AlfalfaGEDB | MS.gene98828

M. sativa cultivar XinJiangDaYe / MS.gene98828

KEGG: K12735
GO: GO:0000413 GO:0003674 GO:0003676 GO:0003755 GO:0003824 GO:0005488 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009987 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0036211 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0046872 GO:0046914 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564
PFAM: PF00076.25 PF00098.26 PF00160.24

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene98828.t1	XP_013453000.1	97	558	17	0	12	569	46	603	1.20E-232	815.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene98828.t1	Q6Q151	78.0	372	72	5	13	381	47	411	4.4e-146	519.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene98828.t1	G7KN14	97.0	558	17	0	12	569	63	620	8.8e-233	815.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049142	MS.gene98828	0.81631	5.91E-52	-1.69E-46
MS.gene049159	MS.gene98828	0.829161	6.01E-55	-1.69E-46
MS.gene049404	MS.gene98828	0.836101	1.14E-56	-1.69E-46
MS.gene049435	MS.gene98828	0.819514	1.12E-52	-1.69E-46
MS.gene049666	MS.gene98828	0.811864	5.66E-51	-1.69E-46
MS.gene049669	MS.gene98828	0.80753	4.83E-50	-1.69E-46
MS.gene049821	MS.gene98828	0.81648	5.41E-52	-1.69E-46
MS.gene049825	MS.gene98828	0.808813	2.58E-50	-1.69E-46
MS.gene049850	MS.gene98828	0.848909	4.54E-60	-1.69E-46
MS.gene049873	MS.gene98828	0.80216	6.40E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene020412	MS.gene98828	PPI
MS.gene052174	MS.gene98828	PPI
MS.gene055771	MS.gene98828	PPI
MS.gene31419	MS.gene98828	PPI
MS.gene98828	MS.gene013049	PPI
MS.gene98828	MS.gene48433	PPI
MS.gene98828	MS.gene031671	PPI
MS.gene98828	MS.gene006634	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene98828.t1	MTR_6g084140	96.601	559	19	0	11	569	62	620	0.0	1092
MS.gene98828.t1	MTR_6g084140	96.601	559	19	0	11	569	45	603	0.0	1090
MS.gene98828.t1	MTR_8g442420	94.118	578	26	2	2	571	28	605	0.0	1087
MS.gene98828.t1	MTR_7g105220	42.975	121	61	2	7	127	50	162	2.01e-23	97.4
MS.gene98828.t1	MTR_8g036015	38.017	121	67	2	12	132	46	158	2.43e-19	85.9
MS.gene98828.t1	MTR_5g015500	37.600	125	70	2	11	135	389	505	7.18e-19	90.5
MS.gene98828.t1	MTR_5g015500	37.600	125	70	2	11	135	349	465	8.53e-19	90.1
MS.gene98828.t1	MTR_2g085075	38.462	117	64	2	11	127	506	614	7.98e-18	87.4
MS.gene98828.t1	MTR_2g023120	44.000	125	60	5	12	134	58	174	4.37e-15	78.6
MS.gene98828.t1	MTR_7g095750	38.393	112	58	4	12	122	68	169	9.08e-15	77.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene98828.t1	AT1G53720	64.583	480	134	8	2	470	28	482	0.0	575
MS.gene98828.t1	AT1G53720	83.849	291	47	0	13	303	47	337	0.0	520
MS.gene98828.t1	AT1G53780	50.222	225	92	3	43	267	3	207	7.32e-54	193
MS.gene98828.t1	AT1G53780	48.058	206	87	3	62	267	1	186	1.50e-43	164
MS.gene98828.t1	AT1G53780	48.058	206	87	3	62	267	1	186	1.50e-43	164
MS.gene98828.t1	AT1G53780	48.058	206	87	3	62	267	1	186	1.51e-43	164
MS.gene98828.t1	AT2G36130	44.444	117	57	3	12	128	55	163	4.05e-24	99.4
MS.gene98828.t1	AT1G01940	38.017	121	67	2	12	132	46	158	5.67e-19	84.7
MS.gene98828.t1	AT3G44600	39.316	117	63	2	11	127	520	628	4.72e-18	88.2
MS.gene98828.t1	AT4G33060	41.732	127	63	5	11	134	57	175	1.05e-17	86.7

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Find 129 sgRNAs with CRISPR-Local

Find 331 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACGAAGCCTGGATGATG+GGG	0.602978	6.1:+73818656	MS.gene98828:CDS
AAACTCAGGAGAACTTGAAG+AGG	0.629240	6.1:+73816205	MS.gene98828:CDS
AAAGACAGAGAAAGGAATAT+GGG	0.483710	6.1:+73818336	MS.gene98828:CDS
AAATGGTCTTCCCTTTCCAT+CGG	0.529485	6.1:-73814972	None:intergenic
AACGGGGTGGAGATAAAGCA+AGG	0.636526	6.1:+73817961	MS.gene98828:CDS
AACTGTGGTCACAATACATG+CGG	0.620072	6.1:+73817688	MS.gene98828:CDS
AAGGACAATAATGCCCAACG+GGG	0.775217	6.1:+73817945	MS.gene98828:CDS
AAGGATTTCACTGCTCAGAC+TGG	0.532033	6.1:+73813867	MS.gene98828:intron
AAGTCCGACTTGAAGATGAT+TGG	0.517976	6.1:+73816162	MS.gene98828:CDS
AATCAAGCACACTTACATCC+TGG	0.562265	6.1:+73815112	MS.gene98828:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGACAGAGAAAGGAATAT+GGG	+	chr6.1:73818336-73818355	MS.gene98828:CDS	30.0%
AAAGAGAGACGATATTACTT+AGG	-	chr6.1:73817183-73817202	None:intergenic	30.0%
AAGAAACCTGAAAAATCAGA+AGG	-	chr6.1:73814289-73814308	None:intergenic	30.0%
AAGCATACAGTAAGTATTCT+AGG	+	chr6.1:73814622-73814641	MS.gene98828:intron	30.0%
AATAAACCTACTAAAACGTC+TGG	-	chr6.1:73817243-73817262	None:intergenic	30.0%
ACCCACAAAATTTATCATGA+AGG	+	chr6.1:73817926-73817945	MS.gene98828:CDS	30.0%
AGTTTATGCTATGCTTTCAT+AGG	+	chr6.1:73816738-73816757	MS.gene98828:CDS	30.0%
ATACATGCGGAAAGATAATA+AGG	+	chr6.1:73817701-73817720	MS.gene98828:CDS	30.0%
ATAGCTTACAAAATCTTCCT+TGG	+	chr6.1:73817284-73817303	MS.gene98828:intron	30.0%
ATGGATGAACAATTAAACTC+AGG	+	chr6.1:73816191-73816210	MS.gene98828:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6.1	gene	73813696	73818749	73813696	ID=MS.gene98828
chr6.1	mRNA	73813696	73818749	73813696	ID=MS.gene98828.t1;Parent=MS.gene98828
chr6.1	exon	73813696	73813734	73813696	ID=MS.gene98828.t1.exon1;Parent=MS.gene98828.t1
chr6.1	CDS	73813696	73813734	73813696	ID=cds.MS.gene98828.t1;Parent=MS.gene98828.t1
chr6.1	exon	73813870	73813931	73813870	ID=MS.gene98828.t1.exon2;Parent=MS.gene98828.t1
chr6.1	CDS	73813870	73813931	73813870	ID=cds.MS.gene98828.t1;Parent=MS.gene98828.t1
chr6.1	exon	73814302	73814419	73814302	ID=MS.gene98828.t1.exon3;Parent=MS.gene98828.t1
chr6.1	CDS	73814302	73814419	73814302	ID=cds.MS.gene98828.t1;Parent=MS.gene98828.t1
chr6.1	exon	73814580	73814630	73814580	ID=MS.gene98828.t1.exon4;Parent=MS.gene98828.t1
chr6.1	CDS	73814580	73814630	73814580	ID=cds.MS.gene98828.t1;Parent=MS.gene98828.t1
chr6.1	exon	73814914	73815005	73814914	ID=MS.gene98828.t1.exon5;Parent=MS.gene98828.t1
chr6.1	CDS	73814914	73815005	73814914	ID=cds.MS.gene98828.t1;Parent=MS.gene98828.t1
chr6.1	exon	73815112	73815211	73815112	ID=MS.gene98828.t1.exon6;Parent=MS.gene98828.t1
chr6.1	CDS	73815112	73815211	73815112	ID=cds.MS.gene98828.t1;Parent=MS.gene98828.t1
chr6.1	exon	73816152	73816274	73816152	ID=MS.gene98828.t1.exon7;Parent=MS.gene98828.t1
chr6.1	CDS	73816152	73816274	73816152	ID=cds.MS.gene98828.t1;Parent=MS.gene98828.t1
chr6.1	exon	73816365	73816442	73816365	ID=MS.gene98828.t1.exon8;Parent=MS.gene98828.t1
chr6.1	CDS	73816365	73816442	73816365	ID=cds.MS.gene98828.t1;Parent=MS.gene98828.t1
chr6.1	exon	73816563	73816609	73816563	ID=MS.gene98828.t1.exon9;Parent=MS.gene98828.t1
chr6.1	CDS	73816563	73816609	73816563	ID=cds.MS.gene98828.t1;Parent=MS.gene98828.t1
chr6.1	exon	73816704	73816759	73816704	ID=MS.gene98828.t1.exon10;Parent=MS.gene98828.t1
chr6.1	CDS	73816704	73816759	73816704	ID=cds.MS.gene98828.t1;Parent=MS.gene98828.t1
chr6.1	exon	73817108	73817148	73817108	ID=MS.gene98828.t1.exon11;Parent=MS.gene98828.t1
chr6.1	CDS	73817108	73817148	73817108	ID=cds.MS.gene98828.t1;Parent=MS.gene98828.t1
chr6.1	exon	73817627	73817723	73817627	ID=MS.gene98828.t1.exon12;Parent=MS.gene98828.t1
chr6.1	CDS	73817627	73817723	73817627	ID=cds.MS.gene98828.t1;Parent=MS.gene98828.t1
chr6.1	exon	73817853	73817982	73817853	ID=MS.gene98828.t1.exon13;Parent=MS.gene98828.t1
chr6.1	CDS	73817853	73817982	73817853	ID=cds.MS.gene98828.t1;Parent=MS.gene98828.t1
chr6.1	exon	73818068	73818749	73818068	ID=MS.gene98828.t1.exon14;Parent=MS.gene98828.t1
chr6.1	CDS	73818068	73818749	73818068	ID=cds.MS.gene98828.t1;Parent=MS.gene98828.t1

Gene Sequence

>MS.gene98828

ATGTTCCTTAACCTGCAAAAACTTCTTGAAGCTTTGCAAGTCAGTTTTCTTCATCATTCTTCTCTCTTTTTCTTTCTTCTTTCACATCATTATGTTAACATTGTTGTTGTTGTTGTTTTTTTTGTTATTAGGATTAAGTATTATAATGGGTGTTTGTTTCATACTGTTCAAAAGGATTTCACTGCTCAGACTGGTGATCCTACTGGAACTGGCACTGCTGGTGATTCTATCTACAAGTAACATTCCCTAATTCATTAATTTCTTTTACTCTTTTTATTTTATTTCATAATTGTGTTTTCTAGGGTTGTTAATTGATTAATATTTTAATATGAGTTTGTGAAGTTGAGTTAAGTTTCTGATTTTTATTTTCAGTTACTGTTAAAATGTATTTTAGTTTGTTATTACCTATCAAGTATGAACACTTACACGTCAACACCAATAAAATTTTGAGAAAACGACATGATTAAATGTAATCACATCACATGTGCTGTGTCGGTGTCAAACAGTGAGACGCGTCTTCGATATGAGAGCTTGAGAAGTAATCTTGATTGGAAAATTTCTGACTTTGATGTTGTCATTTTGTTCAACGGCCTTCTGATTTTTCAGGTTTCTTTATGGGGATCAAGCTCGATTTTTCAATGATGAGATTCATATTGATCTAAAGCATTCTAAGACTGGAACTGTTGCCATGGCTAGTGCAGGAGAGAATTTGAATGCTTCACAGGTATGACATTGATTTTGGTGGCAGCTTGATGATTGCTTTACTGTTACTTGATCAACATGCGTTCTTCCCTGACAACCTTGTATAAAGCTTGTATAAAGCATGAGTAGTTAATGCATCGAATAAACTATTTTTTTCACTTACTATTTTTTTCTTTTTTCAGTTCTATATAACTCTGCGTGATGACCTTGATTACCTTGACGGAAAGCATACAGTAAGTATTCTAGGCATCCTTTCCTTGCTTTGATTGTTTCGCAGGGTACATGGGCATCATTGCATGGAATACACTGTGCATTTACATTTTATATAATAAAAGCATATAATATAATAAAAGCATATAATATAATAAAAGCATATAATATAATAAAAGCATATAATAGAAGCTTGACTAATTGAAGCAGCTATCATAACAAAAGCAACTTAGCTATAACTTAACTCTATCAACTTTTATACTGTCGAAGTTATTTGTTTGGTTTCTAAGGTATGCCATCCTGCAGGTTTTTGGTGAGGTAGCTGAAGGATTTGAGACTTTGACTAGAATTAATGAGGCTTATGCCGATGGAAAGGGAAGACCATTTAAAAATATCCGGTTTGTACTCCTTTTTTACTACTAATAAATGTGGATTGATAGAGGTATTTTAGATTTTGTCTTTTTGAGAAGAATGTAATGTATCCATCTTGCATTACTTGAACAGAATCAAGCACACTTACATCCTGGAAGATCCTTTTGATGATCCTCCTCAGCTACCTGAGTTCATTCCTGAAGCTTCACCAGAAGGAAAACCTAAAGACGAGGTAAGGAAAAGTTGATTGCAGAATTGAATTTTATAGCTTGTAACCAAGCAACGTTTTGAATGGATTATATTTATCGGCGATCCTTTCTATTACGAGATCATTAATTATGAGAATTGAGAAACTGAGAATGACTCCAATTGAAAGAGAAAAAATCACTGACCTCATTTTTCTTAACTTGATTACACGCGCAAATCCACCTGTTATTTTTTCAGACACATTTTAAAGCAATAAGCTTGAAGTTACATTAGTTAAGTTTGATAAATGTGGGAGCAATTCCTTTTATGGTATCCAAACTAGGGAGAAAATCCACCTGTTACTTTAGAGTCTGTTTGGGAGGGGGATATTGGAGGAGAGGGGAGGTAAAGGCTTGTTTTTCTTTTCTAAATTACACAAGCTATAAAATGTTTCTAAAATTGAATGAAGTGTGATTGAATTGTTTTATGACCATATATCAAGGTATTCTTTCAAAAAAAAAATTAAAAATCTCAAATATATATTAAAATATAGACCTTGCCTTCCAAAATCCCTCTCCCAAAGAGACCCTTGCATTTCCTTCGTGGTTACTAAGAGGGTTTTCCTGATAGATATGCAGAAGGATAGAATCATATGAGAGCTATTCAGCTTAATTTACACCGATTAATTTGTTTAATTTCAGTACTTTATTTTTTCACCTAGTTCAGGAGGGTAACACACCCTCCCCTATTTTTTGTGAAATGTGATACTACAATTTACGAATTGAATTATATATGTTGTCACTGTATGACTAATTTGGAGATGAATGACAACATCATCTATATATGGATTGAATGAATACGTTGGGTTTACTTTTTATGTATTTATAATCATATATCAAACATTATAGTGAATATTTGAATTTTACAGTCTTAAGTAAAAACACCTGTTTGAACTTCAAAGTGACGACTAAATGCAATTTTACTAGGTTGATGATGAAGTCCGACTTGAAGATGATTGGGTGCCCATGGATGAACAATTAAACTCAGGAGAACTTGAAGAGGTTATTAGATCAAAGGAAGCACATTCTAGGGCAGTTGTGCTTGAGAGTGTAAGTATATGTTGCGCAAAATCTTAGTACTTTGTGATCTCTTATCTGATTATGATTCCTTTGTATAACTGCCTTTCTTCCTTATTTTAGATTGGGGATATTCCAGATGCTGAGGTTAAACCTCCGGATAATGTACTTTTTGTCTGTAAATTGAATCCGGTTACTGAGGTGGGTAATCTTTTATGCTCTGTTATGGATCTGTATAATTTCCTTCTTTACCCATTCATATTTACCGAGGTAGCATTCAATGTTTTCTTAACAATTAATGATTTTCTCTTTAAAATACAGGATGAGGACTTGCACACAATATTTTCACGCTTTGGAACTGTATCATCGTGAGTAATACTGAAGATTTGACTTGTTAACACATTTAATAATATCATATTGTATATTGTATATACTGTTCTCACCTAAAATATTTGATGATAGGGCTGAAATCATTCGTGATCACAAGACTGGTGACAGTTTATGCTATGCTTTCATAGGTCAGTATGTATGTCCAGAATCTGTGTTAAAATTATGCAATTTCAAGTTCATCCAGGAATTTATAATTTTCAATTGTTTAAATTATTCCGATTTTTTTGTCATTAAATGGCCTTTTAGACTTATTAGTGAGAATCTGCATCTTTGTAGTTTTAAGAGGAATTAAAAGGTTATTGTTTGAAGACTTATAAATATCTTATATTATCTTGATATTATGTTAAGACTCGAGAGTATCTTGATATTATGTTAAGACCTGAGAGTATCTCAAACCTACCCTGCAATTGTGAAAGGGGTAATTACTCTTGTTATTAATGCAATCAATGTTATCTAATGCTTATGTGTCATGACAGAGTTCGAAGACAAACTGGCATGTGAGCAGGCATATTTTAAGGTATGATGGAGATCTTGACCTGTTTTTTTTTCCTAAGTAATATCGTCTCTCTTTTTCTGGACAGTAAATGACACTGTTAGCTTCATGCACACCAGACGTTTTAGTAGGTTTATTAGTTCCTTGATAAGCTTATATATAGCTTACAAAATCTTCCTTGGTTAGCATTATCCATCTTATGTAATATTGCATTTATCTCCTAAACAACAATAACCAAGACTTATCCCACTAAGTGGGTTTGGCGTATTTATCTTCTAAAGATAATGATAATTTCGCTATTGTTTAATCTGCTTGCTTAGCTGTTTTATTTGCTTTGTTATCCTGTTTCAATTTGGATTGACCTTTTGGATGTATTGGATTGCAGACTTGTTCTTTTCTTTTGTAATTTTTTAGTTTAAACTTACAATTTCAACTACATATACATAAATTTTTTTAGATGAATAAAAAACTTATTTCTCCTTCATGGCCTCCTGATCTGCAGATGGATAATGCTTTGATTGATGATCGAAGGATACATGTGGATTTTAGTCAAAGTGTTGCCAAACTGTGGTCACAATACATGCGGAAAGATAATAAGGGTAATGATATGACTGTAAGCATTTGTTTTATACTTTCATTTTATGGCATCATACAAAATGCTAGCCTATGTTTGGTTGTCAACGATTGAAACTAACCCTCCATGTTGATACAATAATTTATGACTGCAGGTGGTGGTTGCTTCAAATGTGGTTCCACTGATCATATTGCTAGGGATTGCACTGGAGATGCTACAATGAAACAACCCACAAAATTTATCATGAAGGACAATAATGCCCAACGGGGTGGAGATAAAGCAAGGTCTGTACTTCTGATTGCATATGTCTGTCTTTTACTGCCTGTGATTATGTCCGTTCTAACGAATGACCCCAATTTCATGGTGTAGATACGAAATGGTTTTTGATGGAGATAACACGGAAAGTCCAAAGAGAGAAACGAAACACCAGCGATATGAAAGGGATGACCGGTATGATAAAAAAGGTAGGAAGGAAAATTTTAAAGATGATAGTCATAGAGGTCGTAGGGATCAGGAGATGGCAGGCTCGAATAACAGAGATAGGTATCGCGATAGAAGCAGAGGGCTTGAAGGAAACGGAGATGATAAAGCGGGACTGGAAAGAGGTGCAAGAGATCCGGATTTTCATGCCGACAAGAAAGACAGAGAAAGGAATATGGGAAGAAGACATAGAGACGATGACTACCGACGGAAAGATGAGCTAGACTCGAGAAAAAGAGACTTCGATGATAAATACACAGAAAGACGGGCTAGTCGAGATGATAGGAGAAAAACAGATGACAGCCATTTGGATAGGAGGGATGACCGAGATTATAGGAAGAGAACTGAAGACAGTGTAAGGCAAGATGTGAAGGTTGATTCTGGAAGAAGAAAACGAAGCCCAGATGGCGATGATTACAAACGTAGAAGGAATGATGAGGATTACAGAGAAGATGTGAAGATTGATTCCGGACGAAGAAAACGAAGCCTGGATGATGGGGATTACAAACGTGGAAGGGACCATGAGGATTACAGACATAGGAGGGAAGGTCGTGAACATAGAAGGACATGA

Protein sequence

>MS.gene98828.t1

MFLNLQKLLEALQDFTAQTGDPTGTGTAGDSIYKFLYGDQARFFNDEIHIDLKHSKTGTVAMASAGENLNASQFYITLRDDLDYLDGKHTVFGEVAEGFETLTRINEAYADGKGRPFKNIRIKHTYILEDPFDDPPQLPEFIPEASPEGKPKDEVDDEVRLEDDWVPMDEQLNSGELEEVIRSKEAHSRAVVLESIGDIPDAEVKPPDNVLFVCKLNPVTEDEDLHTIFSRFGTVSSAEIIRDHKTGDSLCYAFIEFEDKLACEQAYFKMDNALIDDRRIHVDFSQSVAKLWSQYMRKDNKGGGCFKCGSTDHIARDCTGDATMKQPTKFIMKDNNAQRGGDKARYEMVFDGDNTESPKRETKHQRYERDDRYDKKGRKENFKDDSHRGRRDQEMAGSNNRDRYRDRSRGLEGNGDDKAGLERGARDPDFHADKKDRERNMGRRHRDDDYRRKDELDSRKRDFDDKYTERRASRDDRRKTDDSHLDRRDDRDYRKRTEDSVRQDVKVDSGRRKRSPDGDDYKRRRNDEDYREDVKIDSGRRKRSLDDGDYKRGRDHEDYRHRREGREHRRT