Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58558.t1 | XP_024639447.1 | 98.4 | 250 | 4 | 0 | 80 | 329 | 52 | 301 | 6.10E-136 | 493.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58558.t1 | Q6NQK9 | 71.1 | 242 | 69 | 1 | 80 | 321 | 45 | 285 | 2.2e-94 | 347.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58558.t1 | A0A396HRT9 | 98.4 | 250 | 4 | 0 | 80 | 329 | 52 | 301 | 4.4e-136 | 493.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene58558 | 0.826769 | 2.26E-54 | -1.69E-46 |
| MS.gene049217 | MS.gene58558 | 0.845249 | 4.57E-59 | -1.69E-46 |
| MS.gene049222 | MS.gene58558 | 0.842482 | 2.52E-58 | -1.69E-46 |
| MS.gene049285 | MS.gene58558 | 0.836821 | 7.47E-57 | -1.69E-46 |
| MS.gene049320 | MS.gene58558 | 0.824532 | 7.67E-54 | -1.69E-46 |
| MS.gene049609 | MS.gene58558 | 0.836411 | 9.51E-57 | -1.69E-46 |
| MS.gene049627 | MS.gene58558 | 0.802884 | 4.54E-49 | -1.69E-46 |
| MS.gene049633 | MS.gene58558 | 0.831205 | 1.90E-55 | -1.69E-46 |
| MS.gene049805 | MS.gene58558 | 0.811269 | 7.62E-51 | -1.69E-46 |
| MS.gene050163 | MS.gene58558 | 0.825702 | 4.06E-54 | -1.69E-46 |
| MS.gene050165 | MS.gene58558 | 0.814941 | 1.19E-51 | -1.69E-46 |
| MS.gene050333 | MS.gene58558 | 0.824584 | 7.46E-54 | -1.69E-46 |
| MS.gene050504 | MS.gene58558 | 0.815922 | 7.21E-52 | -1.69E-46 |
| MS.gene050518 | MS.gene58558 | 0.834567 | 2.78E-56 | -1.69E-46 |
| MS.gene050593 | MS.gene58558 | 0.829893 | 3.99E-55 | -1.69E-46 |
| MS.gene050612 | MS.gene58558 | 0.824357 | 8.43E-54 | -1.69E-46 |
| MS.gene050662 | MS.gene58558 | 0.81614 | 6.45E-52 | -1.69E-46 |
| MS.gene050675 | MS.gene58558 | 0.834598 | 2.73E-56 | -1.69E-46 |
| MS.gene050699 | MS.gene58558 | 0.81717 | 3.79E-52 | -1.69E-46 |
| MS.gene050747 | MS.gene58558 | 0.818488 | 1.91E-52 | -1.69E-46 |
| MS.gene050772 | MS.gene58558 | 0.855943 | 4.49E-62 | -1.69E-46 |
| MS.gene05080 | MS.gene58558 | 0.839302 | 1.72E-57 | -1.69E-46 |
| MS.gene050868 | MS.gene58558 | 0.807215 | 5.64E-50 | -1.69E-46 |
| MS.gene050871 | MS.gene58558 | 0.805651 | 1.20E-49 | -1.69E-46 |
| MS.gene050950 | MS.gene58558 | 0.815544 | 8.76E-52 | -1.69E-46 |
| MS.gene050986 | MS.gene58558 | 0.803203 | 3.90E-49 | -1.69E-46 |
| MS.gene05105 | MS.gene58558 | 0.817922 | 2.56E-52 | -1.69E-46 |
| MS.gene051387 | MS.gene58558 | 0.814723 | 1.33E-51 | -1.69E-46 |
| MS.gene051666 | MS.gene58558 | 0.819269 | 1.27E-52 | -1.69E-46 |
| MS.gene051694 | MS.gene58558 | 0.82626 | 2.99E-54 | -1.69E-46 |
| MS.gene051810 | MS.gene58558 | 0.820401 | 6.99E-53 | -1.69E-46 |
| MS.gene051858 | MS.gene58558 | 0.864784 | 9.47E-65 | -1.69E-46 |
| MS.gene051874 | MS.gene58558 | 0.804993 | 1.65E-49 | -1.69E-46 |
| MS.gene051949 | MS.gene58558 | 0.801727 | 7.85E-49 | -1.69E-46 |
| MS.gene052271 | MS.gene58558 | 0.82991 | 3.95E-55 | -1.69E-46 |
| MS.gene052379 | MS.gene58558 | 0.816125 | 6.50E-52 | -1.69E-46 |
| MS.gene052484 | MS.gene58558 | 0.808128 | 3.61E-50 | -1.69E-46 |
| MS.gene052615 | MS.gene58558 | 0.809496 | 1.84E-50 | -1.69E-46 |
| MS.gene052870 | MS.gene58558 | 0.803566 | 3.28E-49 | -1.69E-46 |
| MS.gene052872 | MS.gene58558 | 0.800331 | 1.52E-48 | -1.69E-46 |
| MS.gene052966 | MS.gene58558 | 0.821717 | 3.48E-53 | -1.69E-46 |
| MS.gene053009 | MS.gene58558 | 0.846555 | 2.02E-59 | -1.69E-46 |
| MS.gene053203 | MS.gene58558 | 0.816823 | 4.53E-52 | -1.69E-46 |
| MS.gene053207 | MS.gene58558 | 0.851792 | 7.05E-61 | -1.69E-46 |
| MS.gene053213 | MS.gene58558 | 0.830563 | 2.74E-55 | -1.69E-46 |
| MS.gene053286 | MS.gene58558 | 0.822092 | 2.85E-53 | -1.69E-46 |
| MS.gene053322 | MS.gene58558 | 0.807269 | 5.49E-50 | -1.69E-46 |
| MS.gene053574 | MS.gene58558 | 0.847146 | 1.39E-59 | -1.69E-46 |
| MS.gene053626 | MS.gene58558 | 0.801841 | 7.44E-49 | -1.69E-46 |
| MS.gene053632 | MS.gene58558 | 0.808488 | 3.02E-50 | -1.69E-46 |
| MS.gene053824 | MS.gene58558 | 0.813599 | 2.36E-51 | -1.69E-46 |
| MS.gene054003 | MS.gene58558 | 0.806855 | 6.72E-50 | -1.69E-46 |
| MS.gene054595 | MS.gene58558 | 0.813957 | 1.97E-51 | -1.69E-46 |
| MS.gene054600 | MS.gene58558 | 0.831044 | 2.09E-55 | -1.69E-46 |
| MS.gene054642 | MS.gene58558 | 0.831381 | 1.72E-55 | -1.69E-46 |
| MS.gene054927 | MS.gene58558 | 0.809733 | 1.64E-50 | -1.69E-46 |
| MS.gene054954 | MS.gene58558 | 0.811571 | 6.55E-51 | -1.69E-46 |
| MS.gene05505 | MS.gene58558 | 0.804221 | 2.40E-49 | -1.69E-46 |
| MS.gene055206 | MS.gene58558 | 0.835822 | 1.34E-56 | -1.69E-46 |
| MS.gene055224 | MS.gene58558 | 0.805801 | 1.12E-49 | -1.69E-46 |
| MS.gene055362 | MS.gene58558 | 0.82077 | 5.75E-53 | -1.69E-46 |
| MS.gene055502 | MS.gene58558 | 0.838589 | 2.63E-57 | -1.69E-46 |
| MS.gene055577 | MS.gene58558 | 0.837817 | 4.16E-57 | -1.69E-46 |
| MS.gene055636 | MS.gene58558 | 0.809931 | 1.48E-50 | -1.69E-46 |
| MS.gene055638 | MS.gene58558 | 0.804136 | 2.50E-49 | -1.69E-46 |
| MS.gene055647 | MS.gene58558 | 0.826471 | 2.66E-54 | -1.69E-46 |
| MS.gene055722 | MS.gene58558 | 0.849577 | 2.96E-60 | -1.69E-46 |
| MS.gene05592 | MS.gene58558 | 0.846998 | 1.53E-59 | -1.69E-46 |
| MS.gene055941 | MS.gene58558 | 0.818897 | 1.54E-52 | -1.69E-46 |
| MS.gene056083 | MS.gene58558 | 0.821164 | 4.67E-53 | -1.69E-46 |
| MS.gene056374 | MS.gene58558 | 0.810287 | 1.24E-50 | -1.69E-46 |
| MS.gene056448 | MS.gene58558 | 0.80701 | 6.23E-50 | -1.69E-46 |
| MS.gene056449 | MS.gene58558 | 0.805918 | 1.06E-49 | -1.69E-46 |
| MS.gene056510 | MS.gene58558 | 0.823751 | 1.17E-53 | -1.69E-46 |
| MS.gene056549 | MS.gene58558 | 0.812044 | 5.17E-51 | -1.69E-46 |
| MS.gene056657 | MS.gene58558 | 0.824087 | 9.76E-54 | -1.69E-46 |
| MS.gene056692 | MS.gene58558 | 0.806696 | 7.26E-50 | -1.69E-46 |
| MS.gene057076 | MS.gene58558 | 0.828021 | 1.13E-54 | -1.69E-46 |
| MS.gene057129 | MS.gene58558 | 0.810515 | 1.11E-50 | -1.69E-46 |
| MS.gene057146 | MS.gene58558 | 0.808999 | 2.35E-50 | -1.69E-46 |
| MS.gene057331 | MS.gene58558 | 0.836355 | 9.82E-57 | -1.69E-46 |
| MS.gene057416 | MS.gene58558 | 0.853972 | 1.68E-61 | -1.69E-46 |
| MS.gene057734 | MS.gene58558 | 0.800599 | 1.34E-48 | -1.69E-46 |
| MS.gene057831 | MS.gene58558 | 0.80622 | 9.14E-50 | -1.69E-46 |
| MS.gene057926 | MS.gene58558 | 0.802433 | 5.62E-49 | -1.69E-46 |
| MS.gene058130 | MS.gene58558 | 0.820383 | 7.06E-53 | -1.69E-46 |
| MS.gene058338 | MS.gene58558 | 0.809141 | 2.19E-50 | -1.69E-46 |
| MS.gene05837 | MS.gene58558 | 0.847162 | 1.38E-59 | -1.69E-46 |
| MS.gene058419 | MS.gene58558 | 0.838877 | 2.21E-57 | -1.69E-46 |
| MS.gene058544 | MS.gene58558 | 0.809043 | 2.30E-50 | -1.69E-46 |
| MS.gene058723 | MS.gene58558 | 0.830353 | 3.08E-55 | -1.69E-46 |
| MS.gene058773 | MS.gene58558 | 0.863645 | 2.15E-64 | -1.69E-46 |
| MS.gene05883 | MS.gene58558 | 0.811307 | 7.48E-51 | -1.69E-46 |
| MS.gene059022 | MS.gene58558 | 0.828367 | 9.35E-55 | -1.69E-46 |
| MS.gene059023 | MS.gene58558 | 0.826406 | 2.76E-54 | -1.69E-46 |
| MS.gene059029 | MS.gene58558 | 0.839826 | 1.26E-57 | -1.69E-46 |
| MS.gene05913 | MS.gene58558 | 0.811842 | 5.72E-51 | -1.69E-46 |
| MS.gene05934 | MS.gene58558 | 0.811829 | 5.76E-51 | -1.69E-46 |
| MS.gene059536 | MS.gene58558 | 0.828716 | 7.70E-55 | -1.69E-46 |
| MS.gene059677 | MS.gene58558 | 0.824049 | 9.96E-54 | -1.69E-46 |
| MS.gene059711 | MS.gene58558 | 0.819614 | 1.06E-52 | -1.69E-46 |
| MS.gene059718 | MS.gene58558 | 0.850875 | 1.28E-60 | -1.69E-46 |
| MS.gene059902 | MS.gene58558 | 0.865103 | 7.53E-65 | -1.69E-46 |
| MS.gene059960 | MS.gene58558 | 0.800278 | 1.55E-48 | -1.69E-46 |
| MS.gene060762 | MS.gene58558 | 0.811432 | 7.02E-51 | -1.69E-46 |
| MS.gene060804 | MS.gene58558 | 0.800118 | 1.67E-48 | -1.69E-46 |
| MS.gene060818 | MS.gene58558 | 0.810014 | 1.42E-50 | -1.69E-46 |
| MS.gene060837 | MS.gene58558 | 0.838809 | 2.31E-57 | -1.69E-46 |
| MS.gene06092 | MS.gene58558 | 0.835114 | 2.03E-56 | -1.69E-46 |
| MS.gene061134 | MS.gene58558 | 0.826132 | 3.21E-54 | -1.69E-46 |
| MS.gene061150 | MS.gene58558 | 0.817574 | 3.07E-52 | -1.69E-46 |
| MS.gene061171 | MS.gene58558 | 0.81589 | 7.33E-52 | -1.69E-46 |
| MS.gene061200 | MS.gene58558 | 0.840772 | 7.11E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58558.t1 | MTR_5g037050 | 95.238 | 210 | 9 | 1 | 80 | 288 | 52 | 261 | 9.15e-143 | 404 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58558.t1 | AT1G59840 | 71.074 | 242 | 69 | 1 | 80 | 321 | 45 | 285 | 1.44e-123 | 357 |
| MS.gene58558.t1 | AT1G59840 | 71.074 | 242 | 69 | 1 | 80 | 321 | 45 | 285 | 1.44e-123 | 357 |
| MS.gene58558.t1 | AT1G59840 | 65.702 | 242 | 68 | 2 | 80 | 321 | 45 | 271 | 7.65e-110 | 321 |
Find 97 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAAATCGCGTTTGGGGTTT+GGG | 0.157929 | 5.3:+25427513 | None:intergenic |
| ATTGGCTGTCACTAATATTT+TGG | 0.169732 | 5.3:-25426273 | MS.gene58558:CDS |
| GATAAAGGAATTGCAATTAT+TGG | 0.221692 | 5.3:-25421603 | MS.gene58558:CDS |
| CGCGTTTGGGGTTTGGGGTT+CGG | 0.244937 | 5.3:+25427519 | None:intergenic |
| CGAGCAGACCTCTTAACTTT+AGG | 0.254418 | 5.3:-25426296 | MS.gene58558:CDS |
| GTTTAAATCTCTTATGCTTA+TGG | 0.260725 | 5.3:+25428708 | None:intergenic |
| ACAAACTTGCCTTAAGGTTT+TGG | 0.261283 | 5.3:+25428792 | None:intergenic |
| ACAAACTTGCCTTAAGGTTT+TGG | 0.261283 | 5.3:+25428864 | None:intergenic |
| AGGAATTGCGTTCTTCAATT+TGG | 0.278613 | 5.3:-25424984 | MS.gene58558:CDS |
| GCTTACCACACTTATAGATT+TGG | 0.289785 | 5.3:+25426223 | None:intergenic |
| GGGAGCCCCGGGAGCGGCAA+TGG | 0.297686 | 5.3:-25428746 | MS.gene58558:CDS |
| TTACAACCACTTGGAGATAA+AGG | 0.298640 | 5.3:-25421618 | MS.gene58558:CDS |
| AGAAAATCGCGTTTGGGGTT+TGG | 0.300727 | 5.3:+25427512 | None:intergenic |
| CCCAGGATAAAGAGATAAAT+TGG | 0.302853 | 5.3:+25424707 | None:intergenic |
| CGGCAATGGGCCAAACATTC+AGG | 0.322907 | 5.3:-25428924 | None:intergenic |
| TGATCCTTGCATCAATTTAT+CGG | 0.323093 | 5.3:+25424911 | None:intergenic |
| CTCTTATGGTCCTGAATGTT+TGG | 0.326697 | 5.3:+25428914 | None:intergenic |
| CTTACCACACTTATAGATTT+GGG | 0.327187 | 5.3:+25426224 | None:intergenic |
| GATGCAAGGATCAGTATATC+AGG | 0.330105 | 5.3:-25424901 | MS.gene58558:CDS |
| TTTGCTGCAGAATCTTCTCC+TGG | 0.331987 | 5.3:-25424960 | MS.gene58558:CDS |
| TGTGGTGTTTAAATCTCTTA+TGG | 0.332634 | 5.3:+25428900 | None:intergenic |
| TGCTTATGGTCCTGAACGTT+TGG | 0.335787 | 5.3:+25428722 | None:intergenic |
| GGAGCCCCGGGAGCGGCAAT+GGG | 0.341510 | 5.3:-25428745 | MS.gene58558:CDS |
| GCCAATTTATCTCTTTATCC+TGG | 0.346357 | 5.3:-25424708 | MS.gene58558:CDS |
| AGTCCGGGGAGCCCCGGGAG+CGG | 0.353365 | 5.3:-25428752 | MS.gene58558:CDS |
| CGGCAATGGGCCAAACGTTC+AGG | 0.355741 | 5.3:-25428732 | MS.gene58558:CDS |
| CTCCCGTTGCCGACGCCGGC+AGG | 0.368493 | 5.3:-25427382 | MS.gene58558:intron |
| TCAGGTAGAAAATCGCGTTT+GGG | 0.371139 | 5.3:+25427506 | None:intergenic |
| AACCTGCCGGCGTCGGCAAC+GGG | 0.371673 | 5.3:+25427380 | None:intergenic |
| GTTTGGCCCATTGCCGCTCC+CGG | 0.377768 | 5.3:+25428739 | None:intergenic |
| TTGCCGCTCCCGGGGCTCCC+CGG | 0.386010 | 5.3:+25428749 | None:intergenic |
| CTCTTCAATCGAACCATCTC+CGG | 0.387017 | 5.3:-25427410 | MS.gene58558:CDS |
| ATGCATACAAACTTGCCTTA+AGG | 0.392607 | 5.3:+25428786 | None:intergenic |
| ATGCATACAAACTTGCCTTA+AGG | 0.392607 | 5.3:+25428858 | None:intergenic |
| TATCAGGGTGTTATGAAATC+TGG | 0.393157 | 5.3:-25424885 | MS.gene58558:CDS |
| AGTCCGGGGAGCCCCGGGAG+CGG | 0.401736 | 5.3:-25428824 | MS.gene58558:CDS |
| AGCTCCGTAAGTGCAACGTC+AGG | 0.407776 | 5.3:+25425476 | None:intergenic |
| GAAACGGCACCAACGTAGAT+TGG | 0.416070 | 5.3:+25427446 | None:intergenic |
| TTTGGCCCATTGCCGCTCCC+GGG | 0.417233 | 5.3:+25428740 | None:intergenic |
| ATCAGGTAGAAAATCGCGTT+TGG | 0.417803 | 5.3:+25427505 | None:intergenic |
| TTGCACTTACGGAGCTGCTT+TGG | 0.419571 | 5.3:-25425469 | MS.gene58558:intron |
| TCTCCCTGACGTTGCACTTA+CGG | 0.422359 | 5.3:-25425480 | MS.gene58558:CDS |
| AGGTTTCACTACTTCTGATC+AGG | 0.430529 | 5.3:-25421565 | MS.gene58558:intron |
| TGAGTATTTGAAGGCAGAAA+TGG | 0.446826 | 5.3:+25424672 | None:intergenic |
| TACCTATATCGGAGAGAAGC+TGG | 0.448013 | 5.3:-25421229 | MS.gene58558:CDS |
| CAGGCATGGATTACCTATAT+CGG | 0.454266 | 5.3:-25421240 | MS.gene58558:CDS |
| AAGTTTGTATGCATGATGTT+GGG | 0.455544 | 5.3:-25428777 | MS.gene58558:CDS |
| AAGTTTGTATGCATGATGTT+GGG | 0.455544 | 5.3:-25428849 | MS.gene58558:CDS |
| CGCAATACCTGAGTATTTGA+AGG | 0.456371 | 5.3:+25424663 | None:intergenic |
| ATTGCTCCCGTTGCCGACGC+CGG | 0.458512 | 5.3:-25427386 | MS.gene58558:CDS |
| ATCCAGCTTCTCTCCGATAT+AGG | 0.459920 | 5.3:+25421227 | None:intergenic |
| TACCCAAAACCAAAACCTTA+AGG | 0.461393 | 5.3:-25428873 | MS.gene58558:CDS |
| GTCGGCAACGGGAGCAATGC+CGG | 0.464404 | 5.3:+25427391 | None:intergenic |
| GTACCGCTCCCGGGGCTCCC+CGG | 0.473616 | 5.3:+25428821 | None:intergenic |
| AAACGGCACCAACGTAGATT+GGG | 0.480694 | 5.3:+25427447 | None:intergenic |
| AGACCTCTTAACTTTAGGAT+TGG | 0.481817 | 5.3:-25426291 | MS.gene58558:CDS |
| CCAATTTATCTCTTTATCCT+GGG | 0.500173 | 5.3:-25424707 | MS.gene58558:CDS |
| TACCCAAAACCAAAACCTTA+AGG | 0.502999 | 5.3:-25428801 | MS.gene58558:CDS |
| TACATGTTCAGAGAGTTACT+TGG | 0.506725 | 5.3:-25424730 | MS.gene58558:intron |
| AACGGGAGCAATGCCGGAGA+TGG | 0.511592 | 5.3:+25427397 | None:intergenic |
| CAAGTTTGTATGCATGATGT+TGG | 0.512232 | 5.3:-25428778 | MS.gene58558:CDS |
| CAAGTTTGTATGCATGATGT+TGG | 0.512232 | 5.3:-25428850 | MS.gene58558:CDS |
| GAACCTGCCGGCGTCGGCAA+CGG | 0.512768 | 5.3:+25427379 | None:intergenic |
| TTGCTGCAGAATCTTCTCCT+GGG | 0.513330 | 5.3:-25424959 | MS.gene58558:CDS |
| ATTTCTGCCTTCAAATACTC+AGG | 0.520975 | 5.3:-25424670 | MS.gene58558:intron |
| AAAATCGCGTTTGGGGTTTG+GGG | 0.521649 | 5.3:+25427514 | None:intergenic |
| AAAGGAATTGCAATTATTGG+TGG | 0.524269 | 5.3:-25421600 | MS.gene58558:CDS |
| CAGCCAATCCTAAAGTTAAG+AGG | 0.537186 | 5.3:+25426288 | None:intergenic |
| ATTGGTGGTGACACAATTCG+AGG | 0.546724 | 5.3:-25421585 | MS.gene58558:CDS |
| GAATGAGAACCTGCCGGCGT+CGG | 0.549104 | 5.3:+25427373 | None:intergenic |
| GCAGAATCTTCTCCTGGGAA+TGG | 0.549364 | 5.3:-25424954 | MS.gene58558:CDS |
| AATAACAAGTGATCGGCAGC+AGG | 0.550991 | 5.3:+25425016 | None:intergenic |
| CTCACAGCCTCGCCATTCCC+AGG | 0.562199 | 5.3:+25424942 | None:intergenic |
| AATGGCAGCTCAGACTTCCC+AGG | 0.569160 | 5.3:+25424690 | None:intergenic |
| CGTAAACAATAACAAGTGAT+CGG | 0.569368 | 5.3:+25425009 | None:intergenic |
| CGGCACCAACGTAGATTGGG+AGG | 0.571107 | 5.3:+25427450 | None:intergenic |
| GATGGTTCGATTGAAGAGTA+CGG | 0.587779 | 5.3:+25427415 | None:intergenic |
| CACTTGTTATTGTTTACGAG+AGG | 0.592212 | 5.3:-25425004 | MS.gene58558:CDS |
| TTGGCCCATTGCCGCTCCCG+GGG | 0.593237 | 5.3:+25428741 | None:intergenic |
| TTCTTGCATTCAACTCCCTG+TGG | 0.593288 | 5.3:+25425515 | None:intergenic |
| AGTTTGTATGCATGATGTTG+GGG | 0.595128 | 5.3:-25428776 | MS.gene58558:CDS |
| AGTTTGTATGCATGATGTTG+GGG | 0.595128 | 5.3:-25428848 | MS.gene58558:CDS |
| GAGTACGGCGAAGAGAGAAA+CGG | 0.595812 | 5.3:+25427430 | None:intergenic |
| GCACCAACGTAGATTGGGAG+GGG | 0.599147 | 5.3:+25427452 | None:intergenic |
| GCAATTCCTTTATCTCCAAG+TGG | 0.617458 | 5.3:+25421612 | None:intergenic |
| ATGCAAGGATCAGTATATCA+GGG | 0.627292 | 5.3:-25424900 | MS.gene58558:CDS |
| AAAACCCAAATCTATAAGTG+TGG | 0.629385 | 5.3:-25426228 | MS.gene58558:intron |
| ATCTTCTCCTGGGAATGGCG+AGG | 0.633157 | 5.3:-25424949 | MS.gene58558:CDS |
| GCTCCGTAAGTGCAACGTCA+GGG | 0.634286 | 5.3:+25425477 | None:intergenic |
| GACACCGATAAATTGATGCA+AGG | 0.639272 | 5.3:-25424915 | MS.gene58558:CDS |
| GGCACCAACGTAGATTGGGA+GGG | 0.641224 | 5.3:+25427451 | None:intergenic |
| GAATGGCGAGGCTGTGAGTG+TGG | 0.647858 | 5.3:-25424937 | MS.gene58558:CDS |
| CGACCCCTCCCAATCTACGT+TGG | 0.664091 | 5.3:-25427455 | MS.gene58558:CDS |
| TTTGTCCAGGTAAATCCACA+GGG | 0.666413 | 5.3:-25425530 | MS.gene58558:intron |
| CAGGTAGAAAATCGCGTTTG+GGG | 0.684893 | 5.3:+25427507 | None:intergenic |
| GTTTGTATGCATGATGTTGG+GGG | 0.694530 | 5.3:-25428775 | MS.gene58558:CDS |
| GTTTGTATGCATGATGTTGG+GGG | 0.694530 | 5.3:-25428847 | MS.gene58558:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 25421182 | 25428941 | 25421182 | ID=MS.gene58558 |
| chr5.3 | mRNA | 25421182 | 25428941 | 25421182 | ID=MS.gene58558.t1;Parent=MS.gene58558 |
| chr5.3 | exon | 25428706 | 25428941 | 25428706 | ID=MS.gene58558.t1.exon1;Parent=MS.gene58558.t1 |
| chr5.3 | CDS | 25428706 | 25428941 | 25428706 | ID=cds.MS.gene58558.t1;Parent=MS.gene58558.t1 |
| chr5.3 | exon | 25427383 | 25427544 | 25427383 | ID=MS.gene58558.t1.exon2;Parent=MS.gene58558.t1 |
| chr5.3 | CDS | 25427383 | 25427544 | 25427383 | ID=cds.MS.gene58558.t1;Parent=MS.gene58558.t1 |
| chr5.3 | exon | 25426229 | 25426328 | 25426229 | ID=MS.gene58558.t1.exon3;Parent=MS.gene58558.t1 |
| chr5.3 | CDS | 25426229 | 25426328 | 25426229 | ID=cds.MS.gene58558.t1;Parent=MS.gene58558.t1 |
| chr5.3 | exon | 25425470 | 25425543 | 25425470 | ID=MS.gene58558.t1.exon4;Parent=MS.gene58558.t1 |
| chr5.3 | CDS | 25425470 | 25425543 | 25425470 | ID=cds.MS.gene58558.t1;Parent=MS.gene58558.t1 |
| chr5.3 | exon | 25424880 | 25425064 | 25424880 | ID=MS.gene58558.t1.exon5;Parent=MS.gene58558.t1 |
| chr5.3 | CDS | 25424880 | 25425064 | 25424880 | ID=cds.MS.gene58558.t1;Parent=MS.gene58558.t1 |
| chr5.3 | exon | 25424671 | 25424741 | 25424671 | ID=MS.gene58558.t1.exon6;Parent=MS.gene58558.t1 |
| chr5.3 | CDS | 25424671 | 25424741 | 25424671 | ID=cds.MS.gene58558.t1;Parent=MS.gene58558.t1 |
| chr5.3 | exon | 25421566 | 25421649 | 25421566 | ID=MS.gene58558.t1.exon7;Parent=MS.gene58558.t1 |
| chr5.3 | CDS | 25421566 | 25421649 | 25421566 | ID=cds.MS.gene58558.t1;Parent=MS.gene58558.t1 |
| chr5.3 | exon | 25421182 | 25421259 | 25421182 | ID=MS.gene58558.t1.exon8;Parent=MS.gene58558.t1 |
| chr5.3 | CDS | 25421182 | 25421259 | 25421182 | ID=cds.MS.gene58558.t1;Parent=MS.gene58558.t1 |
| Gene Sequence |
| Protein sequence |
