AlfalfaGEDB | MS.gene41121

M. sativa cultivar XinJiangDaYe / MS.gene41121

KEGG: K14689
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41121.t1	XP_013456160.1	78.4	148	2	2	1	118	227	374	4.60E-53	217.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41121.t1	Q6DBM8	52.1	117	39	2	19	118	237	353	1.5e-28	127.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41121.t1	A0A072ULB2	78.4	148	2	2	1	118	227	374	3.3e-53	217.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049159	MS.gene41121	0.85261	4.12E-61	-1.69E-46
MS.gene049254	MS.gene41121	0.857708	1.36E-62	-1.69E-46
MS.gene049343	MS.gene41121	0.832484	9.21E-56	-1.69E-46
MS.gene049404	MS.gene41121	0.813118	3.01E-51	-1.69E-46
MS.gene049435	MS.gene41121	0.820191	7.81E-53	-1.69E-46
MS.gene049452	MS.gene41121	0.841037	6.06E-58	-1.69E-46
MS.gene049647	MS.gene41121	0.800616	1.33E-48	-1.69E-46
MS.gene049669	MS.gene41121	0.809064	2.28E-50	-1.69E-46
MS.gene049850	MS.gene41121	0.819276	1.26E-52	-1.69E-46
MS.gene049873	MS.gene41121	0.816725	4.77E-52	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41121.t1	MTR_4g064893	78.378	148	2	2	1	118	227	374	7.52e-72	220
MS.gene41121.t1	MTR_2g036390	47.899	119	45	1	18	119	269	387	1.55e-28	107
MS.gene41121.t1	MTR_8g024240	52.381	105	33	2	18	105	247	351	1.47e-27	105

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41121.t1	AT2G29410	51.695	118	40	2	18	118	236	353	5.78e-36	127
MS.gene41121.t1	AT3G61940	51.376	109	36	2	18	109	196	304	1.68e-28	106
MS.gene41121.t1	AT3G58810	48.800	125	46	3	18	124	254	378	7.38e-28	105
MS.gene41121.t1	AT3G58810	48.800	125	46	3	18	124	293	417	1.37e-27	105
MS.gene41121.t1	AT2G46800	47.059	119	46	2	18	119	260	378	2.94e-27	104
MS.gene41121.t1	AT2G46800	47.059	119	46	2	18	119	260	378	2.94e-27	104
MS.gene41121.t1	AT2G46800	47.059	119	46	2	18	119	260	378	2.94e-27	104
MS.gene41121.t1	AT2G46800	47.059	119	46	2	18	119	260	378	2.94e-27	104
MS.gene41121.t1	AT2G46800	47.059	119	46	2	18	119	260	378	2.94e-27	104

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Find 27 sgRNAs with CRISPR-Local

Find 49 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCAATGGAATTTATGCC+AGG	0.476599	4.1:+35990497	None:intergenic
AAATGGTCTTAGATGTATCA+AGG	0.494424	4.1:-35990600	MS.gene41121:CDS
AACCTTACCATGCTTTCAAA+TGG	0.457120	4.1:-35990878	MS.gene41121:intron
AATCACAGAAAGTAAATCAA+TGG	0.499089	4.1:+35990484	None:intergenic
AATGGTCTTAGATGTATCAA+GGG	0.613237	4.1:-35990599	MS.gene41121:CDS
AATGTCATTCAGCTGGAAAA+TGG	0.445646	4.1:-35990617	MS.gene41121:CDS
ACTACCTAAAATAACTGATG+AGG	0.620549	4.1:-35990903	MS.gene41121:CDS
ACTGATATGATTCAATCTTT+TGG	0.253584	4.1:-35990797	MS.gene41121:CDS
AGATCAACAATAAACCATTC+TGG	0.344512	4.1:+35990740	None:intergenic
AGGTTCACGATTTGCATGTT+TGG	0.334194	4.1:-35990568	MS.gene41121:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATCAATGGAATTTATGCC+AGG	+	chr4.1:35990493-35990512	None:intergenic	30.0%
ACTACCTAAAATAACTGATG+AGG	-	chr4.1:35990084-35990103	MS.gene41121:intron	30.0%
AGATCAACAATAAACCATTC+TGG	+	chr4.1:35990250-35990269	None:intergenic	30.0%
CCAAAAATATTCCTAAGCAT+TGG	+	chr4.1:35990319-35990338	None:intergenic	30.0%
GCTGTATCAAACAACATATT+CGG	-	chr4.1:35990755-35990774	MS.gene41121:CDS	30.0%
GTAACGATACAAATTGAGTA+AGG	-	chr4.1:35990562-35990581	MS.gene41121:CDS	30.0%
TGAATGACATTAATCTCACT+TGG	+	chr4.1:35990361-35990380	None:intergenic	30.0%
TTGAAAATGCACATGTTTCA+AGG	-	chr4.1:35990710-35990729	MS.gene41121:intron	30.0%
AACCTTACCATGCTTTCAAA+TGG	-	chr4.1:35990109-35990128	MS.gene41121:intron	35.0%
AATGTCATTCAGCTGGAAAA+TGG	-	chr4.1:35990370-35990389	MS.gene41121:intron	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.1	gene	35990076	35990933	35990076	ID=MS.gene41121
chr4.1	mRNA	35990076	35990933	35990076	ID=MS.gene41121.t1;Parent=MS.gene41121
chr4.1	exon	35990879	35990933	35990879	ID=MS.gene41121.t1.exon1;Parent=MS.gene41121.t1
chr4.1	CDS	35990879	35990933	35990879	ID=cds.MS.gene41121.t1;Parent=MS.gene41121.t1
chr4.1	exon	35990755	35990839	35990755	ID=MS.gene41121.t1.exon2;Parent=MS.gene41121.t1
chr4.1	CDS	35990755	35990839	35990755	ID=cds.MS.gene41121.t1;Parent=MS.gene41121.t1
chr4.1	exon	35990490	35990703	35990490	ID=MS.gene41121.t1.exon3;Parent=MS.gene41121.t1
chr4.1	CDS	35990490	35990703	35990490	ID=cds.MS.gene41121.t1;Parent=MS.gene41121.t1
chr4.1	exon	35990278	35990311	35990278	ID=MS.gene41121.t1.exon4;Parent=MS.gene41121.t1
chr4.1	CDS	35990278	35990311	35990278	ID=cds.MS.gene41121.t1;Parent=MS.gene41121.t1
chr4.1	exon	35990076	35990101	35990076	ID=MS.gene41121.t1.exon5;Parent=MS.gene41121.t1
chr4.1	CDS	35990076	35990101	35990076	ID=cds.MS.gene41121.t1;Parent=MS.gene41121.t1

Gene Sequence

>MS.gene41121

ATGGAGGAACTACCTAAAATAACTGATGAGGAGAACCTTACCATGCTTTCAAATGGTAAGAAGAATACTAATGTTTTGAATATAAATATCCAAGGGGCTTATTTGCATGTGATGACTGATATGATTCAATCTTTTGGAGTGATGATTGCTGGAGGAGTAATATGGGCTAAACCAGAATGGTTTATTGTTGATCTTTTATGTACTCTAATATTCTCTGTTTTATCCTTAAGTACTACTCTGCCAATGCTTAGGAATATTTTTGGCATTCTAATGGAGAGAACGCCAAGTGAGATTAATGTCATTCAGCTGGAAAATGGTCTTAGATGTATCAAGGGAGTGCAGGAGGTTCACGATTTGCATGTTTGGGCTATAACAGTGGGAAAACTGTTTCTATCTTGTCATGTAGTGGCTGAACCTGGCATAAATTCCATTGATTTACTTTCTGTGATTAAACAATATTGTGAAAACACTTATCAAATACAACATGTAACGATACAAATTGAGTAAGGTTATATTCTTTTCTGTTCCATTATTTTCACCTTATTAATTGTTTGTTTGACGCATACTCATATAGATTCACAAGACGTGCTTTATTCTATTCTATTTTGACTTTGAACAACAGAAATACCAGTACTTGAAAATGCACATGTTTCAAGGTCATAACCAATTTTATAAGACAGCTGTATCAAACAACATATTCGGTCATTTTATTCGCTATTTGGTCATTTTGATGTTCAATCAAACAACATATTTCTTGTTCCCTTTAAAATGCAACTATTTGGTTTTGCTATTTCTCGTTCTATTTAAAATTCAACTATTTGATTTTGCTAAGGAGGAGCGAAACACCTTGAAAAGTAG

Protein sequence

>MS.gene41121.t1

MEELPKITDEENLTMLSNGAYLHVMTDMIQSFGVMIAGGVIWAKPECTTLPMLRNIFGILMERTPSEINVIQLENGLRCIKGVQEVHDLHVWAITVGKLFLSCHVVAEPGINSIDLLSKYQYLKMHMFQGGAKHLEK