AlfalfaGEDB | MS.gene62393

M. sativa cultivar XinJiangDaYe / MS.gene62393

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0097159 GO:0110165 GO:1901363
PFAM: PF01429.22

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene62393.t1	KEH32124.1	91	324	25	1	2	325	13	332	1.50E-81	313.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene62393.t1	Q9XI36	64.8	71	24	1	3	72	20	90	5.2e-19	96.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene62393.t1	G7JE44	91.3	323	24	1	3	325	36	354	1.1e-81	313.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049142	MS.gene62393	0.812215	4.74E-51	-1.69E-46
MS.gene049159	MS.gene62393	0.885847	5.71E-72	-1.69E-46
MS.gene049343	MS.gene62393	0.802891	4.52E-49	-1.69E-46
MS.gene049435	MS.gene62393	0.826608	2.47E-54	-1.69E-46
MS.gene049501	MS.gene62393	0.81672	4.78E-52	-1.69E-46
MS.gene049821	MS.gene62393	0.827063	1.92E-54	-1.69E-46
MS.gene049850	MS.gene62393	0.844083	9.41E-59	-1.69E-46
MS.gene050020	MS.gene62393	0.825031	5.85E-54	-1.69E-46
MS.gene050156	MS.gene62393	0.826052	3.35E-54	-1.69E-46
MS.gene050226	MS.gene62393	0.81395	1.97E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene62393.t1	MTR_4g114770	91.049	324	25	1	2	325	13	332	0.0	563
MS.gene62393.t1	MTR_4g114770	90.769	325	26	1	1	325	34	354	0.0	562
MS.gene62393.t1	MTR_0339s0010	91.589	321	23	1	5	325	1	317	0.0	561
MS.gene62393.t1	MTR_0339s0020	88.158	304	18	3	1	304	34	319	6.70e-165	462
MS.gene62393.t1	MTR_4g114785	88.439	173	16	1	1	173	34	202	9.05e-101	295
MS.gene62393.t1	MTR_6g060845	60.748	107	38	2	2	105	19	124	6.21e-39	134
MS.gene62393.t1	MTR_6g060860	56.489	131	53	4	3	132	36	163	6.80e-39	135
MS.gene62393.t1	MTR_6g060860	68.889	90	27	1	3	92	77	165	1.98e-38	135
MS.gene62393.t1	MTR_6g060845	61.321	106	37	2	3	105	36	140	5.27e-38	132
MS.gene62393.t1	MTR_6g060685	67.778	90	28	1	3	92	77	165	8.77e-37	131

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene62393.t1	AT1G15340	59.783	92	34	3	3	93	20	109	3.59e-28	112
MS.gene62393.t1	AT3G15790	58.511	94	35	3	3	94	20	111	2.99e-26	105
MS.gene62393.t1	AT3G15790	58.511	94	35	3	3	94	20	111	2.99e-26	105
MS.gene62393.t1	AT3G15790	58.511	94	35	3	3	94	20	111	2.99e-26	105

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Find 82 sgRNAs with CRISPR-Local

Find 104 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATAAAGAGGAAGATAAC+AGG	0.438541	8.2:-13821599	MS.gene62393:CDS
AAACATATCGGAATTTGATT+GGG	0.399027	8.2:-13822300	MS.gene62393:CDS
AAAGAGAATATCGACGACAA+AGG	0.633629	8.2:-13821924	MS.gene62393:CDS
AAAGATTGAACAGCCAGTGG+AGG	0.649841	8.2:-13821745	MS.gene62393:CDS
AAAGATTGGACAGCCAGCAG+AGG	0.672505	8.2:-13821823	MS.gene62393:CDS
AAAGATTGGACAGCCAGCGG+AGG	0.683425	8.2:-13821784	MS.gene62393:CDS
AAAGATTGGACTGCCAGCAG+AGG	0.649175	8.2:-13821862	MS.gene62393:CDS
AACAGGATCACCCGTGAGGC+TGG	0.424398	8.2:-13821582	MS.gene62393:CDS
AACATATCGGAATTTGATTG+GGG	0.594084	8.2:-13822299	MS.gene62393:CDS
AAGTATTTGAAAACTAACGG+TGG	0.726069	8.2:-13822326	MS.gene62393:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACATATCGGAATTTGATTG+GGG	-	chr8.2:13821847-13821866	MS.gene62393:CDS	30.0%
AAGTATTTGAAAACTAACGG+TGG	-	chr8.2:13821820-13821839	MS.gene62393:CDS	30.0%
ACAAAGCAAGAAGAAAAGAT+TGG	-	chr8.2:13822309-13822328	MS.gene62393:CDS	30.0%
ACGAAACAAGTAGAAAAGAT+CGG	-	chr8.2:13822426-13822445	MS.gene62393:intron	30.0%
ACTAAGCAAAACGAAAAGAT+TGG	-	chr8.2:13822348-13822367	MS.gene62393:CDS	30.0%
ACTTATATTGCAAAGGATGA+GGG	-	chr8.2:13822162-13822181	MS.gene62393:CDS	30.0%
CAAACATATCGGAATTTGAT+TGG	-	chr8.2:13821845-13821864	MS.gene62393:CDS	30.0%
CAATCAAATTCCGATATGTT+TGG	+	chr8.2:13821847-13821866	None:intergenic	30.0%
TACTTATATTGCAAAGGATG+AGG	-	chr8.2:13822161-13822180	MS.gene62393:CDS	30.0%
AAAGAGAATATCGACGACAA+AGG	-	chr8.2:13822222-13822241	MS.gene62393:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.2	gene	13821476	13822692	13821476	ID=MS.gene62393
chr8.2	mRNA	13821476	13822692	13821476	ID=MS.gene62393.t1;Parent=MS.gene62393
chr8.2	exon	13822681	13822692	13822681	ID=MS.gene62393.t1.exon1;Parent=MS.gene62393.t1
chr8.2	CDS	13822681	13822692	13822681	ID=cds.MS.gene62393.t1;Parent=MS.gene62393.t1
chr8.2	exon	13821476	13822441	13821476	ID=MS.gene62393.t1.exon2;Parent=MS.gene62393.t1
chr8.2	CDS	13821476	13822441	13821476	ID=cds.MS.gene62393.t1;Parent=MS.gene62393.t1

Gene Sequence

>MS.gene62393

ATGCTTAAAAATGTAACAACAAAATAATTTTTTGATTAAGAGAAGAGGAAGAAACATTTTTAATTGAGTATTCTCAAGGGTTTAATACACTGTTCTAATCATAAGACATAATTCTTATTTTATCTTTTAACATCATGAGCACCAAAGTCTTGTAAAAGTTAATAACTTGGAACAAGATCTTGTATGTGTAACAGTTGTTGATTTGTTGCATGCTATTGCGTGAGTATTAATAAATTATATTTCCTTTGCAGTTCTTTCCAAAAAAGTCAGGAACACCCAAGAAAAATGAGATTGTGTTCACTTCACCAACAGGAGAGGAGATCCGTACCAAAAGGCATTTGGAAAAGTATTTGAAAACTAACGGTGGCCCAAACATATCGGAATTTGATTGGGGCACTGGGGAGACTCCAAGAAGATCATCGAGAATTGTTGAGAAGGTCAAGGCAGCTCCTCCAGCAGAGCCAAAAAGTGAGCCTCCTAAGAAACGTAGCAGAAAGTCATCAGCTTCAAAGAAAGAAGCTTCTGAGGACGAAGCAGAGGAGACAAAAGACGTGGAAATGCAAGAAGCTGGCGAAACTAAGGATGATAAGGATGTAGAGCCGGAAAAGGAAGTTGTTAACAAAAATGAAGATAAGAAGGGAGCAGAAGATGCTGATGTTAAAGAGTCCATTCAACCTGGAGAAACTACTTATATTGCAAAGGATGAGGGGAAATCCAACACTGCTGATGGAGATTTGCAAGCATCAAAAGAGAATATCGACGACAAAGGAGCTGAGGGGTCTGGAGTTGTTCAGAATAAGGATGAAGAAAAGATTGGACTGCCAGCAGAGGAGACAAAGCAAGAAGAAAAGATTGGACAGCCAGCAGAGGAGACTAAGCAAAACGAAAAGATTGGACAGCCAGCGGAGGAGACAAAGCAGGAGGAAAAGATTGAACAGCCAGTGGAGGAGACGAAACAAGTAGAAAAGATCGGACAGCCAGTGGAAGAGACGAAACAAGATGGTGGATCTGGGGAAGCAGAGAAATCTGAAGCTGCCCCTACTGCTGAGAAAACGGCTGAAGTGGAAGGCGAAAATAAAGAGGAAGATAACAGGATCACCCGTGAGGCTGGAGGAGAAACCAAGGAGAAAGACGCGACAAGAGTGCACGATGAAGCAAACTACAAGGTTCATGATATGAACAAGGCTGAATCAGAGGTGACTGTGAATGGAAGCTGA

Protein sequence

>MS.gene62393.t1

MLKNFFPKKSGTPKKNEIVFTSPTGEEIRTKRHLEKYLKTNGGPNISEFDWGTGETPRRSSRIVEKVKAAPPAEPKSEPPKKRSRKSSASKKEASEDEAEETKDVEMQEAGETKDDKDVEPEKEVVNKNEDKKGAEDADVKESIQPGETTYIAKDEGKSNTADGDLQASKENIDDKGAEGSGVVQNKDEEKIGLPAEETKQEEKIGQPAEETKQNEKIGQPAEETKQEEKIEQPVEETKQVEKIGQPVEETKQDGGSGEAEKSEAAPTAEKTAEVEGENKEEDNRITREAGGETKEKDATRVHDEANYKVHDMNKAESEVTVNGS