Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91907.t1 | XP_003613679.1 | 98.3 | 299 | 5 | 0 | 1 | 299 | 1 | 299 | 3.70E-164 | 587.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91907.t1 | G7KCI0 | 98.3 | 299 | 5 | 0 | 1 | 299 | 1 | 299 | 2.7e-164 | 587.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene91907 | 0.839132 | 1.90E-57 | -1.69E-46 |
| MS.gene049254 | MS.gene91907 | 0.816819 | 4.54E-52 | -1.69E-46 |
| MS.gene049404 | MS.gene91907 | 0.816381 | 5.70E-52 | -1.69E-46 |
| MS.gene049424 | MS.gene91907 | 0.807855 | 4.12E-50 | -1.69E-46 |
| MS.gene049435 | MS.gene91907 | 0.843022 | 1.81E-58 | -1.69E-46 |
| MS.gene049452 | MS.gene91907 | 0.811222 | 7.80E-51 | -1.69E-46 |
| MS.gene050227 | MS.gene91907 | 0.801956 | 7.05E-49 | -1.69E-46 |
| MS.gene050228 | MS.gene91907 | 0.804951 | 1.69E-49 | -1.69E-46 |
| MS.gene050303 | MS.gene91907 | 0.833874 | 4.15E-56 | -1.69E-46 |
| MS.gene050442 | MS.gene91907 | 0.853981 | 1.67E-61 | -1.69E-46 |
| MS.gene050559 | MS.gene91907 | 0.816354 | 5.77E-52 | -1.69E-46 |
| MS.gene050561 | MS.gene91907 | 0.821482 | 3.95E-53 | -1.69E-46 |
| MS.gene050562 | MS.gene91907 | 0.801204 | 1.01E-48 | -1.69E-46 |
| MS.gene050605 | MS.gene91907 | 0.806791 | 6.93E-50 | -1.69E-46 |
| MS.gene050680 | MS.gene91907 | 0.819999 | 8.64E-53 | -1.69E-46 |
| MS.gene050719 | MS.gene91907 | 0.828893 | 6.98E-55 | -1.69E-46 |
| MS.gene050721 | MS.gene91907 | 0.830342 | 3.10E-55 | -1.69E-46 |
| MS.gene050724 | MS.gene91907 | 0.827899 | 1.21E-54 | -1.69E-46 |
| MS.gene050750 | MS.gene91907 | 0.814653 | 1.38E-51 | -1.69E-46 |
| MS.gene050759 | MS.gene91907 | 0.802789 | 4.75E-49 | -1.69E-46 |
| MS.gene050780 | MS.gene91907 | 0.806254 | 8.99E-50 | -1.69E-46 |
| MS.gene050807 | MS.gene91907 | 0.805129 | 1.55E-49 | -1.69E-46 |
| MS.gene050815 | MS.gene91907 | 0.800961 | 1.13E-48 | -1.69E-46 |
| MS.gene050844 | MS.gene91907 | 0.823153 | 1.61E-53 | -1.69E-46 |
| MS.gene050905 | MS.gene91907 | -0.806529 | 7.87E-50 | -1.69E-46 |
| MS.gene050953 | MS.gene91907 | 0.83458 | 2.76E-56 | -1.69E-46 |
| MS.gene051181 | MS.gene91907 | 0.8199 | 9.11E-53 | -1.69E-46 |
| MS.gene051243 | MS.gene91907 | 0.804557 | 2.04E-49 | -1.69E-46 |
| MS.gene051349 | MS.gene91907 | 0.800614 | 1.33E-48 | -1.69E-46 |
| MS.gene051368 | MS.gene91907 | 0.805238 | 1.47E-49 | -1.69E-46 |
| MS.gene051574 | MS.gene91907 | 0.805118 | 1.56E-49 | -1.69E-46 |
| MS.gene051744 | MS.gene91907 | 0.82883 | 7.23E-55 | -1.69E-46 |
| MS.gene051975 | MS.gene91907 | 0.810535 | 1.10E-50 | -1.69E-46 |
| MS.gene052012 | MS.gene91907 | 0.854471 | 1.20E-61 | -1.69E-46 |
| MS.gene052108 | MS.gene91907 | 0.825754 | 3.95E-54 | -1.69E-46 |
| MS.gene052190 | MS.gene91907 | 0.806035 | 1.00E-49 | -1.69E-46 |
| MS.gene052323 | MS.gene91907 | 0.822646 | 2.12E-53 | -1.69E-46 |
| MS.gene052333 | MS.gene91907 | 0.824444 | 8.05E-54 | -1.69E-46 |
| MS.gene052426 | MS.gene91907 | 0.832948 | 7.06E-56 | -1.69E-46 |
| MS.gene052519 | MS.gene91907 | 0.84221 | 2.97E-58 | -1.69E-46 |
| MS.gene052584 | MS.gene91907 | 0.802463 | 5.54E-49 | -1.69E-46 |
| MS.gene052611 | MS.gene91907 | 0.80216 | 6.40E-49 | -1.69E-46 |
| MS.gene052773 | MS.gene91907 | 0.830278 | 3.21E-55 | -1.69E-46 |
| MS.gene052860 | MS.gene91907 | 0.810315 | 1.23E-50 | -1.69E-46 |
| MS.gene052863 | MS.gene91907 | 0.82024 | 7.62E-53 | -1.69E-46 |
| MS.gene052867 | MS.gene91907 | 0.803207 | 3.89E-49 | -1.69E-46 |
| MS.gene05288 | MS.gene91907 | 0.804789 | 1.82E-49 | -1.69E-46 |
| MS.gene052954 | MS.gene91907 | 0.848423 | 6.19E-60 | -1.69E-46 |
| MS.gene053006 | MS.gene91907 | 0.839276 | 1.75E-57 | -1.69E-46 |
| MS.gene053008 | MS.gene91907 | 0.847818 | 9.09E-60 | -1.69E-46 |
| MS.gene053080 | MS.gene91907 | 0.800777 | 1.23E-48 | -1.69E-46 |
| MS.gene053166 | MS.gene91907 | 0.828066 | 1.11E-54 | -1.69E-46 |
| MS.gene053216 | MS.gene91907 | 0.818845 | 1.58E-52 | -1.69E-46 |
| MS.gene053226 | MS.gene91907 | 0.844512 | 7.22E-59 | -1.69E-46 |
| MS.gene053931 | MS.gene91907 | 0.814133 | 1.80E-51 | -1.69E-46 |
| MS.gene05414 | MS.gene91907 | 0.802726 | 4.89E-49 | -1.69E-46 |
| MS.gene05415 | MS.gene91907 | 0.843379 | 1.45E-58 | -1.69E-46 |
| MS.gene054236 | MS.gene91907 | 0.809959 | 1.46E-50 | -1.69E-46 |
| MS.gene054405 | MS.gene91907 | 0.823124 | 1.64E-53 | -1.69E-46 |
| MS.gene054472 | MS.gene91907 | 0.823749 | 1.17E-53 | -1.69E-46 |
| MS.gene054479 | MS.gene91907 | 0.808116 | 3.63E-50 | -1.69E-46 |
| MS.gene054559 | MS.gene91907 | 0.811586 | 6.50E-51 | -1.69E-46 |
| MS.gene054651 | MS.gene91907 | 0.811357 | 7.29E-51 | -1.69E-46 |
| MS.gene054657 | MS.gene91907 | 0.863387 | 2.58E-64 | -1.69E-46 |
| MS.gene054658 | MS.gene91907 | 0.812682 | 3.75E-51 | -1.69E-46 |
| MS.gene054775 | MS.gene91907 | 0.810293 | 1.24E-50 | -1.69E-46 |
| MS.gene054994 | MS.gene91907 | 0.832526 | 8.99E-56 | -1.69E-46 |
| MS.gene05510 | MS.gene91907 | 0.858309 | 9.00E-63 | -1.69E-46 |
| MS.gene05517 | MS.gene91907 | 0.819174 | 1.33E-52 | -1.69E-46 |
| MS.gene055222 | MS.gene91907 | 0.805365 | 1.38E-49 | -1.69E-46 |
| MS.gene055227 | MS.gene91907 | 0.818677 | 1.73E-52 | -1.69E-46 |
| MS.gene055228 | MS.gene91907 | 0.803785 | 2.95E-49 | -1.69E-46 |
| MS.gene055230 | MS.gene91907 | 0.801124 | 1.04E-48 | -1.69E-46 |
| MS.gene055512 | MS.gene91907 | 0.80915 | 2.18E-50 | -1.69E-46 |
| MS.gene055623 | MS.gene91907 | 0.854549 | 1.14E-61 | -1.69E-46 |
| MS.gene055701 | MS.gene91907 | 0.835196 | 1.93E-56 | -1.69E-46 |
| MS.gene055778 | MS.gene91907 | 0.816669 | 4.91E-52 | -1.69E-46 |
| MS.gene055818 | MS.gene91907 | 0.875488 | 2.96E-68 | -1.69E-46 |
| MS.gene055841 | MS.gene91907 | 0.808465 | 3.06E-50 | -1.69E-46 |
| MS.gene055926 | MS.gene91907 | 0.814097 | 1.83E-51 | -1.69E-46 |
| MS.gene05604 | MS.gene91907 | 0.807059 | 6.08E-50 | -1.69E-46 |
| MS.gene056162 | MS.gene91907 | 0.809473 | 1.86E-50 | -1.69E-46 |
| MS.gene056173 | MS.gene91907 | 0.817994 | 2.47E-52 | -1.69E-46 |
| MS.gene056174 | MS.gene91907 | 0.822307 | 2.54E-53 | -1.69E-46 |
| MS.gene056366 | MS.gene91907 | 0.836989 | 6.77E-57 | -1.69E-46 |
| MS.gene056373 | MS.gene91907 | 0.80208 | 6.65E-49 | -1.69E-46 |
| MS.gene056506 | MS.gene91907 | 0.861822 | 7.83E-64 | -1.69E-46 |
| MS.gene056760 | MS.gene91907 | 0.816465 | 5.45E-52 | -1.69E-46 |
| MS.gene057026 | MS.gene91907 | 0.816394 | 5.66E-52 | -1.69E-46 |
| MS.gene057060 | MS.gene91907 | 0.85423 | 1.41E-61 | -1.69E-46 |
| MS.gene057140 | MS.gene91907 | 0.801605 | 8.32E-49 | -1.69E-46 |
| MS.gene057208 | MS.gene91907 | 0.849322 | 3.48E-60 | -1.69E-46 |
| MS.gene057314 | MS.gene91907 | 0.829422 | 5.20E-55 | -1.69E-46 |
| MS.gene057392 | MS.gene91907 | 0.818248 | 2.16E-52 | -1.69E-46 |
| MS.gene057394 | MS.gene91907 | 0.807497 | 4.91E-50 | -1.69E-46 |
| MS.gene057444 | MS.gene91907 | 0.802824 | 4.67E-49 | -1.69E-46 |
| MS.gene057598 | MS.gene91907 | 0.806179 | 9.33E-50 | -1.69E-46 |
| MS.gene057693 | MS.gene91907 | 0.83931 | 1.71E-57 | -1.69E-46 |
| MS.gene057855 | MS.gene91907 | 0.81123 | 7.77E-51 | -1.69E-46 |
| MS.gene057869 | MS.gene91907 | 0.833836 | 4.24E-56 | -1.69E-46 |
| MS.gene057915 | MS.gene91907 | 0.831594 | 1.53E-55 | -1.69E-46 |
| MS.gene05795 | MS.gene91907 | 0.821694 | 3.52E-53 | -1.69E-46 |
| MS.gene058009 | MS.gene91907 | 0.821143 | 4.72E-53 | -1.69E-46 |
| MS.gene058010 | MS.gene91907 | 0.823484 | 1.35E-53 | -1.69E-46 |
| MS.gene058037 | MS.gene91907 | 0.816038 | 6.79E-52 | -1.69E-46 |
| MS.gene058146 | MS.gene91907 | 0.835935 | 1.26E-56 | -1.69E-46 |
| MS.gene058399 | MS.gene91907 | 0.819247 | 1.28E-52 | -1.69E-46 |
| MS.gene05847 | MS.gene91907 | 0.80536 | 1.39E-49 | -1.69E-46 |
| MS.gene058548 | MS.gene91907 | 0.849853 | 2.48E-60 | -1.69E-46 |
| MS.gene058549 | MS.gene91907 | 0.830115 | 3.52E-55 | -1.69E-46 |
| MS.gene058595 | MS.gene91907 | 0.820637 | 6.17E-53 | -1.69E-46 |
| MS.gene058625 | MS.gene91907 | 0.814038 | 1.89E-51 | -1.69E-46 |
| MS.gene058783 | MS.gene91907 | 0.817013 | 4.11E-52 | -1.69E-46 |
| MS.gene058979 | MS.gene91907 | 0.848863 | 4.67E-60 | -1.69E-46 |
| MS.gene059161 | MS.gene91907 | 0.800608 | 1.33E-48 | -1.69E-46 |
| MS.gene059249 | MS.gene91907 | 0.811196 | 7.90E-51 | -1.69E-46 |
| MS.gene059317 | MS.gene91907 | 0.818776 | 1.64E-52 | -1.69E-46 |
| MS.gene059382 | MS.gene91907 | 0.801267 | 9.76E-49 | -1.69E-46 |
| MS.gene05954 | MS.gene91907 | 0.812478 | 4.16E-51 | -1.69E-46 |
| MS.gene059569 | MS.gene91907 | 0.805821 | 1.11E-49 | -1.69E-46 |
| MS.gene059789 | MS.gene91907 | 0.809643 | 1.71E-50 | -1.69E-46 |
| MS.gene05979 | MS.gene91907 | 0.844295 | 8.26E-59 | -1.69E-46 |
| MS.gene059830 | MS.gene91907 | 0.805447 | 1.33E-49 | -1.69E-46 |
| MS.gene059842 | MS.gene91907 | 0.83387 | 4.16E-56 | -1.69E-46 |
| MS.gene060011 | MS.gene91907 | 0.807538 | 4.81E-50 | -1.69E-46 |
| MS.gene060310 | MS.gene91907 | 0.829409 | 5.23E-55 | -1.69E-46 |
| MS.gene060322 | MS.gene91907 | 0.837864 | 4.04E-57 | -1.69E-46 |
| MS.gene060365 | MS.gene91907 | 0.80332 | 3.69E-49 | -1.69E-46 |
| MS.gene060429 | MS.gene91907 | 0.823456 | 1.37E-53 | -1.69E-46 |
| MS.gene060572 | MS.gene91907 | 0.848756 | 5.00E-60 | -1.69E-46 |
| MS.gene060586 | MS.gene91907 | 0.801753 | 7.76E-49 | -1.69E-46 |
| MS.gene060634 | MS.gene91907 | -0.805399 | 1.36E-49 | -1.69E-46 |
| MS.gene060683 | MS.gene91907 | 0.822895 | 1.85E-53 | -1.69E-46 |
| MS.gene060685 | MS.gene91907 | 0.823119 | 1.64E-53 | -1.69E-46 |
| MS.gene060803 | MS.gene91907 | 0.853765 | 1.92E-61 | -1.69E-46 |
| MS.gene060907 | MS.gene91907 | 0.804631 | 1.97E-49 | -1.69E-46 |
| MS.gene060918 | MS.gene91907 | 0.805938 | 1.05E-49 | -1.69E-46 |
| MS.gene060935 | MS.gene91907 | 0.81317 | 2.93E-51 | -1.69E-46 |
| MS.gene060998 | MS.gene91907 | 0.835254 | 1.87E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91907.t1 | MTR_5g039440 | 98.328 | 299 | 5 | 0 | 1 | 299 | 1 | 299 | 0.0 | 608 |
| MS.gene91907.t1 | MTR_1g102335 | 88.095 | 42 | 5 | 0 | 56 | 97 | 17 | 58 | 3.64e-19 | 80.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91907.t1 | AT2G02880 | 57.929 | 309 | 109 | 6 | 1 | 289 | 1 | 308 | 2.93e-114 | 332 |
| MS.gene91907.t1 | AT5G62270 | 37.433 | 187 | 112 | 2 | 114 | 299 | 199 | 381 | 4.96e-25 | 103 |
| MS.gene91907.t1 | AT5G62270 | 37.433 | 187 | 112 | 2 | 114 | 299 | 199 | 381 | 7.60e-25 | 103 |
Find 93 sgRNAs with CRISPR-Local
Find 282 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAGTATATCTTCTTCTCTT+TGG | 0.205774 | 5.3:-27690222 | None:intergenic |
| CCCTTCCCTCTCTTGGCATT+TGG | 0.234727 | 5.3:-27690481 | None:intergenic |
| GAAACTTGAGGAGGCGAAAT+TGG | 0.248773 | 5.3:+27686431 | MS.gene91907:CDS |
| GAAAGGTGGGATTTATAGTT+TGG | 0.258551 | 5.3:+27686338 | MS.gene91907:CDS |
| AAAATATTAAGAAGGATTAT+AGG | 0.285810 | 5.3:+27686361 | MS.gene91907:CDS |
| AAGTATATCTTCTTCTCTTT+GGG | 0.299726 | 5.3:-27690221 | None:intergenic |
| AAAATCAAGATGGAAATATA+TGG | 0.299831 | 5.3:+27690191 | MS.gene91907:CDS |
| TCCCATGGTGCTCGTGTCTT+TGG | 0.306250 | 5.3:-27686186 | None:intergenic |
| ACGGATTGTTGTTGGGAGTT+TGG | 0.339202 | 5.3:-27686079 | None:intergenic |
| GTGCTCGTGTCTTTGGTGTT+AGG | 0.368387 | 5.3:-27686179 | None:intergenic |
| AAACTTGAGGAGGCGAAATT+GGG | 0.372804 | 5.3:+27686432 | MS.gene91907:CDS |
| GAAGTCTTCTCTTCTTTGAA+TGG | 0.374215 | 5.3:-27690547 | None:intergenic |
| AGAAGTTGCATGCTGGGCTT+TGG | 0.374544 | 5.3:+27686394 | MS.gene91907:CDS |
| CTTCTCTTCTTTGAATGGTT+GGG | 0.374760 | 5.3:-27690542 | None:intergenic |
| TGGAAGAGATGAATGAGAAT+TGG | 0.389813 | 5.3:+27686265 | MS.gene91907:CDS |
| TCTTCTCTTCTTTGAATGGT+TGG | 0.391343 | 5.3:-27690543 | None:intergenic |
| CATTCGTCTTCGCCGCTTCG+AGG | 0.392268 | 5.3:-27686120 | None:intergenic |
| GCATGCTGGGCTTTGGAGTA+AGG | 0.392569 | 5.3:+27686401 | MS.gene91907:CDS |
| AATTGGAATGAGAGGAGAAA+AGG | 0.398586 | 5.3:+27686282 | MS.gene91907:CDS |
| AATTGCGTATAGCAAATTTC+AGG | 0.398978 | 5.3:+27690264 | MS.gene91907:CDS |
| TGTTGTTGGGAGTTTGGTGG+TGG | 0.399502 | 5.3:-27686073 | None:intergenic |
| GGGGTGTGGTAGTGGTAATG+GGG | 0.403563 | 5.3:+27686455 | MS.gene91907:CDS |
| TTCTTTGAATGGTTGGGTAG+AGG | 0.407560 | 5.3:-27690536 | None:intergenic |
| TGGAGAAGAGTGATTTGAAT+TGG | 0.428996 | 5.3:-27686053 | None:intergenic |
| CGCGGAGACGAAGGCGTTTG+TGG | 0.431473 | 5.3:+27686245 | MS.gene91907:CDS |
| TCTTTGAATGGTTGGGTAGA+GGG | 0.440125 | 5.3:-27690535 | None:intergenic |
| ATGTATTTCCACCCATCAAT+TGG | 0.442948 | 5.3:-27690442 | None:intergenic |
| CGTTGTTCAGATCATTATTG+TGG | 0.449866 | 5.3:-27690111 | None:intergenic |
| ATTGGAATGAGAGGAGAAAA+GGG | 0.452091 | 5.3:+27686283 | MS.gene91907:CDS |
| GATATTGTTTCCCACCCATC+AGG | 0.452510 | 5.3:-27690166 | None:intergenic |
| AACACTGCCCTTCCCTCTCT+TGG | 0.455080 | 5.3:-27690488 | None:intergenic |
| AGAAACAGAAGTTGCATGCT+GGG | 0.463426 | 5.3:+27686388 | MS.gene91907:CDS |
| AGAAGAAGATATACTTATGC+AGG | 0.469115 | 5.3:+27690228 | MS.gene91907:CDS |
| AAGAAACAGAAGTTGCATGC+TGG | 0.474225 | 5.3:+27686387 | MS.gene91907:CDS |
| TAGTTTGGAAAATATTAAGA+AGG | 0.479941 | 5.3:+27686353 | MS.gene91907:CDS |
| GAGAATTGACGGATTGTTGT+TGG | 0.486189 | 5.3:-27686087 | None:intergenic |
| AGCCGGAGGAGGCCAATTGA+TGG | 0.487719 | 5.3:+27690430 | MS.gene91907:CDS |
| AGAATTGACGGATTGTTGTT+GGG | 0.488814 | 5.3:-27686086 | None:intergenic |
| TGAATGAGAATTGGAATGAG+AGG | 0.489738 | 5.3:+27686274 | MS.gene91907:CDS |
| GTCTTTGGTGTTAGGTCTTG+TGG | 0.490061 | 5.3:-27686171 | None:intergenic |
| GAAATACATGATTGAGGTGG+TGG | 0.492359 | 5.3:+27690456 | MS.gene91907:CDS |
| TTCGGAAGAAGTGGCGGACG+CGG | 0.493653 | 5.3:+27686227 | MS.gene91907:CDS |
| GTTGTTCAGATCATTATTGT+GGG | 0.496230 | 5.3:-27690110 | None:intergenic |
| GAGGAGAAAAGGGTTGAAGA+AGG | 0.496899 | 5.3:+27686293 | MS.gene91907:CDS |
| CTCGAAGCGGCGAAGACGAA+TGG | 0.498375 | 5.3:+27686121 | MS.gene91907:CDS |
| GATTGTTGTTGGGAGTTTGG+TGG | 0.499349 | 5.3:-27686076 | None:intergenic |
| AGGAGGAGAATGTGAAAGGT+GGG | 0.500011 | 5.3:+27686325 | MS.gene91907:CDS |
| GTTGAAGAAGGAGAAGGTTG+AGG | 0.502124 | 5.3:+27686305 | MS.gene91907:CDS |
| ACCCATCAATTGGCCTCCTC+CGG | 0.503862 | 5.3:-27690432 | None:intergenic |
| TCAAGACACACATATTTAGC+CGG | 0.505354 | 5.3:+27690413 | MS.gene91907:CDS |
| AAGACGAATGGAACGAAGCA+TGG | 0.512420 | 5.3:+27686133 | MS.gene91907:CDS |
| GACCAGGCTATCTCCTACCA+AGG | 0.517693 | 5.3:-27690591 | None:intergenic |
| AAATCAAGATGGAAATATAT+GGG | 0.521501 | 5.3:+27690192 | MS.gene91907:CDS |
| GCCGGAGGAGGCCAATTGAT+GGG | 0.524719 | 5.3:+27690431 | MS.gene91907:CDS |
| GAGGAGGAGAATGTGAAAGG+TGG | 0.533233 | 5.3:+27686324 | MS.gene91907:CDS |
| AGACGAATGGAACGAAGCAT+GGG | 0.537284 | 5.3:+27686134 | MS.gene91907:CDS |
| GAAGAAGGAGAAGGTTGAGG+AGG | 0.538173 | 5.3:+27686308 | MS.gene91907:CDS |
| AACTTGAGGAGGCGAAATTG+GGG | 0.540273 | 5.3:+27686433 | MS.gene91907:CDS |
| TAAGGAGATTGAGAAACTTG+AGG | 0.544087 | 5.3:+27686419 | MS.gene91907:CDS |
| CCAAATGCCAAGAGAGGGAA+GGG | 0.544767 | 5.3:+27690481 | MS.gene91907:CDS |
| ACCAAAGACACGAGCACCAT+GGG | 0.550429 | 5.3:+27686185 | MS.gene91907:CDS |
| TGTTGTTGTGATTCTTCGAA+AGG | 0.551025 | 5.3:-27686016 | None:intergenic |
| AGGAGACGTGAATTTCGCTT+CGG | 0.552773 | 5.3:+27686209 | MS.gene91907:CDS |
| GATTGCGAGATGAGAATTGA+CGG | 0.555084 | 5.3:-27686098 | None:intergenic |
| GAATTTCGCTTCGGAAGAAG+TGG | 0.555553 | 5.3:+27686218 | MS.gene91907:CDS |
| GATAAGAGTTACATTCCCCT+TGG | 0.562876 | 5.3:+27690574 | MS.gene91907:CDS |
| GTTGAGGAGGAGAATGTGAA+AGG | 0.575029 | 5.3:+27686321 | MS.gene91907:CDS |
| CACACATATTTAGCCGGAGG+AGG | 0.582454 | 5.3:+27690419 | MS.gene91907:CDS |
| AAAAGGGTTGAAGAAGGAGA+AGG | 0.586592 | 5.3:+27686299 | MS.gene91907:CDS |
| AGAGTTACATTCCCCTTGGT+AGG | 0.590750 | 5.3:+27690578 | MS.gene91907:CDS |
| TACTTATGCAGGAATTCGAA+CGG | 0.593879 | 5.3:+27690239 | MS.gene91907:CDS |
| ACCAGGCTATCTCCTACCAA+GGG | 0.602895 | 5.3:-27690590 | None:intergenic |
| ACCAAATGCCAAGAGAGGGA+AGG | 0.608335 | 5.3:+27690480 | MS.gene91907:CDS |
| AAATTCACGTCTCCTTCCCA+TGG | 0.608435 | 5.3:-27686201 | None:intergenic |
| AGTGGCGGACGCGGAGACGA+AGG | 0.608660 | 5.3:+27686236 | MS.gene91907:CDS |
| CTTGAGGAGGCGAAATTGGG+GGG | 0.616628 | 5.3:+27686435 | MS.gene91907:CDS |
| CACCAAAGACACGAGCACCA+TGG | 0.621256 | 5.3:+27686184 | MS.gene91907:CDS |
| AAGACACGAGCACCATGGGA+AGG | 0.621580 | 5.3:+27686189 | MS.gene91907:CDS |
| TTTCGCTTCGGAAGAAGTGG+CGG | 0.622582 | 5.3:+27686221 | MS.gene91907:CDS |
| GTGGGACCAAATGCCAAGAG+AGG | 0.630227 | 5.3:+27690475 | MS.gene91907:CDS |
| ACTTGAGGAGGCGAAATTGG+GGG | 0.644793 | 5.3:+27686434 | MS.gene91907:CDS |
| GTAGAGGGATCAGAGAGACT+TGG | 0.651783 | 5.3:-27690520 | None:intergenic |
| TTGAGGAGGCGAAATTGGGG+GGG | 0.653265 | 5.3:+27686436 | MS.gene91907:CDS |
| TGGGACCAAATGCCAAGAGA+GGG | 0.653748 | 5.3:+27690476 | MS.gene91907:CDS |
| GGAGGAGGCCAATTGATGGG+TGG | 0.673463 | 5.3:+27690434 | MS.gene91907:CDS |
| AGACACACATATTTAGCCGG+AGG | 0.692755 | 5.3:+27690416 | MS.gene91907:CDS |
| GGAGATTGAGAAACTTGAGG+AGG | 0.693976 | 5.3:+27686422 | MS.gene91907:CDS |
| TCATCTCGCAATCCTCGAAG+CGG | 0.702378 | 5.3:+27686108 | MS.gene91907:CDS |
| AAATACATGATTGAGGTGGT+GGG | 0.711165 | 5.3:+27690457 | MS.gene91907:CDS |
| CCAGGCTATCTCCTACCAAG+GGG | 0.715022 | 5.3:-27690589 | None:intergenic |
| ACGAAGCATGGGAATCAGCG+TGG | 0.715370 | 5.3:+27686145 | MS.gene91907:CDS |
| GTGGAAATACATGATTGAGG+TGG | 0.721823 | 5.3:+27690453 | MS.gene91907:CDS |
| TGGGTGGAAATACATGATTG+AGG | 0.745836 | 5.3:+27690450 | MS.gene91907:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAACAATATAATGCTTAAT+AGG | - | chr5.3:27690320-27690339 | None:intergenic | 15.0% |
| !! | AAAATATTAAGAAGGATTAT+AGG | + | chr5.3:27686361-27686380 | MS.gene91907:CDS | 15.0% |
| !! | AATAAGATGCTTATAAAAAT+AGG | + | chr5.3:27687622-27687641 | MS.gene91907:intron | 15.0% |
| !! | ATAAGATGCTTATAAAAATA+GGG | + | chr5.3:27687623-27687642 | MS.gene91907:intron | 15.0% |
| !! | TATAAAGTTATAAATGCTAA+AGG | - | chr5.3:27690366-27690385 | None:intergenic | 15.0% |
| !! | TTAAACTATTTATGCAAATA+TGG | + | chr5.3:27687163-27687182 | MS.gene91907:intron | 15.0% |
| !! | TTTCTAAATATTTCAATTAG+CGG | + | chr5.3:27689886-27689905 | MS.gene91907:intron | 15.0% |
| !!! | ATTAAGCATTATATTGTTTT+TGG | + | chr5.3:27690320-27690339 | MS.gene91907:intron | 15.0% |
| !!! | TTAATTACTTTAAGCTTTTA+AGG | + | chr5.3:27689709-27689728 | MS.gene91907:intron | 15.0% |
| !! | AAAATCAAGATGGAAATATA+TGG | + | chr5.3:27690191-27690210 | MS.gene91907:CDS | 20.0% |
| !! | AAATCAAGATGGAAATATAT+GGG | + | chr5.3:27690192-27690211 | MS.gene91907:CDS | 20.0% |
| !! | ACTTATTTAAACTTATCTAC+TGG | - | chr5.3:27686907-27686926 | None:intergenic | 20.0% |
| !! | AGATACATTAATATTAAAGC+AGG | - | chr5.3:27690052-27690071 | None:intergenic | 20.0% |
| !! | ATCAATCAATTAAGAAACTA+TGG | - | chr5.3:27687189-27687208 | None:intergenic | 20.0% |
| !! | ATGACATATTTATAAGTCAT+TGG | - | chr5.3:27687294-27687313 | None:intergenic | 20.0% |
| !! | TAGTTTGGAAAATATTAAGA+AGG | + | chr5.3:27686353-27686372 | MS.gene91907:CDS | 20.0% |
| !!! | AGTGGATGAAAATTAAATTT+TGG | + | chr5.3:27688172-27688191 | MS.gene91907:intron | 20.0% |
| !!! | TAGTGGTTTTAATTTATACT+TGG | + | chr5.3:27687992-27688011 | MS.gene91907:intron | 20.0% |
| !!! | TTTTTTCACTTTAATGTTGA+AGG | + | chr5.3:27688744-27688763 | MS.gene91907:intron | 20.0% |
| ! | AAAGTATGATCCAATTTAAG+AGG | - | chr5.3:27687224-27687243 | None:intergenic | 25.0% |
| ! | AAATTGAATTCAAAGTGTAG+TGG | + | chr5.3:27687975-27687994 | MS.gene91907:intron | 25.0% |
| ! | AAGTATATCTTCTTCTCTTT+GGG | - | chr5.3:27690224-27690243 | None:intergenic | 25.0% |
| ! | ACAATATCGAAAAATCAAGA+TGG | + | chr5.3:27690181-27690200 | MS.gene91907:CDS | 25.0% |
| ! | ACCTATCTGTATATATGATA+AGG | + | chr5.3:27689053-27689072 | MS.gene91907:intron | 25.0% |
| ! | ACCTTATCATATATACAGAT+AGG | - | chr5.3:27689057-27689076 | None:intergenic | 25.0% |
| ! | AGCCAAAAAAATAAAGATAG+CGG | - | chr5.3:27689932-27689951 | None:intergenic | 25.0% |
| ! | ATCAATCAATTAACCAACTA+TGG | - | chr5.3:27687649-27687668 | None:intergenic | 25.0% |
| ! | CTTAAAATTGAGTCATTACA+GGG | + | chr5.3:27689384-27689403 | MS.gene91907:intron | 25.0% |
| ! | GCTTGTATAACAAATACTTA+TGG | + | chr5.3:27687588-27687607 | MS.gene91907:intron | 25.0% |
| ! | GTGTTATAAAATATAGACCT+TGG | + | chr5.3:27689172-27689191 | MS.gene91907:intron | 25.0% |
| ! | TAAAACAGAAATGAAAACAG+TGG | - | chr5.3:27689677-27689696 | None:intergenic | 25.0% |
| ! | TAAGTATATCTTCTTCTCTT+TGG | - | chr5.3:27690225-27690244 | None:intergenic | 25.0% |
| ! | TAGCTAATATGGAAACAATT+TGG | + | chr5.3:27687518-27687537 | MS.gene91907:intron | 25.0% |
| ! | TGATTGAAAGAGAAAGAAAA+GGG | - | chr5.3:27689496-27689515 | None:intergenic | 25.0% |
| ! | TGTGAGGAACATTATATATT+TGG | + | chr5.3:27688507-27688526 | MS.gene91907:intron | 25.0% |
| ! | TGTGTCAATACTTCATTTAA+AGG | - | chr5.3:27686574-27686593 | None:intergenic | 25.0% |
| ! | TTAAAATTGAGTCATTACAG+GGG | + | chr5.3:27689385-27689404 | MS.gene91907:intron | 25.0% |
| !! | AATCACACACTTGATATTTT+TGG | + | chr5.3:27688429-27688448 | MS.gene91907:intron | 25.0% |
| !! | GCTGTTTAAGATAGTTTATA+TGG | + | chr5.3:27687060-27687079 | MS.gene91907:intron | 25.0% |
| !! | GGTATTTTATGATTTTCTCA+CGG | + | chr5.3:27689407-27689426 | MS.gene91907:intron | 25.0% |
| !! | TGATGGCATTTAAAATGAAA+AGG | - | chr5.3:27688906-27688925 | None:intergenic | 25.0% |
| !! | TTTGTTTCGTTGAATTTTGT+TGG | + | chr5.3:27689741-27689760 | MS.gene91907:intron | 25.0% |
| !! | TTTTATAACACATCATGTCA+TGG | - | chr5.3:27689163-27689182 | None:intergenic | 25.0% |
| !!! | ATGTTTTTGAATTCAGAAGT+TGG | - | chr5.3:27690145-27690164 | None:intergenic | 25.0% |
| !!! | CTATCTTTATTTTTTTGGCT+CGG | + | chr5.3:27689932-27689951 | MS.gene91907:intron | 25.0% |
| !!! | CTCAATTTTAAGGTTAATTC+TGG | - | chr5.3:27689376-27689395 | None:intergenic | 25.0% |
| !!! | GCTTAAAATTAAGAGCATTT+AGG | - | chr5.3:27687833-27687852 | None:intergenic | 25.0% |
| !!! | GTTGTTTTCATAAGTTATTC+TGG | + | chr5.3:27686795-27686814 | MS.gene91907:intron | 25.0% |
| AAAGCATAAACTACAAGATG+AGG | - | chr5.3:27688845-27688864 | None:intergenic | 30.0% | |
| AATTCAAAAACATGCCTGAT+GGG | + | chr5.3:27690152-27690171 | MS.gene91907:CDS | 30.0% | |
| AATTGCGTATAGCAAATTTC+AGG | + | chr5.3:27690264-27690283 | MS.gene91907:CDS | 30.0% | |
| ACATAAACATTACCATCTCA+TGG | + | chr5.3:27689979-27689998 | MS.gene91907:intron | 30.0% | |
| ACTAGATTAATTTCGATCCA+AGG | - | chr5.3:27689192-27689211 | None:intergenic | 30.0% | |
| AGAAGAAGATATACTTATGC+AGG | + | chr5.3:27690228-27690247 | MS.gene91907:CDS | 30.0% | |
| ATGATGTGATGCTCTTAAAT+TGG | + | chr5.3:27687671-27687690 | MS.gene91907:intron | 30.0% | |
| ATGATGTGTTCCTCTTAAAT+TGG | + | chr5.3:27687211-27687230 | MS.gene91907:intron | 30.0% | |
| ATTCTGATAGATGTTGAGAA+AGG | + | chr5.3:27688944-27688963 | MS.gene91907:intron | 30.0% | |
| CAAAATTCAACGAAACAAAC+AGG | - | chr5.3:27689740-27689759 | None:intergenic | 30.0% | |
| CATTATATATTTGGTCGTCT+TGG | + | chr5.3:27688516-27688535 | MS.gene91907:intron | 30.0% | |
| CCTTAAAATTGAGTCATTAC+AGG | + | chr5.3:27689383-27689402 | MS.gene91907:intron | 30.0% | |
| CTTCGGAAAAATATATTGCT+TGG | - | chr5.3:27688143-27688162 | None:intergenic | 30.0% | |
| GCCAAAAAAATAAAGATAGC+GGG | - | chr5.3:27689931-27689950 | None:intergenic | 30.0% | |
| GTGATTGAAAGAGAAAGAAA+AGG | - | chr5.3:27689497-27689516 | None:intergenic | 30.0% | |
| GTTGTTCAGATCATTATTGT+GGG | - | chr5.3:27690113-27690132 | None:intergenic | 30.0% | |
| TAAAATTGAGTCATTACAGG+GGG | + | chr5.3:27689386-27689405 | MS.gene91907:intron | 30.0% | |
| TATAAAAATAGGGCCATAGT+TGG | + | chr5.3:27687633-27687652 | MS.gene91907:intron | 30.0% | |
| TCAAATAAGTCAATCCAAAC+CGG | + | chr5.3:27687367-27687386 | MS.gene91907:intron | 30.0% | |
| TCTATCAGAATGCAATAGAA+AGG | - | chr5.3:27688935-27688954 | None:intergenic | 30.0% | |
| TCTATTAGTGATCTGTTTCA+AGG | - | chr5.3:27688207-27688226 | None:intergenic | 30.0% | |
| TTAAATAAGTCAATCCAAGC+AGG | + | chr5.3:27686917-27686936 | MS.gene91907:intron | 30.0% | |
| TTCTGATAGATGTTGAGAAA+GGG | + | chr5.3:27688945-27688964 | MS.gene91907:intron | 30.0% | |
| TTGAAACAGATCACTAATAG+AGG | + | chr5.3:27688206-27688225 | MS.gene91907:intron | 30.0% | |
| ! | AAAATGAAAAGGCATATGCT+AGG | - | chr5.3:27688895-27688914 | None:intergenic | 30.0% |
| ! | AAGTTATTCTGGAGAGATTA+TGG | + | chr5.3:27686806-27686825 | MS.gene91907:intron | 30.0% |
| ! | ATTTGGCTTCAGTTTATCTT+TGG | + | chr5.3:27687535-27687554 | MS.gene91907:intron | 30.0% |
| ! | CAAGCAATATATTTTTCCGA+AGG | + | chr5.3:27688141-27688160 | MS.gene91907:intron | 30.0% |
| ! | CCTGTAATGACTCAATTTTA+AGG | - | chr5.3:27689386-27689405 | None:intergenic | 30.0% |
| ! | GTTTCATTTTATGCTCTGTT+TGG | + | chr5.3:27686541-27686560 | MS.gene91907:intron | 30.0% |
| ! | TTTTTGTGAAAGTTGAGGAT+TGG | + | chr5.3:27688862-27688881 | MS.gene91907:intron | 30.0% |
| ! | TTTTTGTGCAATTGGGTTTT+AGG | + | chr5.3:27688663-27688682 | MS.gene91907:intron | 30.0% |
| !! | AAAATACTGCAGTTGATAAG+AGG | - | chr5.3:27690085-27690104 | None:intergenic | 30.0% |
| !! | TATGCTTTTTGTGAAAGTTG+AGG | + | chr5.3:27688857-27688876 | MS.gene91907:intron | 30.0% |
| !!! | AACATGCTTTTTTGTGCAAT+TGG | + | chr5.3:27688655-27688674 | MS.gene91907:intron | 30.0% |
| !!! | ACATGCTTTTTTGTGCAATT+GGG | + | chr5.3:27688656-27688675 | MS.gene91907:intron | 30.0% |
| !!! | CTGCTGATATATCTAGTTTT+AGG | + | chr5.3:27688602-27688621 | MS.gene91907:intron | 30.0% |
| AAAAGAGGAGAAACAGAAAC+AGG | - | chr5.3:27689638-27689657 | None:intergenic | 35.0% | |
| AAAGAGGAGAAACAGAAACA+GGG | - | chr5.3:27689637-27689656 | None:intergenic | 35.0% | |
| AAATACATGATTGAGGTGGT+GGG | + | chr5.3:27690457-27690476 | MS.gene91907:CDS | 35.0% | |
| AATTGGAATGAGAGGAGAAA+AGG | + | chr5.3:27686282-27686301 | MS.gene91907:CDS | 35.0% | |
| ACAGATCACTAATAGAGGAT+AGG | + | chr5.3:27688211-27688230 | MS.gene91907:intron | 35.0% | |
| ACTAGATATATCAGCAGACT+TGG | - | chr5.3:27688599-27688618 | None:intergenic | 35.0% | |
| ACTGAAACTTCAGATTGAAG+CGG | - | chr5.3:27687790-27687809 | None:intergenic | 35.0% | |
| AGTCAACAGAAAGAGCTTTA+TGG | - | chr5.3:27687394-27687413 | None:intergenic | 35.0% | |
| ATGTATTTCCACCCATCAAT+TGG | - | chr5.3:27690445-27690464 | None:intergenic | 35.0% | |
| ATTAGTGATCTGTTTCAAGG+TGG | - | chr5.3:27688204-27688223 | None:intergenic | 35.0% | |
| ATTGGAATGAGAGGAGAAAA+GGG | + | chr5.3:27686283-27686302 | MS.gene91907:CDS | 35.0% | |
| CACGTATTGTTTGTAACCTA+TGG | + | chr5.3:27687857-27687876 | MS.gene91907:intron | 35.0% | |
| CATCCACTCAAATATACCTT+CGG | - | chr5.3:27688160-27688179 | None:intergenic | 35.0% | |
| CGTTGTTCAGATCATTATTG+TGG | - | chr5.3:27690114-27690133 | None:intergenic | 35.0% | |
| CTAAGCATGTATGTCCTATA+AGG | - | chr5.3:27686713-27686732 | None:intergenic | 35.0% | |
| CTATTTCCAAGTCTTCTCTT+CGG | + | chr5.3:27689436-27689455 | MS.gene91907:intron | 35.0% | |
| CTTATAGGACATACATGCTT+AGG | + | chr5.3:27686711-27686730 | MS.gene91907:intron | 35.0% | |
| CTTCTCTTCTTTGAATGGTT+GGG | - | chr5.3:27690545-27690564 | None:intergenic | 35.0% | |
| GAAAGGTGGGATTTATAGTT+TGG | + | chr5.3:27686338-27686357 | MS.gene91907:CDS | 35.0% | |
| GAAGTCTTCTCTTCTTTGAA+TGG | - | chr5.3:27690550-27690569 | None:intergenic | 35.0% | |
| GAATTCAAAAACATGCCTGA+TGG | + | chr5.3:27690151-27690170 | MS.gene91907:CDS | 35.0% | |
| GCTCTTGAAGATAGCTAATA+TGG | + | chr5.3:27687507-27687526 | MS.gene91907:intron | 35.0% | |
| TAAGGAGATTGAGAAACTTG+AGG | + | chr5.3:27686419-27686438 | MS.gene91907:CDS | 35.0% | |
| TACTTATGCAGGAATTCGAA+CGG | + | chr5.3:27690239-27690258 | MS.gene91907:CDS | 35.0% | |
| TCAAGACACACATATTTAGC+CGG | + | chr5.3:27690413-27690432 | MS.gene91907:CDS | 35.0% | |
| TCAATAATCATAGCACGCAA+TGG | - | chr5.3:27688576-27688595 | None:intergenic | 35.0% | |
| TCAGCACTTTCATAACAAAG+TGG | - | chr5.3:27688805-27688824 | None:intergenic | 35.0% | |
| TCAGGTGCTTATTAAAAGAC+AGG | + | chr5.3:27690282-27690301 | MS.gene91907:intron | 35.0% | |
| TCTTCTCTTCTTTGAATGGT+TGG | - | chr5.3:27690546-27690565 | None:intergenic | 35.0% | |
| TGAATGAGAATTGGAATGAG+AGG | + | chr5.3:27686274-27686293 | MS.gene91907:CDS | 35.0% | |
| TGGAAGAGATGAATGAGAAT+TGG | + | chr5.3:27686265-27686284 | MS.gene91907:CDS | 35.0% | |
| TGGAGAAGAGTGATTTGAAT+TGG | - | chr5.3:27686056-27686075 | None:intergenic | 35.0% | |
| TGTCCTATAAGGTGCAAAAT+AGG | - | chr5.3:27686702-27686721 | None:intergenic | 35.0% | |
| TGTTGTTGTGATTCTTCGAA+AGG | - | chr5.3:27686019-27686038 | None:intergenic | 35.0% | |
| ! | AACTCTACTAGTGTTGAAGT+TGG | + | chr5.3:27688698-27688717 | MS.gene91907:intron | 35.0% |
| ! | AGACCTATTTTGCACCTTAT+AGG | + | chr5.3:27686696-27686715 | MS.gene91907:intron | 35.0% |
| ! | AGAGTGTTTAGTATAGCTCA+CGG | + | chr5.3:27687439-27687458 | MS.gene91907:intron | 35.0% |
| ! | CAATAGAAAGGCAGTATTGA+TGG | - | chr5.3:27688923-27688942 | None:intergenic | 35.0% |
| ! | CATCAGTTCTAGTTAAGATG+AGG | + | chr5.3:27688079-27688098 | MS.gene91907:intron | 35.0% |
| ! | CTCGGGTAGAGTTTAAAATT+TGG | + | chr5.3:27687889-27687908 | MS.gene91907:intron | 35.0% |
| ! | GGGTAGAGTTTAAAATTTGG+AGG | + | chr5.3:27687892-27687911 | MS.gene91907:intron | 35.0% |
| ! | GTCAACAGAAAGAGCTTTAT+GGG | - | chr5.3:27687393-27687412 | None:intergenic | 35.0% |
| ! | TTGGAGGCTTTTAATGTGTT+TGG | + | chr5.3:27687908-27687927 | MS.gene91907:intron | 35.0% |
| ! | TTTCCGAAGGTATATTTGAG+TGG | + | chr5.3:27688154-27688173 | MS.gene91907:intron | 35.0% |
| !! | AACACTTTGTGAGAGTGTTT+AGG | + | chr5.3:27686978-27686997 | MS.gene91907:intron | 35.0% |
| !! | AGAATTGACGGATTGTTGTT+GGG | - | chr5.3:27686089-27686108 | None:intergenic | 35.0% |
| !!! | GCCCGCTATCTTTATTTTTT+TGG | + | chr5.3:27689927-27689946 | MS.gene91907:intron | 35.0% |
| AAAAGGGTTGAAGAAGGAGA+AGG | + | chr5.3:27686299-27686318 | MS.gene91907:CDS | 40.0% | |
| AAACTTGAGGAGGCGAAATT+GGG | + | chr5.3:27686432-27686451 | MS.gene91907:CDS | 40.0% | |
| AAGAAACAGAAGTTGCATGC+TGG | + | chr5.3:27686387-27686406 | MS.gene91907:CDS | 40.0% | |
| ACGCACACTGAAATAGATGT+AGG | + | chr5.3:27689136-27689155 | MS.gene91907:intron | 40.0% | |
| AGAAACAGAAGTTGCATGCT+GGG | + | chr5.3:27686388-27686407 | MS.gene91907:CDS | 40.0% | |
| AGCTCATGGAAACAGCTTAT+GGG | + | chr5.3:27687003-27687022 | MS.gene91907:intron | 40.0% | |
| AGGTTACAAACAATACGTGC+TGG | - | chr5.3:27687856-27687875 | None:intergenic | 40.0% | |
| ATGTGTAGAGAAGATGTGTG+AGG | + | chr5.3:27688491-27688510 | MS.gene91907:intron | 40.0% | |
| ATGTTGAGAAAGGGTAGCAA+AGG | + | chr5.3:27688954-27688973 | MS.gene91907:intron | 40.0% | |
| ATGTTGTCAGTCCTGTATAG+CGG | - | chr5.3:27689963-27689982 | None:intergenic | 40.0% | |
| CACGAAACACGAAGAAAAAG+AGG | - | chr5.3:27689653-27689672 | None:intergenic | 40.0% | |
| CATTGTGTACATGTCATTGC+TGG | - | chr5.3:27687708-27687727 | None:intergenic | 40.0% | |
| GAAATACATGATTGAGGTGG+TGG | + | chr5.3:27690456-27690475 | MS.gene91907:CDS | 40.0% | |
| GATAAGAGTTACATTCCCCT+TGG | + | chr5.3:27690574-27690593 | MS.gene91907:CDS | 40.0% | |
| GATTGCGAGATGAGAATTGA+CGG | - | chr5.3:27686101-27686120 | None:intergenic | 40.0% | |
| GGTTACAAACAATACGTGCT+GGG | - | chr5.3:27687855-27687874 | None:intergenic | 40.0% | |
| GTGGAAATACATGATTGAGG+TGG | + | chr5.3:27690453-27690472 | MS.gene91907:CDS | 40.0% | |
| TAGCTCATGGAAACAGCTTA+TGG | + | chr5.3:27687002-27687021 | MS.gene91907:intron | 40.0% | |
| TCATCGCCATCTATAACCTA+GGG | - | chr5.3:27688258-27688277 | None:intergenic | 40.0% | |
| TCTTTGAATGGTTGGGTAGA+GGG | - | chr5.3:27690538-27690557 | None:intergenic | 40.0% | |
| TGGGTGGAAATACATGATTG+AGG | + | chr5.3:27690450-27690469 | MS.gene91907:CDS | 40.0% | |
| TTCATCGCCATCTATAACCT+AGG | - | chr5.3:27688259-27688278 | None:intergenic | 40.0% | |
| TTCTTTGAATGGTTGGGTAG+AGG | - | chr5.3:27690539-27690558 | None:intergenic | 40.0% | |
| ! | AACCTATGGCTTGTGTTTCT+CGG | + | chr5.3:27687871-27687890 | MS.gene91907:intron | 40.0% |
| ! | AGAGCATTTAGGATCAGCAT+AGG | - | chr5.3:27687822-27687841 | None:intergenic | 40.0% |
| ! | AGAGTGTTTAGGATAGCTCA+TGG | + | chr5.3:27686989-27687008 | MS.gene91907:intron | 40.0% |
| ! | CTCTTTTTCTTCGTGTTTCG+TGG | + | chr5.3:27689651-27689670 | MS.gene91907:intron | 40.0% |
| ! | TTTAGAGGCTATGCCTGTTT+TGG | + | chr5.3:27689592-27689611 | MS.gene91907:intron | 40.0% |
| !! | AAATAAAGATAGCGGGCTAC+CGG | - | chr5.3:27689924-27689943 | None:intergenic | 40.0% |
| !! | CTGCAGTTGATAAGAGGATT+AGG | - | chr5.3:27690079-27690098 | None:intergenic | 40.0% |
| !! | GAGAATTGACGGATTGTTGT+TGG | - | chr5.3:27686090-27686109 | None:intergenic | 40.0% |
| !! | TGAAGTATTGACACAGACAC+AGG | + | chr5.3:27686579-27686598 | MS.gene91907:intron | 40.0% |
| AAAAGCAAGTAGTGGTCACC+GGG | + | chr5.3:27689294-27689313 | MS.gene91907:intron | 45.0% | |
| AAACAGAGTGGCTCCAAAAC+AGG | - | chr5.3:27689608-27689627 | None:intergenic | 45.0% | |
| AAATTCACGTCTCCTTCCCA+TGG | - | chr5.3:27686204-27686223 | None:intergenic | 45.0% | |
| AACTTGAGGAGGCGAAATTG+GGG | + | chr5.3:27686433-27686452 | MS.gene91907:CDS | 45.0% | |
| AAGACGAATGGAACGAAGCA+TGG | + | chr5.3:27686133-27686152 | MS.gene91907:CDS | 45.0% | |
| AGACACACATATTTAGCCGG+AGG | + | chr5.3:27690416-27690435 | MS.gene91907:CDS | 45.0% | |
| AGACGAATGGAACGAAGCAT+GGG | + | chr5.3:27686134-27686153 | MS.gene91907:CDS | 45.0% | |
| AGAGTTACATTCCCCTTGGT+AGG | + | chr5.3:27690578-27690597 | MS.gene91907:CDS | 45.0% | |
| AGGAGACGTGAATTTCGCTT+CGG | + | chr5.3:27686209-27686228 | MS.gene91907:CDS | 45.0% | |
| AGGAGGAGAATGTGAAAGGT+GGG | + | chr5.3:27686325-27686344 | MS.gene91907:CDS | 45.0% | |
| AGGGAAAGTGAAGAGTTGAG+AGG | - | chr5.3:27689477-27689496 | None:intergenic | 45.0% | |
| ATCGCATACGTGTCAGTTTC+TGG | - | chr5.3:27687263-27687282 | None:intergenic | 45.0% | |
| ATGTAACGACACGTTGGTGT+TGG | + | chr5.3:27687751-27687770 | MS.gene91907:intron | 45.0% | |
| CAAAAGCAAGTAGTGGTCAC+CGG | + | chr5.3:27689293-27689312 | MS.gene91907:intron | 45.0% | |
| CAGGCATAGCCTCTAAACAA+AGG | - | chr5.3:27689589-27689608 | None:intergenic | 45.0% | |
| CCATCTATAACCTAGGGACT+AGG | - | chr5.3:27688252-27688271 | None:intergenic | 45.0% | |
| CCTAGTCCCTAGGTTATAGA+TGG | + | chr5.3:27688249-27688268 | MS.gene91907:intron | 45.0% | |
| CGTGTTCCAAAAGCAAGTAG+TGG | + | chr5.3:27689286-27689305 | MS.gene91907:intron | 45.0% | |
| GAAACTTGAGGAGGCGAAAT+TGG | + | chr5.3:27686431-27686450 | MS.gene91907:CDS | 45.0% | |
| GAATTTCGCTTCGGAAGAAG+TGG | + | chr5.3:27686218-27686237 | MS.gene91907:CDS | 45.0% | |
| GAGGAGAAAAGGGTTGAAGA+AGG | + | chr5.3:27686293-27686312 | MS.gene91907:CDS | 45.0% | |
| GATATTGTTTCCCACCCATC+AGG | - | chr5.3:27690169-27690188 | None:intergenic | 45.0% | |
| GATCGAATGTAACGACACGT+TGG | + | chr5.3:27687745-27687764 | MS.gene91907:intron | 45.0% | |
| GCATAGCCTCTAAACAAAGG+AGG | - | chr5.3:27689586-27689605 | None:intergenic | 45.0% | |
| GGAGATTGAGAAACTTGAGG+AGG | + | chr5.3:27686422-27686441 | MS.gene91907:CDS | 45.0% | |
| GGGAAAGTGAAGAGTTGAGA+GGG | - | chr5.3:27689476-27689495 | None:intergenic | 45.0% | |
| GTTGAAGAAGGAGAAGGTTG+AGG | + | chr5.3:27686305-27686324 | MS.gene91907:CDS | 45.0% | |
| GTTGAGGAGGAGAATGTGAA+AGG | + | chr5.3:27686321-27686340 | MS.gene91907:CDS | 45.0% | |
| GTTGCATTCTTGTTGCAGCA+TGG | + | chr5.3:27689316-27689335 | MS.gene91907:intron | 45.0% | |
| TCAAAAACATGCCTGATGGG+TGG | + | chr5.3:27690155-27690174 | MS.gene91907:CDS | 45.0% | |
| TGAGAAAGGGTAGCAAAGGT+AGG | + | chr5.3:27688958-27688977 | MS.gene91907:intron | 45.0% | |
| TGTGTACATGTCATTGCTGG+TGG | - | chr5.3:27687705-27687724 | None:intergenic | 45.0% | |
| TTCACACCGAAGAGAAGACT+TGG | - | chr5.3:27689445-27689464 | None:intergenic | 45.0% | |
| ! | AAGTCTTCTCTTCGGTGTGA+AGG | + | chr5.3:27689444-27689463 | MS.gene91907:intron | 45.0% |
| ! | ACAGAAAGAGCTTTATGGGC+CGG | - | chr5.3:27687389-27687408 | None:intergenic | 45.0% |
| ! | ACCTATGGCTTGTGTTTCTC+GGG | + | chr5.3:27687872-27687891 | MS.gene91907:intron | 45.0% |
| ! | ACGGATTGTTGTTGGGAGTT+TGG | - | chr5.3:27686082-27686101 | None:intergenic | 45.0% |
| ! | CAAAAACATGCCTGATGGGT+GGG | + | chr5.3:27690156-27690175 | MS.gene91907:CDS | 45.0% |
| ! | GATTGTTGTTGGGAGTTTGG+TGG | - | chr5.3:27686079-27686098 | None:intergenic | 45.0% |
| ! | TGTAACGACACGTTGGTGTT+GGG | + | chr5.3:27687752-27687771 | MS.gene91907:intron | 45.0% |
| !! | AATAAAGATAGCGGGCTACC+GGG | - | chr5.3:27689923-27689942 | None:intergenic | 45.0% |
| !! | GTCTTTGGTGTTAGGTCTTG+TGG | - | chr5.3:27686174-27686193 | None:intergenic | 45.0% |
| AACGCAACATGGCAGTGTGA+CGG | - | chr5.3:27689236-27689255 | None:intergenic | 50.0% | |
| ACAGGGAGACAGAAACAGAG+TGG | - | chr5.3:27689620-27689639 | None:intergenic | 50.0% | |
| ACCAAAGACACGAGCACCAT+GGG | + | chr5.3:27686185-27686204 | MS.gene91907:CDS | 50.0% | |
| ACCAAATGCCAAGAGAGGGA+AGG | + | chr5.3:27690480-27690499 | MS.gene91907:CDS | 50.0% | |
| ACCCGAGAAACACAAGCCAT+AGG | - | chr5.3:27687876-27687895 | None:intergenic | 50.0% | |
| ACTTGAGGAGGCGAAATTGG+GGG | + | chr5.3:27686434-27686453 | MS.gene91907:CDS | 50.0% | |
| AGAAGTTGCATGCTGGGCTT+TGG | + | chr5.3:27686394-27686413 | MS.gene91907:CDS | 50.0% | |
| AGTGAAGAGTTGAGAGGGTG+TGG | - | chr5.3:27689471-27689490 | None:intergenic | 50.0% | |
| CACACATATTTAGCCGGAGG+AGG | + | chr5.3:27690419-27690438 | MS.gene91907:CDS | 50.0% | |
| CATTCCCCTTGGTAGGAGAT+AGG | + | chr5.3:27690585-27690604 | MS.gene91907:CDS | 50.0% | |
| CCAAATGCCAAGAGAGGGAA+GGG | + | chr5.3:27690481-27690500 | MS.gene91907:CDS | 50.0% | |
| CCTCTAAACAAAGGAGGCGA+TGG | - | chr5.3:27689580-27689599 | None:intergenic | 50.0% | |
| GAAGAAGGAGAAGGTTGAGG+AGG | + | chr5.3:27686308-27686327 | MS.gene91907:CDS | 50.0% | |
| GAGGAGGAGAATGTGAAAGG+TGG | + | chr5.3:27686324-27686343 | MS.gene91907:CDS | 50.0% | |
| GCTGCAACAAGAATGCAACC+CGG | - | chr5.3:27689315-27689334 | None:intergenic | 50.0% | |
| GTAGAGGGATCAGAGAGACT+TGG | - | chr5.3:27690523-27690542 | None:intergenic | 50.0% | |
| TCATCTCGCAATCCTCGAAG+CGG | + | chr5.3:27686108-27686127 | MS.gene91907:CDS | 50.0% | |
| TGAAGTGCAAACCAGACGCT+GGG | + | chr5.3:27689525-27689544 | MS.gene91907:intron | 50.0% | |
| TGGGACCAAATGCCAAGAGA+GGG | + | chr5.3:27690476-27690495 | MS.gene91907:CDS | 50.0% | |
| TTTCGCTTCGGAAGAAGTGG+CGG | + | chr5.3:27686221-27686240 | MS.gene91907:CDS | 50.0% | |
| ! | AAGAGCTTTATGGGCCGGTT+TGG | - | chr5.3:27687384-27687403 | None:intergenic | 50.0% |
| ! | CCATCGCCTCCTTTGTTTAG+AGG | + | chr5.3:27689577-27689596 | MS.gene91907:intron | 50.0% |
| ! | CGGTGACCACTACTTGCTTT+TGG | - | chr5.3:27689295-27689314 | None:intergenic | 50.0% |
| ! | GAATAGCTTGCCTAGTCCCT+AGG | + | chr5.3:27688239-27688258 | MS.gene91907:intron | 50.0% |
| ! | GCATACGTGTCAGTTTCTGG+CGG | - | chr5.3:27687260-27687279 | None:intergenic | 50.0% |
| ! | TGGTTTGCACTTCACAGCAG+AGG | - | chr5.3:27689519-27689538 | None:intergenic | 50.0% |
| ! | TGTTGTTGGGAGTTTGGTGG+TGG | - | chr5.3:27686076-27686095 | None:intergenic | 50.0% |
| !! | AAGAGCTCTAAGAGCCTGCT+TGG | - | chr5.3:27686934-27686953 | None:intergenic | 50.0% |
| !! | ACGTTGGTGTTGGGACATGT+CGG | + | chr5.3:27687761-27687780 | MS.gene91907:intron | 50.0% |
| !! | GTGCTCGTGTCTTTGGTGTT+AGG | - | chr5.3:27686182-27686201 | None:intergenic | 50.0% |
| AACAAAGGAGGCGATGGCAG+TGG | - | chr5.3:27689574-27689593 | None:intergenic | 55.0% | |
| AACACTGCCCTTCCCTCTCT+TGG | - | chr5.3:27690491-27690510 | None:intergenic | 55.0% | |
| AAGACACGAGCACCATGGGA+AGG | + | chr5.3:27686189-27686208 | MS.gene91907:CDS | 55.0% | |
| ACGAAGCATGGGAATCAGCG+TGG | + | chr5.3:27686145-27686164 | MS.gene91907:CDS | 55.0% | |
| ACTGCCATGTTGCGTTGCAG+TGG | + | chr5.3:27689240-27689259 | MS.gene91907:intron | 55.0% | |
| CACCAAAGACACGAGCACCA+TGG | + | chr5.3:27686184-27686203 | MS.gene91907:CDS | 55.0% | |
| CCCTTCCCTCTCTTGGCATT+TGG | - | chr5.3:27690484-27690503 | None:intergenic | 55.0% | |
| CTGCCATGTTGCGTTGCAGT+GGG | + | chr5.3:27689241-27689260 | MS.gene91907:intron | 55.0% | |
| CTTGAGGAGGCGAAATTGGG+GGG | + | chr5.3:27686435-27686454 | MS.gene91907:CDS | 55.0% | |
| GAAGTGCAAACCAGACGCTG+GGG | + | chr5.3:27689526-27689545 | MS.gene91907:intron | 55.0% | |
| GCGATGGCAGTGGTTAGAGA+CGG | - | chr5.3:27689564-27689583 | None:intergenic | 55.0% | |
| GTGAAGTGCAAACCAGACGC+TGG | + | chr5.3:27689524-27689543 | MS.gene91907:intron | 55.0% | |
| GTGGGACCAAATGCCAAGAG+AGG | + | chr5.3:27690475-27690494 | MS.gene91907:CDS | 55.0% | |
| TCCCATGGTGCTCGTGTCTT+TGG | - | chr5.3:27686189-27686208 | None:intergenic | 55.0% | |
| TGGAACACGACACTGTGCGT+GGG | - | chr5.3:27689275-27689294 | None:intergenic | 55.0% | |
| TTGAGGAGGCGAAATTGGGG+GGG | + | chr5.3:27686436-27686455 | MS.gene91907:CDS | 55.0% | |
| TTGGAACACGACACTGTGCG+TGG | - | chr5.3:27689276-27689295 | None:intergenic | 55.0% | |
| ! | AAATTGGGGGGGTGTGGTAG+TGG | + | chr5.3:27686447-27686466 | MS.gene91907:CDS | 55.0% |
| ! | ACCCATCAATTGGCCTCCTC+CGG | - | chr5.3:27690435-27690454 | None:intergenic | 55.0% |
| ! | GTCAGTCCTGTATAGCGGAG+CGG | - | chr5.3:27689958-27689977 | None:intergenic | 55.0% |
| !! | GCATGCTGGGCTTTGGAGTA+AGG | + | chr5.3:27686401-27686420 | MS.gene91907:CDS | 55.0% |
| !! | GGGGGTGTGGTAGTGGTAAT+GGG | + | chr5.3:27686454-27686473 | MS.gene91907:CDS | 55.0% |
| !! | GGGGTGTGGTAGTGGTAATG+GGG | + | chr5.3:27686455-27686474 | MS.gene91907:CDS | 55.0% |
| AGCCGGAGGAGGCCAATTGA+TGG | + | chr5.3:27690430-27690449 | MS.gene91907:CDS | 60.0% | |
| CATTCGTCTTCGCCGCTTCG+AGG | - | chr5.3:27686123-27686142 | None:intergenic | 60.0% | |
| CCACCCACTGCAACGCAACA+TGG | - | chr5.3:27689247-27689266 | None:intergenic | 60.0% | |
| CCATGTTGCGTTGCAGTGGG+TGG | + | chr5.3:27689244-27689263 | MS.gene91907:intron | 60.0% | |
| CTCGAAGCGGCGAAGACGAA+TGG | + | chr5.3:27686121-27686140 | MS.gene91907:CDS | 60.0% | |
| GAACACGACACTGTGCGTGG+GGG | - | chr5.3:27689273-27689292 | None:intergenic | 60.0% | |
| GCAACATGGCAGTGTGACGG+CGG | - | chr5.3:27689233-27689252 | None:intergenic | 60.0% | |
| GCCGGAGGAGGCCAATTGAT+GGG | + | chr5.3:27690431-27690450 | MS.gene91907:CDS | 60.0% | |
| GGAACACGACACTGTGCGTG+GGG | - | chr5.3:27689274-27689293 | None:intergenic | 60.0% | |
| GGAGGAGGCCAATTGATGGG+TGG | + | chr5.3:27690434-27690453 | MS.gene91907:CDS | 60.0% | |
| GGCAGTGGTTAGAGACGGCT+GGG | - | chr5.3:27689559-27689578 | None:intergenic | 60.0% | |
| TGGCAGTGGTTAGAGACGGC+TGG | - | chr5.3:27689560-27689579 | None:intergenic | 60.0% | |
| TGTTGCGTTGCAGTGGGTGG+CGG | + | chr5.3:27689247-27689266 | MS.gene91907:intron | 60.0% | |
| TTAGCGGCCATCCTGCAACC+CGG | + | chr5.3:27689902-27689921 | MS.gene91907:intron | 60.0% | |
| !! | GGGGGGTGTGGTAGTGGTAA+TGG | + | chr5.3:27686453-27686472 | MS.gene91907:CDS | 60.0% |
| !! | TTCGGAAGAAGTGGCGGACG+CGG | + | chr5.3:27686227-27686246 | MS.gene91907:CDS | 60.0% |
| GAGGCGAAATTGGGGGGGTG+TGG | + | chr5.3:27686441-27686460 | MS.gene91907:CDS | 65.0% | |
| !! | ATAGCGGGCTACCGGGTTGC+AGG | - | chr5.3:27689916-27689935 | None:intergenic | 65.0% |
| !! | CGCGGAGACGAAGGCGTTTG+TGG | + | chr5.3:27686245-27686264 | MS.gene91907:CDS | 65.0% |
| CGGGCTACCGGGTTGCAGGA+TGG | - | chr5.3:27689912-27689931 | None:intergenic | 70.0% | |
| GCTCGGCCGCTCCGCTATAC+AGG | + | chr5.3:27689949-27689968 | MS.gene91907:intron | 70.0% | |
| GGGACTGAGTCCCCAGCGTC+TGG | - | chr5.3:27689539-27689558 | None:intergenic | 70.0% | |
| !! | AGTGGCGGACGCGGAGACGA+AGG | + | chr5.3:27686236-27686255 | MS.gene91907:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 27686009 | 27690606 | 27686009 | ID=MS.gene91907 |
| chr5.3 | mRNA | 27686009 | 27690606 | 27686009 | ID=MS.gene91907.t1;Parent=MS.gene91907 |
| chr5.3 | exon | 27686009 | 27686514 | 27686009 | ID=MS.gene91907.t1.exon1;Parent=MS.gene91907.t1 |
| chr5.3 | CDS | 27686009 | 27686514 | 27686009 | ID=cds.MS.gene91907.t1;Parent=MS.gene91907.t1 |
| chr5.3 | exon | 27690099 | 27690285 | 27690099 | ID=MS.gene91907.t1.exon2;Parent=MS.gene91907.t1 |
| chr5.3 | CDS | 27690099 | 27690285 | 27690099 | ID=cds.MS.gene91907.t1;Parent=MS.gene91907.t1 |
| chr5.3 | exon | 27690400 | 27690606 | 27690400 | ID=MS.gene91907.t1.exon3;Parent=MS.gene91907.t1 |
| chr5.3 | CDS | 27690400 | 27690606 | 27690400 | ID=cds.MS.gene91907.t1;Parent=MS.gene91907.t1 |
| Gene Sequence |
| Protein sequence |
