AlfalfaGEDB | MS.gene40781

M. sativa cultivar XinJiangDaYe / MS.gene40781

KEGG: -
GO: GO:0000041 GO:0003674 GO:0005215 GO:0005381 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0016021 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0034220 GO:0034755 GO:0046873 GO:0046915 GO:0051179 GO:0051234 GO:0055085 GO:0098655 GO:0098660 GO:0098662 GO:0110165
PFAM: PF06963.15

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene40781.t1	XP_013469071.1	96.1	590	17	3	1	587	1	587	0.00E+00	1076.6

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene40781.t1	Q8W4E7	64.2	592	202	5	1	585	7	595	3.6e-196	686.0

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene40781.t1	A0A072VM68	96.1	590	17	3	1	587	1	587	0.0e+00	1076.6

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene40781	0.827218	1.77E-54	-1.69E-46
MS.gene049171	MS.gene40781	0.815438	9.24E-52	-1.69E-46
MS.gene049222	MS.gene40781	0.830025	3.70E-55	-1.69E-46
MS.gene049257	MS.gene40781	0.830373	3.05E-55	-1.69E-46
MS.gene049369	MS.gene40781	0.805046	1.61E-49	-1.69E-46
MS.gene049427	MS.gene40781	0.815875	7.39E-52	-1.69E-46
MS.gene049609	MS.gene40781	0.844911	5.64E-59	-1.69E-46
MS.gene049633	MS.gene40781	0.823724	1.19E-53	-1.69E-46
MS.gene049805	MS.gene40781	0.816368	5.73E-52	-1.69E-46
MS.gene050170	MS.gene40781	0.803298	3.73E-49	-1.69E-46

Showing 1 to 10 of 136 entries

Previous1 2 3 4 5…14Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene40781.t1	MTR_1g084140	96.102	590	17	3	1	587	1	587	0.0	1136
MS.gene40781.t1	MTR_4g013240	25.159	473	286	15	141	567	30	480	8.57e-23	102
MS.gene40781.t1	MTR_4g013245	23.990	421	268	13	162	545	11	416	4.37e-13	72.4

Showing 1 to 3 of 3 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene40781.t1	AT5G26820	64.189	592	202	5	1	585	7	595	0.0	728
MS.gene40781.t1	AT5G03570	23.819	487	318	13	114	559	5	479	2.49e-19	92.0
MS.gene40781.t1	AT5G03570	23.819	487	318	13	114	559	5	479	2.49e-19	92.0
MS.gene40781.t1	AT5G03570	24.083	436	282	10	156	559	16	434	2.57e-18	88.6
MS.gene40781.t1	AT5G03570	22.461	512	320	13	114	559	5	505	1.28e-16	83.6

Showing 1 to 5 of 5 entries

Previous1Next

Find 129 sgRNAs with CRISPR-Local

Find 333 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCAGTTGTTAAGGGTC+TGG	0.491610	1.2:+59380763	MS.gene40781:intron
AAAGTGGCTATAATTGTTGG+TGG	0.593039	1.2:+59379638	MS.gene40781:CDS
AAATGGATGAGATTAAAGGA+GGG	0.610645	1.2:-59378372	None:intergenic
AACAGAGAACTTACTGTAAC+AGG	0.338783	1.2:-59380464	None:intergenic
AACATTCGTGTCTTCGACTC+TGG	0.414974	1.2:+59381265	MS.gene40781:CDS
AACGAATACTGATATACAAT+TGG	0.400757	1.2:+59378606	MS.gene40781:CDS
AACGCCGGTAGAAAGCTTGT+TGG	0.538024	1.2:-59380590	None:intergenic
AAGAAACCCACCACAGCAAC+TGG	0.408080	1.2:-59379611	None:intergenic
AAGAAGGAGGAATGGTGAAA+TGG	0.466110	1.2:-59378389	None:intergenic
AAGCCTCTTGCCAGTTGCTG+TGG	0.527013	1.2:+59379601	MS.gene40781:CDS

Showing 1 to 10 of 129 entries

Previous1 2 3 4 5…13Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAATACAAAGTTATGGGACA+AGG	+	chr1.2:59381971-59381990	MS.gene40781:intron	30.0%
AAATGCTGAAAATCTTACGT+TGG	+	chr1.2:59379258-59379277	MS.gene40781:intron	30.0%
AAATGGATGAGATTAAAGGA+GGG	-	chr1.2:59378375-59378394	None:intergenic	30.0%
AACAATCCATATCACCATTT+AGG	-	chr1.2:59382545-59382564	None:intergenic	30.0%
AATCAATACTGATATTCTGG+TGG	+	chr1.2:59378705-59378724	MS.gene40781:CDS	30.0%
AATTTGTGAGTTTCAAAGTC+AGG	-	chr1.2:59380339-59380358	None:intergenic	30.0%
ACAGTTAAGTAGTTATATGC+AGG	-	chr1.2:59379704-59379723	None:intergenic	30.0%
ACTAAAGTGGCTATAATTGT+TGG	+	chr1.2:59379635-59379654	MS.gene40781:CDS	30.0%
ACTGAGGATGATAAGAAAAA+AGG	-	chr1.2:59383188-59383207	None:intergenic	30.0%
ACTTCTTTCAAGCTTCAAAT+AGG	+	chr1.2:59382171-59382190	MS.gene40781:intron	30.0%

Showing 1 to 10 of 333 entries

Previous1 2 3 4 5…34Next

Chromosome	Type	Strat	End	Strand	Name
chr1.2	gene	59378357	59383212	59378357	ID=MS.gene40781
chr1.2	mRNA	59378357	59383212	59378357	ID=MS.gene40781.t1;Parent=MS.gene40781
chr1.2	exon	59378357	59378490	59378357	ID=MS.gene40781.t1.exon1;Parent=MS.gene40781.t1
chr1.2	CDS	59378357	59378490	59378357	ID=cds.MS.gene40781.t1;Parent=MS.gene40781.t1
chr1.2	exon	59378576	59378792	59378576	ID=MS.gene40781.t1.exon2;Parent=MS.gene40781.t1
chr1.2	CDS	59378576	59378792	59378576	ID=cds.MS.gene40781.t1;Parent=MS.gene40781.t1
chr1.2	exon	59378876	59378939	59378876	ID=MS.gene40781.t1.exon3;Parent=MS.gene40781.t1
chr1.2	CDS	59378876	59378939	59378876	ID=cds.MS.gene40781.t1;Parent=MS.gene40781.t1
chr1.2	exon	59379516	59379730	59379516	ID=MS.gene40781.t1.exon4;Parent=MS.gene40781.t1
chr1.2	CDS	59379516	59379730	59379516	ID=cds.MS.gene40781.t1;Parent=MS.gene40781.t1
chr1.2	exon	59379807	59379983	59379807	ID=MS.gene40781.t1.exon5;Parent=MS.gene40781.t1
chr1.2	CDS	59379807	59379983	59379807	ID=cds.MS.gene40781.t1;Parent=MS.gene40781.t1
chr1.2	exon	59380075	59380149	59380075	ID=MS.gene40781.t1.exon6;Parent=MS.gene40781.t1
chr1.2	CDS	59380075	59380149	59380075	ID=cds.MS.gene40781.t1;Parent=MS.gene40781.t1
chr1.2	exon	59380371	59380472	59380371	ID=MS.gene40781.t1.exon7;Parent=MS.gene40781.t1
chr1.2	CDS	59380371	59380472	59380371	ID=cds.MS.gene40781.t1;Parent=MS.gene40781.t1
chr1.2	exon	59380571	59380688	59380571	ID=MS.gene40781.t1.exon8;Parent=MS.gene40781.t1
chr1.2	CDS	59380571	59380688	59380571	ID=cds.MS.gene40781.t1;Parent=MS.gene40781.t1
chr1.2	exon	59380771	59380917	59380771	ID=MS.gene40781.t1.exon9;Parent=MS.gene40781.t1
chr1.2	CDS	59380771	59380917	59380771	ID=cds.MS.gene40781.t1;Parent=MS.gene40781.t1
chr1.2	exon	59381204	59381310	59381204	ID=MS.gene40781.t1.exon10;Parent=MS.gene40781.t1
chr1.2	CDS	59381204	59381310	59381204	ID=cds.MS.gene40781.t1;Parent=MS.gene40781.t1
chr1.2	exon	59381412	59381525	59381412	ID=MS.gene40781.t1.exon11;Parent=MS.gene40781.t1
chr1.2	CDS	59381412	59381525	59381412	ID=cds.MS.gene40781.t1;Parent=MS.gene40781.t1
chr1.2	exon	59382919	59383212	59382919	ID=MS.gene40781.t1.exon12;Parent=MS.gene40781.t1
chr1.2	CDS	59382919	59383212	59382919	ID=cds.MS.gene40781.t1;Parent=MS.gene40781.t1

Gene Sequence

>MS.gene40781

ATGGTTATTGCTTCGCCCTCCTTTAATCTCATCCATTTCACCATTCCTCCTTCTTTCTCGCATCGACCTTCTTCGAGATTACGCTATCGCTGTAAACGATTAAACCTCAATTACTATCCTTCTATCACTCAGAGGTATTATTATTTTTTTTTTTTTTGTTTTGTGTTTCACCATTTATATAAGTTCGAATTTCTGTTACTGAATTGTTTTTGTTTACAGATTTGCTTGTATAAGTTCGAGATGTTCAATAACGAATACTGATATACAATTGGAATTGGATCATGTTAATGAGGATAAGAGTGAAGGAACGTGTTCAATTGTTGAACAAGAATGTCCTGTGCCGATTAAAATCAATACTGATATTCTGGTGGAGAATGATTCTTTGAATTTACTCTCTGAAACCGCCTTTGTAGATACTGTCTTGACATCCTTGCCTGTAGGTTGTTTTTTCATAGGTTTAGGTTTTGTTAACAATTGTTTCATTGTTTCTTATCTTTTTATGGTTTGTTATGTATGTAGGTTTTGTCTGAAGAGGAACAACATGTTCTTGCAGCTACTCCGGCACACCCTGCTGGGTTATATGGTGGGATGTTTTTCATTTTCAACCTTAATAACTACATCCATATCATATATGTTGTCTTAGTATTTAGTTCTAATGTGATTCTTGTATTGACTTCTTCAATAAAGTAGAGTTTTCTTATATTTTAGAAAATGTAATGCTCTAGTTTAAAATTGTGTCTTTCTTCGGTCTTTTCTTCCCTGTCACTTAGATGAAGTGCTCGATTGAACCAAAACCCCCTATTTACTTGTGGAATGTAAAGCATTAAAAACCGTATCCATTGCTCTATACATATGGAATTGTGGAATGTGGCATGCCTATTTTGTGATTTCATACATATTAAAATGCTGAAAATCTTACGTTGGTGCAGCTTGTTGGATTATTAAAATTCAAAAGTGCTTTCATTTGTTTGATTGGACAATCTCATAAATGTAGTTTATAACTTCAGATGTGCCTAGCTTGGTGATCTTGTTGTCTGTTCTTTGTTACCAAAACTGTTTGATATCACCTTATTACGTGCCTTATGCCTTGTACACTTATTGATGTTTGTGTGGCTGGATCATCTAAGCTGTTCTTAAGTTGAAGTTTATATGTTTTCAGCTTTCTATTCTAGTTGCATTGTTGCAAATTTTGTGGAGCAGCTTTGGACTTTTGCTTGGCCTTCTGCCATTGCCTTGATTCATTCAAGCCTCTTGCCAGTTGCTGTGGTGGGTTTCTTCACTAAAGTGGCTATAATTGTTGGTGGTCCCTTGGTTGGCAAATTAATGGACCATTTACCGAGAGTTCCTGCATATAACTACTTAACTGTCATTCAGGCAAGTTATCTAATGAGCCTTATAAAATCAAGCAGGATATAGCTCTTTTTCCTAAAATCAATCATTCTATTTTCAGGCAGCCACTCAGTTACTATCAGCAGCTATGATTATACATGCTCATTCTGTGCCTCCTACTTCAGTGTCTACATTGCTTCTGCGTCCATGGTTTGTCGTATTGGTTTCAGCTGGGGCTATTGAGAAGCTTTGTGGTGTGGCTTTGGGGGTTGCAAATGAGCGTGACTGGGTTGTGCTGGTACTGTCATTCAATGCTTTTCCTGTTCCCTTGACATGTAGTTTGTTATTTACAATAATTATTTATGATTCTTAGTGGTTTATTTCCACAGCTGACAGGAGTTAATAGGCCAGTCGCACTTGCACAAGCAAATGCTGTTCTAAATCGAATTGATCTGTTATCTGAGGTAATCTTTGCGCCAAGTTAATTAGCATACTTTTATACTTCTCGGTCCAATTTATTATTGTCTCCTGAAATATTCAGGAACTTTCTTATGAAGTATCAATTTTAGCCTACTTTTATACTTCTCGGTCCAATTTATTATTGTCTCATGAAATATTCAGGAACTTTCTTATGAAGTATCAATTTTAGCCCTGACTTTGAAACTCACAAATTTTTCAATTTCAGATAGCTGGAGCATTGCTGTTTGGAGTCCTTCTTTCCAAATTTCATCCTGTAATCTGCTTAAAAGTTGCTTCTGGCTTAATGATGGGACTGCTGCCTGTTACAGTAAGTTCTCTGTTTTTTTTTTTTTTCCTCGTTCATTAACTTACTTCAGTCAGAAGATAAATTCATTTTAATTTTTACTCATCATTCTTAATTTGCAGATTATTTTGACATGTTTAACCAACAAGCTTTCTACCGGCGTTCTTGACCGGCCTAAACCATCACAAACCTGTTGCAGATCATTCGATGAATATTCTGCATCAGATGCTGACAGTATAGGTACTATTTAAACCGATCTTCCCATAGACCCTGAAGATTTCATACGACAGTATATGCTTATATCTATCTGGTGGAAAACCAGTTGTTAAGGGTCTGGAAGCTATCAAGCTCGGCTGGAAAGAGTATCTTGGTCAGCCAGTCCTTCCTGCTAGTATTGCGTGGGTGCTTCTCTACTTCAATATTGTTCTTACACCAGGCAGTTTGATGACAGCATTTTTAACGCAGCATGGTATGTGAAAATTTCCTAAATGGTCCCTTTCTTTGGGAAGCTTCTTTCACTTCTAACAGATCATTTATTGCATAAAGATTATGCTGCCAATGAGGGGTTTTCATGTTCTAGATTTATTTTTTATTGTCAAATCTTTCATATAAATTAGCTAATATTCAAACTAAAATTCAATGTCGTTCTTTATTTTTTTTTGTCTTTCCTTTTCCTTGTTTTATTTGGGACCGAGGATTAGTTTTTTAGGTTATTGTACTAAACGTCCAAGTTTCCCTCCTCAATTGTTCTACAGGCTTACATCCATCCATCATTGGAGGATTTAGTGGAATGTGTGCTTTTATGGGTGTGGCAGCAACATTCGTGTCTTCGACTCTGGTCAAGCAATTTGGCATTTTAAAGGTATCTTTAGCTTTTCATTTTTATTTTTATATATTGCACATAAGAAAGTATGAGAATTTATTATATATAAACTATCTCATTGAAAATATTCTCTTTTCCAGGCTGGGGCAGTTGGGTTGGTGTTTCAAGCTTTATTTCTCAGCATGGCTGTTGCTGTATATATGAGTGGATCAATATCACATCAGAGTCCTCTTCTCCTTTTCTTGTTTCTGATTGTAAGTCACTAAAAAAGGTTTTGCCCTTTGATATTTGGTATCTAAGAATATAATTTCGACAGCCTTGGTAGTTGCTAATGGATTGAAATGATAGGTATAATTGAAGCCTGGATACTCTAAAATTGCAAAAATATCAGTGTCGTATGCGTATATAATACCGACACTCATACGATACTCCTAGGTCATATCTAGGGAGCATCCTCCAATTATTTTTCCTTTGAAAAATCGATGACAAATACATTTTAGATACAGCTGTGATGCATTTGGGGTACAACTACTTACCTTAAAGCTTCTTGTTAAGCCTTATTCTCCATCATATGGCGAGAGGAATTAGAATAGATACTCCTTTAGTCATTGTTTGAATAAAAATAAAAGTGATCCAAAAGGGGAGGGAATTTGGTTGTGTGGATTGCAACCTATGAATTTTGTCCTTGAAATATAGAGAAAATACAAAGTTATGGGACAAGGAAAGACAAGGTTGTGGGACAATAGTAGAAATGTGCATTATATATTTGATGGTGGTGTTGGACTTCTTGAATTGGCTGGGTTGCTCATTGATGACCAAAGTTACTATAGGGATTGATGTAGATGAAAATGATATAACTAGTGTTAGATAGTAAATGTAACCAATTCAGTAGAGCCAGAACTTCTTTCAAGCTTCAAATAGGACAAATGATGCCCTTTGACATTCGAACATGGGTTTGAGAAAATTTCATAACATTGCAAATTGTTTATAGGGGAAAGAATATATTTGGATATGGACAAAGGAAAGATCAAAGATGTGTCTATATATGCCTTTTTGTAAATAGTGATCGTCACCTACTGATGTGGTTATTGTATATTAATGAACAATAACCAAACCCTCTTTACAAATATCATGTGTTTATACAAAACGTACCTTTTTTGTAAGATCGTTTGAACGTATCTAGGCCACATTGCATCATACGCGCTGCGTATAAGTATCCAGGCTTCATTGATAGGAATTCAAAATCAGCTTGTACCAAATAAATTAGTGACCTAAATGGTGATATGGATTGTTCAAGATAGTGTGTTTTGAATACTGGTTAGATCCTTGTAAATTCTTTATTTTCAAATGCTATGTGCATTTGTTAGCAAACTAGACTTGGTTTGTATTGGGTGAAAATTTTGCGGAGCTTCATTGTTTTTCTAACTGGATATATCTACTGAAAAAAGTTTCAACAGATCATTGTAATTGAATATTTGTTAAACAAGTAAAAGCTTTGTATGAGTGAAAAAAGATTTGGTTGTCCCAAATTGCATATTATTTATTCATTTTTTGAAATGCAAACTTGGATTTTGATGGCAACTTAGATCTTGTCAAATTTACTCACATTAAATTTTTGTGTGTAAACTATTGTGCCTGTTTCTACAGATTTTATCACGGCTAGGACACATGTCATATGATGTCGTAGGGGCGCAAATTATCCAAACTGGGATCCCATCATCCAAAGCAAATCTCATCGGGACTACAGAAGTTGCTGTTGCAAGTCTGGCAGAGTCTCTAATGCTTGGTGTTGCAATAATCGCAAACGATCCTTCTCATTTTGGATGTTTAGCAATGTTGTCTCTTCTATCAGTGGTTGGTGCAGCATGGATGTTCTGTAGATGGTTGTCGAATCCAACAGACGAACAAAAAAGCCTTTTTTCTTATCATCCTCAGTTTTGA

Protein sequence

>MS.gene40781.t1

MVIASPSFNLIHFTIPPSFSHRPSSRLRYRCKRLNLNYYPSITQRFACISSRCSITNTDIQLELDHVNEDKSEGTCSIVEQECPVPIKINTDILVENDSLNLLSETAFVDTVLTSLPVLSEEEQHVLAATPAHPAGLYAFYSSCIVANFVEQLWTFAWPSAIALIHSSLLPVAVVGFFTKVAIIVGGPLVGKLMDHLPRVPAYNYLTVIQAATQLLSAAMIIHAHSVPPTSVSTLLLRPWFVVLVSAGAIEKLCGVALGVANERDWVVLLTGVNRPVALAQANAVLNRIDLLSEIAGALLFGVLLSKFHPVICLKVASGLMMGLLPVTIILTCLTNKLSTGVLDRPKPSQTCCRSFDEYSASDADSIVVKGLEAIKLGWKEYLGQPVLPASIAWVLLYFNIVLTPGSLMTAFLTQHGLHPSIIGGFSGMCAFMGVAATFVSSTLVKQFGILKAGAVGLVFQALFLSMAVAVYMSGSISHQSPLLLFLFLIILSRLGHMSYDVVGAQIIQTGIPSSKANLIGTTEVAVASLAESLMLGVAIIANDPSHFGCLAMLSLLSVVGAAWMFCRWLSNPTDEQKSLFSYHPQF