Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41121.t1 | XP_013456160.1 | 78.4 | 148 | 2 | 2 | 1 | 118 | 227 | 374 | 4.60E-53 | 217.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41121.t1 | Q6DBM8 | 52.1 | 117 | 39 | 2 | 19 | 118 | 237 | 353 | 1.5e-28 | 127.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41121.t1 | A0A072ULB2 | 78.4 | 148 | 2 | 2 | 1 | 118 | 227 | 374 | 3.3e-53 | 217.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene41121 | 0.85261 | 4.12E-61 | -1.69E-46 |
| MS.gene049254 | MS.gene41121 | 0.857708 | 1.36E-62 | -1.69E-46 |
| MS.gene049343 | MS.gene41121 | 0.832484 | 9.21E-56 | -1.69E-46 |
| MS.gene049404 | MS.gene41121 | 0.813118 | 3.01E-51 | -1.69E-46 |
| MS.gene049435 | MS.gene41121 | 0.820191 | 7.81E-53 | -1.69E-46 |
| MS.gene049452 | MS.gene41121 | 0.841037 | 6.06E-58 | -1.69E-46 |
| MS.gene049647 | MS.gene41121 | 0.800616 | 1.33E-48 | -1.69E-46 |
| MS.gene049669 | MS.gene41121 | 0.809064 | 2.28E-50 | -1.69E-46 |
| MS.gene049850 | MS.gene41121 | 0.819276 | 1.26E-52 | -1.69E-46 |
| MS.gene049873 | MS.gene41121 | 0.816725 | 4.77E-52 | -1.69E-46 |
| MS.gene050026 | MS.gene41121 | 0.822485 | 2.31E-53 | -1.69E-46 |
| MS.gene050156 | MS.gene41121 | 0.817802 | 2.73E-52 | -1.69E-46 |
| MS.gene050303 | MS.gene41121 | 0.801268 | 9.76E-49 | -1.69E-46 |
| MS.gene050355 | MS.gene41121 | 0.840879 | 6.67E-58 | -1.69E-46 |
| MS.gene050442 | MS.gene41121 | 0.821509 | 3.89E-53 | -1.69E-46 |
| MS.gene050559 | MS.gene41121 | 0.808991 | 2.36E-50 | -1.69E-46 |
| MS.gene050561 | MS.gene41121 | 0.81398 | 1.94E-51 | -1.69E-46 |
| MS.gene050605 | MS.gene41121 | 0.829367 | 5.36E-55 | -1.69E-46 |
| MS.gene050680 | MS.gene41121 | 0.813708 | 2.23E-51 | -1.69E-46 |
| MS.gene050750 | MS.gene41121 | 0.838297 | 3.13E-57 | -1.69E-46 |
| MS.gene050759 | MS.gene41121 | 0.814288 | 1.66E-51 | -1.69E-46 |
| MS.gene050799 | MS.gene41121 | 0.806502 | 7.97E-50 | -1.69E-46 |
| MS.gene050844 | MS.gene41121 | 0.828912 | 6.90E-55 | -1.69E-46 |
| MS.gene050905 | MS.gene41121 | -0.809777 | 1.60E-50 | -1.69E-46 |
| MS.gene050953 | MS.gene41121 | 0.849897 | 2.41E-60 | -1.69E-46 |
| MS.gene050962 | MS.gene41121 | 0.808244 | 3.41E-50 | -1.69E-46 |
| MS.gene051181 | MS.gene41121 | 0.834932 | 2.25E-56 | -1.69E-46 |
| MS.gene051247 | MS.gene41121 | 0.817592 | 3.04E-52 | -1.69E-46 |
| MS.gene051265 | MS.gene41121 | 0.810347 | 1.21E-50 | -1.69E-46 |
| MS.gene051368 | MS.gene41121 | 0.832605 | 8.59E-56 | -1.69E-46 |
| MS.gene051594 | MS.gene41121 | 0.820932 | 5.28E-53 | -1.69E-46 |
| MS.gene051719 | MS.gene41121 | 0.809619 | 1.73E-50 | -1.69E-46 |
| MS.gene051744 | MS.gene41121 | 0.825444 | 4.67E-54 | -1.69E-46 |
| MS.gene052012 | MS.gene41121 | 0.857483 | 1.58E-62 | -1.69E-46 |
| MS.gene052108 | MS.gene41121 | 0.812255 | 4.65E-51 | -1.69E-46 |
| MS.gene052190 | MS.gene41121 | 0.843073 | 1.75E-58 | -1.69E-46 |
| MS.gene052208 | MS.gene41121 | 0.813749 | 2.19E-51 | -1.69E-46 |
| MS.gene052333 | MS.gene41121 | 0.836689 | 8.08E-57 | -1.69E-46 |
| MS.gene052426 | MS.gene41121 | 0.809528 | 1.81E-50 | -1.69E-46 |
| MS.gene052519 | MS.gene41121 | 0.877141 | 7.97E-69 | -1.69E-46 |
| MS.gene052582 | MS.gene41121 | 0.840003 | 1.13E-57 | -1.69E-46 |
| MS.gene052584 | MS.gene41121 | 0.8503 | 1.86E-60 | -1.69E-46 |
| MS.gene052586 | MS.gene41121 | 0.808452 | 3.08E-50 | -1.69E-46 |
| MS.gene052773 | MS.gene41121 | 0.81447 | 1.52E-51 | -1.69E-46 |
| MS.gene052863 | MS.gene41121 | 0.84396 | 1.02E-58 | -1.69E-46 |
| MS.gene052866 | MS.gene41121 | 0.8018 | 7.59E-49 | -1.69E-46 |
| MS.gene052867 | MS.gene41121 | 0.85373 | 1.97E-61 | -1.69E-46 |
| MS.gene052954 | MS.gene41121 | 0.80597 | 1.03E-49 | -1.69E-46 |
| MS.gene053006 | MS.gene41121 | 0.818724 | 1.69E-52 | -1.69E-46 |
| MS.gene053008 | MS.gene41121 | 0.847226 | 1.32E-59 | -1.69E-46 |
| MS.gene053054 | MS.gene41121 | -0.814465 | 1.52E-51 | -1.69E-46 |
| MS.gene053145 | MS.gene41121 | 0.818804 | 1.62E-52 | -1.69E-46 |
| MS.gene053166 | MS.gene41121 | 0.827065 | 1.92E-54 | -1.69E-46 |
| MS.gene053201 | MS.gene41121 | 0.801884 | 7.29E-49 | -1.69E-46 |
| MS.gene053226 | MS.gene41121 | 0.849936 | 2.35E-60 | -1.69E-46 |
| MS.gene053584 | MS.gene41121 | 0.800977 | 1.12E-48 | -1.69E-46 |
| MS.gene053931 | MS.gene41121 | 0.801955 | 7.05E-49 | -1.69E-46 |
| MS.gene053974 | MS.gene41121 | 0.801444 | 8.98E-49 | -1.69E-46 |
| MS.gene05414 | MS.gene41121 | 0.839739 | 1.32E-57 | -1.69E-46 |
| MS.gene05415 | MS.gene41121 | 0.842211 | 2.97E-58 | -1.69E-46 |
| MS.gene054160 | MS.gene41121 | 0.806487 | 8.03E-50 | -1.69E-46 |
| MS.gene054236 | MS.gene41121 | 0.84906 | 4.12E-60 | -1.69E-46 |
| MS.gene054291 | MS.gene41121 | -0.839529 | 1.50E-57 | -1.69E-46 |
| MS.gene054405 | MS.gene41121 | 0.845187 | 4.75E-59 | -1.69E-46 |
| MS.gene054467 | MS.gene41121 | 0.803249 | 3.82E-49 | -1.69E-46 |
| MS.gene054479 | MS.gene41121 | 0.803893 | 2.81E-49 | -1.69E-46 |
| MS.gene054559 | MS.gene41121 | 0.833474 | 5.22E-56 | -1.69E-46 |
| MS.gene05458 | MS.gene41121 | 0.805123 | 1.55E-49 | -1.69E-46 |
| MS.gene054651 | MS.gene41121 | 0.857862 | 1.22E-62 | -1.69E-46 |
| MS.gene054657 | MS.gene41121 | 0.841607 | 4.29E-58 | -1.69E-46 |
| MS.gene054658 | MS.gene41121 | 0.810598 | 1.06E-50 | -1.69E-46 |
| MS.gene05468 | MS.gene41121 | 0.806594 | 7.63E-50 | -1.69E-46 |
| MS.gene054775 | MS.gene41121 | 0.8383 | 3.12E-57 | -1.69E-46 |
| MS.gene054801 | MS.gene41121 | 0.806151 | 9.46E-50 | -1.69E-46 |
| MS.gene054994 | MS.gene41121 | 0.813364 | 2.66E-51 | -1.69E-46 |
| MS.gene05510 | MS.gene41121 | 0.83509 | 2.05E-56 | -1.69E-46 |
| MS.gene055166 | MS.gene41121 | 0.825722 | 4.01E-54 | -1.69E-46 |
| MS.gene055227 | MS.gene41121 | 0.833266 | 5.89E-56 | -1.69E-46 |
| MS.gene055228 | MS.gene41121 | 0.827389 | 1.61E-54 | -1.69E-46 |
| MS.gene055356 | MS.gene41121 | 0.802894 | 4.52E-49 | -1.69E-46 |
| MS.gene055357 | MS.gene41121 | 0.813002 | 3.19E-51 | -1.69E-46 |
| MS.gene055586 | MS.gene41121 | 0.815609 | 8.47E-52 | -1.69E-46 |
| MS.gene055589 | MS.gene41121 | 0.8236 | 1.27E-53 | -1.69E-46 |
| MS.gene055623 | MS.gene41121 | 0.817033 | 4.07E-52 | -1.69E-46 |
| MS.gene055701 | MS.gene41121 | 0.840359 | 9.12E-58 | -1.69E-46 |
| MS.gene055778 | MS.gene41121 | 0.824121 | 9.58E-54 | -1.69E-46 |
| MS.gene055818 | MS.gene41121 | 0.894647 | 2.02E-75 | -1.69E-46 |
| MS.gene055841 | MS.gene41121 | 0.836007 | 1.20E-56 | -1.69E-46 |
| MS.gene055926 | MS.gene41121 | 0.830067 | 3.62E-55 | -1.69E-46 |
| MS.gene056050 | MS.gene41121 | 0.803978 | 2.69E-49 | -1.69E-46 |
| MS.gene056162 | MS.gene41121 | 0.840071 | 1.08E-57 | -1.69E-46 |
| MS.gene056173 | MS.gene41121 | 0.816441 | 5.52E-52 | -1.69E-46 |
| MS.gene056174 | MS.gene41121 | 0.822869 | 1.88E-53 | -1.69E-46 |
| MS.gene056252 | MS.gene41121 | 0.812469 | 4.17E-51 | -1.69E-46 |
| MS.gene056366 | MS.gene41121 | 0.841582 | 4.35E-58 | -1.69E-46 |
| MS.gene056498 | MS.gene41121 | 0.822045 | 2.92E-53 | -1.69E-46 |
| MS.gene056506 | MS.gene41121 | 0.83679 | 7.61E-57 | -1.69E-46 |
| MS.gene056595 | MS.gene41121 | 0.829317 | 5.51E-55 | -1.69E-46 |
| MS.gene05659 | MS.gene41121 | 0.802923 | 4.45E-49 | -1.69E-46 |
| MS.gene056776 | MS.gene41121 | 0.833973 | 3.92E-56 | -1.69E-46 |
| MS.gene056779 | MS.gene41121 | 0.801975 | 6.99E-49 | -1.69E-46 |
| MS.gene05690 | MS.gene41121 | 0.80233 | 5.91E-49 | -1.69E-46 |
| MS.gene057026 | MS.gene41121 | 0.826844 | 2.17E-54 | -1.69E-46 |
| MS.gene057060 | MS.gene41121 | 0.852936 | 3.33E-61 | -1.69E-46 |
| MS.gene057208 | MS.gene41121 | 0.863942 | 1.74E-64 | -1.69E-46 |
| MS.gene057314 | MS.gene41121 | 0.80219 | 6.31E-49 | -1.69E-46 |
| MS.gene057444 | MS.gene41121 | 0.831564 | 1.55E-55 | -1.69E-46 |
| MS.gene057598 | MS.gene41121 | 0.84681 | 1.72E-59 | -1.69E-46 |
| MS.gene057693 | MS.gene41121 | 0.854649 | 1.07E-61 | -1.69E-46 |
| MS.gene057855 | MS.gene41121 | 0.812959 | 3.26E-51 | -1.69E-46 |
| MS.gene057915 | MS.gene41121 | 0.801996 | 6.92E-49 | -1.69E-46 |
| MS.gene058009 | MS.gene41121 | 0.822096 | 2.84E-53 | -1.69E-46 |
| MS.gene058010 | MS.gene41121 | 0.808564 | 2.91E-50 | -1.69E-46 |
| MS.gene058037 | MS.gene41121 | 0.833202 | 6.11E-56 | -1.69E-46 |
| MS.gene058146 | MS.gene41121 | 0.809518 | 1.82E-50 | -1.69E-46 |
| MS.gene058548 | MS.gene41121 | 0.837922 | 3.91E-57 | -1.69E-46 |
| MS.gene058549 | MS.gene41121 | 0.818291 | 2.12E-52 | -1.69E-46 |
| MS.gene058595 | MS.gene41121 | 0.807443 | 5.04E-50 | -1.69E-46 |
| MS.gene058625 | MS.gene41121 | 0.846057 | 2.76E-59 | -1.69E-46 |
| MS.gene058783 | MS.gene41121 | 0.821528 | 3.85E-53 | -1.69E-46 |
| MS.gene058829 | MS.gene41121 | 0.804555 | 2.04E-49 | -1.69E-46 |
| MS.gene058979 | MS.gene41121 | 0.857606 | 1.46E-62 | -1.69E-46 |
| MS.gene059272 | MS.gene41121 | 0.800557 | 1.36E-48 | -1.69E-46 |
| MS.gene059283 | MS.gene41121 | 0.802383 | 5.76E-49 | -1.69E-46 |
| MS.gene059382 | MS.gene41121 | 0.824313 | 8.64E-54 | -1.69E-46 |
| MS.gene05954 | MS.gene41121 | 0.832843 | 7.50E-56 | -1.69E-46 |
| MS.gene059550 | MS.gene41121 | 0.820553 | 6.45E-53 | -1.69E-46 |
| MS.gene059557 | MS.gene41121 | 0.803723 | 3.04E-49 | -1.69E-46 |
| MS.gene059584 | MS.gene41121 | 0.813134 | 2.98E-51 | -1.69E-46 |
| MS.gene059789 | MS.gene41121 | 0.816168 | 6.35E-52 | -1.69E-46 |
| MS.gene05979 | MS.gene41121 | 0.837407 | 5.29E-57 | -1.69E-46 |
| MS.gene059842 | MS.gene41121 | 0.828551 | 8.44E-55 | -1.69E-46 |
| MS.gene060011 | MS.gene41121 | 0.833819 | 4.28E-56 | -1.69E-46 |
| MS.gene060137 | MS.gene41121 | -0.83567 | 1.47E-56 | -1.69E-46 |
| MS.gene060310 | MS.gene41121 | 0.803384 | 3.58E-49 | -1.69E-46 |
| MS.gene060322 | MS.gene41121 | 0.861572 | 9.34E-64 | -1.69E-46 |
| MS.gene060429 | MS.gene41121 | 0.824349 | 8.47E-54 | -1.69E-46 |
| MS.gene060521 | MS.gene41121 | 0.834618 | 2.70E-56 | -1.69E-46 |
| MS.gene06052 | MS.gene41121 | 0.804204 | 2.42E-49 | -1.69E-46 |
| MS.gene060572 | MS.gene41121 | 0.844101 | 9.31E-59 | -1.69E-46 |
| MS.gene060634 | MS.gene41121 | -0.819306 | 1.24E-52 | -1.69E-46 |
| MS.gene060683 | MS.gene41121 | 0.80379 | 2.95E-49 | -1.69E-46 |
| MS.gene060685 | MS.gene41121 | 0.809021 | 2.32E-50 | -1.69E-46 |
| MS.gene060781 | MS.gene41121 | 0.829429 | 5.17E-55 | -1.69E-46 |
| MS.gene060802 | MS.gene41121 | 0.81008 | 1.38E-50 | -1.69E-46 |
| MS.gene060803 | MS.gene41121 | 0.832707 | 8.11E-56 | -1.69E-46 |
| MS.gene060907 | MS.gene41121 | 0.800187 | 1.62E-48 | -1.69E-46 |
| MS.gene060998 | MS.gene41121 | 0.80437 | 2.23E-49 | -1.69E-46 |
| MS.gene061040 | MS.gene41121 | -0.828472 | 8.82E-55 | -1.69E-46 |
| MS.gene061114 | MS.gene41121 | -0.800742 | 1.25E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41121.t1 | MTR_4g064893 | 78.378 | 148 | 2 | 2 | 1 | 118 | 227 | 374 | 7.52e-72 | 220 |
| MS.gene41121.t1 | MTR_2g036390 | 47.899 | 119 | 45 | 1 | 18 | 119 | 269 | 387 | 1.55e-28 | 107 |
| MS.gene41121.t1 | MTR_8g024240 | 52.381 | 105 | 33 | 2 | 18 | 105 | 247 | 351 | 1.47e-27 | 105 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41121.t1 | AT2G29410 | 51.695 | 118 | 40 | 2 | 18 | 118 | 236 | 353 | 5.78e-36 | 127 |
| MS.gene41121.t1 | AT3G61940 | 51.376 | 109 | 36 | 2 | 18 | 109 | 196 | 304 | 1.68e-28 | 106 |
| MS.gene41121.t1 | AT3G58810 | 48.800 | 125 | 46 | 3 | 18 | 124 | 254 | 378 | 7.38e-28 | 105 |
| MS.gene41121.t1 | AT3G58810 | 48.800 | 125 | 46 | 3 | 18 | 124 | 293 | 417 | 1.37e-27 | 105 |
| MS.gene41121.t1 | AT2G46800 | 47.059 | 119 | 46 | 2 | 18 | 119 | 260 | 378 | 2.94e-27 | 104 |
| MS.gene41121.t1 | AT2G46800 | 47.059 | 119 | 46 | 2 | 18 | 119 | 260 | 378 | 2.94e-27 | 104 |
| MS.gene41121.t1 | AT2G46800 | 47.059 | 119 | 46 | 2 | 18 | 119 | 260 | 378 | 2.94e-27 | 104 |
| MS.gene41121.t1 | AT2G46800 | 47.059 | 119 | 46 | 2 | 18 | 119 | 260 | 378 | 2.94e-27 | 104 |
| MS.gene41121.t1 | AT2G46800 | 47.059 | 119 | 46 | 2 | 18 | 119 | 260 | 378 | 2.94e-27 | 104 |
Find 27 sgRNAs with CRISPR-Local
Find 49 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTGATATGATTCAATCTTT+TGG | 0.253584 | 4.1:-35990797 | MS.gene41121:CDS |
| AGGTTCACGATTTGCATGTT+TGG | 0.334194 | 4.1:-35990568 | MS.gene41121:CDS |
| AGATCAACAATAAACCATTC+TGG | 0.344512 | 4.1:+35990740 | None:intergenic |
| GGTTCACGATTTGCATGTTT+GGG | 0.363513 | 4.1:-35990567 | MS.gene41121:CDS |
| TTGAAAATGCACATGTTTCA+AGG | 0.384457 | 4.1:-35990277 | MS.gene41121:intron |
| TGATTGCTGGAGGAGTAATA+TGG | 0.423479 | 4.1:-35990769 | MS.gene41121:CDS |
| AATGTCATTCAGCTGGAAAA+TGG | 0.445646 | 4.1:-35990617 | MS.gene41121:CDS |
| CTTCTTACCATTTGAAAGCA+TGG | 0.454505 | 4.1:+35990871 | None:intergenic |
| AACCTTACCATGCTTTCAAA+TGG | 0.457120 | 4.1:-35990878 | MS.gene41121:intron |
| AAATCAATGGAATTTATGCC+AGG | 0.476599 | 4.1:+35990497 | None:intergenic |
| GTACTACTCTGCCAATGCTT+AGG | 0.481166 | 4.1:-35990682 | MS.gene41121:CDS |
| TGAGATTAATGTCATTCAGC+TGG | 0.490788 | 4.1:-35990624 | MS.gene41121:CDS |
| AAATGGTCTTAGATGTATCA+AGG | 0.494424 | 4.1:-35990600 | MS.gene41121:CDS |
| AATCACAGAAAGTAAATCAA+TGG | 0.499089 | 4.1:+35990484 | None:intergenic |
| GTTTCTATCTTGTCATGTAG+TGG | 0.519825 | 4.1:-35990525 | MS.gene41121:CDS |
| CATGTTTGGGCTATAACAGT+GGG | 0.523467 | 4.1:-35990554 | MS.gene41121:CDS |
| TACCATTTGAAAGCATGGTA+AGG | 0.531755 | 4.1:+35990876 | None:intergenic |
| TAGATGTATCAAGGGAGTGC+AGG | 0.541398 | 4.1:-35990591 | MS.gene41121:CDS |
| TGTCATGTAGTGGCTGAACC+TGG | 0.544206 | 4.1:-35990515 | MS.gene41121:CDS |
| GCATGTTTGGGCTATAACAG+TGG | 0.554794 | 4.1:-35990555 | MS.gene41121:CDS |
| GATTGCTGGAGGAGTAATAT+GGG | 0.578367 | 4.1:-35990768 | MS.gene41121:CDS |
| TAATATGGGCTAAACCAGAA+TGG | 0.603141 | 4.1:-35990754 | MS.gene41121:intron |
| TGAATGACATTAATCTCACT+TGG | 0.605618 | 4.1:+35990629 | None:intergenic |
| AATGGTCTTAGATGTATCAA+GGG | 0.613237 | 4.1:-35990599 | MS.gene41121:CDS |
| ACTACCTAAAATAACTGATG+AGG | 0.620549 | 4.1:-35990903 | MS.gene41121:CDS |
| ATGTATCAAGGGAGTGCAGG+AGG | 0.626208 | 4.1:-35990588 | MS.gene41121:CDS |
| TTTGGAGTGATGATTGCTGG+AGG | 0.665023 | 4.1:-35990779 | MS.gene41121:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAATAAGGTGAAAATAA+TGG | + | chr4.1:35990605-35990624 | None:intergenic | 15.0% |
| !!! | TTTTGAATATAAATATCCAA+GGG | - | chr4.1:35990149-35990168 | MS.gene41121:intron | 15.0% |
| !! | TTTGAATATAAATATCCAAG+GGG | - | chr4.1:35990150-35990169 | MS.gene41121:intron | 20.0% |
| !!! | GTTTTGAATATAAATATCCA+AGG | - | chr4.1:35990148-35990167 | MS.gene41121:intron | 20.0% |
| ! | AATCACAGAAAGTAAATCAA+TGG | + | chr4.1:35990506-35990525 | None:intergenic | 25.0% |
| ! | ATACAGCTGTCTTATAAAAT+TGG | + | chr4.1:35990742-35990761 | None:intergenic | 25.0% |
| ! | CGTCAAACAAACAATTAATA+AGG | + | chr4.1:35990617-35990636 | None:intergenic | 25.0% |
| !! | ACCAAATAGTTGCATTTTAA+AGG | + | chr4.1:35990839-35990858 | None:intergenic | 25.0% |
| !! | ACTGATATGATTCAATCTTT+TGG | - | chr4.1:35990190-35990209 | MS.gene41121:intron | 25.0% |
| !! | CCAAATAGTTGCATTTTAAA+GGG | + | chr4.1:35990838-35990857 | None:intergenic | 25.0% |
| !!! | GAATATTTTTGGCATTCTAA+TGG | - | chr4.1:35990327-35990346 | MS.gene41121:intron | 25.0% |
| !!! | TCAACTATTTGATTTTGCTA+AGG | - | chr4.1:35990886-35990905 | MS.gene41121:CDS | 25.0% |
| AAATCAATGGAATTTATGCC+AGG | + | chr4.1:35990493-35990512 | None:intergenic | 30.0% | |
| ACTACCTAAAATAACTGATG+AGG | - | chr4.1:35990084-35990103 | MS.gene41121:intron | 30.0% | |
| AGATCAACAATAAACCATTC+TGG | + | chr4.1:35990250-35990269 | None:intergenic | 30.0% | |
| CCAAAAATATTCCTAAGCAT+TGG | + | chr4.1:35990319-35990338 | None:intergenic | 30.0% | |
| GCTGTATCAAACAACATATT+CGG | - | chr4.1:35990755-35990774 | MS.gene41121:CDS | 30.0% | |
| GTAACGATACAAATTGAGTA+AGG | - | chr4.1:35990562-35990581 | MS.gene41121:CDS | 30.0% | |
| TGAATGACATTAATCTCACT+TGG | + | chr4.1:35990361-35990380 | None:intergenic | 30.0% | |
| TTGAAAATGCACATGTTTCA+AGG | - | chr4.1:35990710-35990729 | MS.gene41121:intron | 30.0% | |
| ! | AAATGGTCTTAGATGTATCA+AGG | - | chr4.1:35990387-35990406 | MS.gene41121:intron | 30.0% |
| ! | AATGGTCTTAGATGTATCAA+GGG | - | chr4.1:35990388-35990407 | MS.gene41121:intron | 30.0% |
| ! | CCAATGCTTAGGAATATTTT+TGG | - | chr4.1:35990316-35990335 | MS.gene41121:intron | 30.0% |
| !! | ACTATTTGATTTTGCTAAGG+AGG | - | chr4.1:35990889-35990908 | MS.gene41121:CDS | 30.0% |
| !! | CCCTTTAAAATGCAACTATT+TGG | - | chr4.1:35990835-35990854 | MS.gene41121:intron | 30.0% |
| !! | TTCTCCTCATCAGTTATTTT+AGG | + | chr4.1:35990091-35990110 | None:intergenic | 30.0% |
| AACCTTACCATGCTTTCAAA+TGG | - | chr4.1:35990109-35990128 | MS.gene41121:intron | 35.0% | |
| AATGTCATTCAGCTGGAAAA+TGG | - | chr4.1:35990370-35990389 | MS.gene41121:intron | 35.0% | |
| CTTCTTACCATTTGAAAGCA+TGG | + | chr4.1:35990119-35990138 | None:intergenic | 35.0% | |
| GTTTCTATCTTGTCATGTAG+TGG | - | chr4.1:35990462-35990481 | MS.gene41121:intron | 35.0% | |
| TGAGATTAATGTCATTCAGC+TGG | - | chr4.1:35990363-35990382 | MS.gene41121:intron | 35.0% | |
| ! | TAATATGGGCTAAACCAGAA+TGG | - | chr4.1:35990233-35990252 | MS.gene41121:intron | 35.0% |
| ! | TACCATTTGAAAGCATGGTA+AGG | + | chr4.1:35990114-35990133 | None:intergenic | 35.0% |
| !! | CGGTCATTTTATTCGCTATT+TGG | - | chr4.1:35990775-35990794 | MS.gene41121:CDS | 35.0% |
| !!! | ACATGTGCATTTTCAAGTAC+TGG | + | chr4.1:35990706-35990725 | None:intergenic | 35.0% |
| AGGTTCACGATTTGCATGTT+TGG | - | chr4.1:35990419-35990438 | MS.gene41121:intron | 40.0% | |
| CATGTTTGGGCTATAACAGT+GGG | - | chr4.1:35990433-35990452 | MS.gene41121:intron | 40.0% | |
| CATTGGCAGAGTAGTACTTA+AGG | + | chr4.1:35990302-35990321 | None:intergenic | 40.0% | |
| GATTGCTGGAGGAGTAATAT+GGG | - | chr4.1:35990219-35990238 | MS.gene41121:intron | 40.0% | |
| GGTTCACGATTTGCATGTTT+GGG | - | chr4.1:35990420-35990439 | MS.gene41121:intron | 40.0% | |
| TGATTGCTGGAGGAGTAATA+TGG | - | chr4.1:35990218-35990237 | MS.gene41121:intron | 40.0% | |
| !!! | TCTTTTGGAGTGATGATTGC+TGG | - | chr4.1:35990205-35990224 | MS.gene41121:intron | 40.0% |
| GCATGTTTGGGCTATAACAG+TGG | - | chr4.1:35990432-35990451 | MS.gene41121:intron | 45.0% | |
| GTACTACTCTGCCAATGCTT+AGG | - | chr4.1:35990305-35990324 | MS.gene41121:intron | 45.0% | |
| TCACATGCAAATAAGCCCCT+TGG | + | chr4.1:35990168-35990187 | None:intergenic | 45.0% | |
| ! | TAGATGTATCAAGGGAGTGC+AGG | - | chr4.1:35990396-35990415 | MS.gene41121:intron | 45.0% |
| ! | TTTGGAGTGATGATTGCTGG+AGG | - | chr4.1:35990208-35990227 | MS.gene41121:intron | 45.0% |
| TGTCATGTAGTGGCTGAACC+TGG | - | chr4.1:35990472-35990491 | MS.gene41121:intron | 50.0% | |
| ! | ATGTATCAAGGGAGTGCAGG+AGG | - | chr4.1:35990399-35990418 | MS.gene41121:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 35990076 | 35990933 | 35990076 | ID=MS.gene41121 |
| chr4.1 | mRNA | 35990076 | 35990933 | 35990076 | ID=MS.gene41121.t1;Parent=MS.gene41121 |
| chr4.1 | exon | 35990879 | 35990933 | 35990879 | ID=MS.gene41121.t1.exon1;Parent=MS.gene41121.t1 |
| chr4.1 | CDS | 35990879 | 35990933 | 35990879 | ID=cds.MS.gene41121.t1;Parent=MS.gene41121.t1 |
| chr4.1 | exon | 35990755 | 35990839 | 35990755 | ID=MS.gene41121.t1.exon2;Parent=MS.gene41121.t1 |
| chr4.1 | CDS | 35990755 | 35990839 | 35990755 | ID=cds.MS.gene41121.t1;Parent=MS.gene41121.t1 |
| chr4.1 | exon | 35990490 | 35990703 | 35990490 | ID=MS.gene41121.t1.exon3;Parent=MS.gene41121.t1 |
| chr4.1 | CDS | 35990490 | 35990703 | 35990490 | ID=cds.MS.gene41121.t1;Parent=MS.gene41121.t1 |
| chr4.1 | exon | 35990278 | 35990311 | 35990278 | ID=MS.gene41121.t1.exon4;Parent=MS.gene41121.t1 |
| chr4.1 | CDS | 35990278 | 35990311 | 35990278 | ID=cds.MS.gene41121.t1;Parent=MS.gene41121.t1 |
| chr4.1 | exon | 35990076 | 35990101 | 35990076 | ID=MS.gene41121.t1.exon5;Parent=MS.gene41121.t1 |
| chr4.1 | CDS | 35990076 | 35990101 | 35990076 | ID=cds.MS.gene41121.t1;Parent=MS.gene41121.t1 |
| Gene Sequence |
| Protein sequence |
