AlfalfaGEDB | MS.gene21564

M. sativa cultivar XinJiangDaYe / MS.gene21564

KEGG: K15688
GO: GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0070647 GO:0071704 GO:0071840 GO:0140096 GO:1901564
PFAM: PF12483.11

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene21564.t1	KEH43290.1	93.5	308	20	0	1	308	1	308	2.50E-161	578.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene21564.t1	Q8L7N4	68.1	310	95	2	3	308	1	310	1.4e-120	434.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene21564.t1	Q1RSJ8	93.5	308	20	0	1	308	1	308	1.8e-161	578.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049170	MS.gene21564	0.82603	3.39E-54	-1.69E-46
MS.gene049356	MS.gene21564	0.83075	2.46E-55	-1.69E-46
MS.gene049369	MS.gene21564	0.800065	1.72E-48	-1.69E-46
MS.gene049427	MS.gene21564	0.809387	1.94E-50	-1.69E-46
MS.gene049609	MS.gene21564	0.802192	6.30E-49	-1.69E-46
MS.gene050301	MS.gene21564	0.860504	1.97E-63	-1.69E-46
MS.gene050397	MS.gene21564	0.819372	1.20E-52	-1.69E-46
MS.gene050400	MS.gene21564	0.821273	4.41E-53	-1.69E-46
MS.gene050406	MS.gene21564	0.80923	2.10E-50	-1.69E-46
MS.gene050426	MS.gene21564	-0.804657	1.94E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene21564.t1	MTR_1g089900	93.506	308	20	0	1	308	1	308	0.0	593
MS.gene21564.t1	MTR_1g089900	93.506	308	20	0	1	308	1	308	0.0	591
MS.gene21564.t1	MTR_7g094290	57.003	307	129	2	3	308	1	305	1.83e-112	329
MS.gene21564.t1	MTR_1g089940	53.612	263	104	3	8	253	8	269	4.08e-87	263
MS.gene21564.t1	MTR_1g089910	49.819	277	105	3	8	262	8	272	7.09e-76	235
MS.gene21564.t1	MTR_1g089910	53.061	245	81	3	27	249	20	252	2.73e-73	228
MS.gene21564.t1	MTR_1g089920	48.276	261	104	3	11	241	11	270	9.16e-70	219
MS.gene21564.t1	MTR_1g089960	46.545	275	112	5	3	244	119	391	3.55e-66	215

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene21564.t1	AT1G63900	68.065	310	95	2	3	308	1	310	3.61e-153	434
MS.gene21564.t1	AT1G63900	70.677	266	76	1	3	266	1	266	2.65e-137	391
MS.gene21564.t1	AT1G59560	49.206	315	139	5	3	307	1	304	1.40e-97	291
MS.gene21564.t1	AT1G59560	49.206	315	139	5	3	307	1	304	2.12e-96	289
MS.gene21564.t1	AT1G59560	50.355	282	127	4	3	274	1	279	6.14e-88	266
MS.gene21564.t1	AT1G59560	50.936	267	118	4	3	259	1	264	3.45e-85	258

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Find 91 sgRNAs with CRISPR-Local

Find 260 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTACACACCAGATACCA+AGG	0.639256	1.1:+65797065	None:intergenic
AACACAATGATGCTGGTTCC+TGG	0.349181	1.1:-65797130	MS.gene21564:CDS
AAGACGACGTCGCAACGAAT+TGG	0.350234	1.1:-65795568	MS.gene21564:CDS
AAGATATCTGGACAAGATAA+TGG	0.385392	1.1:-65795365	MS.gene21564:CDS
AATGAGTTCGTCAATTGTTT+TGG	0.273626	1.1:+65795768	None:intergenic
ACAGTCAAGGAAGTTCCAAC+TGG	0.510024	1.1:+65796395	None:intergenic
ACATAAAATGGCCCTTTGGA+GGG	0.569737	1.1:+65795796	None:intergenic
ACGAACTCATTGCAAATCTT+GGG	0.456055	1.1:-65795756	MS.gene21564:CDS
ACTGGTCGTGTGCGTGTAGT+TGG	0.445032	1.1:-65796684	MS.gene21564:CDS
AGACATTTGAAGAGTCAGGT+CGG	0.672395	1.1:-65796620	MS.gene21564:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAAAAGTCTGACTTTGC+AGG	-	chr1.1:65798268-65798287	MS.gene21564:intron	30.0%
AAAATATAAAGCAGTTCTCG+TGG	+	chr1.1:65797122-65797141	None:intergenic	30.0%
AACAAAAAATAACGCGATTG+AGG	+	chr1.1:65794637-65794656	None:intergenic	30.0%
AACTCTTAAACTGTATGATC+AGG	-	chr1.1:65797247-65797266	MS.gene21564:intron	30.0%
AAGATATCTGGACAAGATAA+TGG	-	chr1.1:65797739-65797758	MS.gene21564:intron	30.0%
AATAACATGATTCCAGTTAC+TGG	-	chr1.1:65795044-65795063	MS.gene21564:intron	30.0%
AATGGAAGTGGTAAAGAAAA+TGG	+	chr1.1:65798067-65798086	None:intergenic	30.0%
AATTAAGCTACCAATTGAAC+AGG	+	chr1.1:65795237-65795256	None:intergenic	30.0%
AATTGGCATTAGCAATATCA+CGG	-	chr1.1:65796814-65796833	MS.gene21564:intron	30.0%
AGGCATATTACACACAAATT+TGG	+	chr1.1:65797897-65797916	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.1	gene	65794544	65798582	65794544	ID=MS.gene21564
chr1.1	mRNA	65794544	65798582	65794544	ID=MS.gene21564.t1;Parent=MS.gene21564
chr1.1	exon	65798503	65798582	65798503	ID=MS.gene21564.t1.exon1;Parent=MS.gene21564.t1
chr1.1	CDS	65798503	65798582	65798503	ID=cds.MS.gene21564.t1;Parent=MS.gene21564.t1
chr1.1	exon	65798332	65798384	65798332	ID=MS.gene21564.t1.exon2;Parent=MS.gene21564.t1
chr1.1	CDS	65798332	65798384	65798332	ID=cds.MS.gene21564.t1;Parent=MS.gene21564.t1
chr1.1	exon	65797289	65797407	65797289	ID=MS.gene21564.t1.exon3;Parent=MS.gene21564.t1
chr1.1	CDS	65797289	65797407	65797289	ID=cds.MS.gene21564.t1;Parent=MS.gene21564.t1
chr1.1	exon	65797076	65797171	65797076	ID=MS.gene21564.t1.exon4;Parent=MS.gene21564.t1
chr1.1	CDS	65797076	65797171	65797076	ID=cds.MS.gene21564.t1;Parent=MS.gene21564.t1
chr1.1	exon	65796578	65796715	65796578	ID=MS.gene21564.t1.exon5;Parent=MS.gene21564.t1
chr1.1	CDS	65796578	65796715	65796578	ID=cds.MS.gene21564.t1;Parent=MS.gene21564.t1
chr1.1	exon	65796385	65796450	65796385	ID=MS.gene21564.t1.exon6;Parent=MS.gene21564.t1
chr1.1	CDS	65796385	65796450	65796385	ID=cds.MS.gene21564.t1;Parent=MS.gene21564.t1
chr1.1	exon	65795745	65795857	65795745	ID=MS.gene21564.t1.exon7;Parent=MS.gene21564.t1
chr1.1	CDS	65795745	65795857	65795745	ID=cds.MS.gene21564.t1;Parent=MS.gene21564.t1
chr1.1	exon	65795561	65795671	65795561	ID=MS.gene21564.t1.exon8;Parent=MS.gene21564.t1
chr1.1	CDS	65795561	65795671	65795561	ID=cds.MS.gene21564.t1;Parent=MS.gene21564.t1
chr1.1	exon	65795363	65795406	65795363	ID=MS.gene21564.t1.exon9;Parent=MS.gene21564.t1
chr1.1	CDS	65795363	65795406	65795363	ID=cds.MS.gene21564.t1;Parent=MS.gene21564.t1
chr1.1	exon	65795180	65795282	65795180	ID=MS.gene21564.t1.exon10;Parent=MS.gene21564.t1
chr1.1	CDS	65795180	65795282	65795180	ID=cds.MS.gene21564.t1;Parent=MS.gene21564.t1
chr1.1	exon	65794544	65794637	65794544	ID=MS.gene21564.t1.exon11;Parent=MS.gene21564.t1
chr1.1	CDS	65794544	65794637	65794544	ID=cds.MS.gene21564.t1;Parent=MS.gene21564.t1

Gene Sequence

>MS.gene21564

ATGGCGATGGTTCCATGGCGTGGCATCGGTTGTTGTTTGAGTGCTGCTGCTCTTTGCCTTCTCGGTAGAACCACTGGCAGGTAGTTTTCACCTCAATCGCGTTATTTTTTGTTCCATTTCATAACATAGTTCAATGTTTTTTTCTGTCTTCTATGATGATAACAATTATTGTTTTTTTTTTTTTTTAATTTTGTGTAGGGATGTTGATATTCTTAAATCTGTTAACCGGGTTAATCAGCTGAGGGAGCTAGGTTTGTGTTTTTTTCAGCAACTGAAACTTATGTTGTTCTTTGATTTATTTTTTTATTTTTTTCAGATGCTAAGCGAGTTTAAGTTGTAGTATTGTTGTGTTGAACTTTGTAGCACCGATGTGCTTGATGTTCGATAGGTGTCAGTGTCGGACACACGTCATTACATTCAATTATGCCATTTTTTTTTTCAAATTATTACTGGTGTCAACGTGTCAGTGTTGTGTTTGTGATAATGCTTCATAGGTGTTGAATAACATGATTCCAGTTACTGGTATTCAAACATAATTATTTTTGTTTACTTTTACCGCCGGGTTTCATTTCTGATGTCTTGTGTGGTTATTTCGTATTTTAAAGAAAGATTGCCGGTTAAACTGGTTGAAGAAAGTACTTTTCTGCATGTTTAAAATTTACAATCTTTCTTTCCATGTTGATGATACTGCCTGTTCAATTGGTAGCTTAATTGCATACAAATTGAAATTGTTTTCTGAACTTACAGCATATCATTTTCTTAAGTTTGTTTTGTTTTTGAGTGGTAGCTACTTGCGGCCAAATGTTGGTTGCATCTGGCTGAAATTGTTAGTTGTCTTTCACATAAACATTATTTGTGTTGTTTGACAATAATCAATTGGCATAAACATTGACCTTTGTCGATGAGATTTTTGCGGCAATTTTTTGTTATAATCATTTTGGTAACAGATTTTTCACCTTACAATCTTTGTACGCATGTTGGCCTCCTTAATATGTACTACTGAATTGTAAGGCTTGTTATTAAAATAAAATTGATGTGTGCTTAGCTGTGAAGAAAATAGAGATTAGATGCACTTTAGCTGTGTTATGGTTAACTACCTGGTATTGGTAAGTAGTGATGCAATCTGTACTGTTGTGGTTTCTTTCTGGTCATGCTTGGGATTTTTGTTTTTTCAGCACAACTGTTGGATGAAGAAATATTGCCCTTGGTTGTTGCAATTTCTGGAAGAGCGGGTTCTGAAACTCCAATTAGCTGCGAGTTCAGTGGTTTAAGAGGTGTTATACTTGAAGAAACAGTATGTATACTTCATTTCTGAAAAGCATGAATAATCTCTCCTCTTATAAGGATGTTGCTTATCTCATTTTAGCCCTTTACAACTAACACTGAACCTGTTTTACAATTTTCTTTTTAGGCAGAGCAACATTTTCTCAAACACAATGATGCTGGTTCCTGGATACAAGATTCTGCGTTAATGCAATCCAGGAGTAACGAAGTTCCTTGGTATCTGGTGTGTAGTTTCTCTCTTTTCTACTGCAGTTGTTGTTGGTTATCTGGATGATGCGATACAAAACACTCCCCTTCTTAAAGTCAATATTTAAGCTTCTGAACTGAACACTCCCCTTTTGGAGTTAGAAAAGGAAAATGATAATAAAAAACAATATTATTTGTGAATATTTTTTTTTTTTGAAGAAGCTAAACTAGCCCACCCAAATTGACACCGGAGAGAATCGAACTTGAGACCTCGAGGAGGAGCACACTCCCAGGTCCCAACCCAATACCACCAGGCCAACCCAAGTGGGTTTATTTGTGAATATATATTCTATGAGTGGAAATTAAATTCATTTGAAATAATTATTTAATGTGTTAGGATGATGGAACTGGTCGTGTGCGTGTAGTTGGAGCTCAGGGTGCTACTGGTTTTGTATTGCCTGTTGCACGTGAGACATTTGAAGAGTCAGGTCGGTCACTTGTACGCGGAACATTGGATTATCTACAAGGTCTAAAGGTGGGAGTGTTGATACTTGGCAGAACACCATTCAATCCCTGCCTCTCACCCTGCAAAATATTAACAAAAAAATTGAAGCATTTAGACGGTTTTTTGTAAACTGACATGATTGAAATTTTATTTTCAGATGCTTGGAGTTAAAAGAATTGAACGGGTACTTCCAGTTGGAACTTCCTTGACTGTTGTCGGTGAGGTAATCTAATTAGTTTCAGATATATAGCTAGTTACTTTCTCAAGGATGTCATATATTACAGAATTTCATTGTAATTGGCATTAGCAATATCACGGAGTAGATAGGTAATGGCGCAAGATATACCAGGTTACTGGCTGGAACAATAATTTCAATAAACATATGCTTCTATGATATATATGGTGCAGATTTTACATGGGAAGGGCTTCTTGTATTGATTACTGTTTACTCCAAGTGAAATGAACTCCATGTTATGAATTATCAAACTCTGATCATAGTCATTGCTGTTTCTCACAAAATGAAATGCATTACAGTATATGATATTATAAACAAAGTCTTTCTGAATAAAATAATAAAATTCTTTGTTCCAAAGAAAATGTCCACGAGAACTGCTTTATATTTTTATATGAGGTCTTACTTCCTACATTCAATTTATCAACTCTGGTGCGTTTTTGTCTCTACTAATGTTAAATAATATTTTGCTGTTTCAAACCTTATTTAAAATAATAACTCTTAAACTGTATGATCAGGCTGCTAAAGACGATGTCGGAACCATTCGAATTCAGCGACCCTCCAAAGGGCCATTTTATGTCTCTCCCAAAACAATTGACGAACTCATTGCAAATCTTGGGAGATGGGCGAGGTTGCTTTACTTTATATTTGCTTATCGTATGTTTTTGCCTACATGGTTTTTATTGACTAAATTATTTTATTAGGTGGTATAAGTGCACCTCTGCGGGTTTGACAGTGTTGGGTGTTTATATGATAGCCAATCATGCTATTCGATACATCATGGAAAGACGACGTCGCAACGAATTGGAAAAAAGGTACACATCACCGGATACAAAACTGAATACCATTGAATGCCTTTCAATTTGGAAGACAAATTTACAATGTAATTTATGAACAATGCCTATGCATATGATTCCACTCTATTTTACGTTACCTCACACCTTTAATAATCTGAACAATTTTATGCAGGGTTCTCGCTGCAGCTGCTAAGATATCTGGACAAGATAATGGAGGTATATTGCAATGGTTATACAATATTTAAGTTTGCAATGGCTGTTTCAACAACTACCTGAAATTTATGATTCTGTCTCAGGTGAAATGGATGACAGTTTATCAGATGGTGCTAAAAGGGAACGTGCAATGCCAAATTTGTGTGTAATATGCCTCGAGCAGGAATATAATTCTGTTTTTGTTCCGTAAGCTCTCAATCTTATCCTCTTATCTACATACTGTAATGTCATGCTGTTACAGGAAGCAGTGGCACTGAAAATAACAAGCATGCTTCCATATATGTTAATCTCTGCCCCTATTATCCATTTTCTTTACCACTTCCATTGATATAGAATATCTCATTACCATTTCTTTCTTATGATCTTTATTGACTATTATCAAACATGAAGAAAAGTTGCTTATTCATCGTAATCGACTCAAAAAAAAAAACATCATGCAACATATATTGCCATAACTGTCTATTGGCTATATTTCAACTTTAAATTCAGTCTGTTTTACATGCAAGAAAAAAAAAGTCTGACTTTGCAGGAAATTTGTGAACTGATCTAACACTGTTACTTGTATTGCATGTGGATACTTACAGATACAAACATGCCTGCTAAAACCACTTGAACTAAGTTGTTCAAAGCCCCTCTAGTAGAGCTATCTATTTGATTTCTCATTCCAGGTATATGTCCCTAAGATTTATATTGTGATGTCAGGTGTGGGCATATGTGCTGCTGTACAGCTTGCTCTTCGCACTTGACCAGTTGTCCTCTTTGCCGGAGACAGATAGAGAAGGCGGTAAAGACTTTCCGTCATTGAGTATTGAGCATACATAA

Protein sequence

>MS.gene21564.t1

MAMVPWRGIGCCLSAAALCLLGRTTGRDVDILKSVNRVNQLRELAQLLDEEILPLVVAISGRAGSETPISCEFSGLRGVILEETAEQHFLKHNDAGSWIQDSALMQSRSNEVPWYLDDGTGRVRVVGAQGATGFVLPVARETFEESGRSLVRGTLDYLQGLKMLGVKRIERVLPVGTSLTVVGEAAKDDVGTIRIQRPSKGPFYVSPKTIDELIANLGRWARWYKCTSAGLTVLGVYMIANHAIRYIMERRRRNELEKRVLAAAAKISGQDNGGEMDDSLSDGAKRERAMPNLCVICLEQEYNSVFVPLLFALDQLSSLPETDREGGKDFPSLSIEHT