Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069310.t1 | XP_013458956.1 | 99.2 | 120 | 1 | 0 | 1 | 120 | 1 | 120 | 6.20E-62 | 246.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069310.t1 | Q9FNP8 | 82.5 | 120 | 21 | 0 | 1 | 120 | 1 | 120 | 2.0e-56 | 219.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069310.t1 | A0A072UT55 | 99.2 | 120 | 1 | 0 | 1 | 120 | 1 | 120 | 4.5e-62 | 246.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049129 | MS.gene069310 | -0.824327 | 8.57E-54 | -1.69E-46 |
| MS.gene049140 | MS.gene069310 | 0.82387 | 1.10E-53 | -1.69E-46 |
| MS.gene049255 | MS.gene069310 | 0.847302 | 1.26E-59 | -1.69E-46 |
| MS.gene049341 | MS.gene069310 | 0.815684 | 8.15E-52 | -1.69E-46 |
| MS.gene049411 | MS.gene069310 | 0.828036 | 1.12E-54 | -1.69E-46 |
| MS.gene049580 | MS.gene069310 | 0.834924 | 2.26E-56 | -1.69E-46 |
| MS.gene050277 | MS.gene069310 | 0.907998 | 2.76E-81 | -1.69E-46 |
| MS.gene050290 | MS.gene069310 | 0.840078 | 1.08E-57 | -1.69E-46 |
| MS.gene050320 | MS.gene069310 | 0.856307 | 3.52E-62 | -1.69E-46 |
| MS.gene050437 | MS.gene069310 | 0.8172 | 3.73E-52 | -1.69E-46 |
| MS.gene050689 | MS.gene069310 | 0.812413 | 4.29E-51 | -1.69E-46 |
| MS.gene050752 | MS.gene069310 | 0.872571 | 2.87E-67 | -1.69E-46 |
| MS.gene050838 | MS.gene069310 | 0.888289 | 6.74E-73 | -1.69E-46 |
| MS.gene050916 | MS.gene069310 | 0.841199 | 5.49E-58 | -1.69E-46 |
| MS.gene050955 | MS.gene069310 | 0.856108 | 4.02E-62 | -1.69E-46 |
| MS.gene051003 | MS.gene069310 | 0.825776 | 3.90E-54 | -1.69E-46 |
| MS.gene051063 | MS.gene069310 | 0.850934 | 1.23E-60 | -1.69E-46 |
| MS.gene051233 | MS.gene069310 | 0.811424 | 7.05E-51 | -1.69E-46 |
| MS.gene051234 | MS.gene069310 | 0.840845 | 6.80E-58 | -1.69E-46 |
| MS.gene051241 | MS.gene069310 | 0.804483 | 2.11E-49 | -1.69E-46 |
| MS.gene051245 | MS.gene069310 | 0.806287 | 8.85E-50 | -1.69E-46 |
| MS.gene051328 | MS.gene069310 | 0.827043 | 1.95E-54 | -1.69E-46 |
| MS.gene051330 | MS.gene069310 | 0.854497 | 1.18E-61 | -1.69E-46 |
| MS.gene05134 | MS.gene069310 | 0.850597 | 1.53E-60 | -1.69E-46 |
| MS.gene051451 | MS.gene069310 | 0.836507 | 8.98E-57 | -1.69E-46 |
| MS.gene051633 | MS.gene069310 | 0.815653 | 8.28E-52 | -1.69E-46 |
| MS.gene051687 | MS.gene069310 | 0.808434 | 3.10E-50 | -1.69E-46 |
| MS.gene051746 | MS.gene069310 | 0.916594 | 1.48E-85 | -1.69E-46 |
| MS.gene051748 | MS.gene069310 | 0.903571 | 3.02E-79 | -1.69E-46 |
| MS.gene051756 | MS.gene069310 | 0.831718 | 1.42E-55 | -1.69E-46 |
| MS.gene051850 | MS.gene069310 | 0.889411 | 2.48E-73 | -1.69E-46 |
| MS.gene05188 | MS.gene069310 | 0.807002 | 6.25E-50 | -1.69E-46 |
| MS.gene051903 | MS.gene069310 | 0.938608 | 5.08E-99 | -1.69E-46 |
| MS.gene052133 | MS.gene069310 | 0.819219 | 1.30E-52 | -1.69E-46 |
| MS.gene052286 | MS.gene069310 | 0.813911 | 2.01E-51 | -1.69E-46 |
| MS.gene052335 | MS.gene069310 | 0.801556 | 8.52E-49 | -1.69E-46 |
| MS.gene052479 | MS.gene069310 | 0.839376 | 1.64E-57 | -1.69E-46 |
| MS.gene052818 | MS.gene069310 | -0.808225 | 3.44E-50 | -1.69E-46 |
| MS.gene052947 | MS.gene069310 | 0.930574 | 1.34E-93 | -1.69E-46 |
| MS.gene053058 | MS.gene069310 | 0.820487 | 6.68E-53 | -1.69E-46 |
| MS.gene053109 | MS.gene069310 | 0.870238 | 1.70E-66 | -1.69E-46 |
| MS.gene053952 | MS.gene069310 | 0.887789 | 1.05E-72 | -1.69E-46 |
| MS.gene054250 | MS.gene069310 | 0.809046 | 2.30E-50 | -1.69E-46 |
| MS.gene054403 | MS.gene069310 | 0.873744 | 1.16E-67 | -1.69E-46 |
| MS.gene05469 | MS.gene069310 | 0.807411 | 5.12E-50 | -1.69E-46 |
| MS.gene054937 | MS.gene069310 | 0.899765 | 1.43E-77 | -1.69E-46 |
| MS.gene055162 | MS.gene069310 | 0.870024 | 1.99E-66 | -1.69E-46 |
| MS.gene055174 | MS.gene069310 | 0.809252 | 2.07E-50 | -1.69E-46 |
| MS.gene055424 | MS.gene069310 | 0.855133 | 7.74E-62 | -1.69E-46 |
| MS.gene055555 | MS.gene069310 | 0.852705 | 3.87E-61 | -1.69E-46 |
| MS.gene055808 | MS.gene069310 | 0.80788 | 4.07E-50 | -1.69E-46 |
| MS.gene056043 | MS.gene069310 | -0.807212 | 5.64E-50 | -1.69E-46 |
| MS.gene056075 | MS.gene069310 | 0.915136 | 8.42E-85 | -1.69E-46 |
| MS.gene056091 | MS.gene069310 | 0.816542 | 5.24E-52 | -1.69E-46 |
| MS.gene056580 | MS.gene069310 | 0.808678 | 2.75E-50 | -1.69E-46 |
| MS.gene056601 | MS.gene069310 | 0.863318 | 2.71E-64 | -1.69E-46 |
| MS.gene056631 | MS.gene069310 | 0.894915 | 1.57E-75 | -1.69E-46 |
| MS.gene056986 | MS.gene069310 | 0.809891 | 1.51E-50 | -1.69E-46 |
| MS.gene057057 | MS.gene069310 | 0.854912 | 8.97E-62 | -1.69E-46 |
| MS.gene057094 | MS.gene069310 | 0.907032 | 7.85E-81 | -1.69E-46 |
| MS.gene057206 | MS.gene069310 | 0.818583 | 1.82E-52 | -1.69E-46 |
| MS.gene057234 | MS.gene069310 | 0.890325 | 1.09E-73 | -1.69E-46 |
| MS.gene057694 | MS.gene069310 | 0.816367 | 5.74E-52 | -1.69E-46 |
| MS.gene057705 | MS.gene069310 | 0.906905 | 8.99E-81 | -1.69E-46 |
| MS.gene05781 | MS.gene069310 | 0.828424 | 9.06E-55 | -1.69E-46 |
| MS.gene057999 | MS.gene069310 | 0.825857 | 3.73E-54 | -1.69E-46 |
| MS.gene058054 | MS.gene069310 | 0.813053 | 3.11E-51 | -1.69E-46 |
| MS.gene058055 | MS.gene069310 | 0.856491 | 3.10E-62 | -1.69E-46 |
| MS.gene058074 | MS.gene069310 | 0.846278 | 2.40E-59 | -1.69E-46 |
| MS.gene058238 | MS.gene069310 | 0.857454 | 1.61E-62 | -1.69E-46 |
| MS.gene058245 | MS.gene069310 | 0.804341 | 2.26E-49 | -1.69E-46 |
| MS.gene058354 | MS.gene069310 | 0.808823 | 2.56E-50 | -1.69E-46 |
| MS.gene058364 | MS.gene069310 | 0.812615 | 3.88E-51 | -1.69E-46 |
| MS.gene058906 | MS.gene069310 | 0.851586 | 8.06E-61 | -1.69E-46 |
| MS.gene059146 | MS.gene069310 | 0.81277 | 3.59E-51 | -1.69E-46 |
| MS.gene059227 | MS.gene069310 | 0.834399 | 3.07E-56 | -1.69E-46 |
| MS.gene059726 | MS.gene069310 | 0.851502 | 8.51E-61 | -1.69E-46 |
| MS.gene059787 | MS.gene069310 | 0.802152 | 6.42E-49 | -1.69E-46 |
| MS.gene059898 | MS.gene069310 | 0.861913 | 7.34E-64 | -1.69E-46 |
| MS.gene06001 | MS.gene069310 | 0.925218 | 2.47E-90 | -1.69E-46 |
| MS.gene06011 | MS.gene069310 | 0.842279 | 2.85E-58 | -1.69E-46 |
| MS.gene060429 | MS.gene069310 | 0.828703 | 7.76E-55 | -1.69E-46 |
| MS.gene060463 | MS.gene069310 | 0.801324 | 9.50E-49 | -1.69E-46 |
| MS.gene060465 | MS.gene069310 | 0.803816 | 2.91E-49 | -1.69E-46 |
| MS.gene060763 | MS.gene069310 | 0.851522 | 8.40E-61 | -1.69E-46 |
| MS.gene060830 | MS.gene069310 | 0.801845 | 7.43E-49 | -1.69E-46 |
| MS.gene060856 | MS.gene069310 | 0.808843 | 2.54E-50 | -1.69E-46 |
| MS.gene060917 | MS.gene069310 | 0.857221 | 1.89E-62 | -1.69E-46 |
| MS.gene061145 | MS.gene069310 | 0.852091 | 5.80E-61 | -1.69E-46 |
| MS.gene06118 | MS.gene069310 | 0.856019 | 4.27E-62 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069310.t1 | MTR_3g013635 | 99.167 | 120 | 1 | 0 | 1 | 120 | 1 | 120 | 1.65e-88 | 253 |
| MS.gene069310.t1 | MTR_3g013635 | 99.167 | 120 | 1 | 0 | 1 | 120 | 1 | 120 | 1.65e-88 | 253 |
| MS.gene069310.t1 | MTR_8g040740 | 88.333 | 120 | 14 | 0 | 1 | 120 | 1 | 120 | 4.11e-81 | 234 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069310.t1 | AT5G61170 | 82.500 | 120 | 21 | 0 | 1 | 120 | 1 | 120 | 2.79e-77 | 224 |
| MS.gene069310.t1 | AT3G02080 | 81.667 | 120 | 22 | 0 | 1 | 120 | 1 | 120 | 1.26e-76 | 223 |
| MS.gene069310.t1 | AT5G15520 | 82.500 | 120 | 21 | 0 | 1 | 120 | 1 | 120 | 2.56e-76 | 222 |
Find 40 sgRNAs with CRISPR-Local
Find 72 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTGAAGACTGCAAGGTTTA+AGG | 0.181111 | 3.3:+8524198 | MS.gene069310:CDS |
| GGTGCATTCCAGAGGATTTA+TGG | 0.279212 | 3.3:+8524436 | MS.gene069310:CDS |
| TTCACAATATCTGTCCATTC+TGG | 0.341460 | 3.3:-8524181 | None:intergenic |
| CCTTGGTGTCCATCTCAATA+AGG | 0.385015 | 3.3:-8524552 | None:intergenic |
| GACTGCAAGGTTTAAGGAGT+TGG | 0.416477 | 3.3:+8524204 | MS.gene069310:CDS |
| ACCCCTCAAGTAGATCTTCC+TGG | 0.431786 | 3.3:-8524401 | None:intergenic |
| GACTTCCACCATAAATCCTC+TGG | 0.453242 | 3.3:-8524444 | None:intergenic |
| ATCTACTTGAGGGGTGGACT+CGG | 0.454423 | 3.3:+8524409 | MS.gene069310:CDS |
| TCTGCTCATCTCAAAAGATC+TGG | 0.481965 | 3.3:+8523262 | MS.gene069310:CDS |
| GTGCCGCAGCTTCCATGGCC+AGG | 0.485644 | 3.3:+8524383 | MS.gene069310:intron |
| GCTCTGACGTAGTACCAGTC+AGG | 0.489319 | 3.3:-8524238 | None:intergenic |
| TAGTACCAGTCAGGGTCATA+AGG | 0.498306 | 3.3:-8524229 | None:intergenic |
| TATGGTGGAAGTCAGAGAAA+TGG | 0.514768 | 3.3:+8524454 | MS.gene069310:CDS |
| CAAGTAGATCTTCCTGGCCA+TGG | 0.517027 | 3.3:-8524395 | None:intergenic |
| GGCCAGGAAGATCTACTTGA+GGG | 0.518439 | 3.3:+8524399 | MS.gene069310:CDS |
| TTGAGGGGTGGACTCGGTGT+TGG | 0.522669 | 3.3:+8524415 | MS.gene069310:CDS |
| AACAGTCCTTGCGGTAGCCA+TGG | 0.523894 | 3.3:-8523203 | None:intergenic |
| GATAATGAGTTCTTACCCCT+TGG | 0.524570 | 3.3:-8524569 | None:intergenic |
| TGGCTCCTTATGACCCTGAC+TGG | 0.535373 | 3.3:+8524224 | MS.gene069310:CDS |
| CCACTGCTCTTGCAGAAATG+AGG | 0.542089 | 3.3:-8524487 | None:intergenic |
| GACTGGTACTACGTCAGAGC+TGG | 0.543992 | 3.3:+8524241 | MS.gene069310:CDS |
| AACAGATGGAGCTTCCAGAA+TGG | 0.551656 | 3.3:+8524167 | MS.gene069310:intron |
| TTGAAGAATGTGGCGAGCAA+TGG | 0.555153 | 3.3:-8524512 | None:intergenic |
| GAACATGAACCTTATTGAGA+TGG | 0.561257 | 3.3:+8524543 | MS.gene069310:CDS |
| CCTCATTTCTGCAAGAGCAG+TGG | 0.589477 | 3.3:+8524487 | MS.gene069310:CDS |
| TCGGTGTTGGTGCATTCCAG+AGG | 0.603387 | 3.3:+8524428 | MS.gene069310:CDS |
| CAGATATTGTGAAGACTGCA+AGG | 0.617924 | 3.3:+8524191 | MS.gene069310:CDS |
| CTGCTCTTGCAGAAATGAGG+TGG | 0.621206 | 3.3:-8524484 | None:intergenic |
| AGGAAGATCTACTTGAGGGG+TGG | 0.621735 | 3.3:+8524403 | MS.gene069310:CDS |
| CTCTGACGTAGTACCAGTCA+GGG | 0.627550 | 3.3:-8524237 | None:intergenic |
| TCATCTCAAAAGATCTGGCA+AGG | 0.635281 | 3.3:+8523267 | MS.gene069310:CDS |
| GCACAACCATGGCTACCGCA+AGG | 0.635383 | 3.3:+8523197 | None:intergenic |
| CTTATTGAGATGGACACCAA+GGG | 0.649426 | 3.3:+8524553 | MS.gene069310:CDS |
| TGGCCAGGAAGATCTACTTG+AGG | 0.650322 | 3.3:+8524398 | MS.gene069310:CDS |
| CCTTATTGAGATGGACACCA+AGG | 0.671459 | 3.3:+8524552 | MS.gene069310:CDS |
| GCATTCCAGAGGATTTATGG+TGG | 0.673361 | 3.3:+8524439 | MS.gene069310:CDS |
| AACATCTTGAACAGTCCTTG+CGG | 0.675305 | 3.3:-8523212 | None:intergenic |
| TCTGCAACTGTTGAAGAATG+TGG | 0.679137 | 3.3:-8524522 | None:intergenic |
| GCCAGGAAGATCTACTTGAG+GGG | 0.686642 | 3.3:+8524400 | MS.gene069310:CDS |
| TTATTGAGATGGACACCAAG+GGG | 0.704884 | 3.3:+8524554 | MS.gene069310:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTGTTAATTTAAACAA+GGG | - | chr3.3:8524303-8524322 | None:intergenic | 10.0% |
| !!! | TTTTTTTGTTAATTTAAACA+AGG | - | chr3.3:8524304-8524323 | None:intergenic | 10.0% |
| !! | TAATCTATGTAATTAGAATA+AGG | - | chr3.3:8523935-8523954 | None:intergenic | 15.0% |
| !!! | AAAACCAAAATGAAATTTTT+CGG | - | chr3.3:8523305-8523324 | None:intergenic | 15.0% |
| !!! | ATCAAAATCATTTTTTTGTT+AGG | - | chr3.3:8523610-8523629 | None:intergenic | 15.0% |
| !!! | TTGTTTTTGTTAATCAAATT+AGG | + | chr3.3:8523811-8523830 | MS.gene069310:intron | 15.0% |
| !!! | TTTGATTTTTTTTTTTGAAG+AGG | + | chr3.3:8523354-8523373 | MS.gene069310:intron | 15.0% |
| !! | AACAAAAAAATAACTTTCGA+GGG | + | chr3.3:8524314-8524333 | MS.gene069310:intron | 20.0% |
| !! | ATTTGAACTATACAATTACA+CGG | - | chr3.3:8524094-8524113 | None:intergenic | 20.0% |
| !! | TAACAAAAAAATAACTTTCG+AGG | + | chr3.3:8524313-8524332 | MS.gene069310:intron | 20.0% |
| !! | TCTAATTACATAGATTACTT+GGG | + | chr3.3:8523938-8523957 | MS.gene069310:intron | 20.0% |
| !! | TTATAATGATACGAATGAAA+TGG | + | chr3.3:8524068-8524087 | MS.gene069310:intron | 20.0% |
| !! | TTCTAATTACATAGATTACT+TGG | + | chr3.3:8523937-8523956 | MS.gene069310:intron | 20.0% |
| !! | TTGTATAGTTCAAATTTAGT+TGG | + | chr3.3:8524099-8524118 | MS.gene069310:intron | 20.0% |
| !!! | ACAAATTTTGAAAGTTCAAA+AGG | - | chr3.3:8523904-8523923 | None:intergenic | 20.0% |
| !!! | ATTTGTTTTGATTTGCTTAA+CGG | + | chr3.3:8523378-8523397 | MS.gene069310:intron | 20.0% |
| !!! | CAAATTTTGAAAGTTCAAAA+GGG | - | chr3.3:8523903-8523922 | None:intergenic | 20.0% |
| !!! | TGATTTTGATTTGATTTGAT+TGG | + | chr3.3:8523620-8523639 | MS.gene069310:intron | 20.0% |
| !!! | TGTTTTGAATGTTATGTTTT+TGG | + | chr3.3:8523509-8523528 | MS.gene069310:intron | 20.0% |
| ! | CATCTGTTCATAACAAAATA+AGG | - | chr3.3:8524155-8524174 | None:intergenic | 25.0% |
| !! | TTCACCGAAAAATTTCATTT+TGG | + | chr3.3:8523298-8523317 | MS.gene069310:intron | 25.0% |
| !!! | CTTATTTTGTTATGAACAGA+TGG | + | chr3.3:8524153-8524172 | MS.gene069310:intron | 25.0% |
| !!! | GAACTTTCAAAATTTGTTGT+TGG | + | chr3.3:8523907-8523926 | MS.gene069310:intron | 25.0% |
| !!! | TGAATGTTATGTTTTTGGTT+GGG | + | chr3.3:8523514-8523533 | MS.gene069310:intron | 25.0% |
| !!! | TTGAATGTTATGTTTTTGGT+TGG | + | chr3.3:8523513-8523532 | MS.gene069310:intron | 25.0% |
| !!! | TTTGTTTTGATTTGCTTAAC+GGG | + | chr3.3:8523379-8523398 | MS.gene069310:intron | 25.0% |
| ! | ACATTGCAATTTTCAACAAC+AGG | - | chr3.3:8524356-8524375 | None:intergenic | 30.0% |
| GAACATGAACCTTATTGAGA+TGG | + | chr3.3:8524543-8524562 | MS.gene069310:CDS | 35.0% | |
| GTTAATTTAAACAAGGGACC+AGG | - | chr3.3:8524297-8524316 | None:intergenic | 35.0% | |
| TTACATAGATTACTTGGGCA+TGG | + | chr3.3:8523943-8523962 | MS.gene069310:intron | 35.0% | |
| TTCACAATATCTGTCCATTC+TGG | - | chr3.3:8524184-8524203 | None:intergenic | 35.0% | |
| !! | GTTTGATTTTGTGCATTTCC+TGG | + | chr3.3:8524276-8524295 | MS.gene069310:intron | 35.0% |
| !!! | GTTATGTTTTTGGTTGGGTT+TGG | + | chr3.3:8523519-8523538 | MS.gene069310:intron | 35.0% |
| AACATCTTGAACAGTCCTTG+CGG | - | chr3.3:8523215-8523234 | None:intergenic | 40.0% | |
| CAGATATTGTGAAGACTGCA+AGG | + | chr3.3:8524191-8524210 | MS.gene069310:CDS | 40.0% | |
| CTTATTGAGATGGACACCAA+GGG | + | chr3.3:8524553-8524572 | MS.gene069310:CDS | 40.0% | |
| GTATTCAAGCTCTACTTCAC+TGG | + | chr3.3:8524034-8524053 | MS.gene069310:intron | 40.0% | |
| TCATCTCAAAAGATCTGGCA+AGG | + | chr3.3:8523267-8523286 | MS.gene069310:CDS | 40.0% | |
| TCTGCAACTGTTGAAGAATG+TGG | - | chr3.3:8524525-8524544 | None:intergenic | 40.0% | |
| TCTGCTCATCTCAAAAGATC+TGG | + | chr3.3:8523262-8523281 | MS.gene069310:CDS | 40.0% | |
| TGTGAAGACTGCAAGGTTTA+AGG | + | chr3.3:8524198-8524217 | MS.gene069310:CDS | 40.0% | |
| TTATTGAGATGGACACCAAG+GGG | + | chr3.3:8524554-8524573 | MS.gene069310:CDS | 40.0% | |
| ! | TATGGTGGAAGTCAGAGAAA+TGG | + | chr3.3:8524454-8524473 | MS.gene069310:CDS | 40.0% |
| AACAGATGGAGCTTCCAGAA+TGG | + | chr3.3:8524167-8524186 | MS.gene069310:intron | 45.0% | |
| CATGGTTTCATCTCACGTGT+TGG | + | chr3.3:8523961-8523980 | MS.gene069310:intron | 45.0% | |
| CCTTATTGAGATGGACACCA+AGG | + | chr3.3:8524552-8524571 | MS.gene069310:CDS | 45.0% | |
| GACTGCAAGGTTTAAGGAGT+TGG | + | chr3.3:8524204-8524223 | MS.gene069310:CDS | 45.0% | |
| GACTTCCACCATAAATCCTC+TGG | - | chr3.3:8524447-8524466 | None:intergenic | 45.0% | |
| GCATTCCAGAGGATTTATGG+TGG | + | chr3.3:8524439-8524458 | MS.gene069310:CDS | 45.0% | |
| GGTGCATTCCAGAGGATTTA+TGG | + | chr3.3:8524436-8524455 | MS.gene069310:CDS | 45.0% | |
| TAGTACCAGTCAGGGTCATA+AGG | - | chr3.3:8524232-8524251 | None:intergenic | 45.0% | |
| TTGAAGAATGTGGCGAGCAA+TGG | - | chr3.3:8524515-8524534 | None:intergenic | 45.0% | |
| !! | CCTTGGTGTCCATCTCAATA+AGG | - | chr3.3:8524555-8524574 | None:intergenic | 45.0% |
| ACCCCTCAAGTAGATCTTCC+TGG | - | chr3.3:8524404-8524423 | None:intergenic | 50.0% | |
| AGGAAGATCTACTTGAGGGG+TGG | + | chr3.3:8524403-8524422 | MS.gene069310:CDS | 50.0% | |
| CAAGTAGATCTTCCTGGCCA+TGG | - | chr3.3:8524398-8524417 | None:intergenic | 50.0% | |
| CCACTGCTCTTGCAGAAATG+AGG | - | chr3.3:8524490-8524509 | None:intergenic | 50.0% | |
| CCTCATTTCTGCAAGAGCAG+TGG | + | chr3.3:8524487-8524506 | MS.gene069310:CDS | 50.0% | |
| CTCTGACGTAGTACCAGTCA+GGG | - | chr3.3:8524240-8524259 | None:intergenic | 50.0% | |
| CTGCTCTTGCAGAAATGAGG+TGG | - | chr3.3:8524487-8524506 | None:intergenic | 50.0% | |
| GCCAGGAAGATCTACTTGAG+GGG | + | chr3.3:8524400-8524419 | MS.gene069310:CDS | 50.0% | |
| GGCCAGGAAGATCTACTTGA+GGG | + | chr3.3:8524399-8524418 | MS.gene069310:CDS | 50.0% | |
| TGGCCAGGAAGATCTACTTG+AGG | + | chr3.3:8524398-8524417 | MS.gene069310:CDS | 50.0% | |
| ! | ATCTACTTGAGGGGTGGACT+CGG | + | chr3.3:8524409-8524428 | MS.gene069310:CDS | 50.0% |
| ! | TTTTTGTGCCGCAGCTTCCA+TGG | + | chr3.3:8524378-8524397 | MS.gene069310:intron | 50.0% |
| GACTGGTACTACGTCAGAGC+TGG | + | chr3.3:8524241-8524260 | MS.gene069310:CDS | 55.0% | |
| GCTCTGACGTAGTACCAGTC+AGG | - | chr3.3:8524241-8524260 | None:intergenic | 55.0% | |
| TGGCTCCTTATGACCCTGAC+TGG | + | chr3.3:8524224-8524243 | MS.gene069310:CDS | 55.0% | |
| !! | TCGGTGTTGGTGCATTCCAG+AGG | + | chr3.3:8524428-8524447 | MS.gene069310:CDS | 55.0% |
| CTTCCTGGCCATGGAAGCTG+CGG | - | chr3.3:8524389-8524408 | None:intergenic | 60.0% | |
| !! | TTGAGGGGTGGACTCGGTGT+TGG | + | chr3.3:8524415-8524434 | MS.gene069310:CDS | 60.0% |
| GTGCCGCAGCTTCCATGGCC+AGG | + | chr3.3:8524383-8524402 | MS.gene069310:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 8523205 | 8524579 | 8523205 | ID=MS.gene069310 |
| chr3.3 | mRNA | 8523205 | 8524579 | 8523205 | ID=MS.gene069310.t1;Parent=MS.gene069310 |
| chr3.3 | exon | 8523205 | 8523288 | 8523205 | ID=MS.gene069310.t1.exon1;Parent=MS.gene069310.t1 |
| chr3.3 | CDS | 8523205 | 8523288 | 8523205 | ID=cds.MS.gene069310.t1;Parent=MS.gene069310.t1 |
| chr3.3 | exon | 8524172 | 8524262 | 8524172 | ID=MS.gene069310.t1.exon2;Parent=MS.gene069310.t1 |
| chr3.3 | CDS | 8524172 | 8524262 | 8524172 | ID=cds.MS.gene069310.t1;Parent=MS.gene069310.t1 |
| chr3.3 | exon | 8524392 | 8524579 | 8524392 | ID=MS.gene069310.t1.exon3;Parent=MS.gene069310.t1 |
| chr3.3 | CDS | 8524392 | 8524579 | 8524392 | ID=cds.MS.gene069310.t1;Parent=MS.gene069310.t1 |
| Gene Sequence |
| Protein sequence |
