATTGCTTTC+AGG 0.215042 5_2:+8950220 None:intergenic
AAACTTGTGGATCAATTCTT+AGG 0.217228 5_2:-8948705 Msa0755150:CDS
CTATAATGCCAGGAGTTTAT+TGG 0.237590 5_2:+8948622 None:intergenic
CATAATAAAATTTCTGATAA+TGG 0.249529 5_2:-8952582 Msa0755150:CDS
AAAGGCTGCTTTGAGATTAT+TGG 0.254305 5_2:-8949767 Msa0755150:CDS
TTTGCTGTGCAAACAGATAT+TGG 0.260161 5_2:+8948462 None:intergenic
TGAAATTGAGTGGATTTAAA+AGG 0.269726 5_2:+8948539 None:intergenic
GGGGTATGTTGTCTCAAAAT+TGG 0.281185 5_2:-8952536 Msa0755150:CDS
CAGGCCGACTGAAATACTTT+TGG 0.283967 5_2:-8951197 Msa0755150:CDS
CATACAAGTTTCTGCATTGA+TGG 0.285647 5_2:+8949299 None:intergenic
TTCTCCTCAACAACTTCTTC+AGG 0.285950 5_2:-8952481 Msa0755150:intron
TGCTTTGAGTGGAGTGCTTT+TGG 0.290699 5_2:-8949710 Msa0755150:CDS
GATGGTTCGTGCTAGAAATA+AGG 0.298523 5_2:-8950963 Msa0755150:CDS
CTATGAAAGATTCCGAAAAT+AGG 0.302327 5_2:+8949927 None:intergenic
CCTGTTTGCTGTATTTATTA+GGG 0.309077 5_2:-8950170 Msa0755150:CDS
TGTGGATCAATTCTTAGGTT+AGG 0.328794 5_2:-8948700 Msa0755150:exon
GTCTTAAGATATAAATATAT+TGG 0.332111 5_2:+8948507 None:intergenic
GTCGTCGACGACTTTGCTTC+AGG 0.338950 5_2:-8953181 Msa0755150:intron
GGATTCCGTTTGATGGGTTC+AGG 0.346566 5_2:-8951216 Msa0755150:CDS
TGAATGGATCAGGTGCTTAA+TGG 0.346960 5_2:-8950775 Msa0755150:intron
TGTGAGTCCACCTGGTTTGC+AGG 0.348771 5_2:-8949325 Msa0755150:CDS
TCTCAAATTGATCTTGTTGA+TGG 0.349874 5_2:-8950208 Msa0755150:CDS
ATGAATTTGTTGAGAAAGAA+AGG 0.353334 5_2:-8951237 Msa0755150:CDS
AGTTTGCAGGTGTGCTAGTT+TGG 0.357606 5_2:-8950281 Msa0755150:intron
AACAGCTAACCAGCTCATTC+AGG 0.360513 5_2:-8950910 Msa0755150:intron
TGATGGGGTGAATGACAAAT+TGG 0.374986 5_2:-8950724 Msa0755150:CDS
ATTGTTGAATGTGTTGGATA+TGG 0.376034 5_2:-8950649 Msa0755150:CDS
CGATGCTTTGTTCGACCATC+AGG 0.387820 5_2:-8948804 Msa0755150:CDS
GGTGTACAGAGTTGGAATTC+TGG 0.392919 5_2:-8952661 Msa0755150:CDS
GTGGATCAATTCTTAGGTTA+GGG 0.396539 5_2:-8948699 Msa0755150:exon
AAGACTATAATGATGTTTGC+TGG 0.398487 5_2:-8948489 Msa0755150:three_prime_UTR
AAAGAAAGGATTCCGTTTGA+TGG 0.399610 5_2:-8951223 Msa0755150:CDS
AGCTTCCTGCGTGGATGCTT+CGG 0.401056 5_2:+8948755 None:intergenic
CTCAAATTGATCTTGTTGAT+GGG 0.412581 5_2:-8950207 Msa0755150:CDS
GGGCATAAAGGCGGCGGAGC+AGG 0.422098 5_2:-8950942 Msa0755150:CDS
ATCTTTCATAGAGTGGTTAG+AGG 0.424359 5_2:-8949915 Msa0755150:CDS
AAGGGAGTCACTTCAATTGT+TGG 0.428191 5_2:-8951034 Msa0755150:CDS
CCCTAATAAATACAGCAAAC+AGG 0.430995 5_2:+8950170 None:intergenic
TTCTGCATTTGCTGTAACTA+CGG 0.432455 5_2:+8949356 None:intergenic
AGAAGTAACAAGCTTTCTTC+AGG 0.435172 5_2:-8949890 Msa0755150:CDS
GCATCGACCTTGATTGTACT+TGG 0.441277 5_2:+8948821 None:intergenic
AAAGCTGCTGAATTTGATAT+CGG 0.451089 5_2:-8949983 Msa0755150:CDS
ACTGAGCGAAAAGTGTTTGA+TGG 0.451678 5_2:-8950741 Msa0755150:CDS
TGCTAGAAATAAGGGCATAA+AGG 0.454982 5_2:-8950954 Msa0755150:CDS
GGCTTTGGTTCTAAAGATGC+TGG 0.460178 5_2:-8950540 Msa0755150:CDS
GTGGATGGAGCTAATGGTGT+TGG 0.462996 5_2:-8950699 Msa0755150:CDS
GGGTATGTTGTCTCAAAATT+GGG 0.463116 5_2:-8952535 Msa0755150:CDS
CTGGCATTATAGTTTGAAGA+TGG 0.466112 5_2:-8948611 Msa0755150:three_prime_UTR
TTCAGGATCAGAAGCAGAAA+AGG 0.466570 5_2:-8949785 Msa0755150:intron
TTGCTGTAACTACGGATGTT+CGG 0.466748 5_2:+8949364 None:intergenic
TCAAGCAAAGCTTCTCCACT+TGG 0.467584 5_2:+8951160 None:intergenic
GCATAAATTGTTGAATGTGT+TGG 0.470235 5_2:-8950655 Msa0755150:CDS
AGTTTATTGGAAAATCTTGA+TGG 0.470447 5_2:+8948635 None:intergenic
TTAAAATCGCTGATCCGAAT+GGG 0.475395 5_2:-8952557 Msa0755150:CDS
GTACAAACTGCATATGCAAA+TGG 0.487440 5_2:-8950082 Msa0755150:CDS
TCTCGCTTCTTGCTCCCTCA+AGG 0.490159 5_2:-8952882 Msa0755150:intron
AAGAAAGGATTCCGTTTGAT+GGG 0.493408 5_2:-8951222 Msa0755150:CDS
TGAAGAAGTTGTTGAGGAGA+AGG 0.494333 5_2:+8952483 None:intergenic
TGGAGCTGTTGCGTCCGACA+TGG 0.502564 5_2:-8951014 Msa0755150:CDS
CTGACCTTGAGCTGCCTGCT+AGG 0.510637 5_2:+8949622 None:intergenic
ATGGTTCGTGCTAGAAATAA+GGG 0.510648 5_2:-8950962 Msa0755150:CDS
TGACAACTCCACAACTACAT+TGG 0.515072 5_2:-8950985 Msa0755150:CDS
GAAGTCAATTTAACTCCCAC+TGG 0.516230 5_2:-8950025 Msa0755150:CDS
TTTAGCCACACTGTTGGCTA+AGG 0.521652 5_2:+8948725 None:intergenic
TTGGTTGTGGATGGAGCTAA+TGG 0.526538 5_2:-8950705 Msa0755150:CDS
AACTGCGGCAAAGCACGTCT+TGG 0.527184 5_2:-8950109 Msa0755150:CDS
TTGAAAACGCAATCGGTGAT+CGG 0.527378 5_2:-8952624 Msa0755150:CDS
GTTAAAATCGCTGATCCGAA+TGG 0.529348 5_2:-8952558 Msa0755150:CDS
GGAGCTGTTGCGTCCGACAT+GGG 0.532863 5_2:-8951013 Msa0755150:CDS
CATCTTCAAACTATAATGCC+AGG 0.533112 5_2:+8948612 None:intergenic
ATGTAAATATTTCACTCCAG+TGG 0.535599 5_2:+8950009 None:intergenic
AAAATTGCGAAGAACCTTGA+GGG 0.536356 5_2:+8952868 None:intergenic
TTTCGGAATCTTTCATAGAG+TGG 0.536692 5_2:-8949922 Msa0755150:CDS
TGCAGGTGTGCTAGTTTGGA+TGG 0.536956 5_2:-8950277 Msa0755150:intron
GTCGGCCTGAACCCATCAAA+CGG 0.537990 5_2:+8951211 None:intergenic
TGTAAATATTTCACTCCAGT+GGG 0.539907 5_2:+8950010 None:intergenic
GTTTGGATGGAGATGCTGAC+CGG 0.539986 5_2:-8950264 Msa0755150:CDS
TCAAATTGATCTTGTTGATG+GGG 0.541951 5_2:-8950206 Msa0755150:CDS
AACTCCACAACTACATTGGA+TGG 0.542214 5_2:-8950981 Msa0755150:CDS
AAGCTTTCTTCAGGATCCAA+AGG 0.546144 5_2:-8949881 Msa0755150:intron
TTTGCAAGTTCGTCAGCGAA+CGG 0.546146 5_2:+8952510 None:intergenic
CTGAGCGAAAAGTGTTTGAT+GGG 0.546436 5_2:-8950740 Msa0755150:CDS
TTGATGGCTTCCTGCAAACC+AGG 0.550150 5_2:+8949315 None:intergenic
CATTATAGTTTGAAGATGGT+TGG 0.551371 5_2:-8948607 Msa0755150:three_prime_UTR
ACTGTGGTTGTGAGTCCACC+TGG 0.553423 5_2:-8949333 Msa0755150:CDS
GATGGAGCTAATGGTGTTGG+TGG 0.553803 5_2:-8950696 Msa0755150:CDS
CTGAATCTGTGTTGAAGCCA+TGG 0.555687 5_2:-8952940 Msa0755150:exon
GTTGAATGTGTTGGATATGG+AGG 0.556596 5_2:-8950646 Msa0755150:CDS
TTTATCTCGATCTACCTAGC+AGG 0.558657 5_2:-8949636 Msa0755150:CDS
GACGAAGGTGTATTGAATGA+TGG 0.561051 5_2:-8950606 Msa0755150:CDS
CCTAATAAATACAGCAAACA+GGG 0.565024 5_2:+8950171 None:intergenic
TCAAAGCATCTCCTACTGCT+TGG 0.568654 5_2:+8949725 None:intergenic
TCTACCTAGCAGGCAGCTCA+AGG 0.570097 5_2:-8949626 Msa0755150:intron
GGTGAATGACAAATTGGTTG+TGG 0.570163 5_2:-8950718 Msa0755150:CDS
GCTTTGAGATTATTGGCAGT+CGG 0.577820 5_2:-8949760 Msa0755150:CDS
AATGACAAATTGGTTGTGGA+TGG 0.579476 5_2:-8950714 Msa0755150:CDS
CACAAGTTTAGCCACACTGT+TGG 0.579773 5_2:+8948719 None:intergenic
GAGATCGTTGAAAACGCAAT+CGG 0.580026 5_2:-8952631 Msa0755150:CDS
TGCATCGATTCTGTCGTCGA+CGG 0.582873 5_2:-8952682 Msa0755150:CDS
AAGGTGTCGTATGGTACGGC+GGG 0.584569 5_2:-8952717 Msa0755150:CDS
ATTTGAGAATTGCTTTCAGG+TGG 0.585796 5_2:+8950223 None:intergenic
GGAAGTCATATTGAAGCACA+TGG 0.585933 5_2:-8949686 Msa0755150:CDS
TCGTCGACGGTGTACAGAGT+TGG 0.592319 5_2:-8952669 Msa0755150:CDS
CGAACCATCCAATGTAGTTG+TGG 0.594215 5_2:+8950977 None:intergenic
CAACAGTGTGGCTAAACTTG+TGG 0.595844 5_2:-8948718 Msa0755150:CDS
GAAGCACATGTGAAATTGAG+TGG 0.600496 5_2:+8948529 None:intergenic
TCATATTGAAGCACATGGGA+TGG 0.600856 5_2:-8949681 Msa0755150:CDS
CTCCCCAAAAGTATTTCAGT+CGG 0.606500 5_2:+8951193 None:intergenic
TGGGATGGTCAATACAGAGA+TGG 0.607831 5_2:-8949666 Msa0755150:CDS
AATACAGTTAGATGGAGATG+TGG 0.608604 5_2:+8948572 None:intergenic
AAGTTGATCAACCAAGCAGT+AGG 0.610283 5_2:-8949736 Msa0755150:CDS
AGTGAAGGTGTCGTATGGTA+CGG 0.614377 5_2:-8952721 Msa0755150:CDS
GTTCTAAAGATGCTGGCACA+AGG 0.616918 5_2:-8950533 Msa0755150:intron
GCAGTAGGAGATGCTTTGAG+TGG 0.617815 5_2:-8949721 Msa0755150:CDS
GAAGGTGTCGTATGGTACGG+CGG 0.620088 5_2:-8952718 Msa0755150:CDS
AAATAAGGGCATAAAGGCGG+CGG 0.621092 5_2:-8950948 Msa0755150:CDS
TTGTACTGACCTGAATGAGC+TGG 0.622362 5_2:+8950901 None:intergenic
TAAAATCGCTGATCCGAATG+GGG 0.628884 5_2:-8952556 Msa0755150:CDS
ACAACATCCTCAGTTCCTGA+TGG 0.640812 5_2:+8948789 None:intergenic
GGTATCTGCAGCTTCCTGCG+TGG 0.645035 5_2:+8948746 None:intergenic
GTAGGAGTGAAGGTGTCGTA+TGG 0.647255 5_2:-8952726 Msa0755150:intron
TGAAGCAAAGTCGTCGACGA+CGG 0.647435 5_2:+8953183 Msa0755160:CDS
TACAGCAAATGCAGAAACTG+TGG 0.647747 5_2:-8949349 Msa0755150:CDS
CCGAAAATAGGATAGTTCCA+TGG 0.647835 5_2:+8949939 None:intergenic
TGTTCGACCATCAGGAACTG+AGG 0.653263 5_2:-8948796 Msa0755150:CDS
GTACAGAGTTGGAATTCTGG+CGG 0.655280 5_2:-8952658 Msa0755150:CDS
GGGAGAGACACAAGGCCAAG+TGG 0.658164 5_2:-8951175 Msa0755150:CDS
TAGAAATAAGGGCATAAAGG+CGG 0.658465 5_2:-8950951 Msa0755150:CDS
AGTTGTCAAAATGCCCATGT+CGG 0.663393 5_2:+8951000 None:intergenic
ATGGCTTCCTGCAAACCAGG+TGG 0.669699 5_2:+8949318 None:intergenic
GGTGTATTGAATGATGGAGT+CGG 0.675083 5_2:-8950600 Msa0755150:CDS
CAAACCTGAAGAAGTTGTTG+AGG 0.675857 5_2:+8952477 None:intergenic
AAAATCGCTGATCCGAATGG+GGG 0.681857 5_2:-8952555 Msa0755150:CDS
GAAGTCATATTGAAGCACAT+GGG 0.697397 5_2:-8949685 Msa0755150:CDS
CGAAATAGCAGTGATGACGA+AGG 0.699562 5_2:-8950621 Msa0755150:CDS
TGATTATGTGCAGAAAGAGA+AGG 0.707330 5_2:-8950574 Msa0755150:CDS
ATATGCCGAAGCATCCACGC+AGG 0.714226 5_2:-8948760 Msa0755150:CDS
TCTTTAGAACCAAAGCCGCG+TGG 0.716832 5_2:+8950546 None:intergenic
AAAGAGAAGGTTGCTCCACG+CGG 0.735177 5_2:-8950561 Msa0755150:CDS
TGAGCGAAAAGTGTTTGATG+GGG 0.765554 5_2:-8950739 Msa0755150:CDS
AGATACCTTAGCCAACAGTG+TGG 0.790848 5_2:-8948730 Msa0755150:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATATATATTAATTA+AGG + chr5_2:8950157-8950176 None:intergenic 0.0%
!! AATTAATTAATTAAAAGGAA+GGG + chr5_2:8948653-8948672 None:intergenic 10.0%
!! TAATTAATTAATTAAAAGGA+AGG + chr5_2:8948654-8948673 None:intergenic 10.0%
!! TGGTTAATTAATTAATTAAA+AGG + chr5_2:8948658-8948677 None:intergenic 10.0%
!! CATAATAAAATTTCTGATAA+TGG - chr5_2:8949061-8949080 Msa0755150:intron 15.0%
!! AAATAATTGGATAAATATGA+AGG - chr5_2:8950590-8950609 Msa0755150:CDS 15.0%
!! AATAATTGGATAAATATGAA+GGG - chr5_2:8950591-8950610 Msa0755150:CDS 15.0%
!! TACTAATTACCTTAAAAATT+TGG - chr5_2:8951590-8951609 Msa0755150:intron 15.0%
!! TATATAACAATAACAAAAGT+AGG + chr5_2:8952151-8952170 None:intergenic 15.0%
!!! TGATTTTTTAAAATTTTACG+AGG - chr5_2:8952678-8952697 Msa0755150:CDS 15.0%
!!! GATTTTTTAAAATTTTACGA+GGG - chr5_2:8952679-8952698 Msa0755150:CDS 15.0%
!! AGTTTAATGTTCTAATTAAA+AGG + chr5_2:8952740-8952759 None:intergenic 15.0%
!! GTCTTAAGATATAAATATAT+TGG + chr5_2:8953139-8953158 None:intergenic 15.0%
!! CTGAAACAATGTTAATATTA+TGG + chr5_2:8948678-8948697 None:intergenic 20.0%
!! TTCTGTTATTACTGTTAATA+CGG - chr5_2:8948857-8948876 Msa0755150:intron 20.0%
!!! TTTTGTTTTTTTTTGTGTGT+AGG - chr5_2:8948899-8948918 Msa0755150:intron 20.0%
!! TTGAACTTAACTATCATTAT+CGG - chr5_2:8949522-8949541 Msa0755150:intron 20.0%
!!! GTACAAAATTTTAAATTGGT+CGG + chr5_2:8949619-8949638 None:intergenic 20.0%
!!! CATGGTACAAAATTTTAAAT+TGG + chr5_2:8949623-8949642 None:intergenic 20.0%
!!! ATTTAAAATTTTGTACCATG+AGG - chr5_2:8949623-8949642 Msa0755150:intron 20.0%
!!! GCAAAAAAAGTACTTATATT+TGG - chr5_2:8950069-8950088 Msa0755150:CDS 20.0%
!! ACAATGAATGTTATTATATG+CGG - chr5_2:8950369-8950388 Msa0755150:intron 20.0%
!! GTATTAAAGTCGTAAATAAT+TGG - chr5_2:8950577-8950596 Msa0755150:CDS 20.0%
!! AAAATGAATATTTACATCTC+AGG - chr5_2:8951158-8951177 Msa0755150:CDS 20.0%
!!! GTTGAGATTATCTTTTTTAA+TGG - chr5_2:8951203-8951222 Msa0755150:CDS 20.0%
!! CTTGCTTAATGTTATTATAT+TGG - chr5_2:8951298-8951317 Msa0755150:intron 20.0%
!!! ATTTATTGTGTTACTACTAA+TGG - chr5_2:8951325-8951344 Msa0755150:intron 20.0%
!! AAAGAAGATATAAAAAACTG+CGG - chr5_2:8951519-8951538 Msa0755150:intron 20.0%
!! TTATCTTACTATATCATTTC+TGG - chr5_2:8952050-8952069 Msa0755150:intron 20.0%
!!! ATTCTTTGATTCTAAAAGAT+TGG - chr5_2:8952536-8952555 Msa0755150:CDS 20.0%
!! TATGTTAGTTCATTATTGAT+TGG - chr5_2:8952562-8952581 Msa0755150:CDS 20.0%
!! ATTCAATTAACAAACATTGA+AGG + chr5_2:8952631-8952650 None:intergenic 20.0%
!! GATAAAAAAATACAGTTAGA+TGG + chr5_2:8953082-8953101 None:intergenic 20.0%
!! TCAATTTGAAATTGTGTGAT+AGG - chr5_2:8949211-8949230 Msa0755150:intron 25.0%
!!! TGTCACAAAGATAACTTTTT+TGG + chr5_2:8949320-8949339 None:intergenic 25.0%
! GTCTTCAAAAAAAAATGAAG+GGG + chr5_2:8949448-8949467 None:intergenic 25.0%
! GGTCTTCAAAAAAAAATGAA+GGG + chr5_2:8949449-8949468 None:intergenic 25.0%
! AGGTCTTCAAAAAAAAATGA+AGG + chr5_2:8949450-8949469 None:intergenic 25.0%
!!! ATTTGATTTGCTAGCATATA+TGG + chr5_2:8949498-8949517 None:intergenic 25.0%
! GAAAATTTCAACCAATTTGA+AGG + chr5_2:8949564-8949583 None:intergenic 25.0%
! TAATCCAATCCCTTATAAAA+AGG - chr5_2:8949684-8949703 Msa0755150:CDS 25.0%
! AATCCAATCCCTTATAAAAA+GGG - chr5_2:8949685-8949704 Msa0755150:CDS 25.0%
! TAACAACAACAAAAACCATT+TGG + chr5_2:8949821-8949840 None:intergenic 25.0%
!! TAAATTTGCATGATTCCTTT+TGG - chr5_2:8949841-8949860 Msa0755150:intron 25.0%
!! TATTATTTAGTACTGAGTTC+TGG - chr5_2:8949920-8949939 Msa0755150:CDS 25.0%
! TTGTACTTTGCCTATTTAAA+AGG - chr5_2:8949967-8949986 Msa0755150:CDS 25.0%
! ATCACACTAATTAAGAAACT+TGG + chr5_2:8950300-8950319 None:intergenic 25.0%
!!! ATGAATTTGTTGAGAAAGAA+AGG - chr5_2:8950406-8950425 Msa0755150:intron 25.0%
! TAGAAGCTGAATATAGTTTA+TGG + chr5_2:8950531-8950550 None:intergenic 25.0%
!! TGATATCGGTATATATTTTG+AGG - chr5_2:8951674-8951693 Msa0755150:intron 25.0%
!! AGAGCAAAACATAAATCTTT+TGG - chr5_2:8951827-8951846 Msa0755150:intron 25.0%
!!! TTAAACTGTTCTGAAATCAA+CGG - chr5_2:8952217-8952236 Msa0755150:intron 25.0%
!! AATTATGCAAGATTTGTTTG+AGG - chr5_2:8952493-8952512 Msa0755150:CDS 25.0%
! TTAACAAACATTGAAGGAAA+AGG + chr5_2:8952625-8952644 None:intergenic 25.0%
!! ATTAAAAGGCATAAGTAGAT+GGG + chr5_2:8952726-8952745 None:intergenic 25.0%
!! AATTAAAAGGCATAAGTAGA+TGG + chr5_2:8952727-8952746 None:intergenic 25.0%
! AGTTTATTGGAAAATCTTGA+TGG + chr5_2:8953011-8953030 None:intergenic 25.0%
!! TGAAATTGAGTGGATTTAAA+AGG + chr5_2:8953107-8953126 None:intergenic 25.0%
GTTAGTTAAGCGTTAAGAAT+GGG + chr5_2:8948522-8948541 None:intergenic 30.0%
AGTTAGTTAAGCGTTAAGAA+TGG + chr5_2:8948523-8948542 None:intergenic 30.0%
! AGATTTTTGTTCTTCATCCA+TGG + chr5_2:8948723-8948742 None:intergenic 30.0%
TTGAAATTGTGTGATAGGTT+AGG - chr5_2:8949216-8949235 Msa0755150:intron 30.0%
ACACTGAATTTATCAACCAT+TGG - chr5_2:8949337-8949356 Msa0755150:CDS 30.0%
GGATATTCAAAGTTAACCAA+TGG + chr5_2:8949356-8949375 None:intergenic 30.0%
TACAAATCATGAGATGGATA+TGG + chr5_2:8949401-8949420 None:intergenic 30.0%
AGGAAATACAAATCATGAGA+TGG + chr5_2:8949407-8949426 None:intergenic 30.0%
TTCAAAAAAAAATGAAGGGG+TGG + chr5_2:8949445-8949464 None:intergenic 30.0%
ACCTAATACAATGCATAACA+CGG + chr5_2:8949592-8949611 None:intergenic 30.0%
! AAATTTTGTACCATGAGGTT+AGG - chr5_2:8949628-8949647 Msa0755150:CDS 30.0%
! CTTCACTTCCCTTTTTATAA+GGG + chr5_2:8949696-8949715 None:intergenic 30.0%
! ACTTCACTTCCCTTTTTATA+AGG + chr5_2:8949697-8949716 None:intergenic 30.0%
AGTATGTTTGAATCTCCAAA+TGG - chr5_2:8949803-8949822 Msa0755150:intron 30.0%
! CATTAACGTGCCTTTTAAAT+AGG + chr5_2:8949980-8949999 None:intergenic 30.0%
! GACATACTTCGTCTTTTATT+TGG - chr5_2:8950023-8950042 Msa0755150:CDS 30.0%
! TAACGTCTCTTTTATTCTCA+TGG - chr5_2:8950202-8950221 Msa0755150:CDS 30.0%
ATTGTGAAGTTAAGTACTTC+TGG - chr5_2:8950318-8950337 Msa0755150:intron 30.0%
CATCATAACAGAATTAGGAA+AGG + chr5_2:8950769-8950788 None:intergenic 30.0%
CTATGCATCATAACAGAATT+AGG + chr5_2:8950774-8950793 None:intergenic 30.0%
! TTGTTTCTTTCTGTGATTGA+TGG - chr5_2:8950807-8950826 Msa0755150:intron 30.0%
CATTCACATAATGATCCTTA+AGG + chr5_2:8950854-8950873 None:intergenic 30.0%
CTTAAGGATCATTATGTGAA+TGG - chr5_2:8950852-8950871 Msa0755150:intron 30.0%
GCATAAATTGTTGAATGTGT+TGG - chr5_2:8950988-8951007 Msa0755150:CDS 30.0%
ATTGTTGAATGTGTTGGATA+TGG - chr5_2:8950994-8951013 Msa0755150:CDS 30.0%
TCTCAACTGTCATAACATAA+TGG + chr5_2:8951190-8951209 None:intergenic 30.0%
GTACTGAAAAATAAACAAGC+CGG + chr5_2:8951401-8951420 None:intergenic 30.0%
TCAATTTGAGAATTGCTTTC+AGG + chr5_2:8951426-8951445 None:intergenic 30.0%
TCTCAAATTGATCTTGTTGA+TGG - chr5_2:8951435-8951454 Msa0755150:intron 30.0%
CTCAAATTGATCTTGTTGAT+GGG - chr5_2:8951436-8951455 Msa0755150:intron 30.0%
TCAAATTGATCTTGTTGATG+GGG - chr5_2:8951437-8951456 Msa0755150:intron 30.0%
CCTAATAAATACAGCAAACA+GGG + chr5_2:8951475-8951494 None:intergenic 30.0%
!! CCTGTTTGCTGTATTTATTA+GGG - chr5_2:8951473-8951492 Msa0755150:intron 30.0%
! CTTCGAGATCCAAATTTTTA+AGG + chr5_2:8951602-8951621 None:intergenic 30.0%
TGTAAATATTTCACTCCAGT+GGG + chr5_2:8951636-8951655 None:intergenic 30.0%
ATGTAAATATTTCACTCCAG+TGG + chr5_2:8951637-8951656 None:intergenic 30.0%
AAAGCTGCTGAATTTGATAT+CGG - chr5_2:8951660-8951679 Msa0755150:intron 30.0%
!!! GGTATATATTTTGAGGCAAA+TGG - chr5_2:8951681-8951700 Msa0755150:intron 30.0%
CTATGAAAGATTCCGAAAAT+AGG + chr5_2:8951719-8951738 None:intergenic 30.0%
!! ATCTTTTGGTTGTTTGTTTC+AGG - chr5_2:8951841-8951860 Msa0755150:intron 30.0%
TATATTGCAGGTAATTTGAC+AGG - chr5_2:8952103-8952122 Msa0755150:intron 30.0%
CTAACAGTTTAAAAAACCAG+AGG + chr5_2:8952245-8952264 None:intergenic 30.0%
!!! CTCTGGTTTTTTAAACTGTT+AGG - chr5_2:8952243-8952262 Msa0755150:intron 30.0%
TTTGTTGCCGTGATATAATA+TGG - chr5_2:8952389-8952408 Msa0755150:intron 30.0%
AGTGGTTCCATATTATATCA+CGG + chr5_2:8952399-8952418 None:intergenic 30.0%
CAAATCTTGCATAATTGATG+TGG + chr5_2:8952489-8952508 None:intergenic 30.0%
AAACTTGTGGATCAATTCTT+AGG - chr5_2:8952938-8952957 Msa0755150:exon 30.0%
! AAGATTTTCCAATAAACTCC+TGG - chr5_2:8953013-8953032 Msa0755150:intron 30.0%
CATTATAGTTTGAAGATGGT+TGG - chr5_2:8953036-8953055 Msa0755150:intron 30.0%
AAGACTATAATGATGTTTGC+TGG - chr5_2:8953154-8953173 Msa0755150:intron 30.0%
AAAATTGCGAAGAACCTTGA+GGG + chr5_2:8948778-8948797 None:intergenic 35.0%
AAAAATTGCGAAGAACCTTG+AGG + chr5_2:8948779-8948798 None:intergenic 35.0%
!!! TTTTTTGTGTGTAGGAGTGA+AGG - chr5_2:8948907-8948926 Msa0755150:intron 35.0%
TTAAAATCGCTGATCCGAAT+GGG - chr5_2:8949086-8949105 Msa0755150:intron 35.0%
GGGTATGTTGTCTCAAAATT+GGG - chr5_2:8949108-8949127 Msa0755150:intron 35.0%
! TCAACAACTTCTTCAGGTTT+GGG - chr5_2:8949168-8949187 Msa0755150:intron 35.0%
TGTGTGATAGGTTAGGTTTA+TGG - chr5_2:8949223-8949242 Msa0755150:intron 35.0%
TAAGCTGATACAATGCTAGA+TGG + chr5_2:8949252-8949271 None:intergenic 35.0%
AACCAATTTGAAGGACTTGT+TGG + chr5_2:8949555-8949574 None:intergenic 35.0%
ACCGTGTTATGCATTGTATT+AGG - chr5_2:8949588-8949607 Msa0755150:intron 35.0%
AGGTTAGGCCCATTATTAAA+GGG - chr5_2:8949643-8949662 Msa0755150:CDS 35.0%
GTATCCTCCCCTTTAATAAT+GGG + chr5_2:8949654-8949673 None:intergenic 35.0%
TGTATCCTCCCCTTTAATAA+TGG + chr5_2:8949655-8949674 None:intergenic 35.0%
! CTTCCCTTTTTATAAGGGAT+TGG + chr5_2:8949691-8949710 None:intergenic 35.0%
AGGGAAGTGAAGTAATAGAA+AGG - chr5_2:8949704-8949723 Msa0755150:CDS 35.0%
GGGAAGTGAAGTAATAGAAA+GGG - chr5_2:8949705-8949724 Msa0755150:CDS 35.0%
GGAAGTGAAGTAATAGAAAG+GGG - chr5_2:8949706-8949725 Msa0755150:CDS 35.0%
ATGTGAGGTGAAATTCCAAA+AGG + chr5_2:8949859-8949878 None:intergenic 35.0%
! AAAGGCACGTTAATGAAGTA+AGG - chr5_2:8949985-8950004 Msa0755150:CDS 35.0%
TGGTTATAATCGAGATCGAA+AGG - chr5_2:8950338-8950357 Msa0755150:intron 35.0%
AAAGAAAGGATTCCGTTTGA+TGG - chr5_2:8950420-8950439 Msa0755150:intron 35.0%
AAGAAAGGATTCCGTTTGAT+GGG - chr5_2:8950421-8950440 Msa0755150:intron 35.0%
ATGGTTCGTGCTAGAAATAA+GGG - chr5_2:8950681-8950700 Msa0755150:CDS 35.0%
! TGCTAGAAATAAGGGCATAA+AGG - chr5_2:8950689-8950708 Msa0755150:CDS 35.0%
! TAGAAATAAGGGCATAAAGG+CGG - chr5_2:8950692-8950711 Msa0755150:CDS 35.0%
CTTAAGGATGTGTTCAATGA+TGG + chr5_2:8950838-8950857 None:intergenic 35.0%
CATCATTGAACACATCCTTA+AGG - chr5_2:8950836-8950855 Msa0755150:intron 35.0%
GATCATTATGTGAATGGATC+AGG - chr5_2:8950858-8950877 Msa0755150:intron 35.0%
AATGACAAATTGGTTGTGGA+TGG - chr5_2:8950929-8950948 Msa0755150:CDS 35.0%
TGATTATGTGCAGAAAGAGA+AGG - chr5_2:8951069-8951088 Msa0755150:intron 35.0%
ATGATTTAACCAATCCACAC+TGG - chr5_2:8951240-8951259 Msa0755150:CDS 35.0%
GTCTACTAAATCAAAGGTAG+GGG + chr5_2:8951274-8951293 None:intergenic 35.0%
CGTCTACTAAATCAAAGGTA+GGG + chr5_2:8951275-8951294 None:intergenic 35.0%
ACGTCTACTAAATCAAAGGT+AGG + chr5_2:8951276-8951295 None:intergenic 35.0%
AGACACGTCTACTAAATCAA+AGG + chr5_2:8951280-8951299 None:intergenic 35.0%
TTACTACTAATGGAGCTAGT+TGG - chr5_2:8951335-8951354 Msa0755150:intron 35.0%
ATTTGAGAATTGCTTTCAGG+TGG + chr5_2:8951423-8951442 None:intergenic 35.0%
!! CCCTGTTTGCTGTATTTATT+AGG - chr5_2:8951472-8951491 Msa0755150:intron 35.0%
CCCTAATAAATACAGCAAAC+AGG + chr5_2:8951476-8951495 None:intergenic 35.0%
GTACAAACTGCATATGCAAA+TGG - chr5_2:8951561-8951580 Msa0755150:intron 35.0%
! CCATGGAACTATCCTATTTT+CGG - chr5_2:8951704-8951723 Msa0755150:intron 35.0%
TTTCGGAATCTTTCATAGAG+TGG - chr5_2:8951721-8951740 Msa0755150:intron 35.0%
ATCTTTCATAGAGTGGTTAG+AGG - chr5_2:8951728-8951747 Msa0755150:intron 35.0%
AGAAGTAACAAGCTTTCTTC+AGG - chr5_2:8951753-8951772 Msa0755150:intron 35.0%
GGATCCAAAGGTTTATTCAA+TGG - chr5_2:8951774-8951793 Msa0755150:intron 35.0%
GAAGCCATTGAATAAACCTT+TGG + chr5_2:8951781-8951800 None:intergenic 35.0%
!! AAAGGCTGCTTTGAGATTAT+TGG - chr5_2:8951876-8951895 Msa0755150:intron 35.0%
GAAGTCATATTGAAGCACAT+GGG - chr5_2:8951958-8951977 Msa0755150:intron 35.0%
ACCACAAGAAGTTATATTGC+AGG - chr5_2:8952091-8952110 Msa0755150:intron 35.0%
ACCTGCAATATAACTTCTTG+TGG + chr5_2:8952095-8952114 None:intergenic 35.0%
GTAATTTGACAGGTAGTCAA+GGG - chr5_2:8952113-8952132 Msa0755150:intron 35.0%
!! TTCTGCATTTGCTGTAACTA+CGG + chr5_2:8952290-8952309 None:intergenic 35.0%
CATACAAGTTTCTGCATTGA+TGG + chr5_2:8952347-8952366 None:intergenic 35.0%
CATCAATGCAGAAACTTGTA+TGG - chr5_2:8952345-8952364 Msa0755150:intron 35.0%
CGGCAACAAATAAAAAGAGA+AGG + chr5_2:8952379-8952398 None:intergenic 35.0%
GTTGTACTAATATTGCAGCT+TGG - chr5_2:8952775-8952794 Msa0755150:intron 35.0%
! TTTTCAGCCAAGTACAATCA+AGG - chr5_2:8952815-8952834 Msa0755150:intron 35.0%
TGTGGATCAATTCTTAGGTT+AGG - chr5_2:8952943-8952962 Msa0755150:exon 35.0%
GTGGATCAATTCTTAGGTTA+GGG - chr5_2:8952944-8952963 Msa0755150:five_prime_UTR 35.0%
CTATAATGCCAGGAGTTTAT+TGG + chr5_2:8953024-8953043 None:intergenic 35.0%
CATCTTCAAACTATAATGCC+AGG + chr5_2:8953034-8953053 None:intergenic 35.0%
CTGGCATTATAGTTTGAAGA+TGG - chr5_2:8953032-8953051 Msa0755150:intron 35.0%
AATACAGTTAGATGGAGATG+TGG + chr5_2:8953074-8953093 None:intergenic 35.0%
! TTTGCTGTGCAAACAGATAT+TGG + chr5_2:8953184-8953203 Msa0755160:CDS 35.0%
! TAAGAATGGGTTTACTGTGG+TGG + chr5_2:8948509-8948528 None:intergenic 40.0%
! CGTTAAGAATGGGTTTACTG+TGG + chr5_2:8948512-8948531 None:intergenic 40.0%
ACGCTTAACTAACTCTCTCT+AGG - chr5_2:8948529-8948548 Msa0755150:three_prime_UTR 40.0%
GAGATCGTTGAAAACGCAAT+CGG - chr5_2:8949012-8949031 Msa0755150:intron 40.0%
TTGAAAACGCAATCGGTGAT+CGG - chr5_2:8949019-8949038 Msa0755150:intron 40.0%
GTTAAAATCGCTGATCCGAA+TGG - chr5_2:8949085-8949104 Msa0755150:intron 40.0%
TAAAATCGCTGATCCGAATG+GGG - chr5_2:8949087-8949106 Msa0755150:intron 40.0%
GGGGTATGTTGTCTCAAAAT+TGG - chr5_2:8949107-8949126 Msa0755150:intron 40.0%
TGAAGAAGTTGTTGAGGAGA+AGG + chr5_2:8949163-8949182 None:intergenic 40.0%
TTCTCCTCAACAACTTCTTC+AGG - chr5_2:8949162-8949181 Msa0755150:intron 40.0%
CAAACCTGAAGAAGTTGTTG+AGG + chr5_2:8949169-8949188 None:intergenic 40.0%
! CTCAACAACTTCTTCAGGTT+TGG - chr5_2:8949167-8949186 Msa0755150:intron 40.0%
TCATGAGATGGATATGGTCA+AGG + chr5_2:8949395-8949414 None:intergenic 40.0%
GTGGAAGGTGAGAAATAAGA+AGG + chr5_2:8949470-8949489 None:intergenic 40.0%
! GCATATATGGATTACGTGGA+AGG + chr5_2:8949485-8949504 None:intergenic 40.0%
! GCTAGCATATATGGATTACG+TGG + chr5_2:8949489-8949508 None:intergenic 40.0%
!! ATTTGAAGGACTTGTTGGCT+GGG + chr5_2:8949550-8949569 None:intergenic 40.0%
!! AATTTGAAGGACTTGTTGGC+TGG + chr5_2:8949551-8949570 None:intergenic 40.0%
AGCCAACAAGTCCTTCAAAT+TGG - chr5_2:8949550-8949569 Msa0755150:intron 40.0%
!! TAATAATGGGCCTAACCTCA+TGG + chr5_2:8949641-8949660 None:intergenic 40.0%
GAGGTTAGGCCCATTATTAA+AGG - chr5_2:8949642-8949661 Msa0755150:CDS 40.0%
GGTTAGGCCCATTATTAAAG+GGG - chr5_2:8949644-8949663 Msa0755150:CDS 40.0%
AGTGAAGTAATAGAAAGGGG+AGG - chr5_2:8949709-8949728 Msa0755150:CDS 40.0%
GTGAAGTAATAGAAAGGGGA+GGG - chr5_2:8949710-8949729 Msa0755150:CDS 40.0%
AGTTAGTGCGGCTAAGTATT+GGG - chr5_2:8949752-8949771 Msa0755150:CDS 40.0%
GGAGATTCAAACATACTGAG+TGG + chr5_2:8949800-8949819 None:intergenic 40.0%
GCACGTTAATGAAGTAAGGA+GGG - chr5_2:8949989-8950008 Msa0755150:CDS 40.0%
! AGGCCGACTGAAATACTTTT+GGG - chr5_2:8950447-8950466 Msa0755150:intron 40.0%
!! CTCCCCAAAAGTATTTCAGT+CGG + chr5_2:8950453-8950472 None:intergenic 40.0%
TTGAAGCTGCTAGACAAGTA+TGG - chr5_2:8950502-8950521 Msa0755150:intron 40.0%
TGAAGCTGCTAGACAAGTAT+GGG - chr5_2:8950503-8950522 Msa0755150:intron 40.0%
AAGGGAGTCACTTCAATTGT+TGG - chr5_2:8950609-8950628 Msa0755150:CDS 40.0%
AGTTGTCAAAATGCCCATGT+CGG + chr5_2:8950646-8950665 None:intergenic 40.0%
TGACAACTCCACAACTACAT+TGG - chr5_2:8950658-8950677 Msa0755150:CDS 40.0%
AACTCCACAACTACATTGGA+TGG - chr5_2:8950662-8950681 Msa0755150:CDS 40.0%
GATGGTTCGTGCTAGAAATA+AGG - chr5_2:8950680-8950699 Msa0755150:CDS 40.0%
TGAATGGATCAGGTGCTTAA+TGG - chr5_2:8950868-8950887 Msa0755150:intron 40.0%
! TCAAACACTTTTCGCTCAGT+CGG + chr5_2:8950902-8950921 None:intergenic 40.0%
!! ACTGAGCGAAAAGTGTTTGA+TGG - chr5_2:8950902-8950921 Msa0755150:intron 40.0%
!! CTGAGCGAAAAGTGTTTGAT+GGG - chr5_2:8950903-8950922 Msa0755150:intron 40.0%
!! TGAGCGAAAAGTGTTTGATG+GGG - chr5_2:8950904-8950923 Msa0755150:intron 40.0%
TGATGGGGTGAATGACAAAT+TGG - chr5_2:8950919-8950938 Msa0755150:CDS 40.0%
GGTGAATGACAAATTGGTTG+TGG - chr5_2:8950925-8950944 Msa0755150:CDS 40.0%
GTTGAATGTGTTGGATATGG+AGG - chr5_2:8950997-8951016 Msa0755150:CDS 40.0%
! GACGAAGGTGTATTGAATGA+TGG - chr5_2:8951037-8951056 Msa0755150:intron 40.0%
! GGTGTATTGAATGATGGAGT+CGG - chr5_2:8951043-8951062 Msa0755150:intron 40.0%
GATAGTTATCCAGTGTGGAT+TGG + chr5_2:8951252-8951271 None:intergenic 40.0%
GAAGTCAATTTAACTCCCAC+TGG - chr5_2:8951618-8951637 Msa0755150:intron 40.0%
!!! TATTTTGAGGCAAATGGCCA+TGG - chr5_2:8951687-8951706 Msa0755150:intron 40.0%
CCGAAAATAGGATAGTTCCA+TGG + chr5_2:8951707-8951726 None:intergenic 40.0%
AAGCTTTCTTCAGGATCCAA+AGG - chr5_2:8951762-8951781 Msa0755150:intron 40.0%
TTCAGGATCAGAAGCAGAAA+AGG - chr5_2:8951858-8951877 Msa0755150:intron 40.0%
!! GCTTTGAGATTATTGGCAGT+CGG - chr5_2:8951883-8951902 Msa0755150:intron 40.0%
! AAGTTGATCAACCAAGCAGT+AGG - chr5_2:8951907-8951926 Msa0755150:intron 40.0%
GGAAGTCATATTGAAGCACA+TGG - chr5_2:8951957-8951976 Msa0755150:intron 40.0%
TCATATTGAAGCACATGGGA+TGG - chr5_2:8951962-8951981 Msa0755150:intron 40.0%
TTTATCTCGATCTACCTAGC+AGG - chr5_2:8952007-8952026 Msa0755150:intron 40.0%
GGTAATTTGACAGGTAGTCA+AGG - chr5_2:8952112-8952131 Msa0755150:intron 40.0%
TTGCTGTAACTACGGATGTT+CGG + chr5_2:8952282-8952301 None:intergenic 40.0%
TACAGCAAATGCAGAAACTG+TGG - chr5_2:8952294-8952313 Msa0755150:intron 40.0%
!! AACCACTCATTTTGACCTCA+AGG - chr5_2:8952412-8952431 Msa0755150:intron 40.0%
CATTTCTACCCACCAATTGA+AGG - chr5_2:8952442-8952461 Msa0755150:intron 40.0%
AGGAAGCAACAACAGTTTGA+CGG + chr5_2:8952605-8952624 None:intergenic 40.0%
GAAGCACATGTGAAATTGAG+TGG + chr5_2:8953117-8953136 None:intergenic 40.0%
CTGAATCTGTGTTGAAGCCA+TGG - chr5_2:8948703-8948722 Msa0755150:CDS 45.0%
!! AGTGAAGGTGTCGTATGGTA+CGG - chr5_2:8948922-8948941 Msa0755150:intron 45.0%
GGTGTACAGAGTTGGAATTC+TGG - chr5_2:8948982-8949001 Msa0755150:intron 45.0%
GTACAGAGTTGGAATTCTGG+CGG - chr5_2:8948985-8949004 Msa0755150:intron 45.0%
AAAATCGCTGATCCGAATGG+GGG - chr5_2:8949088-8949107 Msa0755150:intron 45.0%
TGAGACAACATACCCCCATT+CGG + chr5_2:8949103-8949122 None:intergenic 45.0%
TTTGCAAGTTCGTCAGCGAA+CGG + chr5_2:8949136-8949155 None:intergenic 45.0%
!! TTTGAAGGACTTGTTGGCTG+GGG + chr5_2:8949549-8949568 None:intergenic 45.0%
TACAATGCATAACACGGTGC+TGG + chr5_2:8949586-8949605 None:intergenic 45.0%
TAGGCCCATTATTAAAGGGG+AGG - chr5_2:8949647-8949666 Msa0755150:CDS 45.0%
AGTGTGAAGTGGAGTTAGTG+CGG - chr5_2:8949740-8949759 Msa0755150:CDS 45.0%
GAGTTAGTGCGGCTAAGTAT+TGG - chr5_2:8949751-8949770 Msa0755150:CDS 45.0%
GGCACGTTAATGAAGTAAGG+AGG - chr5_2:8949988-8950007 Msa0755150:CDS 45.0%
! CAGGCCGACTGAAATACTTT+TGG - chr5_2:8950446-8950465 Msa0755150:intron 45.0%
! GGCCGACTGAAATACTTTTG+GGG - chr5_2:8950448-8950467 Msa0755150:intron 45.0%
!! TACTTTTGGGGAGAGACACA+AGG - chr5_2:8950460-8950479 Msa0755150:intron 45.0%
TCAAGCAAAGCTTCTCCACT+TGG + chr5_2:8950486-8950505 None:intergenic 45.0%
CGAACCATCCAATGTAGTTG+TGG + chr5_2:8950669-8950688 None:intergenic 45.0%
! AAATAAGGGCATAAAGGCGG+CGG - chr5_2:8950695-8950714 Msa0755150:CDS 45.0%
AACAGCTAACCAGCTCATTC+AGG - chr5_2:8950733-8950752 Msa0755150:CDS 45.0%
! TTGTACTGACCTGAATGAGC+TGG + chr5_2:8950745-8950764 None:intergenic 45.0%
! CAAACACTTTTCGCTCAGTC+GGG + chr5_2:8950901-8950920 None:intergenic 45.0%
TTGGTTGTGGATGGAGCTAA+TGG - chr5_2:8950938-8950957 Msa0755150:CDS 45.0%
! CGAAATAGCAGTGATGACGA+AGG - chr5_2:8951022-8951041 Msa0755150:CDS 45.0%
!! GGCTTTGGTTCTAAAGATGC+TGG - chr5_2:8951103-8951122 Msa0755150:intron 45.0%
!! GTTCTAAAGATGCTGGCACA+AGG - chr5_2:8951110-8951129 Msa0755150:intron 45.0%
TAGGGGATAGTTATCCAGTG+TGG + chr5_2:8951257-8951276 None:intergenic 45.0%
!! GCTAGTTGGTTCTAGTTTGC+AGG - chr5_2:8951349-8951368 Msa0755150:intron 45.0%
AGTTTGCAGGTGTGCTAGTT+TGG - chr5_2:8951362-8951381 Msa0755150:intron 45.0%
! TCAAAGCATCTCCTACTGCT+TGG + chr5_2:8951921-8951940 None:intergenic 45.0%
!! TGCTTTGAGTGGAGTGCTTT+TGG - chr5_2:8951933-8951952 Msa0755150:intron 45.0%
!! TTTGAGTGGAGTGCTTTTGG+TGG - chr5_2:8951936-8951955 Msa0755150:intron 45.0%
TGGGATGGTCAATACAGAGA+TGG - chr5_2:8951977-8951996 Msa0755150:intron 45.0%
! TCTGAAATCAACGGTTCCTC+TGG - chr5_2:8952226-8952245 Msa0755150:intron 45.0%
!! TAGAAATGCAACTGGCCTTG+AGG + chr5_2:8952430-8952449 None:intergenic 45.0%
! TTGGTGGGTAGAAATGCAAC+TGG + chr5_2:8952438-8952457 None:intergenic 45.0%
TTCTACCCACCAATTGAAGG+AGG - chr5_2:8952445-8952464 Msa0755150:intron 45.0%
TCTACCCACCAATTGAAGGA+GGG - chr5_2:8952446-8952465 Msa0755150:intron 45.0%
! ACTAGTCTCCCTCCTTCAAT+TGG + chr5_2:8952457-8952476 None:intergenic 45.0%
AATTGAAGGAGGGAGACTAG+TGG - chr5_2:8952456-8952475 Msa0755150:intron 45.0%
! GCTTGGTCTCTTGTCTTTTC+TGG - chr5_2:8952792-8952811 Msa0755150:intron 45.0%
! GCATCGACCTTGATTGTACT+TGG + chr5_2:8952825-8952844 None:intergenic 45.0%
ACAACATCCTCAGTTCCTGA+TGG + chr5_2:8952857-8952876 None:intergenic 45.0%
AGATACCTTAGCCAACAGTG+TGG - chr5_2:8952913-8952932 Msa0755150:CDS 45.0%
! TTTAGCCACACTGTTGGCTA+AGG + chr5_2:8952921-8952940 None:intergenic 45.0%
CACAAGTTTAGCCACACTGT+TGG + chr5_2:8952927-8952946 None:intergenic 45.0%
CAACAGTGTGGCTAAACTTG+TGG - chr5_2:8952925-8952944 Msa0755150:exon 45.0%
!!! TAAAATTTTAAAAAATCAAT+TGG + chr5_2:8952676-8952695 None:intergenic 5.0%
TGAAGCAAAGTCGTCGACGA+CGG + chr5_2:8948463-8948482 None:intergenic 50.0%
! GAATGGGTTTACTGTGGTGG+CGG + chr5_2:8948506-8948525 None:intergenic 50.0%
!! GTAGGAGTGAAGGTGTCGTA+TGG - chr5_2:8948917-8948936 Msa0755150:intron 50.0%
!! TGCATCGATTCTGTCGTCGA+CGG - chr5_2:8948961-8948980 Msa0755150:intron 50.0%
CAAGGAGCAAAGCGAAAGGT+TGG + chr5_2:8949377-8949396 None:intergenic 50.0%
TGGTCAAGGAGCAAAGCGAA+AGG + chr5_2:8949381-8949400 None:intergenic 50.0%
GGTGGTCGAATCACTAGTAG+AGG + chr5_2:8949427-8949446 None:intergenic 50.0%
!! TTGAAGGACTTGTTGGCTGG+GGG + chr5_2:8949548-8949567 None:intergenic 50.0%
AGGGCATGATGAGTGTGAAG+TGG - chr5_2:8949729-8949748 Msa0755150:CDS 50.0%
CACGCAGTATGCAACATGTG+AGG + chr5_2:8949874-8949893 None:intergenic 50.0%
!! GGATTCCGTTTGATGGGTTC+AGG - chr5_2:8950427-8950446 Msa0755150:intron 50.0%
GTGGATGGAGCTAATGGTGT+TGG - chr5_2:8950944-8950963 Msa0755150:CDS 50.0%
! GATGGAGCTAATGGTGTTGG+TGG - chr5_2:8950947-8950966 Msa0755150:CDS 50.0%
AAAGAGAAGGTTGCTCCACG+CGG - chr5_2:8951082-8951101 Msa0755150:intron 50.0%
!! TCTTTAGAACCAAAGCCGCG+TGG + chr5_2:8951100-8951119 None:intergenic 50.0%
! TGCAGGTGTGCTAGTTTGGA+TGG - chr5_2:8951366-8951385 Msa0755150:intron 50.0%
GTTTGGATGGAGATGCTGAC+CGG - chr5_2:8951379-8951398 Msa0755150:intron 50.0%
! GCAGTAGGAGATGCTTTGAG+TGG - chr5_2:8951922-8951941 Msa0755150:intron 50.0%
! TTGATGGCTTCCTGCAAACC+AGG + chr5_2:8952331-8952350 None:intergenic 50.0%
GGCCTTGAGGTCAAAATGAG+TGG + chr5_2:8952417-8952436 None:intergenic 50.0%
GTCTCCCTCCTTCAATTGGT+GGG + chr5_2:8952453-8952472 None:intergenic 50.0%
AGTCTCCCTCCTTCAATTGG+TGG + chr5_2:8952454-8952473 None:intergenic 50.0%
! CGATGCTTTGTTCGACCATC+AGG - chr5_2:8952839-8952858 Msa0755150:intron 50.0%
TGTTCGACCATCAGGAACTG+AGG - chr5_2:8952847-8952866 Msa0755150:intron 50.0%
GTCGTCGACGACTTTGCTTC+AGG - chr5_2:8948462-8948481 Msa0755150:three_prime_UTR 55.0%
!! GTTTACTGTGGTGGCGGAAG+GGG + chr5_2:8948500-8948519 None:intergenic 55.0%
!! GGTTTACTGTGGTGGCGGAA+GGG + chr5_2:8948501-8948520 None:intergenic 55.0%
TCTCGCTTCTTGCTCCCTCA+AGG - chr5_2:8948761-8948780 Msa0755150:CDS 55.0%
!! GAAGGTGTCGTATGGTACGG+CGG - chr5_2:8948925-8948944 Msa0755150:intron 55.0%
!! AAGGTGTCGTATGGTACGGC+GGG - chr5_2:8948926-8948945 Msa0755150:intron 55.0%
TCGTCGACGGTGTACAGAGT+TGG - chr5_2:8948974-8948993 Msa0755150:intron 55.0%
TTGGGTGATTCCCATCTCCG+AGG - chr5_2:8949770-8949789 Msa0755150:CDS 55.0%
TGGGTGATTCCCATCTCCGA+GGG - chr5_2:8949771-8949790 Msa0755150:CDS 55.0%
ACATACTGAGTGGCACCCCT+CGG + chr5_2:8949790-8949809 None:intergenic 55.0%
GTCGGCCTGAACCCATCAAA+CGG + chr5_2:8950435-8950454 None:intergenic 55.0%
AACTGCGGCAAAGCACGTCT+TGG - chr5_2:8951534-8951553 Msa0755150:intron 55.0%
TCTACCTAGCAGGCAGCTCA+AGG - chr5_2:8952017-8952036 Msa0755150:intron 55.0%
ACTGTGGTTGTGAGTCCACC+TGG - chr5_2:8952310-8952329 Msa0755150:intron 55.0%
! TGTGAGTCCACCTGGTTTGC+AGG - chr5_2:8952318-8952337 Msa0755150:intron 55.0%
ATGGCTTCCTGCAAACCAGG+TGG + chr5_2:8952328-8952347 None:intergenic 55.0%
! ATATGCCGAAGCATCCACGC+AGG - chr5_2:8952883-8952902 Msa0755150:CDS 55.0%
AGCTTCCTGCGTGGATGCTT+CGG + chr5_2:8952891-8952910 None:intergenic 55.0%
!! GGGTTTACTGTGGTGGCGGA+AGG + chr5_2:8948502-8948521 None:intergenic 60.0%
GGGTGATTCCCATCTCCGAG+GGG - chr5_2:8949772-8949791 Msa0755150:CDS 60.0%
GGGAGAGACACAAGGCCAAG+TGG - chr5_2:8950468-8950487 Msa0755150:intron 60.0%
TGGAGCTGTTGCGTCCGACA+TGG - chr5_2:8950629-8950648 Msa0755150:CDS 60.0%
GGAGCTGTTGCGTCCGACAT+GGG - chr5_2:8950630-8950649 Msa0755150:CDS 60.0%
AAGGTTGCTCCACGCGGCTT+TGG - chr5_2:8951088-8951107 Msa0755150:intron 60.0%
CTGACCTTGAGCTGCCTGCT+AGG + chr5_2:8952024-8952043 None:intergenic 60.0%
GGTATCTGCAGCTTCCTGCG+TGG + chr5_2:8952900-8952919 None:intergenic 60.0%
GAGTGGCACCCCTCGGAGAT+GGG + chr5_2:8949783-8949802 None:intergenic 65.0%
TGAGTGGCACCCCTCGGAGA+TGG + chr5_2:8949784-8949803 None:intergenic 65.0%
GGGCATAAAGGCGGCGGAGC+AGG - chr5_2:8950701-8950720 Msa0755150:CDS 70.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 8948460 8953205 8948460 ID=Msa0755150;Name=Msa0755150
chr5_2 mRNA 8948460 8953205 8948460 ID=Msa0755150-mRNA-1;Parent=Msa0755150;Name=Msa0755150-mRNA-1;_AED=0.13;_eAED=0.13;_QI=48|1|1|1|0.88|0.8|10|241|555
chr5_2 exon 8948460 8948843 8948460 ID=Msa0755150-mRNA-1:exon:4130;Parent=Msa0755150-mRNA-1
chr5_2 exon 8949304 8949400 8949304 ID=Msa0755150-mRNA-1:exon:4129;Parent=Msa0755150-mRNA-1
chr5_2 exon 8949627 8949802 8949627 ID=Msa0755150-mRNA-1:exon:4128;Parent=Msa0755150-mRNA-1
chr5_2 exon 8949882 8950294 8949882 ID=Msa0755150-mRNA-1:exon:4127;Parent=Msa0755150-mRNA-1
chr5_2 exon 8950534 8950785 8950534 ID=Msa0755150-mRNA-1:exon:4126;Parent=Msa0755150-mRNA-1
chr5_2 exon 8950911 8951053 8950911 ID=Msa0755150-mRNA-1:exon:4125;Parent=Msa0755150-mRNA-1
chr5_2 exon 8951147 8951266 8951147 ID=Msa0755150-mRNA-1:exon:4124;Parent=Msa0755150-mRNA-1
chr5_2 exon 8952482 8952744 8952482 ID=Msa0755150-mRNA-1:exon:4123;Parent=Msa0755150-mRNA-1
chr5_2 exon 8952883 8952967 8952883 ID=Msa0755150-mRNA-1:exon:4122;Parent=Msa0755150-mRNA-1
chr5_2 exon 8953182 8953205 8953182 ID=Msa0755150-mRNA-1:exon:4121;Parent=Msa0755150-mRNA-1
chr5_2 five_prime_UTR 8953182 8953205 8953182 ID=Msa0755150-mRNA-1:five_prime_utr;Parent=Msa0755150-mRNA-1
chr5_2 five_prime_UTR 8952944 8952967 8952944 ID=Msa0755150-mRNA-1:five_prime_utr;Parent=Msa0755150-mRNA-1
chr5_2 CDS 8952883 8952943 8952883 ID=Msa0755150-mRNA-1:cds;Parent=Msa0755150-mRNA-1
chr5_2 CDS 8952482 8952744 8952482 ID=Msa0755150-mRNA-1:cds;Parent=Msa0755150-mRNA-1
chr5_2 CDS 8951147 8951266 8951147 ID=Msa0755150-mRNA-1:cds;Parent=Msa0755150-mRNA-1
chr5_2 CDS 8950911 8951053 8950911 ID=Msa0755150-mRNA-1:cds;Parent=Msa0755150-mRNA-1
chr5_2 CDS 8950534 8950785 8950534 ID=Msa0755150-mRNA-1:cds;Parent=Msa0755150-mRNA-1
chr5_2 CDS 8949882 8950294 8949882 ID=Msa0755150-mRNA-1:cds;Parent=Msa0755150-mRNA-1
chr5_2 CDS 8949627 8949802 8949627 ID=Msa0755150-mRNA-1:cds;Parent=Msa0755150-mRNA-1
chr5_2 CDS 8949304 8949400 8949304 ID=Msa0755150-mRNA-1:cds;Parent=Msa0755150-mRNA-1
chr5_2 CDS 8948701 8948843 8948701 ID=Msa0755150-mRNA-1:cds;Parent=Msa0755150-mRNA-1
chr5_2 three_prime_UTR 8948460 8948700 8948460 ID=Msa0755150-mRNA-1:three_prime_utr;Parent=Msa0755150-mRNA-1
Gene Sequence

>Msa0755150

ATGGATGAAGAACAAAAATCTCTGCTTCTAGAATCTTCTTCTCGCTTCTTGCTCCCTCAAGGAGTGAAGGTGTCGTATGGTACGGCGGGTTTTAGAGAAGATGCATCGATTCTGTCGTCGACGGTGTACAGAGTTGGAATTCTGGCGGCTCTGAGATCGTTGAAAACGCAATCGGTGATCGGAGTTATGATCACTGCTTCACATAATAAAATTTCTGATAATGGTGTTAAAATCGCTGATCCGAATGGGGGTATGTTGTCTCAAAATTGGGAACCGTTCGCTGACGAACTTGCAAATGCTCCTTCTCCTCAACAACTTCTTCAGTTGATAAATGAATTTGTTGAGAAAGAAAGGATTCCGTTTGATGGGTTCAGGCCGACTGAAATACTTTTGGGGAGAGACACAAGGCCAAGTGGAGAAGCTTTGCTTGAAGCTGCTAGACAAGGAGTCACTTCAATTGTTGGAGCTGTTGCGTCCGACATGGGCATTTTGACAACTCCACAACTACATTGGATGGTTCGTGCTAGAAATAAGGGCATAAAGGCGGCGGAGCAGGATTACTTCGAACAGCTAACCAGCTCATTCAGGTGCTTAATGGATTTGATCCCGACTGAGCGAAAAGTGTTTGATGGGGTGAATGACAAATTGGTTGTGGATGGAGCTAATGGTGTTGGTGGAGCAAAACTTCGAATTTTGCATAAATTGTTGAATGTGTTGGATATGGAGGTTCGAAATAGCAGTGATGACGAAGGTGTATTGAATGATGGAGTCGGTGCTGATTATGTGCAGAAAGAGAAGGTTGCTCCACGCGGCTTTGGTTCTAAAGATGCTGGCACAAGGTGTGCTAGTTTGGATGGAGATGCTGACCGGCTTGTTTATTTTTCAGTACCACCTGAAAGCAATTCTCAAATTGATCTTGTTGATGGGGACAAAATACTATCCCTGTTTGCTGTATTTATTAGGGAGCAACTAAGTTTGCTTAATGAGAAAGAAGATATAAAAAACTGCGGCAAAGCACGTCTTGGTATTGTACAAACTGCATATGCAAATGGAGCTTCTACTAATTACCTTAAAAATTTGGATCTCGAAGTCAATTTAACTCCCACTGGAGTGAAATATTTACATGAAAAAGCTGCTGAATTTGATATCGGTATATATTTTGAGGCAAATGGCCATGGAACTATCCTATTTTCGGAATCTTTCATAGAGTGGTTAGAGGTCAGAAGTAACAAGCTTTCTTCAGGATCCAAAGGATCAGAAGCAGAAAAGGCTGCTTTGAGATTATTGGCAGTCGGTAAGTTGATCAACCAAGCAGTAGGAGATGCTTTGAGTGGAGTGCTTTTGGTGGAAGTCATATTGAAGCACATGGGATGGTCAATACAGAGATGGAATGAACTTTATCTCGATCTACCTAGCAGGCAGCTCAAGGTTAAAGTTGCTGACCGAACATCCGTAGTTACAGCAAATGCAGAAACTGTGGTTGTGAGTCCACCTGGTTTGCAGGAAGCCATCAATGCAGAAACTTCCAAGTACAATCAAGGTCGATGCTTTGTTCGACCATCAGGAACTGAGGATGTTGTTCGCGTATATGCCGAAGCATCCACGCAGGAAGCTGCAGATACCTTAGCCAACAGTGTGGCTAAACTTGTGGATCAATTCTTAGGTTAG

Protein sequence

>Msa0755150

MDEEQKSLLLESSSRFLLPQGVKVSYGTAGFREDASILSSTVYRVGILAALRSLKTQSVIGVMITASHNKISDNGVKIADPNGGMLSQNWEPFADELANAPSPQQLLQLINEFVEKERIPFDGFRPTEILLGRDTRPSGEALLEAARQGVTSIVGAVASDMGILTTPQLHWMVRARNKGIKAAEQDYFEQLTSSFRCLMDLIPTERKVFDGVNDKLVVDGANGVGGAKLRILHKLLNVLDMEVRNSSDDEGVLNDGVGADYVQKEKVAPRGFGSKDAGTRCASLDGDADRLVYFSVPPESNSQIDLVDGDKILSLFAVFIREQLSLLNEKEDIKNCGKARLGIVQTAYANGASTNYLKNLDLEVNLTPTGVKYLHEKAAEFDIGIYFEANGHGTILFSESFIEWLEVRSNKLSSGSKGSEAEKAALRLLAVGKLINQAVGDALSGVLLVEVILKHMGWSIQRWNELYLDLPSRQLKVKVADRTSVVTANAETVVVSPPGLQEAINAETSKYNQGRCFVRPSGTEDVVRVYAEASTQEAADTLANSVAKLVDQFLG*