Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21564.t1 | KEH43290.1 | 93.5 | 308 | 20 | 0 | 1 | 308 | 1 | 308 | 2.50E-161 | 578.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21564.t1 | Q8L7N4 | 68.1 | 310 | 95 | 2 | 3 | 308 | 1 | 310 | 1.4e-120 | 434.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21564.t1 | Q1RSJ8 | 93.5 | 308 | 20 | 0 | 1 | 308 | 1 | 308 | 1.8e-161 | 578.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049170 | MS.gene21564 | 0.82603 | 3.39E-54 | -1.69E-46 |
| MS.gene049356 | MS.gene21564 | 0.83075 | 2.46E-55 | -1.69E-46 |
| MS.gene049369 | MS.gene21564 | 0.800065 | 1.72E-48 | -1.69E-46 |
| MS.gene049427 | MS.gene21564 | 0.809387 | 1.94E-50 | -1.69E-46 |
| MS.gene049609 | MS.gene21564 | 0.802192 | 6.30E-49 | -1.69E-46 |
| MS.gene050301 | MS.gene21564 | 0.860504 | 1.97E-63 | -1.69E-46 |
| MS.gene050397 | MS.gene21564 | 0.819372 | 1.20E-52 | -1.69E-46 |
| MS.gene050400 | MS.gene21564 | 0.821273 | 4.41E-53 | -1.69E-46 |
| MS.gene050406 | MS.gene21564 | 0.80923 | 2.10E-50 | -1.69E-46 |
| MS.gene050426 | MS.gene21564 | -0.804657 | 1.94E-49 | -1.69E-46 |
| MS.gene050464 | MS.gene21564 | 0.823153 | 1.61E-53 | -1.69E-46 |
| MS.gene050529 | MS.gene21564 | 0.830089 | 3.57E-55 | -1.69E-46 |
| MS.gene050593 | MS.gene21564 | 0.822286 | 2.57E-53 | -1.69E-46 |
| MS.gene050625 | MS.gene21564 | 0.810335 | 1.21E-50 | -1.69E-46 |
| MS.gene050670 | MS.gene21564 | 0.895264 | 1.13E-75 | -1.69E-46 |
| MS.gene050812 | MS.gene21564 | 0.821638 | 3.63E-53 | -1.69E-46 |
| MS.gene05101 | MS.gene21564 | 0.808226 | 3.44E-50 | -1.69E-46 |
| MS.gene05105 | MS.gene21564 | 0.876876 | 9.85E-69 | -1.69E-46 |
| MS.gene051360 | MS.gene21564 | 0.840463 | 8.56E-58 | -1.69E-46 |
| MS.gene051387 | MS.gene21564 | 0.838357 | 3.02E-57 | -1.69E-46 |
| MS.gene051525 | MS.gene21564 | 0.85982 | 3.17E-63 | -1.69E-46 |
| MS.gene051582 | MS.gene21564 | 0.858792 | 6.46E-63 | -1.69E-46 |
| MS.gene051605 | MS.gene21564 | 0.812257 | 4.64E-51 | -1.69E-46 |
| MS.gene051666 | MS.gene21564 | 0.801753 | 7.76E-49 | -1.69E-46 |
| MS.gene052011 | MS.gene21564 | -0.81517 | 1.06E-51 | -1.69E-46 |
| MS.gene052077 | MS.gene21564 | 0.830269 | 3.23E-55 | -1.69E-46 |
| MS.gene052134 | MS.gene21564 | 0.80882 | 2.57E-50 | -1.69E-46 |
| MS.gene052135 | MS.gene21564 | 0.815402 | 9.42E-52 | -1.69E-46 |
| MS.gene052136 | MS.gene21564 | 0.800372 | 1.49E-48 | -1.69E-46 |
| MS.gene052188 | MS.gene21564 | 0.895932 | 5.99E-76 | -1.69E-46 |
| MS.gene052253 | MS.gene21564 | 0.852129 | 5.65E-61 | -1.69E-46 |
| MS.gene052310 | MS.gene21564 | 0.858246 | 9.40E-63 | -1.69E-46 |
| MS.gene052322 | MS.gene21564 | 0.819285 | 1.26E-52 | -1.69E-46 |
| MS.gene052340 | MS.gene21564 | 0.876339 | 1.51E-68 | -1.69E-46 |
| MS.gene052414 | MS.gene21564 | 0.836466 | 9.20E-57 | -1.69E-46 |
| MS.gene052421 | MS.gene21564 | 0.813866 | 2.06E-51 | -1.69E-46 |
| MS.gene052469 | MS.gene21564 | 0.805932 | 1.05E-49 | -1.69E-46 |
| MS.gene052481 | MS.gene21564 | 0.828799 | 7.35E-55 | -1.69E-46 |
| MS.gene052484 | MS.gene21564 | 0.824238 | 9.00E-54 | -1.69E-46 |
| MS.gene052485 | MS.gene21564 | 0.841932 | 3.52E-58 | -1.69E-46 |
| MS.gene052505 | MS.gene21564 | 0.803165 | 3.97E-49 | -1.69E-46 |
| MS.gene052982 | MS.gene21564 | 0.819073 | 1.41E-52 | -1.69E-46 |
| MS.gene053103 | MS.gene21564 | 0.812744 | 3.63E-51 | -1.69E-46 |
| MS.gene053169 | MS.gene21564 | 0.81575 | 7.88E-52 | -1.69E-46 |
| MS.gene053207 | MS.gene21564 | 0.80028 | 1.55E-48 | -1.69E-46 |
| MS.gene053209 | MS.gene21564 | 0.858194 | 9.74E-63 | -1.69E-46 |
| MS.gene053557 | MS.gene21564 | 0.827026 | 1.96E-54 | -1.69E-46 |
| MS.gene053758 | MS.gene21564 | 0.812091 | 5.05E-51 | -1.69E-46 |
| MS.gene053836 | MS.gene21564 | 0.819467 | 1.14E-52 | -1.69E-46 |
| MS.gene053912 | MS.gene21564 | 0.817162 | 3.81E-52 | -1.69E-46 |
| MS.gene053928 | MS.gene21564 | 0.808945 | 2.41E-50 | -1.69E-46 |
| MS.gene054123 | MS.gene21564 | 0.83276 | 7.86E-56 | -1.69E-46 |
| MS.gene054349 | MS.gene21564 | 0.825199 | 5.34E-54 | -1.69E-46 |
| MS.gene054556 | MS.gene21564 | 0.831449 | 1.66E-55 | -1.69E-46 |
| MS.gene054719 | MS.gene21564 | 0.812867 | 3.41E-51 | -1.69E-46 |
| MS.gene054917 | MS.gene21564 | 0.804017 | 2.64E-49 | -1.69E-46 |
| MS.gene054918 | MS.gene21564 | 0.802301 | 5.99E-49 | -1.69E-46 |
| MS.gene054927 | MS.gene21564 | 0.814277 | 1.67E-51 | -1.69E-46 |
| MS.gene055116 | MS.gene21564 | 0.894337 | 2.71E-75 | -1.69E-46 |
| MS.gene055369 | MS.gene21564 | 0.812564 | 3.98E-51 | -1.69E-46 |
| MS.gene055422 | MS.gene21564 | 0.811658 | 6.27E-51 | -1.69E-46 |
| MS.gene055539 | MS.gene21564 | 0.853762 | 1.93E-61 | -1.69E-46 |
| MS.gene05553 | MS.gene21564 | 0.877094 | 8.28E-69 | -1.69E-46 |
| MS.gene055564 | MS.gene21564 | 0.805792 | 1.13E-49 | -1.69E-46 |
| MS.gene055604 | MS.gene21564 | 0.816972 | 4.20E-52 | -1.69E-46 |
| MS.gene055741 | MS.gene21564 | 0.817089 | 3.95E-52 | -1.69E-46 |
| MS.gene055744 | MS.gene21564 | 0.822797 | 1.95E-53 | -1.69E-46 |
| MS.gene055859 | MS.gene21564 | 0.801345 | 9.41E-49 | -1.69E-46 |
| MS.gene056191 | MS.gene21564 | 0.817342 | 3.47E-52 | -1.69E-46 |
| MS.gene056407 | MS.gene21564 | 0.873014 | 2.04E-67 | -1.69E-46 |
| MS.gene056410 | MS.gene21564 | 0.834271 | 3.30E-56 | -1.69E-46 |
| MS.gene056511 | MS.gene21564 | 0.827993 | 1.15E-54 | -1.69E-46 |
| MS.gene056609 | MS.gene21564 | 0.804498 | 2.10E-49 | -1.69E-46 |
| MS.gene056612 | MS.gene21564 | 0.827998 | 1.15E-54 | -1.69E-46 |
| MS.gene056659 | MS.gene21564 | 0.841005 | 6.18E-58 | -1.69E-46 |
| MS.gene056723 | MS.gene21564 | 0.810773 | 9.76E-51 | -1.69E-46 |
| MS.gene056796 | MS.gene21564 | 0.813134 | 2.99E-51 | -1.69E-46 |
| MS.gene056897 | MS.gene21564 | 0.808505 | 3.00E-50 | -1.69E-46 |
| MS.gene05702 | MS.gene21564 | 0.852066 | 5.89E-61 | -1.69E-46 |
| MS.gene057124 | MS.gene21564 | 0.854846 | 9.37E-62 | -1.69E-46 |
| MS.gene057146 | MS.gene21564 | 0.80675 | 7.07E-50 | -1.69E-46 |
| MS.gene057396 | MS.gene21564 | 0.833145 | 6.31E-56 | -1.69E-46 |
| MS.gene057448 | MS.gene21564 | 0.827305 | 1.68E-54 | -1.69E-46 |
| MS.gene057449 | MS.gene21564 | 0.810994 | 8.74E-51 | -1.69E-46 |
| MS.gene057450 | MS.gene21564 | 0.825563 | 4.38E-54 | -1.69E-46 |
| MS.gene057734 | MS.gene21564 | 0.817045 | 4.04E-52 | -1.69E-46 |
| MS.gene057749 | MS.gene21564 | 0.832068 | 1.17E-55 | -1.69E-46 |
| MS.gene057823 | MS.gene21564 | 0.8273 | 1.69E-54 | -1.69E-46 |
| MS.gene057825 | MS.gene21564 | 0.814092 | 1.84E-51 | -1.69E-46 |
| MS.gene058002 | MS.gene21564 | 0.844019 | 9.80E-59 | -1.69E-46 |
| MS.gene058007 | MS.gene21564 | 0.869957 | 2.10E-66 | -1.69E-46 |
| MS.gene058019 | MS.gene21564 | 0.807203 | 5.67E-50 | -1.69E-46 |
| MS.gene058082 | MS.gene21564 | 0.856565 | 2.95E-62 | -1.69E-46 |
| MS.gene05811 | MS.gene21564 | 0.82986 | 4.06E-55 | -1.69E-46 |
| MS.gene058120 | MS.gene21564 | 0.821126 | 4.77E-53 | -1.69E-46 |
| MS.gene058142 | MS.gene21564 | 0.845392 | 4.18E-59 | -1.69E-46 |
| MS.gene058233 | MS.gene21564 | 0.829334 | 5.46E-55 | -1.69E-46 |
| MS.gene058276 | MS.gene21564 | 0.817389 | 3.38E-52 | -1.69E-46 |
| MS.gene058293 | MS.gene21564 | 0.802808 | 4.71E-49 | -1.69E-46 |
| MS.gene058365 | MS.gene21564 | 0.817747 | 2.81E-52 | -1.69E-46 |
| MS.gene058376 | MS.gene21564 | 0.815993 | 6.95E-52 | -1.69E-46 |
| MS.gene058444 | MS.gene21564 | 0.830891 | 2.27E-55 | -1.69E-46 |
| MS.gene058660 | MS.gene21564 | 0.831533 | 1.58E-55 | -1.69E-46 |
| MS.gene058700 | MS.gene21564 | 0.893445 | 6.25E-75 | -1.69E-46 |
| MS.gene05886 | MS.gene21564 | 0.832665 | 8.30E-56 | -1.69E-46 |
| MS.gene058928 | MS.gene21564 | 0.823956 | 1.05E-53 | -1.69E-46 |
| MS.gene058948 | MS.gene21564 | 0.83551 | 1.61E-56 | -1.69E-46 |
| MS.gene059011 | MS.gene21564 | 0.831523 | 1.59E-55 | -1.69E-46 |
| MS.gene05907 | MS.gene21564 | 0.85031 | 1.84E-60 | -1.69E-46 |
| MS.gene059141 | MS.gene21564 | 0.810563 | 1.08E-50 | -1.69E-46 |
| MS.gene059285 | MS.gene21564 | 0.814619 | 1.41E-51 | -1.69E-46 |
| MS.gene059294 | MS.gene21564 | 0.803127 | 4.04E-49 | -1.69E-46 |
| MS.gene059366 | MS.gene21564 | 0.813752 | 2.18E-51 | -1.69E-46 |
| MS.gene059420 | MS.gene21564 | 0.832936 | 7.11E-56 | -1.69E-46 |
| MS.gene059462 | MS.gene21564 | 0.809882 | 1.52E-50 | -1.69E-46 |
| MS.gene059536 | MS.gene21564 | 0.807016 | 6.21E-50 | -1.69E-46 |
| MS.gene059597 | MS.gene21564 | 0.826153 | 3.17E-54 | -1.69E-46 |
| MS.gene05959 | MS.gene21564 | 0.807338 | 5.31E-50 | -1.69E-46 |
| MS.gene059676 | MS.gene21564 | 0.848228 | 7.01E-60 | -1.69E-46 |
| MS.gene059688 | MS.gene21564 | 0.888081 | 8.10E-73 | -1.69E-46 |
| MS.gene059692 | MS.gene21564 | 0.883889 | 3.06E-71 | -1.69E-46 |
| MS.gene059695 | MS.gene21564 | 0.888136 | 7.72E-73 | -1.69E-46 |
| MS.gene059807 | MS.gene21564 | 0.813098 | 3.04E-51 | -1.69E-46 |
| MS.gene05984 | MS.gene21564 | 0.819342 | 1.22E-52 | -1.69E-46 |
| MS.gene059894 | MS.gene21564 | 0.814668 | 1.37E-51 | -1.69E-46 |
| MS.gene060403 | MS.gene21564 | 0.85993 | 2.94E-63 | -1.69E-46 |
| MS.gene060407 | MS.gene21564 | 0.824284 | 8.77E-54 | -1.69E-46 |
| MS.gene060804 | MS.gene21564 | 0.812349 | 4.43E-51 | -1.69E-46 |
| MS.gene060835 | MS.gene21564 | 0.80802 | 3.80E-50 | -1.69E-46 |
| MS.gene060837 | MS.gene21564 | 0.830617 | 2.66E-55 | -1.69E-46 |
| MS.gene061041 | MS.gene21564 | 0.801018 | 1.10E-48 | -1.69E-46 |
| MS.gene061049 | MS.gene21564 | 0.8547 | 1.03E-61 | -1.69E-46 |
| MS.gene061051 | MS.gene21564 | -0.838737 | 2.41E-57 | -1.69E-46 |
| MS.gene061154 | MS.gene21564 | 0.870939 | 9.98E-67 | -1.69E-46 |
| MS.gene061159 | MS.gene21564 | 0.830501 | 2.83E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21564.t1 | MTR_1g089900 | 93.506 | 308 | 20 | 0 | 1 | 308 | 1 | 308 | 0.0 | 593 |
| MS.gene21564.t1 | MTR_1g089900 | 93.506 | 308 | 20 | 0 | 1 | 308 | 1 | 308 | 0.0 | 591 |
| MS.gene21564.t1 | MTR_7g094290 | 57.003 | 307 | 129 | 2 | 3 | 308 | 1 | 305 | 1.83e-112 | 329 |
| MS.gene21564.t1 | MTR_1g089940 | 53.612 | 263 | 104 | 3 | 8 | 253 | 8 | 269 | 4.08e-87 | 263 |
| MS.gene21564.t1 | MTR_1g089910 | 49.819 | 277 | 105 | 3 | 8 | 262 | 8 | 272 | 7.09e-76 | 235 |
| MS.gene21564.t1 | MTR_1g089910 | 53.061 | 245 | 81 | 3 | 27 | 249 | 20 | 252 | 2.73e-73 | 228 |
| MS.gene21564.t1 | MTR_1g089920 | 48.276 | 261 | 104 | 3 | 11 | 241 | 11 | 270 | 9.16e-70 | 219 |
| MS.gene21564.t1 | MTR_1g089960 | 46.545 | 275 | 112 | 5 | 3 | 244 | 119 | 391 | 3.55e-66 | 215 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21564.t1 | AT1G63900 | 68.065 | 310 | 95 | 2 | 3 | 308 | 1 | 310 | 3.61e-153 | 434 |
| MS.gene21564.t1 | AT1G63900 | 70.677 | 266 | 76 | 1 | 3 | 266 | 1 | 266 | 2.65e-137 | 391 |
| MS.gene21564.t1 | AT1G59560 | 49.206 | 315 | 139 | 5 | 3 | 307 | 1 | 304 | 1.40e-97 | 291 |
| MS.gene21564.t1 | AT1G59560 | 49.206 | 315 | 139 | 5 | 3 | 307 | 1 | 304 | 2.12e-96 | 289 |
| MS.gene21564.t1 | AT1G59560 | 50.355 | 282 | 127 | 4 | 3 | 274 | 1 | 279 | 6.14e-88 | 266 |
| MS.gene21564.t1 | AT1G59560 | 50.936 | 267 | 118 | 4 | 3 | 259 | 1 | 264 | 3.45e-85 | 258 |
Find 91 sgRNAs with CRISPR-Local
Find 260 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTTGGTTGTTGCAATTTC+TGG | 0.072072 | 1.1:-65797359 | MS.gene21564:CDS |
| AGGCATATTACACACAAATT+TGG | 0.240221 | 1.1:+65795210 | None:intergenic |
| AATGAGTTCGTCAATTGTTT+TGG | 0.273626 | 1.1:+65795768 | None:intergenic |
| CCACTGAACTCGCAGCTAAT+TGG | 0.286488 | 1.1:+65797317 | None:intergenic |
| GTTTATCAGATGGTGCTAAA+AGG | 0.287406 | 1.1:-65795245 | MS.gene21564:CDS |
| GCTGCTGCTCTTTGCCTTCT+CGG | 0.290499 | 1.1:-65798518 | MS.gene21564:CDS |
| ATATTCTTAAATCTGTTAAC+CGG | 0.312636 | 1.1:-65798354 | MS.gene21564:CDS |
| GACGAACTCATTGCAAATCT+TGG | 0.313400 | 1.1:-65795757 | MS.gene21564:CDS |
| TGACCAGTTGTCCTCTTTGC+CGG | 0.326267 | 1.1:-65794600 | MS.gene21564:CDS |
| GCTGCAGCTGCTAAGATATC+TGG | 0.346053 | 1.1:-65795377 | MS.gene21564:CDS |
| AACACAATGATGCTGGTTCC+TGG | 0.349181 | 1.1:-65797130 | MS.gene21564:CDS |
| AAGACGACGTCGCAACGAAT+TGG | 0.350234 | 1.1:-65795568 | MS.gene21564:CDS |
| TATTTAATGTGTTAGGATGA+TGG | 0.360785 | 1.1:-65796708 | MS.gene21564:intron |
| GTTGGAGCTCAGGGTGCTAC+TGG | 0.381679 | 1.1:-65796666 | MS.gene21564:CDS |
| AAGATATCTGGACAAGATAA+TGG | 0.385392 | 1.1:-65795365 | MS.gene21564:CDS |
| TCAAATGTCTCACGTGCAAC+AGG | 0.406895 | 1.1:+65796633 | None:intergenic |
| TAACGAAGTTCCTTGGTATC+TGG | 0.413346 | 1.1:-65797075 | MS.gene21564:intron |
| GATGTATCGAATAGCATGAT+TGG | 0.432216 | 1.1:+65795596 | None:intergenic |
| TGATTCTGTCTCAGGTGAAA+TGG | 0.436278 | 1.1:-65795274 | MS.gene21564:intron |
| CCAAGGAACTTCGTTACTCC+TGG | 0.438918 | 1.1:+65797082 | None:intergenic |
| TGGAGTTAAAAGAATTGAAC+GGG | 0.443028 | 1.1:-65796423 | MS.gene21564:CDS |
| ACTGGTCGTGTGCGTGTAGT+TGG | 0.445032 | 1.1:-65796684 | MS.gene21564:CDS |
| ACGAACTCATTGCAAATCTT+GGG | 0.456055 | 1.1:-65795756 | MS.gene21564:CDS |
| TGCGAGTTCAGTGGTTTAAG+AGG | 0.458613 | 1.1:-65797308 | MS.gene21564:CDS |
| TCTCCGGCAAAGAGGACAAC+TGG | 0.462158 | 1.1:+65794597 | None:intergenic |
| TTTATCAGATGGTGCTAAAA+GGG | 0.462624 | 1.1:-65795244 | MS.gene21564:CDS |
| GGAACTTCCTTGACTGTTGT+CGG | 0.462916 | 1.1:-65796389 | MS.gene21564:CDS |
| CGTGAGACATTTGAAGAGTC+AGG | 0.472588 | 1.1:-65796624 | MS.gene21564:CDS |
| ATGGTTCCATGGCGTGGCAT+CGG | 0.473635 | 1.1:-65798554 | MS.gene21564:CDS |
| GTCACTTGTACGCGGAACAT+TGG | 0.475799 | 1.1:-65796598 | MS.gene21564:CDS |
| TGTGCGTGTAGTTGGAGCTC+AGG | 0.476871 | 1.1:-65796676 | MS.gene21564:CDS |
| CCGCCTTCTCTATCTGTCTC+CGG | 0.478984 | 1.1:+65794581 | None:intergenic |
| TGGTATAAGTGCACCTCTGC+GGG | 0.485270 | 1.1:-65795648 | MS.gene21564:CDS |
| TGCCTTCTCGGTAGAACCAC+TGG | 0.490436 | 1.1:-65798506 | MS.gene21564:CDS |
| TCTGCGGGTTTGACAGTGTT+GGG | 0.495785 | 1.1:-65795633 | MS.gene21564:CDS |
| GTTAATCAGCTGAGGGAGCT+AGG | 0.497158 | 1.1:-65798331 | MS.gene21564:intron |
| CATTGCAAATCTTGGGAGAT+GGG | 0.502814 | 1.1:-65795749 | MS.gene21564:CDS |
| TTTCTCAAACACAATGATGC+TGG | 0.502960 | 1.1:-65797137 | MS.gene21564:CDS |
| AGAGACATAAAATGGCCCTT+TGG | 0.504948 | 1.1:+65795792 | None:intergenic |
| ACAGTCAAGGAAGTTCCAAC+TGG | 0.510024 | 1.1:+65796395 | None:intergenic |
| TCATTGCAAATCTTGGGAGA+TGG | 0.515552 | 1.1:-65795750 | MS.gene21564:CDS |
| CTCTGCGGGTTTGACAGTGT+TGG | 0.520983 | 1.1:-65795634 | MS.gene21564:CDS |
| GACATAAAATGGCCCTTTGG+AGG | 0.521815 | 1.1:+65795795 | None:intergenic |
| TAACGCAGAATCTTGTATCC+AGG | 0.528211 | 1.1:+65797112 | None:intergenic |
| CAAATCTTGGGAGATGGGCG+AGG | 0.528389 | 1.1:-65795744 | MS.gene21564:intron |
| ATGTGTTAGGATGATGGAAC+TGG | 0.530547 | 1.1:-65796702 | MS.gene21564:intron |
| CGAATTCAGCGACCCTCCAA+AGG | 0.530981 | 1.1:-65795808 | MS.gene21564:CDS |
| GGATTATCTACAAGGTCTAA+AGG | 0.538007 | 1.1:-65796577 | MS.gene21564:intron |
| GGAGGGTCGCTGAATTCGAA+TGG | 0.538766 | 1.1:+65795813 | None:intergenic |
| GGATGAAGAAATATTGCCCT+TGG | 0.545092 | 1.1:-65797375 | MS.gene21564:CDS |
| TCATGCTATTCGATACATCA+TGG | 0.545815 | 1.1:-65795592 | MS.gene21564:CDS |
| GTTGCAATTTCTGGAAGAGC+GGG | 0.547006 | 1.1:-65797350 | MS.gene21564:CDS |
| ATTCTGCGTTAATGCAATCC+AGG | 0.550521 | 1.1:-65797100 | MS.gene21564:CDS |
| CCAGGAGTAACGAAGTTCCT+TGG | 0.551865 | 1.1:-65797082 | MS.gene21564:CDS |
| TTGGAGTTAAAAGAATTGAA+CGG | 0.557101 | 1.1:-65796424 | MS.gene21564:CDS |
| GTGTGTAATATGCCTCGAGC+AGG | 0.564370 | 1.1:-65795202 | MS.gene21564:CDS |
| TTCCTTGACTGTTGTCGGTG+AGG | 0.569124 | 1.1:-65796384 | MS.gene21564:intron |
| ACATAAAATGGCCCTTTGGA+GGG | 0.569737 | 1.1:+65795796 | None:intergenic |
| CCAGAAATTGCAACAACCAA+GGG | 0.569758 | 1.1:+65797359 | None:intergenic |
| TATTCTTAAATCTGTTAACC+GGG | 0.572014 | 1.1:-65798353 | MS.gene21564:CDS |
| CAACAACCGATGCCACGCCA+TGG | 0.573971 | 1.1:+65798548 | None:intergenic |
| TCCAGAAATTGCAACAACCA+AGG | 0.576564 | 1.1:+65797358 | None:intergenic |
| TGAAGATGGCGATGGTTCCA+TGG | 0.576907 | 1.1:-65798565 | None:intergenic |
| GTGCGTGTAGTTGGAGCTCA+GGG | 0.583075 | 1.1:-65796675 | MS.gene21564:CDS |
| ATTGAACGGGTACTTCCAGT+TGG | 0.583520 | 1.1:-65796410 | MS.gene21564:CDS |
| GAATTCAGCGACCCTCCAAA+GGG | 0.585702 | 1.1:-65795807 | MS.gene21564:CDS |
| CCAATTAGCTGCGAGTTCAG+TGG | 0.586654 | 1.1:-65797317 | MS.gene21564:CDS |
| TGTTGCAATTTCTGGAAGAG+CGG | 0.586983 | 1.1:-65797351 | MS.gene21564:CDS |
| TTCTCGGTAGAACCACTGGC+AGG | 0.588432 | 1.1:-65798502 | MS.gene21564:intron |
| TGCCAGTGGTTCTACCGAGA+AGG | 0.589297 | 1.1:+65798504 | None:intergenic |
| CAGAATTATATTCCTGCTCG+AGG | 0.598340 | 1.1:+65795190 | None:intergenic |
| ATGGCGATGGTTCCATGGCG+TGG | 0.610175 | 1.1:-65798560 | MS.gene21564:CDS |
| GGAACATTGGATTATCTACA+AGG | 0.616721 | 1.1:-65796585 | MS.gene21564:CDS |
| GCTCCCTCAGCTGATTAACC+CGG | 0.620987 | 1.1:+65798335 | None:intergenic |
| TACCTCACCGACAACAGTCA+AGG | 0.621671 | 1.1:+65796382 | None:intergenic |
| GTATGCTCAATACTCAATGA+CGG | 0.624155 | 1.1:+65794548 | None:intergenic |
| TCTATCTGTCTCCGGCAAAG+AGG | 0.626419 | 1.1:+65794589 | None:intergenic |
| GTGGTATAAGTGCACCTCTG+CGG | 0.627269 | 1.1:-65795649 | MS.gene21564:CDS |
| CAGGCTGCTAAAGACGATGT+CGG | 0.637534 | 1.1:-65795838 | MS.gene21564:CDS |
| AAACTACACACCAGATACCA+AGG | 0.639256 | 1.1:+65797065 | None:intergenic |
| TTGCCGGAGACAGATAGAGA+AGG | 0.651134 | 1.1:-65794584 | MS.gene21564:CDS |
| GTTGTTGTTGAAGATGGCGA+TGG | 0.654968 | 1.1:-65798573 | None:intergenic |
| TAACCGGGTTAATCAGCTGA+GGG | 0.655570 | 1.1:-65798338 | MS.gene21564:CDS |
| TTAACCGGGTTAATCAGCTG+AGG | 0.666652 | 1.1:-65798339 | MS.gene21564:CDS |
| AGACATTTGAAGAGTCAGGT+CGG | 0.672395 | 1.1:-65796620 | MS.gene21564:CDS |
| CAACACTGTCAAACCCGCAG+AGG | 0.681657 | 1.1:+65795635 | None:intergenic |
| CCGGAGACAGATAGAGAAGG+CGG | 0.686463 | 1.1:-65794581 | MS.gene21564:CDS |
| ATGGATGACAGTTTATCAGA+TGG | 0.687669 | 1.1:-65795255 | MS.gene21564:CDS |
| AGGTGAAAACTACCTGCCAG+TGG | 0.693394 | 1.1:+65798490 | None:intergenic |
| ATATCTGGACAAGATAATGG+AGG | 0.703748 | 1.1:-65795362 | MS.gene21564:intron |
| TCAGGTCGGTCACTTGTACG+CGG | 0.721899 | 1.1:-65796606 | MS.gene21564:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAATTATTTAATGTGTT+AGG | - | chr1.1:65796389-65796408 | MS.gene21564:CDS | 10.0% |
| !!! | AAGAGTTATTATTTTAAATA+AGG | + | chr1.1:65797234-65797253 | None:intergenic | 10.0% |
| !!! | ATTGACTAAATTATTTTATT+AGG | - | chr1.1:65797433-65797452 | MS.gene21564:intron | 10.0% |
| !!! | ATTTTTTGTTATAATCATTT+TGG | - | chr1.1:65795462-65795481 | MS.gene21564:intron | 10.0% |
| !!! | TTTTTTTTTAATTTTGTGTA+GGG | - | chr1.1:65794721-65794740 | MS.gene21564:intron | 10.0% |
| !!! | TTTTTTTTTCAAATTATTAC+TGG | - | chr1.1:65794974-65794993 | MS.gene21564:intron | 10.0% |
| !!! | TTTTTTTTTTAATTTTGTGT+AGG | - | chr1.1:65794720-65794739 | MS.gene21564:intron | 10.0% |
| !! | AAAATTGTTCAGATTATTAA+AGG | + | chr1.1:65797694-65797713 | None:intergenic | 15.0% |
| !! | TAAAAAGAAAATTGTAAAAC+AGG | + | chr1.1:65795934-65795953 | None:intergenic | 15.0% |
| !!! | TGTTTTACAATTTTCTTTTT+AGG | - | chr1.1:65795933-65795952 | MS.gene21564:intron | 15.0% |
| !!! | TTAAATATTGACTTTAAGAA+GGG | + | chr1.1:65796122-65796141 | None:intergenic | 15.0% |
| !!! | TTTTTTGTTAATATTTTGCA+GGG | + | chr1.1:65796600-65796619 | None:intergenic | 15.0% |
| !!! | TTTTTTTGTTAATATTTTGC+AGG | + | chr1.1:65796601-65796620 | None:intergenic | 15.0% |
| !! | AATGAGATATTCTATATCAA+TGG | + | chr1.1:65798085-65798104 | None:intergenic | 20.0% |
| !! | ACATCACAATATAAATCTTA+GGG | + | chr1.1:65798440-65798459 | None:intergenic | 20.0% |
| !! | ATATGCTTCTATGATATATA+TGG | - | chr1.1:65796899-65796918 | MS.gene21564:intron | 20.0% |
| !! | ATATTCTTAAATCTGTTAAC+CGG | - | chr1.1:65794750-65794769 | MS.gene21564:intron | 20.0% |
| !! | TAAAGATCATAAGAAAGAAA+TGG | + | chr1.1:65798109-65798128 | None:intergenic | 20.0% |
| !! | TTACAGAATTTCATTGTAAT+TGG | - | chr1.1:65796797-65796816 | MS.gene21564:intron | 20.0% |
| !!! | AAAAAATTGAAGCATTTAGA+CGG | - | chr1.1:65796615-65796634 | MS.gene21564:CDS | 20.0% |
| !!! | AAATTTTATTTTCAGATGCT+TGG | - | chr1.1:65796661-65796680 | MS.gene21564:CDS | 20.0% |
| !!! | CTGCTTTATATTTTTATATG+AGG | - | chr1.1:65797128-65797147 | MS.gene21564:CDS | 20.0% |
| !!! | CTTAAATATTGACTTTAAGA+AGG | + | chr1.1:65796123-65796142 | None:intergenic | 20.0% |
| !!! | GACTAAATTATTTTATTAGG+TGG | - | chr1.1:65797436-65797455 | MS.gene21564:intron | 20.0% |
| !!! | TAAATATTGACTTTAAGAAG+GGG | + | chr1.1:65796121-65796140 | None:intergenic | 20.0% |
| !!! | TACAATATTTAAGTTTGCAA+TGG | - | chr1.1:65797781-65797800 | MS.gene21564:intron | 20.0% |
| ! | AAGATTTATATTGTGATGTC+AGG | - | chr1.1:65798441-65798460 | MS.gene21564:intron | 25.0% |
| ! | AATTTGTCTTCCAAATTGAA+AGG | + | chr1.1:65797608-65797627 | None:intergenic | 25.0% |
| ! | ATATGTACTACTGAATTGTA+AGG | - | chr1.1:65795533-65795552 | MS.gene21564:intron | 25.0% |
| ! | ATATTCTATATCAATGGAAG+TGG | + | chr1.1:65798079-65798098 | None:intergenic | 25.0% |
| ! | CAATTCAGTAGTACATATTA+AGG | + | chr1.1:65795531-65795550 | None:intergenic | 25.0% |
| ! | CATTGAACTATGTTATGAAA+TGG | + | chr1.1:65794660-65794679 | None:intergenic | 25.0% |
| ! | GACATCACAATATAAATCTT+AGG | + | chr1.1:65798441-65798460 | None:intergenic | 25.0% |
| ! | GGTAAAGAAAATGGATAATA+GGG | + | chr1.1:65798058-65798077 | None:intergenic | 25.0% |
| ! | GTAAAGAAAATGGATAATAG+GGG | + | chr1.1:65798057-65798076 | None:intergenic | 25.0% |
| ! | GTGAATATATATTCTATGAG+TGG | - | chr1.1:65796350-65796369 | MS.gene21564:intron | 25.0% |
| ! | GTTGTTTGACAATAATCAAT+TGG | - | chr1.1:65795401-65795420 | MS.gene21564:intron | 25.0% |
| ! | TACATTCAATTTATCAACTC+TGG | - | chr1.1:65797161-65797180 | MS.gene21564:intron | 25.0% |
| ! | TATTCTTAAATCTGTTAACC+GGG | - | chr1.1:65794751-65794770 | MS.gene21564:intron | 25.0% |
| ! | TATTTAATGTGTTAGGATGA+TGG | - | chr1.1:65796396-65796415 | MS.gene21564:CDS | 25.0% |
| ! | TGGTAAAGAAAATGGATAAT+AGG | + | chr1.1:65798059-65798078 | None:intergenic | 25.0% |
| ! | TTAGTCAATAAAAACCATGT+AGG | + | chr1.1:65797422-65797441 | None:intergenic | 25.0% |
| ! | TTGGAGTTAAAAGAATTGAA+CGG | - | chr1.1:65796680-65796699 | MS.gene21564:CDS | 25.0% |
| !! | AATCTGAACAATTTTATGCA+GGG | - | chr1.1:65797699-65797718 | MS.gene21564:intron | 25.0% |
| !! | GAGTTTGATAATTCATAACA+TGG | + | chr1.1:65796988-65797007 | None:intergenic | 25.0% |
| !! | TAATCTGAACAATTTTATGC+AGG | - | chr1.1:65797698-65797717 | MS.gene21564:intron | 25.0% |
| !!! | AAGTTTGTTTTGTTTTTGAG+TGG | - | chr1.1:65795305-65795324 | MS.gene21564:intron | 25.0% |
| !!! | AGAGTTGATAAATTGAATGT+AGG | + | chr1.1:65797162-65797181 | None:intergenic | 25.0% |
| !!! | GTATTTTAAAGAAAGATTGC+CGG | - | chr1.1:65795138-65795157 | MS.gene21564:intron | 25.0% |
| AAAAAAAAGTCTGACTTTGC+AGG | - | chr1.1:65798268-65798287 | MS.gene21564:intron | 30.0% | |
| AAAATATAAAGCAGTTCTCG+TGG | + | chr1.1:65797122-65797141 | None:intergenic | 30.0% | |
| AACAAAAAATAACGCGATTG+AGG | + | chr1.1:65794637-65794656 | None:intergenic | 30.0% | |
| AACTCTTAAACTGTATGATC+AGG | - | chr1.1:65797247-65797266 | MS.gene21564:intron | 30.0% | |
| AAGATATCTGGACAAGATAA+TGG | - | chr1.1:65797739-65797758 | MS.gene21564:intron | 30.0% | |
| AATAACATGATTCCAGTTAC+TGG | - | chr1.1:65795044-65795063 | MS.gene21564:intron | 30.0% | |
| AATGGAAGTGGTAAAGAAAA+TGG | + | chr1.1:65798067-65798086 | None:intergenic | 30.0% | |
| AATTAAGCTACCAATTGAAC+AGG | + | chr1.1:65795237-65795256 | None:intergenic | 30.0% | |
| AATTGGCATTAGCAATATCA+CGG | - | chr1.1:65796814-65796833 | MS.gene21564:intron | 30.0% | |
| AGGCATATTACACACAAATT+TGG | + | chr1.1:65797897-65797916 | None:intergenic | 30.0% | |
| ATAAGCAACATCCTTATAAG+AGG | + | chr1.1:65795880-65795899 | None:intergenic | 30.0% | |
| ATATAGCCAATAGACAGTTA+TGG | + | chr1.1:65798213-65798232 | None:intergenic | 30.0% | |
| ATATTGCCATAACTGTCTAT+TGG | - | chr1.1:65798204-65798223 | MS.gene21564:intron | 30.0% | |
| ATTCACAAATAAACCCACTT+GGG | + | chr1.1:65796336-65796355 | None:intergenic | 30.0% | |
| CATTACAGTATGTAGATAAG+AGG | + | chr1.1:65797968-65797987 | None:intergenic | 30.0% | |
| GAAATTTATGATTCTGTCTC+AGG | - | chr1.1:65797822-65797841 | MS.gene21564:intron | 30.0% | |
| GAATAATCTCTCCTCTTATA+AGG | - | chr1.1:65795866-65795885 | MS.gene21564:intron | 30.0% | |
| GAGACAGAATCATAAATTTC+AGG | + | chr1.1:65797822-65797841 | None:intergenic | 30.0% | |
| TATGTTTGAATACCAGTAAC+TGG | + | chr1.1:65795059-65795078 | None:intergenic | 30.0% | |
| TATTCACAAATAAACCCACT+TGG | + | chr1.1:65796337-65796356 | None:intergenic | 30.0% | |
| TGGAGTTAAAAGAATTGAAC+GGG | - | chr1.1:65796681-65796700 | MS.gene21564:CDS | 30.0% | |
| TTCAGTAGTACATATTAAGG+AGG | + | chr1.1:65795528-65795547 | None:intergenic | 30.0% | |
| TTTGAACAACTTAGTTCAAG+TGG | + | chr1.1:65798369-65798388 | None:intergenic | 30.0% | |
| ! | AAATAGATAGCTCTACTAGA+GGG | + | chr1.1:65798394-65798413 | None:intergenic | 30.0% |
| ! | AATGAGTTCGTCAATTGTTT+TGG | + | chr1.1:65797339-65797358 | None:intergenic | 30.0% |
| ! | ATAATGGAGGTATATTGCAA+TGG | - | chr1.1:65797755-65797774 | MS.gene21564:intron | 30.0% |
| ! | ATATGGTGCAGATTTTACAT+GGG | - | chr1.1:65796916-65796935 | MS.gene21564:intron | 30.0% |
| ! | ATGAGTTCGTCAATTGTTTT+GGG | + | chr1.1:65797338-65797357 | None:intergenic | 30.0% |
| ! | TATAGCTAGTTACTTTCTCA+AGG | - | chr1.1:65796764-65796783 | MS.gene21564:intron | 30.0% |
| ! | TATATGGTGCAGATTTTACA+TGG | - | chr1.1:65796915-65796934 | MS.gene21564:intron | 30.0% |
| ! | TCTATTTGATTTCTCATTCC+AGG | - | chr1.1:65798407-65798426 | MS.gene21564:intron | 30.0% |
| ! | TGTTTGTGATAATGCTTCAT+AGG | - | chr1.1:65795016-65795035 | MS.gene21564:intron | 30.0% |
| ! | TTCAGATTATTAAAGGTGTG+AGG | + | chr1.1:65797687-65797706 | None:intergenic | 30.0% |
| ! | TTCCTTTTCTAACTCCAAAA+GGG | + | chr1.1:65796164-65796183 | None:intergenic | 30.0% |
| ! | TTTATCAGATGGTGCTAAAA+GGG | - | chr1.1:65797860-65797879 | MS.gene21564:intron | 30.0% |
| ! | TTTCCTTTTCTAACTCCAAA+AGG | + | chr1.1:65796165-65796184 | None:intergenic | 30.0% |
| !! | ATGGTATTCAGTTTTGTATC+CGG | + | chr1.1:65797579-65797598 | None:intergenic | 30.0% |
| !! | TTGAGTATTGAGCATACATA+AGG | - | chr1.1:65798562-65798581 | MS.gene21564:CDS | 30.0% |
| !! | TTTTTGTTTACTTTTACCGC+CGG | - | chr1.1:65795083-65795102 | MS.gene21564:intron | 30.0% |
| AAATCTTAGGGACATATACC+TGG | + | chr1.1:65798428-65798447 | None:intergenic | 35.0% | |
| AACATGGAGTTCATTTCACT+TGG | + | chr1.1:65796972-65796991 | None:intergenic | 35.0% | |
| AAGACATCAGAAATGAAACC+CGG | + | chr1.1:65795105-65795124 | None:intergenic | 35.0% | |
| ACATGCGTACAAAGATTGTA+AGG | + | chr1.1:65795502-65795521 | None:intergenic | 35.0% | |
| ACGAACTCATTGCAAATCTT+GGG | - | chr1.1:65797348-65797367 | MS.gene21564:CDS | 35.0% | |
| AGGATAAGATTGAGAGCTTA+CGG | + | chr1.1:65797948-65797967 | None:intergenic | 35.0% | |
| AGGTTCAGTGTTAGTTGTAA+AGG | + | chr1.1:65795914-65795933 | None:intergenic | 35.0% | |
| ATGGATGACAGTTTATCAGA+TGG | - | chr1.1:65797849-65797868 | MS.gene21564:intron | 35.0% | |
| CCATTGAATGCCTTTCAATT+TGG | - | chr1.1:65797595-65797614 | MS.gene21564:intron | 35.0% | |
| CTTTCTTCAACCAGTTTAAC+CGG | + | chr1.1:65795160-65795179 | None:intergenic | 35.0% | |
| GATGTATCGAATAGCATGAT+TGG | + | chr1.1:65797511-65797530 | None:intergenic | 35.0% | |
| GGAACATTGGATTATCTACA+AGG | - | chr1.1:65796519-65796538 | MS.gene21564:intron | 35.0% | |
| GGATTATCTACAAGGTCTAA+AGG | - | chr1.1:65796527-65796546 | MS.gene21564:intron | 35.0% | |
| GGTTCAGTGTTAGTTGTAAA+GGG | + | chr1.1:65795913-65795932 | None:intergenic | 35.0% | |
| GTATGCTCAATACTCAATGA+CGG | + | chr1.1:65798559-65798578 | None:intergenic | 35.0% | |
| TACAATCTTTGTACGCATGT+TGG | - | chr1.1:65795502-65795521 | MS.gene21564:intron | 35.0% | |
| TAGAGTGGAATCATATGCAT+AGG | + | chr1.1:65797654-65797673 | None:intergenic | 35.0% | |
| TATATTGTGATGTCAGGTGT+GGG | - | chr1.1:65798447-65798466 | MS.gene21564:intron | 35.0% | |
| TATCTACAAGGTCTAAAGGT+GGG | - | chr1.1:65796531-65796550 | MS.gene21564:intron | 35.0% | |
| TATGGTTAACTACCTGGTAT+TGG | - | chr1.1:65795628-65795647 | MS.gene21564:CDS | 35.0% | |
| TCATGCTATTCGATACATCA+TGG | - | chr1.1:65797512-65797531 | MS.gene21564:intron | 35.0% | |
| TGAGGTAACGTAAAATAGAG+TGG | + | chr1.1:65797669-65797688 | None:intergenic | 35.0% | |
| TTATATTGTGATGTCAGGTG+TGG | - | chr1.1:65798446-65798465 | MS.gene21564:intron | 35.0% | |
| TTATCTACAAGGTCTAAAGG+TGG | - | chr1.1:65796530-65796549 | MS.gene21564:intron | 35.0% | |
| TTCATTTCTGATGTCTTGTG+TGG | - | chr1.1:65795108-65795127 | MS.gene21564:intron | 35.0% | |
| TTTCTCAAACACAATGATGC+TGG | - | chr1.1:65795967-65795986 | MS.gene21564:intron | 35.0% | |
| ! | AATAGATAGCTCTACTAGAG+GGG | + | chr1.1:65798393-65798412 | None:intergenic | 35.0% |
| ! | ACTGTTACTTGTATTGCATG+TGG | - | chr1.1:65798312-65798331 | MS.gene21564:intron | 35.0% |
| ! | ATATCTGGACAAGATAATGG+AGG | - | chr1.1:65797742-65797761 | MS.gene21564:intron | 35.0% |
| ! | CAAATAGATAGCTCTACTAG+AGG | + | chr1.1:65798395-65798414 | None:intergenic | 35.0% |
| ! | CTTTGTCGATGAGATTTTTG+CGG | - | chr1.1:65795437-65795456 | MS.gene21564:intron | 35.0% |
| ! | GTTTATCAGATGGTGCTAAA+AGG | - | chr1.1:65797859-65797878 | MS.gene21564:intron | 35.0% |
| ! | TCCTTTTCTAACTCCAAAAG+GGG | + | chr1.1:65796163-65796182 | None:intergenic | 35.0% |
| ! | TTAATATTTTGCAGGGTGAG+AGG | + | chr1.1:65796593-65796612 | None:intergenic | 35.0% |
| ! | TTTTCTACTGCAGTTGTTGT+TGG | - | chr1.1:65796067-65796086 | MS.gene21564:intron | 35.0% |
| !! | ATCGTATGTTTTTGCCTACA+TGG | - | chr1.1:65797405-65797424 | MS.gene21564:intron | 35.0% |
| !! | CCAAATTGAAAGGCATTCAA+TGG | + | chr1.1:65797598-65797617 | None:intergenic | 35.0% |
| !! | TTTTGTTTACTTTTACCGCC+GGG | - | chr1.1:65795084-65795103 | MS.gene21564:intron | 35.0% |
| !!! | GTTTTGGGAGAGACATAAAA+TGG | + | chr1.1:65797323-65797342 | None:intergenic | 35.0% |
| !!! | TGTTTTTTCAGCACAACTGT+TGG | - | chr1.1:65795708-65795727 | MS.gene21564:intron | 35.0% |
| !!! | TTAGTTCAAGTGGTTTTAGC+AGG | + | chr1.1:65798359-65798378 | None:intergenic | 35.0% |
| AAACTACACACCAGATACCA+AGG | + | chr1.1:65796042-65796061 | None:intergenic | 40.0% | |
| AACAGGCAGTATCATCAACA+TGG | + | chr1.1:65795220-65795239 | None:intergenic | 40.0% | |
| ACAAATAAACCCACTTGGGT+TGG | + | chr1.1:65796332-65796351 | None:intergenic | 40.0% | |
| ACATAAAATGGCCCTTTGGA+GGG | + | chr1.1:65797311-65797330 | None:intergenic | 40.0% | |
| AGACATTTGAAGAGTCAGGT+CGG | - | chr1.1:65796484-65796503 | MS.gene21564:intron | 40.0% | |
| AGAGACATAAAATGGCCCTT+TGG | + | chr1.1:65797315-65797334 | None:intergenic | 40.0% | |
| AGCAATATCACGGAGTAGAT+AGG | - | chr1.1:65796824-65796843 | MS.gene21564:intron | 40.0% | |
| ATCACGGAGTAGATAGGTAA+TGG | - | chr1.1:65796830-65796849 | MS.gene21564:intron | 40.0% | |
| ATTCTGCGTTAATGCAATCC+AGG | - | chr1.1:65796004-65796023 | MS.gene21564:intron | 40.0% | |
| CAGAATTATATTCCTGCTCG+AGG | + | chr1.1:65797917-65797936 | None:intergenic | 40.0% | |
| CATCACTACTTACCAATACC+AGG | + | chr1.1:65795643-65795662 | None:intergenic | 40.0% | |
| CATTGCAAATCTTGGGAGAT+GGG | - | chr1.1:65797355-65797374 | MS.gene21564:CDS | 40.0% | |
| CCAGAAATTGCAACAACCAA+GGG | + | chr1.1:65795748-65795767 | None:intergenic | 40.0% | |
| CGCAAAAATCTCATCGACAA+AGG | + | chr1.1:65795439-65795458 | None:intergenic | 40.0% | |
| CTATCGAACATCAAGCACAT+CGG | + | chr1.1:65794912-65794931 | None:intergenic | 40.0% | |
| CTGTAATGTCATGCTGTTAC+AGG | - | chr1.1:65797980-65797999 | MS.gene21564:intron | 40.0% | |
| CTGTGTTATGGTTAACTACC+TGG | - | chr1.1:65795622-65795641 | MS.gene21564:CDS | 40.0% | |
| GACGAACTCATTGCAAATCT+TGG | - | chr1.1:65797347-65797366 | MS.gene21564:CDS | 40.0% | |
| GATGATACTGCCTGTTCAAT+TGG | - | chr1.1:65795224-65795243 | MS.gene21564:CDS | 40.0% | |
| GATGCACTTTAGCTGTGTTA+TGG | - | chr1.1:65795610-65795629 | MS.gene21564:CDS | 40.0% | |
| GGATGAAGAAATATTGCCCT+TGG | - | chr1.1:65795729-65795748 | MS.gene21564:intron | 40.0% | |
| GGGGCAGAGATTAACATATA+TGG | + | chr1.1:65798038-65798057 | None:intergenic | 40.0% | |
| GTACTGTTGTGGTTTCTTTC+TGG | - | chr1.1:65795669-65795688 | MS.gene21564:intron | 40.0% | |
| GTCGCAACGAATTGGAAAAA+AGG | - | chr1.1:65797544-65797563 | MS.gene21564:intron | 40.0% | |
| TAACGAAGTTCCTTGGTATC+TGG | - | chr1.1:65796029-65796048 | MS.gene21564:intron | 40.0% | |
| TAACGCAGAATCTTGTATCC+AGG | + | chr1.1:65795995-65796014 | None:intergenic | 40.0% | |
| TCATTGCAAATCTTGGGAGA+TGG | - | chr1.1:65797354-65797373 | MS.gene21564:CDS | 40.0% | |
| TCCAGAAATTGCAACAACCA+AGG | + | chr1.1:65795749-65795768 | None:intergenic | 40.0% | |
| TGATGCAATCTGTACTGTTG+TGG | - | chr1.1:65795658-65795677 | MS.gene21564:intron | 40.0% | |
| TGATTCTGTCTCAGGTGAAA+TGG | - | chr1.1:65797830-65797849 | MS.gene21564:intron | 40.0% | |
| ! | AGAAAGATTGCCGGTTAAAC+TGG | - | chr1.1:65795147-65795166 | MS.gene21564:intron | 40.0% |
| ! | ATTCTCTCCGGTGTCAATTT+GGG | + | chr1.1:65796252-65796271 | None:intergenic | 40.0% |
| ! | GGAAAAAAGGTACACATCAC+CGG | - | chr1.1:65797557-65797576 | MS.gene21564:intron | 40.0% |
| ! | GTGCAGATTTTACATGGGAA+GGG | - | chr1.1:65796921-65796940 | MS.gene21564:intron | 40.0% |
| ! | GTTCTCGTGGACATTTTCTT+TGG | + | chr1.1:65797109-65797128 | None:intergenic | 40.0% |
| ! | GTTTCTTTCTGGTCATGCTT+GGG | - | chr1.1:65795680-65795699 | MS.gene21564:intron | 40.0% |
| ! | TGCAGTTGTTGTTGGTTATC+TGG | - | chr1.1:65796075-65796094 | MS.gene21564:intron | 40.0% |
| ! | TGTTGCAATTTCTGGAAGAG+CGG | - | chr1.1:65795753-65795772 | MS.gene21564:CDS | 40.0% |
| !! | ATGTGTTAGGATGATGGAAC+TGG | - | chr1.1:65796402-65796421 | MS.gene21564:CDS | 40.0% |
| !! | TTTTGAGTGGTAGCTACTTG+CGG | - | chr1.1:65795318-65795337 | MS.gene21564:intron | 40.0% |
| !!! | TCCCCTTTTGGAGTTAGAAA+AGG | - | chr1.1:65796159-65796178 | MS.gene21564:intron | 40.0% |
| ACAGTCAAGGAAGTTCCAAC+TGG | + | chr1.1:65796712-65796731 | None:intergenic | 45.0% | |
| ACATCAGAAATGAAACCCGG+CGG | + | chr1.1:65795102-65795121 | None:intergenic | 45.0% | |
| AGATATACCAGGTTACTGGC+TGG | - | chr1.1:65796857-65796876 | MS.gene21564:intron | 45.0% | |
| AGCCAGATGCAACCAACATT+TGG | + | chr1.1:65795344-65795363 | None:intergenic | 45.0% | |
| ATTGAACGGGTACTTCCAGT+TGG | - | chr1.1:65796694-65796713 | MS.gene21564:CDS | 45.0% | |
| CCCTTGGTTGTTGCAATTTC+TGG | - | chr1.1:65795745-65795764 | MS.gene21564:CDS | 45.0% | |
| CGATGTGCTTGATGTTCGAT+AGG | - | chr1.1:65794910-65794929 | MS.gene21564:intron | 45.0% | |
| CGCAAGATATACCAGGTTAC+TGG | - | chr1.1:65796853-65796872 | MS.gene21564:intron | 45.0% | |
| CGTGAGACATTTGAAGAGTC+AGG | - | chr1.1:65796480-65796499 | MS.gene21564:intron | 45.0% | |
| GACATAAAATGGCCCTTTGG+AGG | + | chr1.1:65797312-65797331 | None:intergenic | 45.0% | |
| GGAACTTCCTTGACTGTTGT+CGG | - | chr1.1:65796715-65796734 | MS.gene21564:intron | 45.0% | |
| GTAATGGCGCAAGATATACC+AGG | - | chr1.1:65796846-65796865 | MS.gene21564:intron | 45.0% | |
| GTCTCAAGTTCGATTCTCTC+CGG | + | chr1.1:65796264-65796283 | None:intergenic | 45.0% | |
| TAACCGGGTTAATCAGCTGA+GGG | - | chr1.1:65794766-65794785 | MS.gene21564:intron | 45.0% | |
| TATTGTTCCAGCCAGTAACC+TGG | + | chr1.1:65796867-65796886 | None:intergenic | 45.0% | |
| TCAAATGTCTCACGTGCAAC+AGG | + | chr1.1:65796474-65796493 | None:intergenic | 45.0% | |
| TGCGAGTTCAGTGGTTTAAG+AGG | - | chr1.1:65795796-65795815 | MS.gene21564:CDS | 45.0% | |
| TGTTCGATAGGTGTCAGTGT+CGG | - | chr1.1:65794922-65794941 | MS.gene21564:intron | 45.0% | |
| TTAACCGGGTTAATCAGCTG+AGG | - | chr1.1:65794765-65794784 | MS.gene21564:intron | 45.0% | |
| ! | GATTCTCTCCGGTGTCAATT+TGG | + | chr1.1:65796253-65796272 | None:intergenic | 45.0% |
| ! | GGTGCAGATTTTACATGGGA+AGG | - | chr1.1:65796920-65796939 | MS.gene21564:intron | 45.0% |
| ! | GGTTTCTTTCTGGTCATGCT+TGG | - | chr1.1:65795679-65795698 | MS.gene21564:intron | 45.0% |
| ! | GTTGCAATTTCTGGAAGAGC+GGG | - | chr1.1:65795754-65795773 | MS.gene21564:CDS | 45.0% |
| ! | TGAACTGAACACTCCCCTTT+TGG | - | chr1.1:65796147-65796166 | MS.gene21564:intron | 45.0% |
| !! | AACACAATGATGCTGGTTCC+TGG | - | chr1.1:65795974-65795993 | MS.gene21564:intron | 45.0% |
| !! | AAGGTGGGAGTGTTGATACT+TGG | - | chr1.1:65796546-65796565 | MS.gene21564:intron | 45.0% |
| !! | TAATAATTTGAAAAAAAAAA+TGG | + | chr1.1:65794973-65794992 | None:intergenic | 5.0% |
| AAGACGACGTCGCAACGAAT+TGG | - | chr1.1:65797536-65797555 | MS.gene21564:intron | 50.0% | |
| AGCTACTTGCGGCCAAATGT+TGG | - | chr1.1:65795329-65795348 | MS.gene21564:intron | 50.0% | |
| AGGTGAAAACTACCTGCCAG+TGG | + | chr1.1:65794617-65794636 | None:intergenic | 50.0% | |
| CAGGCTGCTAAAGACGATGT+CGG | - | chr1.1:65797266-65797285 | MS.gene21564:intron | 50.0% | |
| CATGCTGTTACAGGAAGCAG+TGG | - | chr1.1:65797989-65798008 | MS.gene21564:intron | 50.0% | |
| CCAAGGAACTTCGTTACTCC+TGG | + | chr1.1:65796025-65796044 | None:intergenic | 50.0% | |
| CCAATTAGCTGCGAGTTCAG+TGG | - | chr1.1:65795787-65795806 | MS.gene21564:CDS | 50.0% | |
| CCACTGAACTCGCAGCTAAT+TGG | + | chr1.1:65795790-65795809 | None:intergenic | 50.0% | |
| CCAGGAGTAACGAAGTTCCT+TGG | - | chr1.1:65796022-65796041 | MS.gene21564:intron | 50.0% | |
| GAATCGAACTTGAGACCTCG+AGG | - | chr1.1:65796268-65796287 | MS.gene21564:intron | 50.0% | |
| GAATTCAGCGACCCTCCAAA+GGG | - | chr1.1:65797297-65797316 | MS.gene21564:CDS | 50.0% | |
| GCTGCAGCTGCTAAGATATC+TGG | - | chr1.1:65797727-65797746 | MS.gene21564:intron | 50.0% | |
| GTCACTTGTACGCGGAACAT+TGG | - | chr1.1:65796506-65796525 | MS.gene21564:intron | 50.0% | |
| GTGGTATAAGTGCACCTCTG+CGG | - | chr1.1:65797455-65797474 | MS.gene21564:intron | 50.0% | |
| GTGTGTAATATGCCTCGAGC+AGG | - | chr1.1:65797902-65797921 | MS.gene21564:intron | 50.0% | |
| GTTAATCAGCTGAGGGAGCT+AGG | - | chr1.1:65794773-65794792 | MS.gene21564:intron | 50.0% | |
| TACCTCACCGACAACAGTCA+AGG | + | chr1.1:65796725-65796744 | None:intergenic | 50.0% | |
| TAGCCCACCCAAATTGACAC+CGG | - | chr1.1:65796242-65796261 | MS.gene21564:intron | 50.0% | |
| TCTATCTGTCTCCGGCAAAG+AGG | + | chr1.1:65798518-65798537 | None:intergenic | 50.0% | |
| TCTGCGGGTTTGACAGTGTT+GGG | - | chr1.1:65797471-65797490 | MS.gene21564:intron | 50.0% | |
| TGACCAGTTGTCCTCTTTGC+CGG | - | chr1.1:65798504-65798523 | MS.gene21564:CDS | 50.0% | |
| TGGTATAAGTGCACCTCTGC+GGG | - | chr1.1:65797456-65797475 | MS.gene21564:intron | 50.0% | |
| TTCCTTGACTGTTGTCGGTG+AGG | - | chr1.1:65796720-65796739 | MS.gene21564:intron | 50.0% | |
| TTGCCGGAGACAGATAGAGA+AGG | - | chr1.1:65798520-65798539 | MS.gene21564:CDS | 50.0% | |
| ! | ATTTTGCAGGGTGAGAGGCA+GGG | + | chr1.1:65796588-65796607 | None:intergenic | 50.0% |
| ! | GGCCAAATGTTGGTTGCATC+TGG | - | chr1.1:65795339-65795358 | MS.gene21564:intron | 50.0% |
| ! | TATTTTGCAGGGTGAGAGGC+AGG | + | chr1.1:65796589-65796608 | None:intergenic | 50.0% |
| ! | TCTCCGGTGTCAATTTGGGT+GGG | + | chr1.1:65796248-65796267 | None:intergenic | 50.0% |
| ACTGGTCGTGTGCGTGTAGT+TGG | - | chr1.1:65796420-65796439 | MS.gene21564:CDS | 55.0% | |
| ATGGTTCCATGGCGTGGCAT+CGG | - | chr1.1:65794550-65794569 | MS.gene21564:CDS | 55.0% | |
| CAAATCTTGGGAGATGGGCG+AGG | - | chr1.1:65797360-65797379 | MS.gene21564:CDS | 55.0% | |
| CAACACTGTCAAACCCGCAG+AGG | + | chr1.1:65797472-65797491 | None:intergenic | 55.0% | |
| CGAATTCAGCGACCCTCCAA+AGG | - | chr1.1:65797296-65797315 | MS.gene21564:CDS | 55.0% | |
| CTCTGCGGGTTTGACAGTGT+TGG | - | chr1.1:65797470-65797489 | MS.gene21564:intron | 55.0% | |
| GCTCCCTCAGCTGATTAACC+CGG | + | chr1.1:65794772-65794791 | None:intergenic | 55.0% | |
| GCTGCTGCTCTTTGCCTTCT+CGG | - | chr1.1:65794586-65794605 | MS.gene21564:CDS | 55.0% | |
| GGAGGGTCGCTGAATTCGAA+TGG | + | chr1.1:65797294-65797313 | None:intergenic | 55.0% | |
| GGTGAGAGGCAGGGATTGAA+TGG | + | chr1.1:65796579-65796598 | None:intergenic | 55.0% | |
| GTGCGTGTAGTTGGAGCTCA+GGG | - | chr1.1:65796429-65796448 | MS.gene21564:CDS | 55.0% | |
| TCAGGTCGGTCACTTGTACG+CGG | - | chr1.1:65796498-65796517 | MS.gene21564:intron | 55.0% | |
| TCGAACTTGAGACCTCGAGG+AGG | - | chr1.1:65796271-65796290 | MS.gene21564:intron | 55.0% | |
| TCTCCGGCAAAGAGGACAAC+TGG | + | chr1.1:65798510-65798529 | None:intergenic | 55.0% | |
| TGCCTTCTCGGTAGAACCAC+TGG | - | chr1.1:65794598-65794617 | MS.gene21564:CDS | 55.0% | |
| TGTGCGTGTAGTTGGAGCTC+AGG | - | chr1.1:65796428-65796447 | MS.gene21564:CDS | 55.0% | |
| TTCTCGGTAGAACCACTGGC+AGG | - | chr1.1:65794602-65794621 | MS.gene21564:CDS | 55.0% | |
| ! | CTCTCCGGTGTCAATTTGGG+TGG | + | chr1.1:65796249-65796268 | None:intergenic | 55.0% |
| ! | TGCCAGTGGTTCTACCGAGA+AGG | + | chr1.1:65794603-65794622 | None:intergenic | 55.0% |
| ! | TGGCCTGGTGGTATTGGGTT+GGG | + | chr1.1:65796312-65796331 | None:intergenic | 55.0% |
| ! | TTGGCCTGGTGGTATTGGGT+TGG | + | chr1.1:65796313-65796332 | None:intergenic | 55.0% |
| !! | GTGGTATTGGGTTGGGACCT+GGG | + | chr1.1:65796305-65796324 | None:intergenic | 55.0% |
| !! | TAAACCCACTTGGGTTGGCC+TGG | + | chr1.1:65796327-65796346 | None:intergenic | 55.0% |
| !! | TGGGTTGGCCTGGTGGTATT+GGG | + | chr1.1:65796317-65796336 | None:intergenic | 55.0% |
| !! | TTGGGTTGGCCTGGTGGTAT+TGG | + | chr1.1:65796318-65796337 | None:intergenic | 55.0% |
| ACCACCAGGCCAACCCAAGT+GGG | - | chr1.1:65796320-65796339 | MS.gene21564:intron | 60.0% | |
| ATGGCGATGGTTCCATGGCG+TGG | - | chr1.1:65794544-65794563 | MS.gene21564:CDS | 60.0% | |
| CAACAACCGATGCCACGCCA+TGG | + | chr1.1:65794559-65794578 | None:intergenic | 60.0% | |
| GGTCCCAACCCAATACCACC+AGG | - | chr1.1:65796306-65796325 | MS.gene21564:intron | 60.0% | |
| TACCACCAGGCCAACCCAAG+TGG | - | chr1.1:65796319-65796338 | MS.gene21564:intron | 60.0% | |
| ! | GTTGGAGCTCAGGGTGCTAC+TGG | - | chr1.1:65796438-65796457 | MS.gene21564:intron | 60.0% |
| !! | GGTGGTATTGGGTTGGGACC+TGG | + | chr1.1:65796306-65796325 | None:intergenic | 60.0% |
| ! | TCGAGGAGGAGCACACTCCC+AGG | - | chr1.1:65796285-65796304 | MS.gene21564:intron | 65.0% |
| ! | TGGGAGTGTGCTCCTCCTCG+AGG | + | chr1.1:65796286-65796305 | None:intergenic | 65.0% |
| !! | ACCCACTTGGGTTGGCCTGG+TGG | + | chr1.1:65796324-65796343 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 65794544 | 65798582 | 65794544 | ID=MS.gene21564 |
| chr1.1 | mRNA | 65794544 | 65798582 | 65794544 | ID=MS.gene21564.t1;Parent=MS.gene21564 |
| chr1.1 | exon | 65798503 | 65798582 | 65798503 | ID=MS.gene21564.t1.exon1;Parent=MS.gene21564.t1 |
| chr1.1 | CDS | 65798503 | 65798582 | 65798503 | ID=cds.MS.gene21564.t1;Parent=MS.gene21564.t1 |
| chr1.1 | exon | 65798332 | 65798384 | 65798332 | ID=MS.gene21564.t1.exon2;Parent=MS.gene21564.t1 |
| chr1.1 | CDS | 65798332 | 65798384 | 65798332 | ID=cds.MS.gene21564.t1;Parent=MS.gene21564.t1 |
| chr1.1 | exon | 65797289 | 65797407 | 65797289 | ID=MS.gene21564.t1.exon3;Parent=MS.gene21564.t1 |
| chr1.1 | CDS | 65797289 | 65797407 | 65797289 | ID=cds.MS.gene21564.t1;Parent=MS.gene21564.t1 |
| chr1.1 | exon | 65797076 | 65797171 | 65797076 | ID=MS.gene21564.t1.exon4;Parent=MS.gene21564.t1 |
| chr1.1 | CDS | 65797076 | 65797171 | 65797076 | ID=cds.MS.gene21564.t1;Parent=MS.gene21564.t1 |
| chr1.1 | exon | 65796578 | 65796715 | 65796578 | ID=MS.gene21564.t1.exon5;Parent=MS.gene21564.t1 |
| chr1.1 | CDS | 65796578 | 65796715 | 65796578 | ID=cds.MS.gene21564.t1;Parent=MS.gene21564.t1 |
| chr1.1 | exon | 65796385 | 65796450 | 65796385 | ID=MS.gene21564.t1.exon6;Parent=MS.gene21564.t1 |
| chr1.1 | CDS | 65796385 | 65796450 | 65796385 | ID=cds.MS.gene21564.t1;Parent=MS.gene21564.t1 |
| chr1.1 | exon | 65795745 | 65795857 | 65795745 | ID=MS.gene21564.t1.exon7;Parent=MS.gene21564.t1 |
| chr1.1 | CDS | 65795745 | 65795857 | 65795745 | ID=cds.MS.gene21564.t1;Parent=MS.gene21564.t1 |
| chr1.1 | exon | 65795561 | 65795671 | 65795561 | ID=MS.gene21564.t1.exon8;Parent=MS.gene21564.t1 |
| chr1.1 | CDS | 65795561 | 65795671 | 65795561 | ID=cds.MS.gene21564.t1;Parent=MS.gene21564.t1 |
| chr1.1 | exon | 65795363 | 65795406 | 65795363 | ID=MS.gene21564.t1.exon9;Parent=MS.gene21564.t1 |
| chr1.1 | CDS | 65795363 | 65795406 | 65795363 | ID=cds.MS.gene21564.t1;Parent=MS.gene21564.t1 |
| chr1.1 | exon | 65795180 | 65795282 | 65795180 | ID=MS.gene21564.t1.exon10;Parent=MS.gene21564.t1 |
| chr1.1 | CDS | 65795180 | 65795282 | 65795180 | ID=cds.MS.gene21564.t1;Parent=MS.gene21564.t1 |
| chr1.1 | exon | 65794544 | 65794637 | 65794544 | ID=MS.gene21564.t1.exon11;Parent=MS.gene21564.t1 |
| chr1.1 | CDS | 65794544 | 65794637 | 65794544 | ID=cds.MS.gene21564.t1;Parent=MS.gene21564.t1 |
| Gene Sequence |
| Protein sequence |
