Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40110.t1 | APD76301.1 | 99.8 | 525 | 1 | 0 | 1 | 525 | 1 | 525 | 3.80E-305 | 1056.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40110.t1 | O48651 | 78.2 | 523 | 104 | 3 | 4 | 525 | 26 | 539 | 5.6e-241 | 834.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40110.t1 | A0A1J0REM1 | 99.8 | 525 | 1 | 0 | 1 | 525 | 1 | 525 | 2.7e-305 | 1056.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene40110 | 0.8162 | 6.25E-52 | -1.69E-46 |
| MS.gene049217 | MS.gene40110 | 0.80929 | 2.04E-50 | -1.69E-46 |
| MS.gene049222 | MS.gene40110 | 0.841043 | 6.04E-58 | -1.69E-46 |
| MS.gene049232 | MS.gene40110 | 0.89124 | 4.76E-74 | -1.69E-46 |
| MS.gene049285 | MS.gene40110 | 0.829377 | 5.33E-55 | -1.69E-46 |
| MS.gene049320 | MS.gene40110 | 0.800419 | 1.45E-48 | -1.69E-46 |
| MS.gene049633 | MS.gene40110 | 0.853525 | 2.26E-61 | -1.69E-46 |
| MS.gene049656 | MS.gene40110 | 0.807819 | 4.20E-50 | -1.69E-46 |
| MS.gene049657 | MS.gene40110 | 0.823968 | 1.04E-53 | -1.69E-46 |
| MS.gene049865 | MS.gene40110 | 0.805068 | 1.60E-49 | -1.69E-46 |
| MS.gene05010 | MS.gene40110 | 0.841742 | 3.95E-58 | -1.69E-46 |
| MS.gene050170 | MS.gene40110 | 0.842569 | 2.39E-58 | -1.69E-46 |
| MS.gene050216 | MS.gene40110 | 0.844675 | 6.53E-59 | -1.69E-46 |
| MS.gene050323 | MS.gene40110 | 0.889664 | 1.98E-73 | -1.69E-46 |
| MS.gene050496 | MS.gene40110 | 0.845172 | 4.79E-59 | -1.69E-46 |
| MS.gene050499 | MS.gene40110 | 0.808994 | 2.36E-50 | -1.69E-46 |
| MS.gene050502 | MS.gene40110 | 0.802884 | 4.54E-49 | -1.69E-46 |
| MS.gene050504 | MS.gene40110 | 0.849435 | 3.24E-60 | -1.69E-46 |
| MS.gene050518 | MS.gene40110 | 0.841695 | 4.07E-58 | -1.69E-46 |
| MS.gene050577 | MS.gene40110 | 0.800265 | 1.56E-48 | -1.69E-46 |
| MS.gene050612 | MS.gene40110 | 0.823175 | 1.60E-53 | -1.69E-46 |
| MS.gene050662 | MS.gene40110 | 0.84308 | 1.75E-58 | -1.69E-46 |
| MS.gene050675 | MS.gene40110 | 0.814471 | 1.52E-51 | -1.69E-46 |
| MS.gene050692 | MS.gene40110 | 0.823417 | 1.40E-53 | -1.69E-46 |
| MS.gene050697 | MS.gene40110 | 0.818401 | 2.00E-52 | -1.69E-46 |
| MS.gene050747 | MS.gene40110 | 0.820389 | 7.04E-53 | -1.69E-46 |
| MS.gene050772 | MS.gene40110 | 0.803181 | 3.94E-49 | -1.69E-46 |
| MS.gene05080 | MS.gene40110 | 0.827026 | 1.96E-54 | -1.69E-46 |
| MS.gene050868 | MS.gene40110 | 0.873833 | 1.08E-67 | -1.69E-46 |
| MS.gene050871 | MS.gene40110 | 0.875383 | 3.22E-68 | -1.69E-46 |
| MS.gene050904 | MS.gene40110 | 0.816922 | 4.31E-52 | -1.69E-46 |
| MS.gene050950 | MS.gene40110 | 0.818417 | 1.98E-52 | -1.69E-46 |
| MS.gene050986 | MS.gene40110 | 0.823346 | 1.46E-53 | -1.69E-46 |
| MS.gene051268 | MS.gene40110 | 0.823901 | 1.08E-53 | -1.69E-46 |
| MS.gene051317 | MS.gene40110 | 0.827439 | 1.56E-54 | -1.69E-46 |
| MS.gene051509 | MS.gene40110 | 0.805986 | 1.02E-49 | -1.69E-46 |
| MS.gene051551 | MS.gene40110 | 0.822166 | 2.74E-53 | -1.69E-46 |
| MS.gene051734 | MS.gene40110 | 0.804034 | 2.62E-49 | -1.69E-46 |
| MS.gene051838 | MS.gene40110 | 0.80268 | 5.00E-49 | -1.69E-46 |
| MS.gene052066 | MS.gene40110 | 0.851621 | 7.88E-61 | -1.69E-46 |
| MS.gene052164 | MS.gene40110 | 0.822646 | 2.12E-53 | -1.69E-46 |
| MS.gene052482 | MS.gene40110 | 0.82259 | 2.18E-53 | -1.69E-46 |
| MS.gene052486 | MS.gene40110 | 0.833996 | 3.87E-56 | -1.69E-46 |
| MS.gene052506 | MS.gene40110 | 0.824623 | 7.30E-54 | -1.69E-46 |
| MS.gene052822 | MS.gene40110 | 0.821145 | 4.72E-53 | -1.69E-46 |
| MS.gene052966 | MS.gene40110 | 0.867588 | 1.22E-65 | -1.69E-46 |
| MS.gene053203 | MS.gene40110 | 0.850423 | 1.71E-60 | -1.69E-46 |
| MS.gene053286 | MS.gene40110 | 0.806228 | 9.11E-50 | -1.69E-46 |
| MS.gene053505 | MS.gene40110 | 0.806437 | 8.23E-50 | -1.69E-46 |
| MS.gene053574 | MS.gene40110 | 0.821586 | 3.73E-53 | -1.69E-46 |
| MS.gene053626 | MS.gene40110 | 0.830912 | 2.25E-55 | -1.69E-46 |
| MS.gene053633 | MS.gene40110 | 0.992048 | 5.27E-191 | -1.69E-46 |
| MS.gene053824 | MS.gene40110 | 0.834546 | 2.82E-56 | -1.69E-46 |
| MS.gene054003 | MS.gene40110 | 0.844306 | 8.20E-59 | -1.69E-46 |
| MS.gene054595 | MS.gene40110 | 0.86322 | 2.91E-64 | -1.69E-46 |
| MS.gene054954 | MS.gene40110 | 0.852902 | 3.40E-61 | -1.69E-46 |
| MS.gene055362 | MS.gene40110 | 0.800654 | 1.30E-48 | -1.69E-46 |
| MS.gene055502 | MS.gene40110 | 0.833438 | 5.33E-56 | -1.69E-46 |
| MS.gene055577 | MS.gene40110 | 0.840783 | 7.06E-58 | -1.69E-46 |
| MS.gene055722 | MS.gene40110 | 0.812301 | 4.54E-51 | -1.69E-46 |
| MS.gene055750 | MS.gene40110 | 0.817588 | 3.05E-52 | -1.69E-46 |
| MS.gene055751 | MS.gene40110 | 0.80385 | 2.86E-49 | -1.69E-46 |
| MS.gene055776 | MS.gene40110 | 0.813687 | 2.26E-51 | -1.69E-46 |
| MS.gene05589 | MS.gene40110 | 0.821877 | 3.20E-53 | -1.69E-46 |
| MS.gene055941 | MS.gene40110 | 0.812142 | 4.92E-51 | -1.69E-46 |
| MS.gene056046 | MS.gene40110 | 0.836742 | 7.83E-57 | -1.69E-46 |
| MS.gene056166 | MS.gene40110 | 0.847154 | 1.38E-59 | -1.69E-46 |
| MS.gene056387 | MS.gene40110 | 0.814437 | 1.54E-51 | -1.69E-46 |
| MS.gene056504 | MS.gene40110 | 0.870064 | 1.93E-66 | -1.69E-46 |
| MS.gene056510 | MS.gene40110 | 0.906752 | 1.06E-80 | -1.69E-46 |
| MS.gene056549 | MS.gene40110 | 0.811973 | 5.35E-51 | -1.69E-46 |
| MS.gene056657 | MS.gene40110 | 0.81879 | 1.63E-52 | -1.69E-46 |
| MS.gene056878 | MS.gene40110 | 0.810451 | 1.15E-50 | -1.69E-46 |
| MS.gene057086 | MS.gene40110 | 0.82574 | 3.98E-54 | -1.69E-46 |
| MS.gene057173 | MS.gene40110 | -0.80877 | 2.63E-50 | -1.69E-46 |
| MS.gene057687 | MS.gene40110 | 0.800263 | 1.56E-48 | -1.69E-46 |
| MS.gene057857 | MS.gene40110 | 0.802232 | 6.18E-49 | -1.69E-46 |
| MS.gene057872 | MS.gene40110 | 0.824743 | 6.84E-54 | -1.69E-46 |
| MS.gene05787 | MS.gene40110 | 0.823843 | 1.11E-53 | -1.69E-46 |
| MS.gene058157 | MS.gene40110 | 0.808418 | 3.13E-50 | -1.69E-46 |
| MS.gene058171 | MS.gene40110 | -0.801111 | 1.05E-48 | -1.69E-46 |
| MS.gene058173 | MS.gene40110 | -0.806402 | 8.37E-50 | -1.69E-46 |
| MS.gene058175 | MS.gene40110 | -0.806109 | 9.65E-50 | -1.69E-46 |
| MS.gene058183 | MS.gene40110 | 0.842235 | 2.93E-58 | -1.69E-46 |
| MS.gene05837 | MS.gene40110 | 0.82799 | 1.15E-54 | -1.69E-46 |
| MS.gene058419 | MS.gene40110 | 0.802515 | 5.41E-49 | -1.69E-46 |
| MS.gene058773 | MS.gene40110 | 0.822215 | 2.67E-53 | -1.69E-46 |
| MS.gene059022 | MS.gene40110 | 0.817207 | 3.72E-52 | -1.69E-46 |
| MS.gene059023 | MS.gene40110 | 0.810754 | 9.85E-51 | -1.69E-46 |
| MS.gene059034 | MS.gene40110 | 0.840148 | 1.04E-57 | -1.69E-46 |
| MS.gene05913 | MS.gene40110 | 0.814785 | 1.29E-51 | -1.69E-46 |
| MS.gene059305 | MS.gene40110 | 0.803601 | 3.23E-49 | -1.69E-46 |
| MS.gene059367 | MS.gene40110 | 0.833507 | 5.13E-56 | -1.69E-46 |
| MS.gene059680 | MS.gene40110 | 0.800487 | 1.41E-48 | -1.69E-46 |
| MS.gene059699 | MS.gene40110 | -0.808764 | 2.64E-50 | -1.69E-46 |
| MS.gene059703 | MS.gene40110 | -0.830732 | 2.49E-55 | -1.69E-46 |
| MS.gene059718 | MS.gene40110 | 0.815403 | 9.41E-52 | -1.69E-46 |
| MS.gene059801 | MS.gene40110 | 0.809051 | 2.29E-50 | -1.69E-46 |
| MS.gene059865 | MS.gene40110 | 0.865601 | 5.25E-65 | -1.69E-46 |
| MS.gene05995 | MS.gene40110 | 0.82155 | 3.80E-53 | -1.69E-46 |
| MS.gene05996 | MS.gene40110 | 0.825811 | 3.82E-54 | -1.69E-46 |
| MS.gene06000 | MS.gene40110 | 0.842044 | 3.29E-58 | -1.69E-46 |
| MS.gene060295 | MS.gene40110 | 0.832447 | 9.41E-56 | -1.69E-46 |
| MS.gene060339 | MS.gene40110 | 0.836473 | 9.17E-57 | -1.69E-46 |
| MS.gene060482 | MS.gene40110 | 0.868873 | 4.72E-66 | -1.69E-46 |
| MS.gene060595 | MS.gene40110 | -0.808662 | 2.77E-50 | -1.69E-46 |
| MS.gene060703 | MS.gene40110 | 0.829269 | 5.66E-55 | -1.69E-46 |
| MS.gene060762 | MS.gene40110 | 0.830524 | 2.80E-55 | -1.69E-46 |
| MS.gene060778 | MS.gene40110 | 0.844957 | 5.48E-59 | -1.69E-46 |
| MS.gene06077 | MS.gene40110 | 0.824871 | 6.38E-54 | -1.69E-46 |
| MS.gene060837 | MS.gene40110 | 0.80196 | 7.03E-49 | -1.69E-46 |
| MS.gene06097 | MS.gene40110 | 0.810708 | 1.01E-50 | -1.69E-46 |
| MS.gene060982 | MS.gene40110 | 0.871276 | 7.73E-67 | -1.69E-46 |
| MS.gene061134 | MS.gene40110 | 0.808106 | 3.64E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40110.t1 | MTR_4g092640 | 98.286 | 525 | 9 | 0 | 1 | 525 | 1 | 525 | 0.0 | 1056 |
| MS.gene40110.t1 | MTR_6g034955 | 79.135 | 532 | 99 | 4 | 1 | 525 | 1 | 527 | 0.0 | 850 |
| MS.gene40110.t1 | MTR_6g035065 | 79.017 | 529 | 99 | 4 | 1 | 522 | 1 | 524 | 0.0 | 842 |
| MS.gene40110.t1 | MTR_3g103510 | 85.193 | 466 | 68 | 1 | 58 | 523 | 53 | 517 | 0.0 | 829 |
| MS.gene40110.t1 | MTR_1g017270 | 78.394 | 523 | 109 | 4 | 5 | 525 | 4 | 524 | 0.0 | 805 |
| MS.gene40110.t1 | MTR_1g017270 | 77.914 | 489 | 104 | 4 | 5 | 491 | 4 | 490 | 0.0 | 744 |
| MS.gene40110.t1 | MTR_3g103510 | 86.207 | 348 | 47 | 1 | 176 | 523 | 17 | 363 | 0.0 | 623 |
| MS.gene40110.t1 | MTR_5g030880 | 91.765 | 85 | 7 | 0 | 400 | 484 | 187 | 271 | 1.14e-46 | 164 |
| MS.gene40110.t1 | MTR_7g064210 | 87.952 | 83 | 10 | 0 | 399 | 481 | 333 | 415 | 1.32e-40 | 152 |
| MS.gene40110.t1 | MTR_2g022940 | 98.571 | 70 | 1 | 0 | 399 | 468 | 168 | 237 | 1.07e-39 | 145 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40110.t1 | AT1G58440 | 77.624 | 505 | 106 | 4 | 21 | 523 | 24 | 523 | 0.0 | 805 |
| MS.gene40110.t1 | AT4G37760 | 74.563 | 515 | 120 | 2 | 6 | 520 | 11 | 514 | 0.0 | 768 |
| MS.gene40110.t1 | AT2G22830 | 73.077 | 520 | 130 | 5 | 4 | 523 | 76 | 585 | 0.0 | 752 |
| MS.gene40110.t1 | AT5G24150 | 51.335 | 487 | 233 | 3 | 37 | 520 | 23 | 508 | 3.22e-180 | 516 |
| MS.gene40110.t1 | AT5G24160 | 49.187 | 492 | 240 | 5 | 33 | 520 | 24 | 509 | 1.13e-171 | 495 |
| MS.gene40110.t1 | AT5G24150 | 51.288 | 466 | 223 | 3 | 37 | 499 | 23 | 487 | 8.94e-171 | 491 |
| MS.gene40110.t1 | AT5G24140 | 45.597 | 511 | 261 | 5 | 15 | 520 | 12 | 510 | 5.50e-161 | 468 |
| MS.gene40110.t1 | AT5G24160 | 48.499 | 433 | 218 | 4 | 92 | 520 | 1 | 432 | 8.03e-150 | 436 |
| MS.gene40110.t1 | AT5G24160 | 50.000 | 370 | 175 | 5 | 33 | 398 | 24 | 387 | 1.82e-127 | 377 |
| MS.gene40110.t1 | AT5G24155 | 68.421 | 57 | 18 | 0 | 61 | 117 | 49 | 105 | 1.61e-20 | 87.4 |
| MS.gene40110.t1 | AT5G24155 | 68.421 | 57 | 18 | 0 | 61 | 117 | 49 | 105 | 3.13e-20 | 87.0 |
| MS.gene40110.t1 | AT5G24155 | 68.421 | 57 | 18 | 0 | 61 | 117 | 49 | 105 | 3.91e-20 | 86.7 |
Find 115 sgRNAs with CRISPR-Local
Find 207 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATCATTACTTGAAGAAAA+TGG | 0.216396 | 4.3:+21455430 | MS.gene40110:CDS |
| CGAATCTCGGTACTACTTAT+AGG | 0.218539 | 4.3:-21455773 | None:intergenic |
| GTATATTCTAGGAGGGATTT+TGG | 0.223635 | 4.3:+21453782 | MS.gene40110:CDS |
| ACTTATAGGGTAAAACAAAA+TGG | 0.229140 | 4.3:-21455759 | None:intergenic |
| GTCATTCCTCCTCCTGTTAA+AGG | 0.240165 | 4.3:-21456214 | None:intergenic |
| ATAAAAGAAGCTTGCAGTTC+TGG | 0.264689 | 4.3:-21456079 | None:intergenic |
| TAATATGCTGGCACACTTGC+TGG | 0.295840 | 4.3:-21457289 | None:intergenic |
| GATGCAGGCATGCTTCTATT+TGG | 0.299001 | 4.3:-21456136 | None:intergenic |
| GTTTGGCTATGCACTTTATA+AGG | 0.306005 | 4.3:+21455167 | MS.gene40110:CDS |
| AATATGCGTCATCCTTTAAC+AGG | 0.308584 | 4.3:+21456202 | MS.gene40110:CDS |
| GCAAAGACATCATCAGAAAA+TGG | 0.314469 | 4.3:+21453897 | MS.gene40110:CDS |
| TTTATTGCAGCAGTTGATAA+AGG | 0.324523 | 4.3:+21456097 | MS.gene40110:CDS |
| GCTCCGATCCACATTCGTTT+TGG | 0.330287 | 4.3:-21456980 | None:intergenic |
| AAAACAACCATCACATACTA+TGG | 0.340829 | 4.3:-21455518 | None:intergenic |
| CACTCCTTCAGCCTTGATAA+TGG | 0.342933 | 4.3:-21457251 | None:intergenic |
| ACTCCTTCAGCCTTGATAAT+GGG | 0.353925 | 4.3:-21457250 | None:intergenic |
| TTCTTCGCAGTGGCTGTATA+TGG | 0.358668 | 4.3:+21456926 | MS.gene40110:CDS |
| GTGTTTGTTATGTATAGTTT+TGG | 0.359194 | 4.3:+21453822 | MS.gene40110:CDS |
| ATGGATTATCAGTATATTCT+AGG | 0.363275 | 4.3:+21453771 | MS.gene40110:CDS |
| TTTGGAGAAAAGAAGAAAAC+AGG | 0.363799 | 4.3:+21453840 | MS.gene40110:CDS |
| TTCTCTTGGTAATGGTGAAA+TGG | 0.372756 | 4.3:+21455832 | MS.gene40110:CDS |
| AAGTTTGACTCTGATGTATC+TGG | 0.380737 | 4.3:+21455225 | MS.gene40110:CDS |
| TATTTGAAGTTACTTGAGTT+GGG | 0.387474 | 4.3:+21454742 | MS.gene40110:CDS |
| ATTGTAGGTGCCGGAGTTGC+TGG | 0.396463 | 4.3:+21453960 | MS.gene40110:CDS |
| TTACTTGAGTTGGGTCTTGA+AGG | 0.404516 | 4.3:+21454751 | MS.gene40110:CDS |
| ATGATATTTCAGGGTGCATC+AGG | 0.407420 | 4.3:+21457217 | MS.gene40110:intron |
| AACTCACCCACAATTCTATC+AGG | 0.408803 | 4.3:-21454703 | None:intergenic |
| CTATTTGAAGTTACTTGAGT+TGG | 0.409758 | 4.3:+21454741 | MS.gene40110:CDS |
| GAATCTCGGTACTACTTATA+GGG | 0.411683 | 4.3:-21455772 | None:intergenic |
| TTCCAAGGGATAAGACAGTT+TGG | 0.414928 | 4.3:-21455202 | None:intergenic |
| GAAAACTGTGGTTGCTCCCC+AGG | 0.418914 | 4.3:+21455865 | MS.gene40110:CDS |
| GGCTATGCACTTTATAAGGA+TGG | 0.431044 | 4.3:+21455171 | MS.gene40110:CDS |
| ATTGATGCTCAAAGAGTGTT+TGG | 0.434501 | 4.3:+21455150 | MS.gene40110:CDS |
| AAATTACCTTCTCTTGGTAA+TGG | 0.436743 | 4.3:+21455824 | MS.gene40110:CDS |
| TAGTACCGAGATTCGCTGTT+TGG | 0.439202 | 4.3:+21455781 | MS.gene40110:CDS |
| CTTAGGAGATGTTAATGGAC+AGG | 0.441532 | 4.3:-21457322 | None:intergenic |
| AAATCATGGACATGTTATCT+TGG | 0.449608 | 4.3:+21455724 | MS.gene40110:CDS |
| GAAAACAGGTTCAAGTTCAA+TGG | 0.452744 | 4.3:+21453854 | MS.gene40110:CDS |
| TACCAAACTGTCTTATCCCT+TGG | 0.460598 | 4.3:+21455200 | MS.gene40110:CDS |
| TGTTTGGTTGATGTGCCTAC+TGG | 0.462828 | 4.3:+21455797 | MS.gene40110:CDS |
| ATTTGTTCACAAGAGGTTGT+TGG | 0.466336 | 4.3:+21453921 | MS.gene40110:CDS |
| CTTATAGGGTAAAACAAAAT+GGG | 0.467121 | 4.3:-21455758 | None:intergenic |
| GCATCACCTTATCCCACCCC+CGG | 0.468182 | 4.3:+21456154 | MS.gene40110:CDS |
| CTTGGAGGTGTTTGCTCAGA+CGG | 0.468969 | 4.3:+21456848 | MS.gene40110:CDS |
| CGGCGCATTTCAATGCTAGC+TGG | 0.470263 | 4.3:-21456803 | None:intergenic |
| ATTTCAATGCTAGCTGGATC+AGG | 0.470527 | 4.3:-21456797 | None:intergenic |
| ATCTCCCATCAGAAGAGCCC+CGG | 0.474937 | 4.3:-21456173 | None:intergenic |
| GAAACAGATATCATCATTGT+AGG | 0.477088 | 4.3:+21453945 | MS.gene40110:CDS |
| AGACCGGAGAGTAGAGCTAT+TGG | 0.479940 | 4.3:-21456872 | None:intergenic |
| CATACAGAGAATGCGAGAAA+AGG | 0.484631 | 4.3:+21455272 | MS.gene40110:CDS |
| TTTGATTATTTGAGCCTTGG+AGG | 0.486117 | 4.3:+21456833 | MS.gene40110:CDS |
| GCGTTCTCTTTGTAATCCTA+AGG | 0.502353 | 4.3:+21455552 | MS.gene40110:CDS |
| TCAATGGATGTGAAAAGTAA+TGG | 0.505232 | 4.3:+21453870 | MS.gene40110:CDS |
| GCTGCTCTTGCTTATACACT+TGG | 0.506736 | 4.3:+21453984 | MS.gene40110:CDS |
| ACTGAGCCTGATAGAATTGT+GGG | 0.511948 | 4.3:+21454697 | MS.gene40110:CDS |
| GCTATGCACTTTATAAGGAT+GGG | 0.512908 | 4.3:+21455172 | MS.gene40110:CDS |
| AATCTTCCACATGCAAATCA+TGG | 0.513553 | 4.3:+21455710 | MS.gene40110:CDS |
| AAATGTAGAACCAAGCTCAA+TGG | 0.516083 | 4.3:-21456905 | None:intergenic |
| TCTACAATAAACACATTAGC+AGG | 0.520455 | 4.3:+21456746 | MS.gene40110:CDS |
| AAGAGCAGCACCAGCAACTC+CGG | 0.522278 | 4.3:-21453970 | None:intergenic |
| TCTCCCATCAGAAGAGCCCC+GGG | 0.523212 | 4.3:-21456172 | None:intergenic |
| GAAGAAAATGGAACTATCAA+AGG | 0.527154 | 4.3:+21455442 | MS.gene40110:CDS |
| GGGGTGGGATAAGGTGATGC+AGG | 0.527706 | 4.3:-21456151 | None:intergenic |
| CGTCATCCTTTAACAGGAGG+AGG | 0.532176 | 4.3:+21456208 | MS.gene40110:CDS |
| GATATCATCATTGTAGGTGC+CGG | 0.533101 | 4.3:+21453951 | MS.gene40110:CDS |
| CTCCTTCAGCCTTGATAATG+GGG | 0.533319 | 4.3:-21457249 | None:intergenic |
| TAAAGGATGACGCATATTGA+AGG | 0.537263 | 4.3:-21456197 | None:intergenic |
| TTCCCCATTATCAAGGCTGA+AGG | 0.539446 | 4.3:+21457247 | MS.gene40110:CDS |
| CTTGTTTGTTGCAGGATGGA+CGG | 0.540600 | 4.3:+21454647 | MS.gene40110:intron |
| GAATCCGCGTCCATTGAGCT+TGG | 0.541714 | 4.3:+21456895 | MS.gene40110:CDS |
| AACTGAGCCTGATAGAATTG+TGG | 0.542024 | 4.3:+21454696 | MS.gene40110:CDS |
| GTGTTTATTGTAGATGCCAC+TGG | 0.545278 | 4.3:-21456737 | None:intergenic |
| AAATGGAATTTGTTCACAAG+AGG | 0.548076 | 4.3:+21453914 | MS.gene40110:CDS |
| TTCCTTCTCCAAAACGAATG+TGG | 0.549297 | 4.3:+21456972 | MS.gene40110:CDS |
| CCTCTCACCATAGTATGTGA+TGG | 0.552875 | 4.3:+21455511 | MS.gene40110:CDS |
| TTGAATTATTGCAGATTGTG+TGG | 0.554505 | 4.3:+21455122 | MS.gene40110:intron |
| TCAAATAATCAAAACAAGCT+CGG | 0.559243 | 4.3:-21456823 | None:intergenic |
| AATCATGGACATGTTATCTT+GGG | 0.559662 | 4.3:+21455725 | MS.gene40110:CDS |
| ACAAAGAGAACGCCTCAAGT+TGG | 0.560044 | 4.3:-21455542 | None:intergenic |
| GGAGGCATTCTGTAATATGC+TGG | 0.562084 | 4.3:-21457301 | None:intergenic |
| ATCAACCAAACAGCGAATCT+CGG | 0.564278 | 4.3:-21455786 | None:intergenic |
| GCAGTGGCTGTATATGGTGT+TGG | 0.566615 | 4.3:+21456932 | MS.gene40110:CDS |
| CAATGGACGCGGATTCAGAC+CGG | 0.575137 | 4.3:-21456888 | None:intergenic |
| GGTTCTACATTTCTTCGCAG+TGG | 0.580476 | 4.3:+21456916 | MS.gene40110:CDS |
| ATTTCACCATTACCAAGAGA+AGG | 0.583232 | 4.3:-21455830 | None:intergenic |
| TCTTGCTTATACACTTGGAA+AGG | 0.583251 | 4.3:+21453989 | MS.gene40110:CDS |
| AATCAATCCAACAAAATGAG+AGG | 0.583831 | 4.3:-21455675 | None:intergenic |
| GGGTAAAACAAAATGGGTGA+AGG | 0.590534 | 4.3:-21455752 | None:intergenic |
| ATCAATCCAACAAAATGAGA+GGG | 0.594183 | 4.3:-21455674 | None:intergenic |
| AGAACCAAGCTCAATGGACG+CGG | 0.596711 | 4.3:-21456899 | None:intergenic |
| AAAGAAGCTTGCAGTTCTGG+AGG | 0.598501 | 4.3:-21456076 | None:intergenic |
| CGTCTGAGCAAACACCTCCA+AGG | 0.602662 | 4.3:-21456847 | None:intergenic |
| ATTATCAGTATATTCTAGGA+GGG | 0.608177 | 4.3:+21453775 | MS.gene40110:CDS |
| GTGGGTGAGTTGCTACAACC+TGG | 0.608282 | 4.3:+21454715 | MS.gene40110:CDS |
| GATTATCAGTATATTCTAGG+AGG | 0.622192 | 4.3:+21453774 | MS.gene40110:CDS |
| TGCAGTGTTAAATTAGAACA+AGG | 0.622507 | 4.3:+21455400 | MS.gene40110:intron |
| TGGTCAAGAATTCACAGCAA+AGG | 0.624872 | 4.3:+21455486 | MS.gene40110:CDS |
| TCTCCAAAACGAATGTGGAT+CGG | 0.626029 | 4.3:+21456977 | MS.gene40110:CDS |
| GGCAAATTATTTGAAAACTG+TGG | 0.634271 | 4.3:+21455853 | MS.gene40110:CDS |
| GGACCAATAGCTCTACTCTC+CGG | 0.637723 | 4.3:+21456869 | MS.gene40110:CDS |
| GAGAAGGAAACGGTATCAAG+AGG | 0.638267 | 4.3:-21456958 | None:intergenic |
| CCATCACATACTATGGTGAG+AGG | 0.648098 | 4.3:-21455511 | None:intergenic |
| GTCGTTCTACACTCTACGCA+AGG | 0.648565 | 4.3:+21456327 | MS.gene40110:CDS |
| AGGAGATGTTAATGGACAGG+AGG | 0.652018 | 4.3:-21457319 | None:intergenic |
| ATGCGTCATCCTTTAACAGG+AGG | 0.657566 | 4.3:+21456205 | MS.gene40110:CDS |
| TCCCATCAGAAGAGCCCCGG+GGG | 0.663173 | 4.3:-21456170 | None:intergenic |
| AAGGAAACGGTATCAAGAGG+CGG | 0.664438 | 4.3:-21456955 | None:intergenic |
| AGTAACTTCAAATAGCCACC+AGG | 0.665041 | 4.3:-21454733 | None:intergenic |
| AACAATGTCAGACAAAGCCA+CGG | 0.666432 | 4.3:-21456236 | None:intergenic |
| GTAGAGTGTAGAACGACTCA+AGG | 0.674131 | 4.3:-21456321 | None:intergenic |
| ACATGTCCATGATTTGCATG+TGG | 0.682646 | 4.3:-21455716 | None:intergenic |
| GGTGAGTTGCTACAACCTGG+TGG | 0.691282 | 4.3:+21454718 | MS.gene40110:CDS |
| CTCCCATCAGAAGAGCCCCG+GGG | 0.708970 | 4.3:-21456171 | None:intergenic |
| GCATCATGCAGATTACGCAG+AGG | 0.710857 | 4.3:-21456280 | None:intergenic |
| AACAGGAGGAGGAATGACCG+TGG | 0.739407 | 4.3:+21456219 | MS.gene40110:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAGAATGAAAAAACTTA+AGG | + | chr4.3:21456628-21456647 | MS.gene40110:intron | 15.0% |
| !! | AATAGAATGAAAAAACTTAA+GGG | + | chr4.3:21456629-21456648 | MS.gene40110:intron | 15.0% |
| !! | AGTTCTATAAAATTATGTAT+AGG | + | chr4.3:21454444-21454463 | MS.gene40110:intron | 15.0% |
| !! | ATAATGTTCCATATATTAAA+GGG | - | chr4.3:21455004-21455023 | None:intergenic | 15.0% |
| !! | ATATTTAACCCTTTAATATA+TGG | + | chr4.3:21454993-21455012 | MS.gene40110:intron | 15.0% |
| !! | ATTCAATAAAACTTAATCAT+TGG | - | chr4.3:21455366-21455385 | None:intergenic | 15.0% |
| !! | TAAACATATATTTGTTTGTT+TGG | + | chr4.3:21457047-21457066 | MS.gene40110:intron | 15.0% |
| !! | TGTTATACAAAAAATTAACA+AGG | - | chr4.3:21454600-21454619 | None:intergenic | 15.0% |
| !!! | TAAGTTTTTTCATTCTATTT+TGG | - | chr4.3:21456628-21456647 | None:intergenic | 15.0% |
| !! | AAATATATGTTTAAGCACAT+AGG | - | chr4.3:21457040-21457059 | None:intergenic | 20.0% |
| !! | AAGCAAAACAATGATTAAAT+TGG | - | chr4.3:21454879-21454898 | None:intergenic | 20.0% |
| !! | AATATATGTTTAAGCACATA+GGG | - | chr4.3:21457039-21457058 | None:intergenic | 20.0% |
| !! | CAAATACAATTTACATACTT+TGG | - | chr4.3:21455309-21455328 | None:intergenic | 20.0% |
| !! | CATAATGTTCCATATATTAA+AGG | - | chr4.3:21455005-21455024 | None:intergenic | 20.0% |
| !! | GCATAAACTCAAAAAATAAA+AGG | - | chr4.3:21454030-21454049 | None:intergenic | 20.0% |
| !! | TTAAATTGATCATCTAAACA+AGG | - | chr4.3:21454184-21454203 | None:intergenic | 20.0% |
| !! | TTGAAGTATATATGTTTCTT+AGG | + | chr4.3:21455031-21455050 | MS.gene40110:intron | 20.0% |
| !!! | ATTCTCAATTTTTTTACCTT+AGG | - | chr4.3:21455571-21455590 | None:intergenic | 20.0% |
| !!! | TATTTTTCCATGATATTTCA+GGG | + | chr4.3:21457208-21457227 | MS.gene40110:intron | 20.0% |
| ! | ACATCATTACTTGAAGAAAA+TGG | + | chr4.3:21455430-21455449 | MS.gene40110:CDS | 25.0% |
| ! | ACTCAAGTATAAAACAGTTA+GGG | + | chr4.3:21456439-21456458 | MS.gene40110:intron | 25.0% |
| ! | ACTTATAGGGTAAAACAAAA+TGG | - | chr4.3:21455762-21455781 | None:intergenic | 25.0% |
| ! | ATATGTTCCAATGAAAAGAT+TGG | + | chr4.3:21454129-21454148 | MS.gene40110:intron | 25.0% |
| ! | ATATTGCTTCTACTAATTGT+GGG | + | chr4.3:21456036-21456055 | MS.gene40110:intron | 25.0% |
| ! | ATGCAATGACACTAATATAA+TGG | + | chr4.3:21456412-21456431 | MS.gene40110:intron | 25.0% |
| ! | CTTATAGGGTAAAACAAAAT+GGG | - | chr4.3:21455761-21455780 | None:intergenic | 25.0% |
| ! | GTTGTTAAGACTAATATCTT+AGG | + | chr4.3:21454158-21454177 | MS.gene40110:intron | 25.0% |
| ! | TAGATCTAATTTATTTGTGC+AGG | + | chr4.3:21455643-21455662 | MS.gene40110:intron | 25.0% |
| ! | TATGCATTTCATCAATATGA+TGG | + | chr4.3:21454045-21454064 | MS.gene40110:intron | 25.0% |
| ! | TCAAATAATCAAAACAAGCT+CGG | - | chr4.3:21456826-21456845 | None:intergenic | 25.0% |
| ! | TTAAATTGGACAATTTATGC+AGG | - | chr4.3:21454865-21454884 | None:intergenic | 25.0% |
| ! | TTTAATAGAGACTAAATGCA+GGG | + | chr4.3:21454897-21454916 | MS.gene40110:intron | 25.0% |
| !! | AGGTAGAATGTTCATTATTT+TGG | - | chr4.3:21455893-21455912 | None:intergenic | 25.0% |
| !! | ATGGATTATCAGTATATTCT+AGG | + | chr4.3:21453771-21453790 | MS.gene40110:CDS | 25.0% |
| !! | ATTATCAGTATATTCTAGGA+GGG | + | chr4.3:21453775-21453794 | MS.gene40110:CDS | 25.0% |
| !! | GTATTTTTCCATGATATTTC+AGG | + | chr4.3:21457207-21457226 | MS.gene40110:intron | 25.0% |
| !! | TATTTGAAGTTACTTGAGTT+GGG | + | chr4.3:21454742-21454761 | MS.gene40110:CDS | 25.0% |
| !! | TTCTATGTGATATCATGTTT+TGG | + | chr4.3:21456506-21456525 | MS.gene40110:intron | 25.0% |
| !!! | AATTTTCAAGTTTAATCCTG+CGG | - | chr4.3:21454865-21454846 | None:intergenic | 25.0% |
| !!! | CATATCTTGTTTTTATGTCT+TGG | + | chr4.3:21454534-21454553 | MS.gene40110:intron | 25.0% |
| !!! | GTGTTTGTTATGTATAGTTT+TGG | + | chr4.3:21453822-21453841 | MS.gene40110:CDS | 25.0% |
| !!! | TCATTTTGTTGGATTGATTT+TGG | + | chr4.3:21455679-21455698 | MS.gene40110:CDS | 25.0% |
| !!! | TGAAAATTCGTGAGTTTTAT+AGG | + | chr4.3:21454962-21454981 | MS.gene40110:intron | 25.0% |
| AAAAACTTAAGGGACTAAAG+TGG | + | chr4.3:21456639-21456658 | MS.gene40110:intron | 30.0% | |
| AAAACAACCATCACATACTA+TGG | - | chr4.3:21455521-21455540 | None:intergenic | 30.0% | |
| AAATCATGGACATGTTATCT+TGG | + | chr4.3:21455724-21455743 | MS.gene40110:CDS | 30.0% | |
| AAATTACCTTCTCTTGGTAA+TGG | + | chr4.3:21455824-21455843 | MS.gene40110:CDS | 30.0% | |
| AATCAATCCAACAAAATGAG+AGG | - | chr4.3:21455678-21455697 | None:intergenic | 30.0% | |
| AATCATGGACATGTTATCTT+GGG | + | chr4.3:21455725-21455744 | MS.gene40110:CDS | 30.0% | |
| ATCAATCCAACAAAATGAGA+GGG | - | chr4.3:21455677-21455696 | None:intergenic | 30.0% | |
| ATCACATAGAAAACATTTGC+CGG | - | chr4.3:21456497-21456516 | None:intergenic | 30.0% | |
| ATGAATGTGATAGAGAAACA+AGG | + | chr4.3:21454399-21454418 | MS.gene40110:intron | 30.0% | |
| ATTGTGGGAATTATATGTTC+AGG | + | chr4.3:21456051-21456070 | MS.gene40110:intron | 30.0% | |
| CATATGATTTGAGAATGACT+TGG | + | chr4.3:21454618-21454637 | MS.gene40110:intron | 30.0% | |
| CATATTGCTTCTACTAATTG+TGG | + | chr4.3:21456035-21456054 | MS.gene40110:intron | 30.0% | |
| CTTTAATAGAGACTAAATGC+AGG | + | chr4.3:21454896-21454915 | MS.gene40110:intron | 30.0% | |
| GAAACAGATATCATCATTGT+AGG | + | chr4.3:21453945-21453964 | MS.gene40110:CDS | 30.0% | |
| GAAGAAAATGGAACTATCAA+AGG | + | chr4.3:21455442-21455461 | MS.gene40110:CDS | 30.0% | |
| GACTCAAGTATAAAACAGTT+AGG | + | chr4.3:21456438-21456457 | MS.gene40110:intron | 30.0% | |
| GATTATCAGTATATTCTAGG+AGG | + | chr4.3:21453774-21453793 | MS.gene40110:CDS | 30.0% | |
| GGCAAATTATTTGAAAACTG+TGG | + | chr4.3:21455853-21455872 | MS.gene40110:CDS | 30.0% | |
| GGGATTACAATGACTAAAAT+TGG | + | chr4.3:21454917-21454936 | MS.gene40110:intron | 30.0% | |
| GTGAACTACAAAAATAAGAG+TGG | + | chr4.3:21455466-21455485 | MS.gene40110:CDS | 30.0% | |
| TCAATGGATGTGAAAAGTAA+TGG | + | chr4.3:21453870-21453889 | MS.gene40110:CDS | 30.0% | |
| TCTACAATAAACACATTAGC+AGG | + | chr4.3:21456746-21456765 | MS.gene40110:CDS | 30.0% | |
| TGAATGTGATAGAGAAACAA+GGG | + | chr4.3:21454400-21454419 | MS.gene40110:intron | 30.0% | |
| TGCAGTGTTAAATTAGAACA+AGG | + | chr4.3:21455400-21455419 | MS.gene40110:intron | 30.0% | |
| TTGAATTATTGCAGATTGTG+TGG | + | chr4.3:21455122-21455141 | MS.gene40110:intron | 30.0% | |
| TTTGGAGAAAAGAAGAAAAC+AGG | + | chr4.3:21453840-21453859 | MS.gene40110:CDS | 30.0% | |
| ! | AAATGGAATTTGTTCACAAG+AGG | + | chr4.3:21453914-21453933 | MS.gene40110:CDS | 30.0% |
| ! | CTATTTGAAGTTACTTGAGT+TGG | + | chr4.3:21454741-21454760 | MS.gene40110:CDS | 30.0% |
| ! | TACCAAGAGAAGGTAATTTT+TGG | - | chr4.3:21455823-21455842 | None:intergenic | 30.0% |
| ! | TATCATTTTCCCCATTATCA+AGG | + | chr4.3:21457240-21457259 | MS.gene40110:CDS | 30.0% |
| ! | TGCAAGAAAATATGTTTTCG+AGG | + | chr4.3:21454572-21454591 | MS.gene40110:intron | 30.0% |
| !! | AAACTTAATCATTGGTAGTG+TGG | - | chr4.3:21455358-21455377 | None:intergenic | 30.0% |
| !! | TATGTGATATCATGTTTTGG+TGG | + | chr4.3:21456509-21456528 | MS.gene40110:intron | 30.0% |
| !! | TTTATTGCAGCAGTTGATAA+AGG | + | chr4.3:21456097-21456116 | MS.gene40110:CDS | 30.0% |
| !!! | ATGTTCATTATTTTGGTACC+TGG | - | chr4.3:21455886-21455905 | None:intergenic | 30.0% |
| !!! | TGTTCATTATTTTGGTACCT+GGG | - | chr4.3:21455885-21455904 | None:intergenic | 30.0% |
| !!! | TGTTTTGATTATTTGAGCCT+TGG | + | chr4.3:21456830-21456849 | MS.gene40110:CDS | 30.0% |
| AAATGTAGAACCAAGCTCAA+TGG | - | chr4.3:21456908-21456927 | None:intergenic | 35.0% | |
| AACACTGCATTAATGCAAGA+AGG | - | chr4.3:21455389-21455408 | None:intergenic | 35.0% | |
| AAGTTTGACTCTGATGTATC+TGG | + | chr4.3:21455225-21455244 | MS.gene40110:CDS | 35.0% | |
| AATATGCGTCATCCTTTAAC+AGG | + | chr4.3:21456202-21456221 | MS.gene40110:CDS | 35.0% | |
| AATCTTCCACATGCAAATCA+TGG | + | chr4.3:21455710-21455729 | MS.gene40110:CDS | 35.0% | |
| ATAAAAGAAGCTTGCAGTTC+TGG | - | chr4.3:21456082-21456101 | None:intergenic | 35.0% | |
| ATTTCACCATTACCAAGAGA+AGG | - | chr4.3:21455833-21455852 | None:intergenic | 35.0% | |
| ATTTGTTCACAAGAGGTTGT+TGG | + | chr4.3:21453921-21453940 | MS.gene40110:CDS | 35.0% | |
| GAATCTCGGTACTACTTATA+GGG | - | chr4.3:21455775-21455794 | None:intergenic | 35.0% | |
| GCAAAGACATCATCAGAAAA+TGG | + | chr4.3:21453897-21453916 | MS.gene40110:CDS | 35.0% | |
| GCTATGCACTTTATAAGGAT+GGG | + | chr4.3:21455172-21455191 | MS.gene40110:CDS | 35.0% | |
| GTTTGGCTATGCACTTTATA+AGG | + | chr4.3:21455167-21455186 | MS.gene40110:CDS | 35.0% | |
| TAAAATTGGACAATTTCCGC+AGG | + | chr4.3:21454931-21454950 | MS.gene40110:intron | 35.0% | |
| TAAAGGATGACGCATATTGA+AGG | - | chr4.3:21456200-21456219 | None:intergenic | 35.0% | |
| TACTAGTATCTAGCATGAGT+AGG | - | chr4.3:21455913-21455932 | None:intergenic | 35.0% | |
| TCACATAGAAAACATTTGCC+GGG | - | chr4.3:21456496-21456515 | None:intergenic | 35.0% | |
| TCTTGCTTATACACTTGGAA+AGG | + | chr4.3:21453989-21454008 | MS.gene40110:CDS | 35.0% | |
| TTCTGCTGCTCAAATTCATA+TGG | + | chr4.3:21455080-21455099 | MS.gene40110:intron | 35.0% | |
| TTTCCTTCTTCTAACTGATC+CGG | - | chr4.3:21456542-21456561 | None:intergenic | 35.0% | |
| TTTGATTATTTGAGCCTTGG+AGG | + | chr4.3:21456833-21456852 | MS.gene40110:CDS | 35.0% | |
| ! | ATCAGAGTCAAACTTTTCCA+AGG | - | chr4.3:21455220-21455239 | None:intergenic | 35.0% |
| ! | CATGACACCAATCTTTTCAT+TGG | - | chr4.3:21454139-21454158 | None:intergenic | 35.0% |
| ! | GAAAACAGGTTCAAGTTCAA+TGG | + | chr4.3:21453854-21453873 | MS.gene40110:CDS | 35.0% |
| ! | TCAGAGTCAAACTTTTCCAA+GGG | - | chr4.3:21455219-21455238 | None:intergenic | 35.0% |
| ! | TCTGGAAGAAGTTTTCACAA+TGG | + | chr4.3:21455243-21455262 | MS.gene40110:CDS | 35.0% |
| !! | ATTGATGCTCAAAGAGTGTT+TGG | + | chr4.3:21455150-21455169 | MS.gene40110:CDS | 35.0% |
| !! | GATTTGTAGTGTTGCTTAAC+AGG | + | chr4.3:21455620-21455639 | MS.gene40110:intron | 35.0% |
| !! | GCTGTTTTCATAAGCTATCT+TGG | + | chr4.3:21454256-21454275 | MS.gene40110:intron | 35.0% |
| !! | GTATATTCTAGGAGGGATTT+TGG | + | chr4.3:21453782-21453801 | MS.gene40110:CDS | 35.0% |
| !! | TGTCTGACATTGTTTTGCTA+AGG | + | chr4.3:21456245-21456264 | MS.gene40110:CDS | 35.0% |
| !! | TTCTCTTGGTAATGGTGAAA+TGG | + | chr4.3:21455832-21455851 | MS.gene40110:CDS | 35.0% |
| !!! | AGGGATTTTGGCTTTTAGTT+TGG | + | chr4.3:21453794-21453813 | MS.gene40110:CDS | 35.0% |
| !!! | ATGGTTGTTTTTCCAACTTG+AGG | + | chr4.3:21455530-21455549 | MS.gene40110:CDS | 35.0% |
| !!! | ATTCGTTTTGGAGAAGGAAA+CGG | - | chr4.3:21456971-21456990 | None:intergenic | 35.0% |
| !!! | GTTCATTATTTTGGTACCTG+GGG | - | chr4.3:21455884-21455903 | None:intergenic | 35.0% |
| AACAATGTCAGACAAAGCCA+CGG | - | chr4.3:21456239-21456258 | None:intergenic | 40.0% | |
| AACTCACCCACAATTCTATC+AGG | - | chr4.3:21454706-21454725 | None:intergenic | 40.0% | |
| AACTGAGCCTGATAGAATTG+TGG | + | chr4.3:21454696-21454715 | MS.gene40110:CDS | 40.0% | |
| ACTGAGCCTGATAGAATTGT+GGG | + | chr4.3:21454697-21454716 | MS.gene40110:CDS | 40.0% | |
| AGTAACTTCAAATAGCCACC+AGG | - | chr4.3:21454736-21454755 | None:intergenic | 40.0% | |
| ATCAACCAAACAGCGAATCT+CGG | - | chr4.3:21455789-21455808 | None:intergenic | 40.0% | |
| ATGATATTTCAGGGTGCATC+AGG | + | chr4.3:21457217-21457236 | MS.gene40110:intron | 40.0% | |
| ATTTCAATGCTAGCTGGATC+AGG | - | chr4.3:21456800-21456819 | None:intergenic | 40.0% | |
| CATACAGAGAATGCGAGAAA+AGG | + | chr4.3:21455272-21455291 | MS.gene40110:CDS | 40.0% | |
| CGAATCTCGGTACTACTTAT+AGG | - | chr4.3:21455776-21455795 | None:intergenic | 40.0% | |
| GATATCATCATTGTAGGTGC+CGG | + | chr4.3:21453951-21453970 | MS.gene40110:CDS | 40.0% | |
| GCGTTCTCTTTGTAATCCTA+AGG | + | chr4.3:21455552-21455571 | MS.gene40110:CDS | 40.0% | |
| GGCCAAAAATTACCTTCTCT+TGG | + | chr4.3:21455818-21455837 | MS.gene40110:CDS | 40.0% | |
| GGCTATGCACTTTATAAGGA+TGG | + | chr4.3:21455171-21455190 | MS.gene40110:CDS | 40.0% | |
| GGGTAAAACAAAATGGGTGA+AGG | - | chr4.3:21455755-21455774 | None:intergenic | 40.0% | |
| GTGTTTATTGTAGATGCCAC+TGG | - | chr4.3:21456740-21456759 | None:intergenic | 40.0% | |
| TACCAAACTGTCTTATCCCT+TGG | + | chr4.3:21455200-21455219 | MS.gene40110:CDS | 40.0% | |
| TCTCCAAAACGAATGTGGAT+CGG | + | chr4.3:21456977-21456996 | MS.gene40110:CDS | 40.0% | |
| TGAATTTGAGCAGCAGAATC+AGG | - | chr4.3:21455078-21455097 | None:intergenic | 40.0% | |
| TGATGCACCCTGAAATATCA+TGG | - | chr4.3:21457218-21457237 | None:intergenic | 40.0% | |
| TGGTCAAGAATTCACAGCAA+AGG | + | chr4.3:21455486-21455505 | MS.gene40110:CDS | 40.0% | |
| TTCCAAGGGATAAGACAGTT+TGG | - | chr4.3:21455205-21455224 | None:intergenic | 40.0% | |
| TTCCTTCTCCAAAACGAATG+TGG | + | chr4.3:21456972-21456991 | MS.gene40110:CDS | 40.0% | |
| TTGATTCTATTTGCAGCCAG+TGG | + | chr4.3:21456721-21456740 | MS.gene40110:intron | 40.0% | |
| ! | ACATGTCCATGATTTGCATG+TGG | - | chr4.3:21455719-21455738 | None:intergenic | 40.0% |
| ! | ACTCCTTCAGCCTTGATAAT+GGG | - | chr4.3:21457253-21457272 | None:intergenic | 40.0% |
| ! | GAAGTTCCCTCTCATTTTGT+TGG | + | chr4.3:21455668-21455687 | MS.gene40110:CDS | 40.0% |
| !! | TCGAGTAAGTGCTGATGTAT+AGG | + | chr4.3:21457098-21457117 | MS.gene40110:intron | 40.0% |
| !! | TTACTTGAGTTGGGTCTTGA+AGG | + | chr4.3:21454751-21454770 | MS.gene40110:CDS | 40.0% |
| !!! | ATCCACATTCGTTTTGGAGA+AGG | - | chr4.3:21456977-21456996 | None:intergenic | 40.0% |
| !!! | ATGTTTTGGTGGTTAGATGC+CGG | + | chr4.3:21456520-21456539 | MS.gene40110:intron | 40.0% |
| !!! | GAAGGTAATTTTTGGCCAGT+AGG | - | chr4.3:21455815-21455834 | None:intergenic | 40.0% |
| AAACATTTGCCGGGCTCATA+CGG | - | chr4.3:21456487-21456506 | None:intergenic | 45.0% | |
| AAGGAAACGGTATCAAGAGG+CGG | - | chr4.3:21456958-21456977 | None:intergenic | 45.0% | |
| ACAAAGAGAACGCCTCAAGT+TGG | - | chr4.3:21455545-21455564 | None:intergenic | 45.0% | |
| ATGCCGGATCAGTTAGAAGA+AGG | + | chr4.3:21456536-21456555 | MS.gene40110:intron | 45.0% | |
| ATGCGTCATCCTTTAACAGG+AGG | + | chr4.3:21456205-21456224 | MS.gene40110:CDS | 45.0% | |
| CACTCCTTCAGCCTTGATAA+TGG | - | chr4.3:21457254-21457273 | None:intergenic | 45.0% | |
| CCATCACATACTATGGTGAG+AGG | - | chr4.3:21455514-21455533 | None:intergenic | 45.0% | |
| CCTCTCACCATAGTATGTGA+TGG | + | chr4.3:21455511-21455530 | MS.gene40110:CDS | 45.0% | |
| GAGAAGGAAACGGTATCAAG+AGG | - | chr4.3:21456961-21456980 | None:intergenic | 45.0% | |
| GATGCAGGCATGCTTCTATT+TGG | - | chr4.3:21456139-21456158 | None:intergenic | 45.0% | |
| GCTGCTCTTGCTTATACACT+TGG | + | chr4.3:21453984-21454003 | MS.gene40110:CDS | 45.0% | |
| GGTTCTACATTTCTTCGCAG+TGG | + | chr4.3:21456916-21456935 | MS.gene40110:CDS | 45.0% | |
| GTAGAGTGTAGAACGACTCA+AGG | - | chr4.3:21456324-21456343 | None:intergenic | 45.0% | |
| GTCATTCCTCCTCCTGTTAA+AGG | - | chr4.3:21456217-21456236 | None:intergenic | 45.0% | |
| TAATATGCTGGCACACTTGC+TGG | - | chr4.3:21457292-21457311 | None:intergenic | 45.0% | |
| TTCCCCATTATCAAGGCTGA+AGG | + | chr4.3:21457247-21457266 | MS.gene40110:CDS | 45.0% | |
| TTCTTCGCAGTGGCTGTATA+TGG | + | chr4.3:21456926-21456945 | MS.gene40110:CDS | 45.0% | |
| ! | AAAGAAGCTTGCAGTTCTGG+AGG | - | chr4.3:21456079-21456098 | None:intergenic | 45.0% |
| ! | CATTGTTTTCCGTATGAGCC+CGG | + | chr4.3:21456475-21456494 | MS.gene40110:intron | 45.0% |
| ! | CTTGTTTGTTGCAGGATGGA+CGG | + | chr4.3:21454647-21454666 | MS.gene40110:intron | 45.0% |
| ! | GGATTGTGCTTGTTTGTTGC+AGG | + | chr4.3:21454639-21454658 | MS.gene40110:intron | 45.0% |
| ! | TAGTACCGAGATTCGCTGTT+TGG | + | chr4.3:21455781-21455800 | MS.gene40110:CDS | 45.0% |
| ! | TGTGCTTGTTTGTTGCAGGA+TGG | + | chr4.3:21454643-21454662 | MS.gene40110:intron | 45.0% |
| ! | TGTTTGGTTGATGTGCCTAC+TGG | + | chr4.3:21455797-21455816 | MS.gene40110:CDS | 45.0% |
| !! | CTCCTTCAGCCTTGATAATG+GGG | - | chr4.3:21457252-21457271 | None:intergenic | 45.0% |
| !! | GGAGGCATTCTGTAATATGC+TGG | - | chr4.3:21457304-21457323 | None:intergenic | 45.0% |
| AGAACCAAGCTCAATGGACG+CGG | - | chr4.3:21456902-21456921 | None:intergenic | 50.0% | |
| AGACCGGAGAGTAGAGCTAT+TGG | - | chr4.3:21456875-21456894 | None:intergenic | 50.0% | |
| CGGGCTCATACGGAAAACAA+TGG | - | chr4.3:21456477-21456496 | None:intergenic | 50.0% | |
| CGTCATCCTTTAACAGGAGG+AGG | + | chr4.3:21456208-21456227 | MS.gene40110:CDS | 50.0% | |
| GCAGTGGCTGTATATGGTGT+TGG | + | chr4.3:21456932-21456951 | MS.gene40110:CDS | 50.0% | |
| GCATCATGCAGATTACGCAG+AGG | - | chr4.3:21456283-21456302 | None:intergenic | 50.0% | |
| GTCGTTCTACACTCTACGCA+AGG | + | chr4.3:21456327-21456346 | MS.gene40110:CDS | 50.0% | |
| ! | GCTCCGATCCACATTCGTTT+TGG | - | chr4.3:21456983-21457002 | None:intergenic | 50.0% |
| ! | GGACCAATAGCTCTACTCTC+CGG | + | chr4.3:21456869-21456888 | MS.gene40110:CDS | 50.0% |
| !! | CTTGGAGGTGTTTGCTCAGA+CGG | + | chr4.3:21456848-21456867 | MS.gene40110:CDS | 50.0% |
| !! | GATGAGCACTTGTTGTGCGA+CGG | - | chr4.3:21454316-21454335 | None:intergenic | 50.0% |
| AACAGGAGGAGGAATGACCG+TGG | + | chr4.3:21456219-21456238 | MS.gene40110:CDS | 55.0% | |
| AAGAGCAGCACCAGCAACTC+CGG | - | chr4.3:21453973-21453992 | None:intergenic | 55.0% | |
| ATCTCCCATCAGAAGAGCCC+CGG | - | chr4.3:21456176-21456195 | None:intergenic | 55.0% | |
| CAATGGACGCGGATTCAGAC+CGG | - | chr4.3:21456891-21456910 | None:intergenic | 55.0% | |
| CGGCGCATTTCAATGCTAGC+TGG | - | chr4.3:21456806-21456825 | None:intergenic | 55.0% | |
| CGTCTGAGCAAACACCTCCA+AGG | - | chr4.3:21456850-21456869 | None:intergenic | 55.0% | |
| GAAAACTGTGGTTGCTCCCC+AGG | + | chr4.3:21455865-21455884 | MS.gene40110:CDS | 55.0% | |
| GAATCCGCGTCCATTGAGCT+TGG | + | chr4.3:21456895-21456914 | MS.gene40110:CDS | 55.0% | |
| GGTGAGTTGCTACAACCTGG+TGG | + | chr4.3:21454718-21454737 | MS.gene40110:CDS | 55.0% | |
| GTGGGTGAGTTGCTACAACC+TGG | + | chr4.3:21454715-21454734 | MS.gene40110:CDS | 55.0% | |
| !! | ATTGTAGGTGCCGGAGTTGC+TGG | + | chr4.3:21453960-21453979 | MS.gene40110:CDS | 55.0% |
| ATCACCTTATCCCACCCCCG+GGG | + | chr4.3:21456156-21456175 | MS.gene40110:CDS | 60.0% | |
| CATCACCTTATCCCACCCCC+GGG | + | chr4.3:21456155-21456174 | MS.gene40110:CDS | 60.0% | |
| GCATCACCTTATCCCACCCC+CGG | + | chr4.3:21456154-21456173 | MS.gene40110:CDS | 60.0% | |
| GGGGTGGGATAAGGTGATGC+AGG | - | chr4.3:21456154-21456173 | None:intergenic | 60.0% | |
| TCTCCCATCAGAAGAGCCCC+GGG | - | chr4.3:21456175-21456194 | None:intergenic | 60.0% | |
| ACCCCCGGGGCTCTTCTGAT+GGG | + | chr4.3:21456169-21456188 | MS.gene40110:CDS | 65.0% | |
| ATCAGAAGAGCCCCGGGGGT+GGG | - | chr4.3:21456169-21456188 | None:intergenic | 65.0% | |
| CTCCCATCAGAAGAGCCCCG+GGG | - | chr4.3:21456174-21456193 | None:intergenic | 65.0% | |
| TCCCATCAGAAGAGCCCCGG+GGG | - | chr4.3:21456173-21456192 | None:intergenic | 65.0% | |
| AGAGCCCCGGGGGTGGGATA+AGG | - | chr4.3:21456163-21456182 | None:intergenic | 70.0% | |
| CACCCCCGGGGCTCTTCTGA+TGG | + | chr4.3:21456168-21456187 | MS.gene40110:CDS | 70.0% | |
| CATCAGAAGAGCCCCGGGGG+TGG | - | chr4.3:21456170-21456189 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 21453771 | 21457333 | 21453771 | ID=MS.gene40110 |
| chr4.3 | mRNA | 21453771 | 21457333 | 21453771 | ID=MS.gene40110.t1;Parent=MS.gene40110 |
| chr4.3 | exon | 21453771 | 21454010 | 21453771 | ID=MS.gene40110.t1.exon1;Parent=MS.gene40110.t1 |
| chr4.3 | CDS | 21453771 | 21454010 | 21453771 | ID=cds.MS.gene40110.t1;Parent=MS.gene40110.t1 |
| chr4.3 | exon | 21454661 | 21454772 | 21454661 | ID=MS.gene40110.t1.exon2;Parent=MS.gene40110.t1 |
| chr4.3 | CDS | 21454661 | 21454772 | 21454661 | ID=cds.MS.gene40110.t1;Parent=MS.gene40110.t1 |
| chr4.3 | exon | 21455136 | 21455310 | 21455136 | ID=MS.gene40110.t1.exon3;Parent=MS.gene40110.t1 |
| chr4.3 | CDS | 21455136 | 21455310 | 21455136 | ID=cds.MS.gene40110.t1;Parent=MS.gene40110.t1 |
| chr4.3 | exon | 21455405 | 21455573 | 21455405 | ID=MS.gene40110.t1.exon4;Parent=MS.gene40110.t1 |
| chr4.3 | CDS | 21455405 | 21455573 | 21455405 | ID=cds.MS.gene40110.t1;Parent=MS.gene40110.t1 |
| chr4.3 | exon | 21455665 | 21455886 | 21455665 | ID=MS.gene40110.t1.exon5;Parent=MS.gene40110.t1 |
| chr4.3 | CDS | 21455665 | 21455886 | 21455665 | ID=cds.MS.gene40110.t1;Parent=MS.gene40110.t1 |
| chr4.3 | exon | 21456073 | 21456348 | 21456073 | ID=MS.gene40110.t1.exon6;Parent=MS.gene40110.t1 |
| chr4.3 | CDS | 21456073 | 21456348 | 21456073 | ID=cds.MS.gene40110.t1;Parent=MS.gene40110.t1 |
| chr4.3 | exon | 21456737 | 21457015 | 21456737 | ID=MS.gene40110.t1.exon7;Parent=MS.gene40110.t1 |
| chr4.3 | CDS | 21456737 | 21457015 | 21456737 | ID=cds.MS.gene40110.t1;Parent=MS.gene40110.t1 |
| chr4.3 | exon | 21457229 | 21457333 | 21457229 | ID=MS.gene40110.t1.exon8;Parent=MS.gene40110.t1 |
| chr4.3 | CDS | 21457229 | 21457333 | 21457229 | ID=cds.MS.gene40110.t1;Parent=MS.gene40110.t1 |
| Gene Sequence |
| Protein sequence |
