Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1449860 | sp|Q9LHD1|AB15B_ARATH | 49.333 | 300 | 94 | 5 | 1 | 243 | 1 | 299 | 3.58e-79 | 262 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1449860 | A0A1S2XH96 | 66.558 | 308 | 44 | 4 | 1 | 249 | 1 | 308 | 8.04e-120 | 380 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002680 | Msa1449860 | 0.805807 | 1.117082e-49 | -8.615850e-47 |
| Msa0011930 | Msa1449860 | 0.809848 | 1.544735e-50 | -8.615850e-47 |
| Msa0014570 | Msa1449860 | 0.812941 | 3.289711e-51 | -8.615850e-47 |
| Msa0032320 | Msa1449860 | 0.809734 | 1.634783e-50 | -8.615850e-47 |
| Msa0035120 | Msa1449860 | 0.822310 | 2.536332e-53 | -8.615850e-47 |
| Msa0052870 | Msa1449860 | 0.831010 | 2.126491e-55 | -8.615850e-47 |
| Msa0054530 | Msa1449860 | 0.800313 | 1.528154e-48 | -8.615850e-47 |
| Msa0056450 | Msa1449860 | 0.830899 | 2.264706e-55 | -8.615850e-47 |
| Msa0061340 | Msa1449860 | 0.801854 | 7.397087e-49 | -8.615850e-47 |
| Msa0065680 | Msa1449860 | -0.800174 | 1.631126e-48 | -8.615850e-47 |
| Msa0089980 | Msa1449860 | 0.819054 | 1.420463e-52 | -8.615850e-47 |
| Msa0090010 | Msa1449860 | 0.813354 | 2.671127e-51 | -8.615850e-47 |
| Msa0106620 | Msa1449860 | 0.804096 | 2.544647e-49 | -8.615850e-47 |
| Msa0106710 | Msa1449860 | 0.800017 | 1.755831e-48 | -8.615850e-47 |
| Msa0108390 | Msa1449860 | 0.829120 | 6.147675e-55 | -8.615850e-47 |
| Msa0108410 | Msa1449860 | 0.801607 | 8.313261e-49 | -8.615850e-47 |
| Msa0116790 | Msa1449860 | 0.819132 | 1.363564e-52 | -8.615850e-47 |
| Msa1371520 | Msa1449860 | 0.837048 | 6.538793e-57 | -8.615850e-47 |
| Msa1393820 | Msa1449860 | 0.809280 | 2.046050e-50 | -8.615850e-47 |
| Msa1401270 | Msa1449860 | 0.813116 | 3.012626e-51 | -8.615850e-47 |
| Msa1418240 | Msa1449860 | 0.807865 | 4.101334e-50 | -8.615850e-47 |
| Msa1420250 | Msa1449860 | 0.816718 | 4.785702e-52 | -8.615850e-47 |
| Msa1439610 | Msa1449860 | 0.800581 | 1.347943e-48 | -8.615850e-47 |
| Msa1449860 | Msa1453360 | 0.806768 | 7.005695e-50 | -8.615850e-47 |
| Msa1449860 | Msa1456230 | 0.801823 | 7.506968e-49 | -8.615850e-47 |
| Msa1449860 | Msa1467000 | 0.823927 | 1.064371e-53 | -8.615850e-47 |
| Msa0626270 | Msa1449860 | 0.820887 | 5.408451e-53 | -8.615850e-47 |
| Msa0657660 | Msa1449860 | 0.811152 | 8.076989e-51 | -8.615850e-47 |
| Msa0661320 | Msa1449860 | 0.827954 | 1.175774e-54 | -8.615850e-47 |
| Msa0664540 | Msa1449860 | 0.831576 | 1.543854e-55 | -8.615850e-47 |
| Msa0689760 | Msa1449860 | 0.820150 | 7.983493e-53 | -8.615850e-47 |
| Msa0698100 | Msa1449860 | 0.804951 | 1.687716e-49 | -8.615850e-47 |
| Msa0698290 | Msa1449860 | 0.821680 | 3.550145e-53 | -8.615850e-47 |
| Msa0702720 | Msa1449860 | 0.814397 | 1.572809e-51 | -8.615850e-47 |
| Msa0716860 | Msa1449860 | 0.803183 | 3.937224e-49 | -8.615850e-47 |
| Msa0751260 | Msa1449860 | 0.811794 | 5.859207e-51 | -8.615850e-47 |
| Msa0757800 | Msa1449860 | 0.808996 | 2.353200e-50 | -8.615850e-47 |
| Msa0795070 | Msa1449860 | 0.812628 | 3.852856e-51 | -8.615850e-47 |
| Msa0800700 | Msa1449860 | 0.804378 | 2.223338e-49 | -8.615850e-47 |
| Msa0133720 | Msa1449860 | 0.801229 | 9.935714e-49 | -8.615850e-47 |
| Msa0133820 | Msa1449860 | 0.809385 | 1.942497e-50 | -8.615850e-47 |
| Msa0138360 | Msa1449860 | 0.837119 | 6.274040e-57 | -8.615850e-47 |
| Msa0140240 | Msa1449860 | 0.822785 | 1.967477e-53 | -8.615850e-47 |
| Msa0147980 | Msa1449860 | 0.815241 | 1.022329e-51 | -8.615850e-47 |
| Msa0187030 | Msa1449860 | 0.818602 | 1.799239e-52 | -8.615850e-47 |
| Msa0191890 | Msa1449860 | 0.813798 | 2.132988e-51 | -8.615850e-47 |
| Msa0225220 | Msa1449860 | 0.803584 | 3.251378e-49 | -8.615850e-47 |
| Msa0225480 | Msa1449860 | 0.800682 | 1.284998e-48 | -8.615850e-47 |
| Msa0230370 | Msa1449860 | 0.806699 | 7.245954e-50 | -8.615850e-47 |
| Msa1258980 | Msa1449860 | 0.801636 | 8.198775e-49 | -8.615850e-47 |
| Msa1259640 | Msa1449860 | 0.808582 | 2.885504e-50 | -8.615850e-47 |
| Msa1285550 | Msa1449860 | 0.811460 | 6.923673e-51 | -8.615850e-47 |
| Msa1329790 | Msa1449860 | 0.807436 | 5.060712e-50 | -8.615850e-47 |
| Msa1330630 | Msa1449860 | 0.802429 | 5.635337e-49 | -8.615850e-47 |
| Msa0379610 | Msa1449860 | 0.807582 | 4.710056e-50 | -8.615850e-47 |
| Msa0395980 | Msa1449860 | 0.804831 | 1.788861e-49 | -8.615850e-47 |
| Msa0403660 | Msa1449860 | 0.829186 | 5.926307e-55 | -8.615850e-47 |
| Msa0432160 | Msa1449860 | 0.808829 | 2.555147e-50 | -8.615850e-47 |
| Msa0450400 | Msa1449860 | -0.803355 | 3.626708e-49 | -8.615850e-47 |
| Msa0476680 | Msa1449860 | 0.812330 | 4.477271e-51 | -8.615850e-47 |
| Msa0986510 | Msa1449860 | 0.809509 | 1.826837e-50 | -8.615850e-47 |
| Msa1028280 | Msa1449860 | 0.807374 | 5.215699e-50 | -8.615850e-47 |
| Msa1034500 | Msa1449860 | 0.820796 | 5.675608e-53 | -8.615850e-47 |
| Msa1050910 | Msa1449860 | 0.800915 | 1.152163e-48 | -8.615850e-47 |
| Msa1071770 | Msa1449860 | 0.815815 | 7.619548e-52 | -8.615850e-47 |
| Msa0279850 | Msa1449860 | 0.809000 | 2.348678e-50 | -8.615850e-47 |
| Msa0298410 | Msa1449860 | 0.801800 | 7.589000e-49 | -8.615850e-47 |
| Msa0305330 | Msa1449860 | 0.816593 | 5.105265e-52 | -8.615850e-47 |
| Msa0307570 | Msa1449860 | 0.822913 | 1.836843e-53 | -8.615850e-47 |
| Msa0312530 | Msa1449860 | 0.825040 | 5.821561e-54 | -8.615850e-47 |
| Msa0317970 | Msa1449860 | 0.800147 | 1.652124e-48 | -8.615850e-47 |
| Msa0322900 | Msa1449860 | 0.820379 | 7.075120e-53 | -8.615850e-47 |
| Msa0342010 | Msa1449860 | 0.818725 | 1.687330e-52 | -8.615850e-47 |
| Msa0358400 | Msa1449860 | 0.802202 | 6.273990e-49 | -8.615850e-47 |
| Msa0363400 | Msa1449860 | 0.806756 | 7.047930e-50 | -8.615850e-47 |
| Msa1158830 | Msa1449860 | 0.825848 | 3.747225e-54 | -8.615850e-47 |
| Msa1161810 | Msa1449860 | 0.800807 | 1.211781e-48 | -8.615850e-47 |
| Msa1211340 | Msa1449860 | 0.808027 | 3.789798e-50 | -8.615850e-47 |
| Msa0485240 | Msa1449860 | 0.806118 | 9.606890e-50 | -8.615850e-47 |
| Msa0521010 | Msa1449860 | 0.807908 | 4.016037e-50 | -8.615850e-47 |
| Msa0527190 | Msa1449860 | 0.836721 | 7.924775e-57 | -8.615850e-47 |
| Msa0531250 | Msa1449860 | 0.801255 | 9.813953e-49 | -8.615850e-47 |
| Msa0556010 | Msa1449860 | 0.804422 | 2.176660e-49 | -8.615850e-47 |
| Msa0574390 | Msa1449860 | 0.809122 | 2.211280e-50 | -8.615850e-47 |
| Msa0576680 | Msa1449860 | 0.818313 | 2.092523e-52 | -8.615850e-47 |
| Msa0579660 | Msa1449860 | 0.801722 | 7.873625e-49 | -8.615850e-47 |
| Msa0581690 | Msa1449860 | 0.831539 | 1.576074e-55 | -8.615850e-47 |
| Msa0601950 | Msa1449860 | 0.828744 | 7.584493e-55 | -8.615850e-47 |
| Msa0868160 | Msa1449860 | 0.825734 | 3.987672e-54 | -8.615850e-47 |
| Msa0870520 | Msa1449860 | 0.890711 | 7.692156e-74 | -8.615850e-47 |
| Msa0870540 | Msa1449860 | 0.884017 | 2.745089e-71 | -8.615850e-47 |
| Msa0870610 | Msa1449860 | 0.816317 | 5.886763e-52 | -8.615850e-47 |
| Msa0871720 | Msa1449860 | 0.809999 | 1.433221e-50 | -8.615850e-47 |
| Msa0903710 | Msa1449860 | 0.893900 | 4.083155e-75 | -8.615850e-47 |
| Msa0936380 | Msa1449860 | 0.881429 | 2.418458e-70 | -8.615850e-47 |
| Msa0973140 | Msa1449860 | 0.892721 | 1.222861e-74 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1449860 | MtrunA17_Chr6g0452041 | 62.500 | 312 | 59 | 2 | 1 | 254 | 1 | 312 | 4.67e-111 | 347 |
| Msa1449860 | MtrunA17_Chr6g0452141 | 62.300 | 313 | 59 | 5 | 1 | 254 | 1 | 313 | 1.41e-105 | 332 |
| Msa1449860 | MtrunA17_Chr6g0452091 | 63.675 | 234 | 46 | 2 | 59 | 253 | 7 | 240 | 1.51e-96 | 283 |
| Msa1449860 | MtrunA17_Chr6g0452171 | 97.403 | 154 | 4 | 0 | 101 | 254 | 159 | 312 | 9.16e-96 | 305 |
| Msa1449860 | MtrunA17_Chr6g0452171 | 94.949 | 99 | 5 | 0 | 1 | 99 | 1 | 99 | 1.51e-57 | 197 |
| Msa1449860 | MtrunA17_Chr6g0451881 | 57.051 | 312 | 76 | 3 | 1 | 254 | 1 | 312 | 4.16e-95 | 303 |
| Msa1449860 | MtrunA17_Chr6g0452051 | 86.928 | 153 | 20 | 0 | 101 | 253 | 80 | 232 | 9.97e-90 | 271 |
| Msa1449860 | MtrunA17_Chr6g0452111 | 86.928 | 153 | 20 | 0 | 101 | 253 | 166 | 318 | 5.86e-86 | 278 |
| Msa1449860 | MtrunA17_Chr6g0452111 | 76.596 | 94 | 22 | 0 | 6 | 99 | 13 | 106 | 3.19e-36 | 136 |
| Msa1449860 | MtrunA17_Chr6g0451911 | 65.241 | 187 | 57 | 1 | 67 | 253 | 133 | 311 | 6.08e-76 | 250 |
| Msa1449860 | MtrunA17_Chr6g0451911 | 72.727 | 99 | 27 | 0 | 1 | 99 | 1 | 99 | 2.82e-42 | 153 |
| Msa1449860 | MtrunA17_Chr7g0233901 | 76.821 | 151 | 35 | 0 | 101 | 251 | 155 | 305 | 7.15e-75 | 246 |
| Msa1449860 | MtrunA17_Chr7g0233901 | 55.914 | 93 | 41 | 0 | 7 | 99 | 3 | 95 | 1.98e-26 | 107 |
| Msa1449860 | MtrunA17_Chr6g0486841 | 48.701 | 154 | 79 | 0 | 101 | 254 | 156 | 309 | 5.80e-45 | 161 |
| Msa1449860 | MtrunA17_Chr8g0374191 | 87.013 | 77 | 10 | 0 | 155 | 231 | 1 | 77 | 6.27e-43 | 140 |
| Msa1449860 | MtrunA17_Chr3g0123411 | 46.104 | 154 | 83 | 0 | 101 | 254 | 47 | 200 | 2.11e-41 | 151 |
| Msa1449860 | MtrunA17_Chr4g0041871 | 42.857 | 154 | 88 | 0 | 101 | 254 | 141 | 294 | 3.63e-37 | 139 |
| Msa1449860 | MtrunA17_Chr6g0453051 | 28.428 | 299 | 155 | 6 | 14 | 254 | 17 | 314 | 1.06e-26 | 108 |
| Msa1449860 | MtrunA17_Chr8g0366451 | 36.774 | 155 | 97 | 1 | 101 | 254 | 112 | 266 | 1.34e-24 | 101 |
| Msa1449860 | MtrunA17_Chr7g0264631 | 34.868 | 152 | 98 | 1 | 104 | 254 | 226 | 377 | 1.49e-23 | 99.8 |
| Msa1449860 | MtrunA17_Chr5g0410921 | 27.184 | 309 | 160 | 5 | 4 | 254 | 6 | 307 | 3.56e-23 | 98.6 |
| Msa1449860 | MtrunA17_Chr1g0156821 | 34.752 | 141 | 87 | 2 | 108 | 243 | 173 | 313 | 1.24e-22 | 97.1 |
| Msa1449860 | MtrunA17_Chr4g0069411 | 27.425 | 299 | 157 | 5 | 5 | 245 | 42 | 338 | 5.33e-20 | 89.4 |
| Msa1449860 | MtrunA17_Chr2g0285311 | 25.084 | 299 | 163 | 5 | 14 | 254 | 25 | 320 | 5.37e-20 | 89.4 |
| Msa1449860 | MtrunA17_Chr2g0285311 | 29.787 | 141 | 98 | 1 | 106 | 245 | 827 | 967 | 1.50e-11 | 64.3 |
| Msa1449860 | MtrunA17_Chr4g0069361 | 25.614 | 285 | 141 | 7 | 24 | 245 | 44 | 320 | 1.17e-19 | 88.2 |
| Msa1449860 | MtrunA17_Chr4g0069401 | 27.119 | 295 | 150 | 6 | 14 | 245 | 23 | 315 | 1.84e-19 | 87.4 |
| Msa1449860 | MtrunA17_Chr4g0069401 | 27.815 | 151 | 108 | 1 | 105 | 254 | 835 | 985 | 4.22e-14 | 71.6 |
| Msa1449860 | MtrunA17_Chr1g0180601 | 32.895 | 152 | 101 | 1 | 104 | 254 | 199 | 350 | 5.38e-19 | 86.3 |
| Msa1449860 | MtrunA17_Chr8g0344651 | 35.714 | 154 | 98 | 1 | 101 | 253 | 395 | 548 | 8.69e-19 | 85.5 |
| Msa1449860 | MtrunA17_Chr2g0285191 | 31.613 | 155 | 105 | 1 | 101 | 254 | 195 | 349 | 3.65e-18 | 84.0 |
| Msa1449860 | MtrunA17_Chr2g0285301 | 29.825 | 171 | 117 | 2 | 85 | 254 | 147 | 315 | 1.75e-16 | 79.0 |
| Msa1449860 | MtrunA17_Chr6g0481921 | 30.968 | 155 | 106 | 1 | 101 | 254 | 68 | 222 | 2.06e-16 | 78.6 |
| Msa1449860 | MtrunA17_Chr3g0119381 | 30.625 | 160 | 100 | 3 | 101 | 254 | 196 | 350 | 2.35e-16 | 78.6 |
| Msa1449860 | MtrunA17_Chr1g0194031 | 33.129 | 163 | 93 | 3 | 101 | 252 | 181 | 338 | 8.06e-16 | 76.6 |
| Msa1449860 | MtrunA17_Chr1g0193991 | 32.278 | 158 | 101 | 2 | 101 | 252 | 186 | 343 | 6.68e-15 | 74.3 |
| Msa1449860 | MtrunA17_Chr4g0069351 | 29.801 | 151 | 95 | 2 | 101 | 245 | 175 | 320 | 3.29e-13 | 69.3 |
| Msa1449860 | MtrunA17_Chr4g0069351 | 27.152 | 151 | 109 | 1 | 105 | 254 | 837 | 987 | 4.31e-13 | 68.9 |
| Msa1449860 | MtrunA17_Chr3g0138211 | 28.205 | 312 | 157 | 7 | 5 | 252 | 42 | 350 | 5.16e-13 | 68.6 |
| Msa1449860 | MtrunA17_Chr4g0039821 | 28.571 | 126 | 89 | 1 | 108 | 232 | 838 | 963 | 1.99e-12 | 67.0 |
| Msa1449860 | MtrunA17_Chr4g0039821 | 27.397 | 146 | 105 | 1 | 101 | 245 | 173 | 318 | 4.50e-12 | 65.9 |
| Msa1449860 | MtrunA17_Chr1g0212701 | 25.806 | 155 | 114 | 1 | 101 | 254 | 199 | 353 | 4.42e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1449860 | AT3G28415.1 | 51.389 | 288 | 89 | 2 | 16 | 253 | 2 | 288 | 6.15e-89 | 286 |
| Msa1449860 | AT3G28345.1 | 49.333 | 300 | 94 | 5 | 1 | 243 | 1 | 299 | 3.63e-80 | 262 |
| Msa1449860 | AT3G28415.2 | 68.627 | 153 | 48 | 0 | 101 | 253 | 144 | 296 | 4.32e-68 | 228 |
| Msa1449860 | AT3G28415.2 | 50.000 | 84 | 41 | 1 | 16 | 99 | 2 | 84 | 5.13e-18 | 83.6 |
| Msa1449860 | AT3G28360.1 | 60.000 | 185 | 64 | 2 | 70 | 253 | 121 | 296 | 2.15e-67 | 226 |
| Msa1449860 | AT3G28360.1 | 51.190 | 84 | 40 | 1 | 16 | 99 | 2 | 84 | 2.68e-20 | 90.5 |
| Msa1449860 | AT3G28380.1 | 56.989 | 186 | 70 | 2 | 70 | 254 | 134 | 310 | 7.69e-67 | 224 |
| Msa1449860 | AT3G28380.1 | 52.525 | 99 | 45 | 2 | 1 | 99 | 1 | 97 | 2.01e-23 | 99.8 |
| Msa1449860 | AT3G28390.1 | 57.297 | 185 | 69 | 2 | 70 | 253 | 122 | 297 | 5.38e-66 | 222 |
| Msa1449860 | AT3G28390.1 | 50.000 | 86 | 38 | 2 | 16 | 99 | 3 | 85 | 1.67e-20 | 90.9 |
| Msa1449860 | AT3G28860.1 | 28.710 | 310 | 160 | 7 | 5 | 254 | 8 | 316 | 2.13e-28 | 114 |
| Msa1449860 | AT2G36910.1 | 37.500 | 152 | 94 | 1 | 104 | 254 | 168 | 319 | 4.25e-24 | 101 |
| Msa1449860 | AT4G25960.1 | 35.484 | 155 | 99 | 1 | 101 | 254 | 198 | 352 | 2.35e-23 | 99.4 |
| Msa1449860 | AT1G27940.1 | 32.847 | 137 | 91 | 1 | 110 | 245 | 177 | 313 | 4.26e-21 | 92.8 |
| Msa1449860 | AT1G28010.1 | 24.648 | 284 | 155 | 5 | 20 | 245 | 32 | 314 | 5.67e-21 | 92.4 |
| Msa1449860 | AT1G10680.2 | 34.194 | 155 | 101 | 1 | 101 | 254 | 162 | 316 | 5.25e-20 | 89.7 |
| Msa1449860 | AT1G10680.1 | 34.194 | 155 | 101 | 1 | 101 | 254 | 162 | 316 | 5.55e-20 | 89.4 |
| Msa1449860 | AT4G01830.1 | 23.077 | 299 | 165 | 5 | 17 | 252 | 11 | 307 | 3.33e-18 | 84.3 |
| Msa1449860 | AT4G01830.1 | 28.276 | 145 | 103 | 1 | 108 | 251 | 789 | 933 | 5.72e-11 | 62.8 |
| Msa1449860 | AT5G46540.1 | 34.194 | 155 | 101 | 1 | 101 | 254 | 154 | 308 | 1.40e-17 | 82.4 |
| Msa1449860 | AT4G01820.2 | 24.138 | 290 | 150 | 5 | 14 | 240 | 3 | 285 | 1.63e-16 | 79.3 |
| Msa1449860 | AT4G01820.2 | 30.159 | 126 | 87 | 1 | 108 | 232 | 788 | 913 | 1.01e-13 | 70.9 |
| Msa1449860 | AT3G62150.3 | 32.117 | 137 | 92 | 1 | 110 | 245 | 209 | 345 | 1.98e-16 | 79.0 |
| Msa1449860 | AT3G62150.3 | 26.950 | 141 | 102 | 1 | 106 | 245 | 854 | 994 | 5.22e-12 | 65.9 |
| Msa1449860 | AT3G62150.2 | 32.117 | 137 | 92 | 1 | 110 | 245 | 209 | 345 | 1.98e-16 | 79.0 |
| Msa1449860 | AT3G62150.2 | 26.950 | 141 | 102 | 1 | 106 | 245 | 854 | 994 | 5.22e-12 | 65.9 |
| Msa1449860 | AT3G62150.1 | 32.117 | 137 | 92 | 1 | 110 | 245 | 209 | 345 | 1.98e-16 | 79.0 |
| Msa1449860 | AT3G62150.1 | 26.950 | 141 | 102 | 1 | 106 | 245 | 854 | 994 | 5.22e-12 | 65.9 |
| Msa1449860 | AT4G01820.1 | 24.138 | 290 | 150 | 5 | 14 | 240 | 3 | 285 | 2.40e-16 | 79.0 |
| Msa1449860 | AT4G01820.1 | 28.966 | 145 | 102 | 1 | 108 | 251 | 788 | 932 | 7.73e-14 | 71.2 |
| Msa1449860 | AT1G02530.2 | 24.172 | 302 | 165 | 6 | 2 | 241 | 7 | 306 | 6.87e-15 | 74.3 |
| Msa1449860 | AT1G02530.2 | 31.061 | 132 | 89 | 2 | 106 | 236 | 829 | 959 | 1.64e-13 | 70.5 |
| Msa1449860 | AT1G27940.2 | 35.417 | 96 | 61 | 1 | 151 | 245 | 4 | 99 | 9.39e-15 | 73.9 |
| Msa1449860 | AT2G47000.4 | 30.000 | 150 | 104 | 1 | 106 | 254 | 844 | 993 | 9.52e-15 | 73.9 |
| Msa1449860 | AT2G47000.4 | 32.117 | 137 | 92 | 1 | 110 | 245 | 190 | 326 | 1.55e-11 | 64.7 |
| Msa1449860 | AT2G47000.3 | 31.206 | 141 | 96 | 1 | 106 | 245 | 844 | 984 | 9.78e-15 | 73.9 |
| Msa1449860 | AT2G47000.3 | 32.117 | 137 | 92 | 1 | 110 | 245 | 190 | 326 | 1.24e-11 | 64.7 |
| Msa1449860 | AT2G47000.7 | 31.206 | 141 | 96 | 1 | 106 | 245 | 844 | 984 | 9.78e-15 | 73.9 |
| Msa1449860 | AT2G47000.7 | 32.117 | 137 | 92 | 1 | 110 | 245 | 190 | 326 | 1.24e-11 | 64.7 |
| Msa1449860 | AT1G02530.1 | 24.172 | 302 | 165 | 6 | 2 | 241 | 7 | 306 | 1.06e-14 | 73.9 |
| Msa1449860 | AT1G02530.1 | 31.061 | 132 | 89 | 2 | 106 | 236 | 829 | 959 | 2.13e-13 | 70.1 |
| Msa1449860 | AT2G47000.2 | 30.000 | 150 | 104 | 1 | 106 | 254 | 844 | 993 | 1.16e-14 | 73.9 |
| Msa1449860 | AT2G47000.2 | 32.117 | 137 | 92 | 1 | 110 | 245 | 190 | 326 | 1.44e-11 | 64.7 |
| Msa1449860 | AT2G47000.6 | 31.206 | 141 | 96 | 1 | 106 | 245 | 844 | 984 | 1.33e-14 | 73.6 |
| Msa1449860 | AT2G47000.6 | 32.117 | 137 | 92 | 1 | 110 | 245 | 190 | 326 | 1.36e-11 | 64.7 |
| Msa1449860 | AT2G47000.5 | 31.206 | 141 | 96 | 1 | 106 | 245 | 844 | 984 | 1.33e-14 | 73.6 |
| Msa1449860 | AT2G47000.5 | 32.117 | 137 | 92 | 1 | 110 | 245 | 190 | 326 | 1.36e-11 | 64.7 |
| Msa1449860 | AT2G47000.1 | 31.206 | 141 | 96 | 1 | 106 | 245 | 844 | 984 | 1.33e-14 | 73.6 |
| Msa1449860 | AT2G47000.1 | 32.117 | 137 | 92 | 1 | 110 | 245 | 190 | 326 | 1.36e-11 | 64.7 |
| Msa1449860 | AT2G39480.2 | 27.097 | 155 | 112 | 1 | 101 | 254 | 31 | 185 | 2.68e-13 | 69.7 |
| Msa1449860 | AT2G39480.1 | 27.097 | 155 | 112 | 1 | 101 | 254 | 211 | 365 | 2.76e-13 | 69.7 |
| Msa1449860 | AT1G02520.1 | 31.538 | 130 | 88 | 1 | 117 | 245 | 845 | 974 | 3.53e-13 | 69.3 |
| Msa1449860 | AT1G02520.1 | 24.028 | 283 | 145 | 5 | 21 | 240 | 43 | 318 | 5.90e-13 | 68.9 |
| Msa1449860 | AT1G02520.2 | 31.538 | 130 | 88 | 1 | 117 | 245 | 845 | 974 | 3.53e-13 | 69.3 |
| Msa1449860 | AT1G02520.2 | 24.028 | 283 | 145 | 5 | 21 | 240 | 43 | 318 | 5.90e-13 | 68.9 |
| Msa1449860 | AT1G02520.3 | 31.538 | 130 | 88 | 1 | 117 | 245 | 845 | 974 | 3.53e-13 | 69.3 |
| Msa1449860 | AT1G02520.3 | 24.028 | 283 | 145 | 5 | 21 | 240 | 43 | 318 | 5.90e-13 | 68.9 |
| Msa1449860 | AT4G18050.2 | 29.861 | 144 | 100 | 1 | 112 | 254 | 173 | 316 | 1.41e-11 | 64.7 |
| Msa1449860 | AT4G18050.1 | 29.861 | 144 | 100 | 1 | 112 | 254 | 163 | 306 | 1.49e-11 | 64.7 |
| Msa1449860 | AT3G55320.1 | 27.742 | 155 | 111 | 1 | 101 | 254 | 213 | 367 | 5.47e-11 | 63.2 |
| Msa1449860 | AT4G01830.2 | 27.891 | 147 | 105 | 1 | 106 | 251 | 553 | 699 | 6.28e-11 | 62.8 |
Find 57 sgRNAs with CRISPR-Local
Find 143 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTCTATTGGCACTATTTC+TGG | 0.102059 | tig0032731:-3028 | Msa1449860:CDS |
| GACCATTCTACTACCATAAA+AGG | 0.245083 | tig0032731:+1017 | Msa1449860:intergenic |
| TTCCAAAACCAAGCTTTAAA+TGG | 0.246713 | tig0032731:+3336 | Msa1449860:intergenic |
| AGAACTGTTTATTCCTTTGC+AGG | 0.284932 | tig0032731:-1171 | Msa1449860:CDS |
| AACATCAGCATGCATGAAAA+TGG | 0.293990 | tig0032731:+3144 | Msa1449860:intergenic |
| GTGGTACTACTTGTGATTCC+TGG | 0.310335 | tig0032731:-1291 | Msa1449860:CDS |
| CTTGTTGTTGTGGTGCTAAA+TGG | 0.314610 | tig0032731:-3230 | Msa1449860:exon |
| TAGTGGCATTTGCATTGTTA+TGG | 0.324913 | tig0032731:-1341 | Msa1449860:CDS |
| AACTGCTTTCTCTGATGCTT+TGG | 0.332967 | tig0032731:-1133 | Msa1449860:CDS |
| AACCATTTAAAGCTTGGTTT+TGG | 0.334540 | tig0032731:-3338 | Msa1449860:five_prime_UTR |
| CTATATTATATATTTGTACT+TGG | 0.347889 | tig0032731:+3313 | Msa1449860:intergenic |
| GTGATTCCTGGTTTCATGTA+TGG | 0.352910 | tig0032731:-1279 | Msa1449860:CDS |
| TTGGAAGGATCAGTGAAGTT+AGG | 0.360051 | tig0032731:-1114 | Msa1449860:CDS |
| CATGTATGGGAGAACTTTGA+TGG | 0.360286 | tig0032731:-1265 | Msa1449860:CDS |
| TATGGAGATTATCCATTGTT+GGG | 0.373289 | tig0032731:-1323 | Msa1449860:CDS |
| ATGAATGCATCTATGTTCAT+TGG | 0.395433 | tig0032731:-1372 | Msa1449860:CDS |
| AGCATCAGAGAAAGCAGTTA+TGG | 0.417813 | tig0032731:+1137 | Msa1449860:intergenic |
| ATCACAAGTAGTACCACAAA+AGG | 0.424007 | tig0032731:+1297 | Msa1449860:intergenic |
| TTGTTGTTGTGGTGCTAAAT+GGG | 0.431100 | tig0032731:-3229 | Msa1449860:exon |
| AGCAGAATTATGAACTCTAT+TGG | 0.431395 | tig0032731:-3040 | Msa1449860:CDS |
| TTTGGTTTGATTGGTGCCAT+TGG | 0.436052 | tig0032731:-3100 | Msa1449860:CDS |
| AAACAAAACCATTTAAAGCT+TGG | 0.436461 | tig0032731:-3344 | Msa1449860:five_prime_UTR |
| ACTACCATAAAAGGACATAA+AGG | 0.443452 | tig0032731:+1026 | Msa1449860:intergenic |
| TGATGGAATAATGACTCCTT+TGG | 0.451324 | tig0032731:-3077 | Msa1449860:CDS |
| TTATGGAGATTATCCATTGT+TGG | 0.453860 | tig0032731:-1324 | Msa1449860:CDS |
| TTGATTGGTGCCATTGGTGA+TGG | 0.462992 | tig0032731:-3094 | Msa1449860:CDS |
| TGATTCCTGGTTTCATGTAT+GGG | 0.466538 | tig0032731:-1278 | Msa1449860:CDS |
| AATTAAATAAAATGAATCAA+AGG | 0.483963 | tig0032731:+913 | Msa1449860:intergenic |
| ATTAAATAAAATGAATCAAA+GGG | 0.494684 | tig0032731:+914 | Msa1449860:intergenic |
| TGGGAGAACTTTGATGGGGT+TGG | 0.496689 | tig0032731:-1259 | Msa1449860:CDS |
| TTGAAACAAGGCTTAGCTAA+AGG | 0.499443 | tig0032731:-1090 | Msa1449860:CDS |
| TAGGAAGCAAGCAGCAAAAG+AGG | 0.500107 | tig0032731:+2317 | Msa1449860:intergenic |
| GCTTTCTCTGATGCTTTGGA+AGG | 0.507521 | tig0032731:-1129 | Msa1449860:CDS |
| TTAGCTAAAGGCTTGGCCAT+TGG | 0.507887 | tig0032731:-1078 | Msa1449860:CDS |
| ATGTATGGGAGAACTTTGAT+GGG | 0.517490 | tig0032731:-1264 | Msa1449860:CDS |
| GGCTTGGCCATTGGAAGCAA+TGG | 0.519232 | tig0032731:-1069 | Msa1449860:CDS |
| GGTGGTACTGTATTTGCAGT+TGG | 0.528121 | tig0032731:-976 | Msa1449860:CDS |
| TTGTGGTGCTAAATGGGTGG+TGG | 0.536291 | tig0032731:-3223 | Msa1449860:exon |
| TAAAATGAATCAAAGGGTAG+AGG | 0.542150 | tig0032731:+920 | Msa1449860:intergenic |
| GTCATGTATCATGGTGCTAA+AGG | 0.544383 | tig0032731:-997 | Msa1449860:CDS |
| GGAGCATCATTAGCACTTGG+TGG | 0.548521 | tig0032731:-955 | Msa1449860:CDS |
| AACAACACCATTGCTTCCAA+TGG | 0.557812 | tig0032731:+1062 | Msa1449860:intergenic |
| AGAGAAGAGTATAATCAAGC+TGG | 0.571329 | tig0032731:-1225 | Msa1449860:CDS |
| AGTAGAATGGTCATGTATCA+TGG | 0.585201 | tig0032731:-1006 | Msa1449860:CDS |
| ACAAGGCTTAGCTAAAGGCT+TGG | 0.587148 | tig0032731:-1085 | Msa1449860:CDS |
| GTTGGAGCATCATTAGCACT+TGG | 0.591295 | tig0032731:-958 | Msa1449860:CDS |
| TCACAAGTAGTACCACAAAA+GGG | 0.593308 | tig0032731:+1298 | Msa1449860:intergenic |
| CACAAAAGGGAACCCAACAA+TGG | 0.605285 | tig0032731:+1311 | Msa1449860:intergenic |
| AGAGAGAGTACTTGTTGTTG+TGG | 0.607348 | tig0032731:-3240 | Msa1449860:five_prime_UTR |
| GTTCATTGGAAGCTACATAG+TGG | 0.616555 | tig0032731:-1358 | Msa1449860:CDS |
| GTTCTCCCATACATGAAACC+AGG | 0.636211 | tig0032731:+1273 | Msa1449860:intergenic |
| CTTGTGATAAACAAAACCAA+AGG | 0.637019 | tig0032731:+3061 | Msa1449860:intergenic |
| ATGTATCATGGTGCTAAAGG+TGG | 0.640193 | tig0032731:-994 | Msa1449860:CDS |
| AGTCATTATTCCATCACCAA+TGG | 0.642008 | tig0032731:+3084 | Msa1449860:intergenic |
| TTGTTGTGGTGCTAAATGGG+TGG | 0.642908 | tig0032731:-3226 | Msa1449860:exon |
| GTGAAGTTAGGATTGAAACA+AGG | 0.689101 | tig0032731:-1102 | Msa1449860:CDS |
| TGTATGGGAGAACTTTGATG+GGG | 0.706108 | tig0032731:-1263 | Msa1449860:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCATATATATATTTAAATGA+AGG | + | tig0032731:1497-1516 | Msa1449860:intergenic | 10.0% |
| !!! | GTTTTTAATTTTCTTTAATT+TGG | - | tig0032731:1941-1960 | Msa1449860:intron | 10.0% |
| !!! | TAGAAAATTAAATTTAAAGT+AGG | + | tig0032731:2754-2773 | Msa1449860:intergenic | 10.0% |
| !! | ATTAAATAAAATGAATCAAA+GGG | + | tig0032731:3295-3314 | Msa1449860:intergenic | 10.0% |
| !! | AATTAAATAAAATGAATCAA+AGG | + | tig0032731:3296-3315 | Msa1449860:intergenic | 10.0% |
| !! | TATTATAAAAAATTGAATCA+TGG | - | tig0032731:3321-3340 | Msa1449860:five_prime_UTR | 10.0% |
| !! | CTATATTATATATTTGTACT+TGG | + | tig0032731:896-915 | Msa1449860:intergenic | 15.0% |
| !!! | TTTCTTTTTCTTAACATTAA+TGG | + | tig0032731:1026-1045 | Msa1449860:intergenic | 15.0% |
| !! | AATGTTAAGAAAAAGAAAAA+TGG | - | tig0032731:1028-1047 | Msa1449860:CDS | 15.0% |
| !! | GTAGAATTTATGTAATAAAA+AGG | + | tig0032731:1752-1771 | Msa1449860:intergenic | 15.0% |
| !! | TTCTAACTTAAAAACTATAT+AGG | - | tig0032731:2797-2816 | Msa1449860:intron | 15.0% |
| !!! | AAAAGAAAAATGGTTCTTTT+AGG | - | tig0032731:1038-1057 | Msa1449860:CDS | 20.0% |
| !!! | CTTCTATTTCTTTTGAAAAA+TGG | + | tig0032731:1381-1400 | Msa1449860:intergenic | 20.0% |
| !!! | GAAAATAAAAGTAGCTTTAT+AGG | - | tig0032731:1800-1819 | Msa1449860:intron | 20.0% |
| !!! | CTTTAATTTGGATATTGAAT+AGG | - | tig0032731:1953-1972 | Msa1449860:intron | 20.0% |
| !!! | ATATGCTTTAGAGATTAAAT+TGG | + | tig0032731:2007-2026 | Msa1449860:intergenic | 20.0% |
| !!! | TTTTAAATAGGGATGAAAAT+AGG | - | tig0032731:2472-2491 | Msa1449860:intron | 20.0% |
| !!! | TTTAAAGTAGGTATGTAAAT+AGG | + | tig0032731:2742-2761 | Msa1449860:intergenic | 20.0% |
| !! | AAACAAAACCATTTAAAGCT+TGG | - | tig0032731:862-881 | Msa1449860:three_prime_UTR | 25.0% |
| ! | TCAGAAAAATCTTACTCTAT+TGG | - | tig0032731:919-938 | Msa1449860:three_prime_UTR | 25.0% |
| !!! | TGTTCTTGATTGTTTTTTCA+TGG | - | tig0032731:1081-1100 | Msa1449860:CDS | 25.0% |
| !! | TTTTGTACATAACATCAATG+AGG | - | tig0032731:1216-1235 | Msa1449860:CDS | 25.0% |
| !!! | AAGTAGCTTTATAGGATATT+TGG | - | tig0032731:1808-1827 | Msa1449860:intron | 25.0% |
| !!! | TGCACTTGTTTTGTTATATT+TGG | - | tig0032731:1860-1879 | Msa1449860:intron | 25.0% |
| ! | ATTGAATAGGACTAAATTGA+TGG | - | tig0032731:1966-1985 | Msa1449860:intron | 25.0% |
| !! | TTACTTTAGGGATTTATGTT+AGG | - | tig0032731:2117-2136 | Msa1449860:intron | 25.0% |
| !! | TACTTTAGGGATTTATGTTA+GGG | - | tig0032731:2118-2137 | Msa1449860:intron | 25.0% |
| ! | ATTTATGTTAGGGACTATAT+TGG | - | tig0032731:2128-2147 | Msa1449860:intron | 25.0% |
| ! | TAAGAACATCTTGAATTACT+AGG | + | tig0032731:2403-2422 | Msa1449860:intergenic | 25.0% |
| ! | AAGTCAAACTTTGATCAAAT+AGG | - | tig0032731:2506-2525 | Msa1449860:intron | 25.0% |
| ! | AAACTTTGATCAAATAGGTT+AGG | - | tig0032731:2511-2530 | Msa1449860:intron | 25.0% |
| !!! | GTATATTTTTCTAACTTGTG+TGG | + | tig0032731:2633-2652 | Msa1449860:intergenic | 25.0% |
| !!! | AATATACTTCTGAAGTTACT+TGG | - | tig0032731:2646-2665 | Msa1449860:intron | 25.0% |
| !!! | ATATACTTCTGAAGTTACTT+GGG | - | tig0032731:2647-2666 | Msa1449860:intron | 25.0% |
| ! | GCCATTTATAAAATCTAACT+AGG | - | tig0032731:2708-2727 | Msa1449860:intron | 25.0% |
| !! | GCCTAGTTAGATTTTATAAA+TGG | + | tig0032731:2712-2731 | Msa1449860:intergenic | 25.0% |
| ! | GATGCATTCATCAAAAAATT+TGG | + | tig0032731:2825-2844 | Msa1449860:intergenic | 25.0% |
| !! | AACCATTTAAAGCTTGGTTT+TGG | - | tig0032731:868-887 | Msa1449860:three_prime_UTR | 30.0% |
| !! | TTCCAAAACCAAGCTTTAAA+TGG | + | tig0032731:873-892 | Msa1449860:intergenic | 30.0% |
| !!! | GATTGTTTTTTCATGGCTTT+TGG | - | tig0032731:1088-1107 | Msa1449860:CDS | 30.0% |
| CTTGTGATAAACAAAACCAA+AGG | + | tig0032731:1148-1167 | Msa1449860:intergenic | 30.0% | |
| AGCAGAATTATGAACTCTAT+TGG | - | tig0032731:1166-1185 | Msa1449860:CDS | 30.0% | |
| AGATTAATCTAATTGTCGAG+TGG | - | tig0032731:1309-1328 | Msa1449860:CDS | 30.0% | |
| !! | ATTGTTGAGATTTTGCTATG+AGG | - | tig0032731:1590-1609 | Msa1449860:intron | 30.0% |
| ! | AACATATGAAGCATTCACAT+TGG | - | tig0032731:1639-1658 | Msa1449860:intron | 30.0% |
| ! | ACATATGAAGCATTCACATT+GGG | - | tig0032731:1640-1659 | Msa1449860:intron | 30.0% |
| ! | AAACACTTCTTCGTTTTACT+AGG | + | tig0032731:1678-1697 | Msa1449860:intergenic | 30.0% |
| TCATAGAATCATTCATGCAA+AGG | + | tig0032731:1714-1733 | Msa1449860:intergenic | 30.0% | |
| TTCTATGATGAAAACATGTG+TGG | - | tig0032731:1726-1745 | Msa1449860:intron | 30.0% | |
| TAGTCCTTAACATCTTATAG+CGG | + | tig0032731:2080-2099 | Msa1449860:intergenic | 30.0% | |
| ! | ACGGATTTTCACTTACTTTA+GGG | - | tig0032731:2105-2124 | Msa1449860:intron | 30.0% |
| !!! | GTACCTTTTTTTACTTTGTG+AGG | - | tig0032731:2221-2240 | Msa1449860:intron | 30.0% |
| GTTCCTCACAAAGTAAAAAA+AGG | + | tig0032731:2227-2246 | Msa1449860:intergenic | 30.0% | |
| TTGAATTACTAGGCTATCAT+TGG | + | tig0032731:2393-2412 | Msa1449860:intergenic | 30.0% | |
| TCAAGATGTTCTTAGTGAAA+AGG | - | tig0032731:2409-2428 | Msa1449860:intron | 30.0% | |
| ATAGGTTAGGTCTGTTATAA+AGG | - | tig0032731:2524-2543 | Msa1449860:intron | 30.0% | |
| TCTGATCTATTACTTGACAT+AGG | - | tig0032731:2560-2579 | Msa1449860:intron | 30.0% | |
| !!! | TTTTTTAGAAACCTAGTGGT+CGG | + | tig0032731:2610-2629 | Msa1449860:intergenic | 30.0% |
| !! | TATACTTCTGAAGTTACTTG+GGG | - | tig0032731:2648-2667 | Msa1449860:intron | 30.0% |
| ATGAATGCATCTATGTTCAT+TGG | - | tig0032731:2834-2853 | Msa1449860:intron | 30.0% | |
| TTATGGAGATTATCCATTGT+TGG | - | tig0032731:2882-2901 | Msa1449860:intron | 30.0% | |
| TATGGAGATTATCCATTGTT+GGG | - | tig0032731:2883-2902 | Msa1449860:intron | 30.0% | |
| !!! | ATGGTGTTGTTTTTGCTATA+TGG | - | tig0032731:3156-3175 | Msa1449860:CDS | 30.0% |
| ACTACCATAAAAGGACATAA+AGG | + | tig0032731:3183-3202 | Msa1449860:intergenic | 30.0% | |
| TAAAATGAATCAAAGGGTAG+AGG | + | tig0032731:3289-3308 | Msa1449860:intergenic | 30.0% | |
| ! | TTGTTGTTGTGGTGCTAAAT+GGG | - | tig0032731:977-996 | Msa1449860:CDS | 35.0% |
| AACATCAGCATGCATGAAAA+TGG | + | tig0032731:1065-1084 | Msa1449860:intergenic | 35.0% | |
| !!! | TTCATGGCTTTTGGTTTGAT+TGG | - | tig0032731:1097-1116 | Msa1449860:CDS | 35.0% |
| AGTCATTATTCCATCACCAA+TGG | + | tig0032731:1125-1144 | Msa1449860:intergenic | 35.0% | |
| TGATGGAATAATGACTCCTT+TGG | - | tig0032731:1129-1148 | Msa1449860:CDS | 35.0% | |
| AACTCTATTGGCACTATTTC+TGG | - | tig0032731:1178-1197 | Msa1449860:CDS | 35.0% | |
| ATCTAATTGTCGAGTGGTAA+AGG | - | tig0032731:1315-1334 | Msa1449860:CDS | 35.0% | |
| ACAAAACTGAAAACTCACCT+AGG | + | tig0032731:1911-1930 | Msa1449860:intergenic | 35.0% | |
| !! | TATAGCGGATACTTAAGTGA+CGG | + | tig0032731:2065-2084 | Msa1449860:intergenic | 35.0% |
| GTATCCGCTATAAGATGTTA+AGG | - | tig0032731:2073-2092 | Msa1449860:intron | 35.0% | |
| GATGTTAAGGACTAACATGA+CGG | - | tig0032731:2086-2105 | Msa1449860:intron | 35.0% | |
| !! | GACGGATTTTCACTTACTTT+AGG | - | tig0032731:2104-2123 | Msa1449860:intron | 35.0% |
| ! | GGAGAGAAAGTGATATTTTG+TGG | - | tig0032731:2149-2168 | Msa1449860:intron | 35.0% |
| AATAGGGATGAAAATAGGTC+AGG | - | tig0032731:2477-2496 | Msa1449860:intron | 35.0% | |
| AGGTCTGTTATAAAGGTTCA+AGG | - | tig0032731:2531-2550 | Msa1449860:intron | 35.0% | |
| !!! | GTGGTTTTTTAGAAACCTAG+TGG | + | tig0032731:2614-2633 | Msa1449860:intergenic | 35.0% |
| !! | ATACTTCTGAAGTTACTTGG+GGG | - | tig0032731:2649-2668 | Msa1449860:intron | 35.0% |
| AGAAAGAATCTCCGCATTTA+AGG | - | tig0032731:2675-2694 | Msa1449860:intron | 35.0% | |
| GAAAGAATCTCCGCATTTAA+GGG | - | tig0032731:2676-2695 | Msa1449860:intron | 35.0% | |
| AGGTATGTAAATAGGCTTTC+AGG | + | tig0032731:2734-2753 | Msa1449860:intergenic | 35.0% | |
| TAGTGGCATTTGCATTGTTA+TGG | - | tig0032731:2865-2884 | Msa1449860:intron | 35.0% | |
| TCACAAGTAGTACCACAAAA+GGG | + | tig0032731:2911-2930 | Msa1449860:intergenic | 35.0% | |
| ATCACAAGTAGTACCACAAA+AGG | + | tig0032731:2912-2931 | Msa1449860:intergenic | 35.0% | |
| TGATTCCTGGTTTCATGTAT+GGG | - | tig0032731:2928-2947 | Msa1449860:intron | 35.0% | |
| ATGTATGGGAGAACTTTGAT+GGG | - | tig0032731:2942-2961 | Msa1449860:intron | 35.0% | |
| ! | AGAGAAGAGTATAATCAAGC+TGG | - | tig0032731:2981-3000 | Msa1449860:intron | 35.0% |
| AGAACTGTTTATTCCTTTGC+AGG | - | tig0032731:3035-3054 | Msa1449860:CDS | 35.0% | |
| GTGAAGTTAGGATTGAAACA+AGG | - | tig0032731:3104-3123 | Msa1449860:CDS | 35.0% | |
| TTGAAACAAGGCTTAGCTAA+AGG | - | tig0032731:3116-3135 | Msa1449860:CDS | 35.0% | |
| ! | TGGTCCTTTATGTCCTTTTA+TGG | - | tig0032731:3176-3195 | Msa1449860:CDS | 35.0% |
| ! | GTCCTTTTATGGTAGTAGAA+TGG | - | tig0032731:3187-3206 | Msa1449860:CDS | 35.0% |
| GACCATTCTACTACCATAAA+AGG | + | tig0032731:3192-3211 | Msa1449860:intergenic | 35.0% | |
| AGTAGAATGGTCATGTATCA+TGG | - | tig0032731:3200-3219 | Msa1449860:CDS | 35.0% | |
| !! | AGAGAGAGTACTTGTTGTTG+TGG | - | tig0032731:966-985 | Msa1449860:CDS | 40.0% |
| !! | CTTGTTGTTGTGGTGCTAAA+TGG | - | tig0032731:976-995 | Msa1449860:CDS | 40.0% |
| !! | TTTGGTTTGATTGGTGCCAT+TGG | - | tig0032731:1106-1125 | Msa1449860:CDS | 40.0% |
| TACTTTGTGAGGAACTTCAG+AGG | - | tig0032731:2232-2251 | Msa1449860:intron | 40.0% | |
| ACTTTGTGAGGAACTTCAGA+GGG | - | tig0032731:2233-2252 | Msa1449860:intron | 40.0% | |
| GAACTTCAGAGGGTTATTGT+TGG | - | tig0032731:2243-2262 | Msa1449860:intron | 40.0% | |
| GGTTATTGTTGGACAAGAAC+AGG | - | tig0032731:2254-2273 | Msa1449860:intron | 40.0% | |
| CCATGAGAAACCCTTAAATG+CGG | + | tig0032731:2689-2708 | Msa1449860:intergenic | 40.0% | |
| GTTCATTGGAAGCTACATAG+TGG | - | tig0032731:2848-2867 | Msa1449860:intron | 40.0% | |
| GTGATTCCTGGTTTCATGTA+TGG | - | tig0032731:2927-2946 | Msa1449860:intron | 40.0% | |
| CATGTATGGGAGAACTTTGA+TGG | - | tig0032731:2941-2960 | Msa1449860:intron | 40.0% | |
| TGTATGGGAGAACTTTGATG+GGG | - | tig0032731:2943-2962 | Msa1449860:intron | 40.0% | |
| AGCATCAGAGAAAGCAGTTA+TGG | + | tig0032731:3072-3091 | Msa1449860:intergenic | 40.0% | |
| AACTGCTTTCTCTGATGCTT+TGG | - | tig0032731:3073-3092 | Msa1449860:CDS | 40.0% | |
| TTGGAAGGATCAGTGAAGTT+AGG | - | tig0032731:3092-3111 | Msa1449860:CDS | 40.0% | |
| AACAACACCATTGCTTCCAA+TGG | + | tig0032731:3147-3166 | Msa1449860:intergenic | 40.0% | |
| ! | GTCATGTATCATGGTGCTAA+AGG | - | tig0032731:3209-3228 | Msa1449860:CDS | 40.0% |
| ! | ATGTATCATGGTGCTAAAGG+TGG | - | tig0032731:3212-3231 | Msa1449860:CDS | 40.0% |
| ! | TTGTTGTGGTGCTAAATGGG+TGG | - | tig0032731:980-999 | Msa1449860:CDS | 45.0% |
| !! | TTGATTGGTGCCATTGGTGA+TGG | - | tig0032731:1112-1131 | Msa1449860:CDS | 45.0% |
| TGTCGAGTGGTAAAGGATTC+AGG | - | tig0032731:1322-1341 | Msa1449860:CDS | 45.0% | |
| GATTGAGAGACACTCTCGAT+CGG | + | tig0032731:1551-1570 | Msa1449860:intergenic | 45.0% | |
| TAGGAAGCAAGCAGCAAAAG+AGG | + | tig0032731:1892-1911 | Msa1449860:intergenic | 45.0% | |
| !! | TCTTTTGCTGCTTGCTTCCT+AGG | - | tig0032731:1891-1910 | Msa1449860:intron | 45.0% |
| TAGGCTATCATTGGAGACAC+TGG | + | tig0032731:2384-2403 | Msa1449860:intergenic | 45.0% | |
| CCGCATTTAAGGGTTTCTCA+TGG | - | tig0032731:2686-2705 | Msa1449860:intron | 45.0% | |
| CACAAAAGGGAACCCAACAA+TGG | + | tig0032731:2898-2917 | Msa1449860:intergenic | 45.0% | |
| ! | CATTGTTGGGTTCCCTTTTG+TGG | - | tig0032731:2896-2915 | Msa1449860:intron | 45.0% |
| GTGGTACTACTTGTGATTCC+TGG | - | tig0032731:2915-2934 | Msa1449860:intron | 45.0% | |
| GTTCTCCCATACATGAAACC+AGG | + | tig0032731:2936-2955 | Msa1449860:intergenic | 45.0% | |
| ! | GGTTTTGCTTTCTCCTGCAA+AGG | + | tig0032731:3051-3070 | Msa1449860:intergenic | 45.0% |
| ! | GCTTTCTCTGATGCTTTGGA+AGG | - | tig0032731:3077-3096 | Msa1449860:CDS | 45.0% |
| ACAAGGCTTAGCTAAAGGCT+TGG | - | tig0032731:3121-3140 | Msa1449860:CDS | 45.0% | |
| TTAGCTAAAGGCTTGGCCAT+TGG | - | tig0032731:3128-3147 | Msa1449860:CDS | 45.0% | |
| GGTGGTACTGTATTTGCAGT+TGG | - | tig0032731:3230-3249 | Msa1449860:exon | 45.0% | |
| ! | GTTGGAGCATCATTAGCACT+TGG | - | tig0032731:3248-3267 | Msa1449860:five_prime_UTR | 45.0% |
| !!! | TATCAATTTTTATTTTAAAT+AGG | - | tig0032731:2460-2479 | Msa1449860:intron | 5.0% |
| !!! | ATCAATTTTTATTTTAAATA+GGG | - | tig0032731:2461-2480 | Msa1449860:intron | 5.0% |
| ! | TTGTGGTGCTAAATGGGTGG+TGG | - | tig0032731:983-1002 | Msa1449860:CDS | 50.0% |
| !! | CGAGAGTGTCTCTCAATCGT+TGG | - | tig0032731:1553-1572 | Msa1449860:intron | 50.0% |
| ! | GTGCTTCTTTTCCGACCACT+AGG | - | tig0032731:2596-2615 | Msa1449860:intron | 50.0% |
| TGGGAGAACTTTGATGGGGT+TGG | - | tig0032731:2947-2966 | Msa1449860:intron | 50.0% | |
| ! | GGAGCATCATTAGCACTTGG+TGG | - | tig0032731:3251-3270 | Msa1449860:five_prime_UTR | 50.0% |
| AGACACTCTCGATCGGTCGT+TGG | + | tig0032731:1544-1563 | Msa1449860:intergenic | 55.0% | |
| GGCTTGGCCATTGGAAGCAA+TGG | - | tig0032731:3137-3156 | Msa1449860:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0032731 | gene | 855 | 3373 | 855 | ID=Msa1449860;Name=Msa1449860 |
| tig0032731 | mRNA | 855 | 3373 | 855 | ID=Msa1449860-mRNA-1;Parent=Msa1449860;Name=Msa1449860-mRNA-1;_AED=0.12;_eAED=0.12;_QI=140|0.33|0.75|0.75|0.33|0.75|4|93|254 |
| tig0032731 | exon | 855 | 1409 | 855 | ID=Msa1449860-mRNA-1:exon:17166;Parent=Msa1449860-mRNA-1 |
| tig0032731 | exon | 1730 | 1734 | 1730 | ID=Msa1449860-mRNA-1:exon:17165;Parent=Msa1449860-mRNA-1 |
| tig0032731 | exon | 2316 | 2370 | 2316 | ID=Msa1449860-mRNA-1:exon:17164;Parent=Msa1449860-mRNA-1 |
| tig0032731 | exon | 2991 | 3373 | 2991 | ID=Msa1449860-mRNA-1:exon:17163;Parent=Msa1449860-mRNA-1 |
| tig0032731 | five_prime_UTR | 3234 | 3373 | 3234 | ID=Msa1449860-mRNA-1:five_prime_utr;Parent=Msa1449860-mRNA-1 |
| tig0032731 | CDS | 2991 | 3233 | 2991 | ID=Msa1449860-mRNA-1:cds;Parent=Msa1449860-mRNA-1 |
| tig0032731 | CDS | 2316 | 2370 | 2316 | ID=Msa1449860-mRNA-1:cds;Parent=Msa1449860-mRNA-1 |
| tig0032731 | CDS | 1730 | 1734 | 1730 | ID=Msa1449860-mRNA-1:cds;Parent=Msa1449860-mRNA-1 |
| tig0032731 | CDS | 948 | 1409 | 948 | ID=Msa1449860-mRNA-1:cds;Parent=Msa1449860-mRNA-1 |
| tig0032731 | three_prime_UTR | 855 | 947 | 855 | ID=Msa1449860-mRNA-1:three_prime_utr;Parent=Msa1449860-mRNA-1 |
| Gene Sequence |
| Protein sequence |
