Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74240.t1 | KEH44546.1 | 89.7 | 426 | 33 | 8 | 5 | 426 | 3 | 421 | 6.40E-202 | 713.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74240.t1 | A0A072VS83 | 89.7 | 426 | 33 | 8 | 5 | 426 | 3 | 421 | 4.6e-202 | 713.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene74240 | 0.829884 | 4.01E-55 | -1.69E-46 |
| MS.gene049171 | MS.gene74240 | 0.829354 | 5.40E-55 | -1.69E-46 |
| MS.gene049217 | MS.gene74240 | 0.808042 | 3.76E-50 | -1.69E-46 |
| MS.gene049222 | MS.gene74240 | 0.842846 | 2.01E-58 | -1.69E-46 |
| MS.gene049609 | MS.gene74240 | 0.838447 | 2.86E-57 | -1.69E-46 |
| MS.gene049633 | MS.gene74240 | 0.809133 | 2.20E-50 | -1.69E-46 |
| MS.gene049805 | MS.gene74240 | 0.805253 | 1.46E-49 | -1.69E-46 |
| MS.gene050170 | MS.gene74240 | 0.824182 | 9.27E-54 | -1.69E-46 |
| MS.gene050553 | MS.gene74240 | 0.810909 | 9.12E-51 | -1.69E-46 |
| MS.gene050577 | MS.gene74240 | 0.821048 | 4.97E-53 | -1.69E-46 |
| MS.gene050670 | MS.gene74240 | 0.800275 | 1.56E-48 | -1.69E-46 |
| MS.gene050699 | MS.gene74240 | 0.810253 | 1.26E-50 | -1.69E-46 |
| MS.gene050747 | MS.gene74240 | 0.857101 | 2.05E-62 | -1.69E-46 |
| MS.gene050772 | MS.gene74240 | 0.818803 | 1.62E-52 | -1.69E-46 |
| MS.gene05080 | MS.gene74240 | 0.843288 | 1.54E-58 | -1.69E-46 |
| MS.gene05081 | MS.gene74240 | 0.831928 | 1.26E-55 | -1.69E-46 |
| MS.gene050868 | MS.gene74240 | 0.82524 | 5.22E-54 | -1.69E-46 |
| MS.gene050871 | MS.gene74240 | 0.825608 | 4.27E-54 | -1.69E-46 |
| MS.gene050904 | MS.gene74240 | 0.817432 | 3.31E-52 | -1.69E-46 |
| MS.gene050950 | MS.gene74240 | 0.838468 | 2.82E-57 | -1.69E-46 |
| MS.gene05105 | MS.gene74240 | 0.821606 | 3.69E-53 | -1.69E-46 |
| MS.gene051387 | MS.gene74240 | 0.800128 | 1.67E-48 | -1.69E-46 |
| MS.gene051525 | MS.gene74240 | 0.807875 | 4.08E-50 | -1.69E-46 |
| MS.gene051666 | MS.gene74240 | 0.80675 | 7.07E-50 | -1.69E-46 |
| MS.gene051694 | MS.gene74240 | 0.810656 | 1.03E-50 | -1.69E-46 |
| MS.gene051838 | MS.gene74240 | 0.843685 | 1.20E-58 | -1.69E-46 |
| MS.gene051858 | MS.gene74240 | 0.830027 | 3.70E-55 | -1.69E-46 |
| MS.gene051874 | MS.gene74240 | 0.801215 | 1.00E-48 | -1.69E-46 |
| MS.gene051941 | MS.gene74240 | 0.823639 | 1.24E-53 | -1.69E-46 |
| MS.gene052164 | MS.gene74240 | 0.841195 | 5.51E-58 | -1.69E-46 |
| MS.gene052346 | MS.gene74240 | 0.82849 | 8.74E-55 | -1.69E-46 |
| MS.gene052414 | MS.gene74240 | 0.810588 | 1.07E-50 | -1.69E-46 |
| MS.gene052482 | MS.gene74240 | 0.814038 | 1.89E-51 | -1.69E-46 |
| MS.gene052486 | MS.gene74240 | 0.825862 | 3.72E-54 | -1.69E-46 |
| MS.gene052501 | MS.gene74240 | 0.834951 | 2.23E-56 | -1.69E-46 |
| MS.gene052503 | MS.gene74240 | 0.84609 | 2.70E-59 | -1.69E-46 |
| MS.gene052505 | MS.gene74240 | 0.831208 | 1.90E-55 | -1.69E-46 |
| MS.gene052615 | MS.gene74240 | 0.847421 | 1.17E-59 | -1.69E-46 |
| MS.gene052823 | MS.gene74240 | 0.843341 | 1.49E-58 | -1.69E-46 |
| MS.gene052825 | MS.gene74240 | 0.843132 | 1.69E-58 | -1.69E-46 |
| MS.gene052966 | MS.gene74240 | 0.813653 | 2.30E-51 | -1.69E-46 |
| MS.gene052982 | MS.gene74240 | 0.841957 | 3.47E-58 | -1.69E-46 |
| MS.gene053203 | MS.gene74240 | 0.823559 | 1.30E-53 | -1.69E-46 |
| MS.gene053207 | MS.gene74240 | 0.815961 | 7.07E-52 | -1.69E-46 |
| MS.gene053318 | MS.gene74240 | 0.816894 | 4.37E-52 | -1.69E-46 |
| MS.gene053436 | MS.gene74240 | 0.828313 | 9.63E-55 | -1.69E-46 |
| MS.gene053480 | MS.gene74240 | 0.839843 | 1.24E-57 | -1.69E-46 |
| MS.gene053574 | MS.gene74240 | 0.832123 | 1.13E-55 | -1.69E-46 |
| MS.gene053626 | MS.gene74240 | 0.849708 | 2.72E-60 | -1.69E-46 |
| MS.gene053632 | MS.gene74240 | 0.839623 | 1.42E-57 | -1.69E-46 |
| MS.gene053824 | MS.gene74240 | 0.856165 | 3.87E-62 | -1.69E-46 |
| MS.gene054344 | MS.gene74240 | 0.808577 | 2.89E-50 | -1.69E-46 |
| MS.gene054408 | MS.gene74240 | 0.825617 | 4.25E-54 | -1.69E-46 |
| MS.gene054595 | MS.gene74240 | 0.815884 | 7.35E-52 | -1.69E-46 |
| MS.gene054600 | MS.gene74240 | 0.817017 | 4.10E-52 | -1.69E-46 |
| MS.gene05470 | MS.gene74240 | 0.809801 | 1.58E-50 | -1.69E-46 |
| MS.gene054927 | MS.gene74240 | 0.866842 | 2.12E-65 | -1.69E-46 |
| MS.gene05494 | MS.gene74240 | 0.81475 | 1.31E-51 | -1.69E-46 |
| MS.gene05505 | MS.gene74240 | 0.80104 | 1.09E-48 | -1.69E-46 |
| MS.gene055206 | MS.gene74240 | 0.812408 | 4.30E-51 | -1.69E-46 |
| MS.gene055362 | MS.gene74240 | 0.801139 | 1.04E-48 | -1.69E-46 |
| MS.gene055502 | MS.gene74240 | 0.836309 | 1.01E-56 | -1.69E-46 |
| MS.gene055539 | MS.gene74240 | 0.807385 | 5.19E-50 | -1.69E-46 |
| MS.gene055577 | MS.gene74240 | 0.843688 | 1.20E-58 | -1.69E-46 |
| MS.gene055741 | MS.gene74240 | 0.846606 | 1.95E-59 | -1.69E-46 |
| MS.gene055744 | MS.gene74240 | 0.83996 | 1.16E-57 | -1.69E-46 |
| MS.gene055750 | MS.gene74240 | 0.813301 | 2.74E-51 | -1.69E-46 |
| MS.gene05589 | MS.gene74240 | 0.830181 | 3.39E-55 | -1.69E-46 |
| MS.gene055909 | MS.gene74240 | 0.814574 | 1.44E-51 | -1.69E-46 |
| MS.gene055911 | MS.gene74240 | 0.816269 | 6.03E-52 | -1.69E-46 |
| MS.gene055941 | MS.gene74240 | 0.837699 | 4.46E-57 | -1.69E-46 |
| MS.gene056040 | MS.gene74240 | 0.841599 | 4.31E-58 | -1.69E-46 |
| MS.gene056166 | MS.gene74240 | 0.856009 | 4.30E-62 | -1.69E-46 |
| MS.gene056409 | MS.gene74240 | 0.802447 | 5.59E-49 | -1.69E-46 |
| MS.gene056449 | MS.gene74240 | 0.812991 | 3.21E-51 | -1.69E-46 |
| MS.gene056504 | MS.gene74240 | 0.814652 | 1.38E-51 | -1.69E-46 |
| MS.gene056610 | MS.gene74240 | 0.812085 | 5.06E-51 | -1.69E-46 |
| MS.gene057019 | MS.gene74240 | 0.807569 | 4.74E-50 | -1.69E-46 |
| MS.gene057048 | MS.gene74240 | 0.850312 | 1.84E-60 | -1.69E-46 |
| MS.gene057076 | MS.gene74240 | 0.835003 | 2.16E-56 | -1.69E-46 |
| MS.gene057289 | MS.gene74240 | 0.861935 | 7.23E-64 | -1.69E-46 |
| MS.gene057658 | MS.gene74240 | 0.808619 | 2.83E-50 | -1.69E-46 |
| MS.gene057734 | MS.gene74240 | 0.817853 | 2.66E-52 | -1.69E-46 |
| MS.gene057823 | MS.gene74240 | 0.81048 | 1.13E-50 | -1.69E-46 |
| MS.gene057831 | MS.gene74240 | 0.832569 | 8.77E-56 | -1.69E-46 |
| MS.gene057856 | MS.gene74240 | 0.801908 | 7.21E-49 | -1.69E-46 |
| MS.gene05787 | MS.gene74240 | 0.825406 | 4.77E-54 | -1.69E-46 |
| MS.gene058120 | MS.gene74240 | 0.836088 | 1.15E-56 | -1.69E-46 |
| MS.gene058130 | MS.gene74240 | 0.827978 | 1.16E-54 | -1.69E-46 |
| MS.gene058157 | MS.gene74240 | 0.816579 | 5.14E-52 | -1.69E-46 |
| MS.gene058338 | MS.gene74240 | 0.856973 | 2.24E-62 | -1.69E-46 |
| MS.gene058376 | MS.gene74240 | 0.805863 | 1.09E-49 | -1.69E-46 |
| MS.gene05837 | MS.gene74240 | 0.877589 | 5.57E-69 | -1.69E-46 |
| MS.gene058419 | MS.gene74240 | 0.815412 | 9.37E-52 | -1.69E-46 |
| MS.gene058444 | MS.gene74240 | 0.847609 | 1.04E-59 | -1.69E-46 |
| MS.gene058544 | MS.gene74240 | 0.809902 | 1.50E-50 | -1.69E-46 |
| MS.gene058700 | MS.gene74240 | 0.823597 | 1.27E-53 | -1.69E-46 |
| MS.gene058838 | MS.gene74240 | 0.82991 | 3.95E-55 | -1.69E-46 |
| MS.gene058948 | MS.gene74240 | 0.81889 | 1.55E-52 | -1.69E-46 |
| MS.gene059023 | MS.gene74240 | 0.860569 | 1.88E-63 | -1.69E-46 |
| MS.gene059303 | MS.gene74240 | 0.820045 | 8.44E-53 | -1.69E-46 |
| MS.gene05934 | MS.gene74240 | 0.801853 | 7.40E-49 | -1.69E-46 |
| MS.gene059367 | MS.gene74240 | 0.809331 | 1.99E-50 | -1.69E-46 |
| MS.gene059368 | MS.gene74240 | 0.822811 | 1.94E-53 | -1.69E-46 |
| MS.gene059667 | MS.gene74240 | 0.832643 | 8.41E-56 | -1.69E-46 |
| MS.gene059718 | MS.gene74240 | 0.837516 | 4.96E-57 | -1.69E-46 |
| MS.gene059756 | MS.gene74240 | 0.809998 | 1.43E-50 | -1.69E-46 |
| MS.gene059801 | MS.gene74240 | 0.830197 | 3.36E-55 | -1.69E-46 |
| MS.gene059902 | MS.gene74240 | 0.825794 | 3.86E-54 | -1.69E-46 |
| MS.gene05996 | MS.gene74240 | 0.815126 | 1.08E-51 | -1.69E-46 |
| MS.gene06000 | MS.gene74240 | 0.815845 | 7.50E-52 | -1.69E-46 |
| MS.gene060485 | MS.gene74240 | 0.824427 | 8.12E-54 | -1.69E-46 |
| MS.gene060593 | MS.gene74240 | -0.806915 | 6.52E-50 | -1.69E-46 |
| MS.gene060595 | MS.gene74240 | -0.826678 | 2.38E-54 | -1.69E-46 |
| MS.gene060762 | MS.gene74240 | 0.802001 | 6.90E-49 | -1.69E-46 |
| MS.gene060778 | MS.gene74240 | 0.835614 | 1.51E-56 | -1.69E-46 |
| MS.gene06077 | MS.gene74240 | 0.827938 | 1.19E-54 | -1.69E-46 |
| MS.gene060835 | MS.gene74240 | 0.818733 | 1.68E-52 | -1.69E-46 |
| MS.gene060837 | MS.gene74240 | 0.811313 | 7.45E-51 | -1.69E-46 |
| MS.gene06092 | MS.gene74240 | 0.824079 | 9.80E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74240.t1 | MTR_1g116540 | 88.732 | 426 | 37 | 8 | 5 | 426 | 3 | 421 | 0.0 | 733 |
| MS.gene74240.t1 | MTR_1g116540 | 88.000 | 425 | 40 | 8 | 5 | 425 | 3 | 420 | 0.0 | 723 |
| MS.gene74240.t1 | MTR_1g116540 | 85.484 | 434 | 44 | 9 | 5 | 426 | 3 | 429 | 0.0 | 707 |
| MS.gene74240.t1 | MTR_1g116540 | 84.758 | 433 | 47 | 9 | 5 | 425 | 3 | 428 | 0.0 | 699 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74240.t1 | AT2G43235 | 51.143 | 350 | 156 | 5 | 79 | 423 | 96 | 435 | 2.97e-114 | 342 |
Find 117 sgRNAs with CRISPR-Local
Find 230 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTACTTCAGTTCATATTAA+TGG | 0.156695 | 1.2:+86514863 | MS.gene74240:CDS |
| TGCATCTACCTACAATAATA+AGG | 0.213125 | 1.2:+86513395 | MS.gene74240:CDS |
| GGTGATGGTGGTGGTGGTAG+TGG | 0.222686 | 1.2:-86513100 | None:intergenic |
| CGTCAATTATGCAGAAATTC+TGG | 0.263143 | 1.2:+86514636 | MS.gene74240:CDS |
| CTACAATAATAAGGGTATTA+TGG | 0.279075 | 1.2:+86513404 | MS.gene74240:CDS |
| CGACTAACCATCTCCATTTC+AGG | 0.280124 | 1.2:-86516246 | None:intergenic |
| TATTGTTTGAATTGGTTTCT+AGG | 0.296767 | 1.2:+86513352 | MS.gene74240:CDS |
| GTGATGGTGGTGGTGGTAGT+GGG | 0.305278 | 1.2:-86513099 | None:intergenic |
| TGTATTCATCTTGTTCAGTT+AGG | 0.309416 | 1.2:-86513629 | None:intergenic |
| AAGCACCTTATGTTTCTCTT+TGG | 0.310733 | 1.2:+86516303 | MS.gene74240:CDS |
| TGAAACGAATTGACGAATAT+TGG | 0.311467 | 1.2:-86513184 | None:intergenic |
| AGAGGTGGTGCTGCTGTGAA+TGG | 0.313201 | 1.2:-86513481 | None:intergenic |
| CCTTCCACCTTGCACTTCAT+AGG | 0.346159 | 1.2:+86513285 | MS.gene74240:CDS |
| GAATAATAATAATAATTATA+AGG | 0.352036 | 1.2:+86513530 | MS.gene74240:CDS |
| CTGTTGAACCTACAACTATT+CGG | 0.355323 | 1.2:+86514670 | MS.gene74240:CDS |
| CATAATACCCTTATTATTGT+AGG | 0.355341 | 1.2:-86513403 | None:intergenic |
| GGCAAACATGTTGATGCTTT+AGG | 0.356797 | 1.2:+86515486 | MS.gene74240:CDS |
| GATTCTCAACAATTCCTTGC+TGG | 0.359006 | 1.2:+86514890 | MS.gene74240:CDS |
| GAGGTGGTGCTGCTGTGAAT+GGG | 0.360116 | 1.2:-86513480 | None:intergenic |
| TGTTATGGTCAAGAGTGAAT+AGG | 0.360148 | 1.2:-86513239 | None:intergenic |
| GTTATGGTCAAGAGTGAATA+GGG | 0.363866 | 1.2:-86513238 | None:intergenic |
| ATTAATAGTTGGCCACCATT+TGG | 0.367825 | 1.2:-86513577 | None:intergenic |
| TTCAAAGACCGCTTAATTGA+CGG | 0.375232 | 1.2:-86513507 | None:intergenic |
| GATAAGCATGGTTGTGGAAA+TGG | 0.383399 | 1.2:-86512997 | None:intergenic |
| TTTGAGGGTATTGTTTGAAT+TGG | 0.385299 | 1.2:+86513344 | MS.gene74240:CDS |
| TGTCTCCTTGCAGCCTGAAA+TGG | 0.390978 | 1.2:+86516233 | MS.gene74240:intron |
| TTAATAGTTGGCCACCATTT+GGG | 0.399245 | 1.2:-86513576 | None:intergenic |
| ATTTCCTCCCGAGGAATCTT+CGG | 0.417407 | 1.2:+86515542 | MS.gene74240:CDS |
| GCATTGGGATTATTAATAGT+TGG | 0.418090 | 1.2:-86513588 | None:intergenic |
| CTCAAAGGAAATTGCCCAAA+TGG | 0.421635 | 1.2:+86513562 | MS.gene74240:CDS |
| TGCAAGAGAAGCTCTTGGTT+TGG | 0.423356 | 1.2:+86516356 | MS.gene74240:CDS |
| ATCGCGGTATGCCTCTTTGC+CGG | 0.429399 | 1.2:-86513208 | None:intergenic |
| TGTTGAACCTACAACTATTC+GGG | 0.435983 | 1.2:+86514671 | MS.gene74240:CDS |
| ATTCTCAACAATTCCTTGCT+GGG | 0.439822 | 1.2:+86514891 | MS.gene74240:CDS |
| TGAAATGGAGATGGTTAGTC+GGG | 0.443445 | 1.2:+86516248 | MS.gene74240:CDS |
| GCATCTACCTACAATAATAA+GGG | 0.445427 | 1.2:+86513396 | MS.gene74240:CDS |
| AGGTGGTGCTGCTGTGAATG+GGG | 0.445776 | 1.2:-86513479 | None:intergenic |
| TTTGAGTTTATTGTGGCGTT+TGG | 0.448751 | 1.2:-86513067 | None:intergenic |
| ATCTGCAAAATAGGGTTAGC+AGG | 0.449273 | 1.2:-86516385 | None:intergenic |
| AGAGAAGGTGGTGATGGTGG+TGG | 0.455294 | 1.2:-86513109 | None:intergenic |
| ATATCAAAAGCATTGGCATT+GGG | 0.459121 | 1.2:-86513603 | None:intergenic |
| GGTGGAAAAGAGGTGGTTGT+TGG | 0.469675 | 1.2:+86513447 | MS.gene74240:CDS |
| GGTGGTGCTGCTGTGAATGG+GGG | 0.472454 | 1.2:-86513478 | None:intergenic |
| ATTCGTCAATTCGTTTCATC+CGG | 0.474810 | 1.2:+86513189 | MS.gene74240:CDS |
| GTATTATGGTGCGGAGAGAC+AGG | 0.476868 | 1.2:+86513418 | MS.gene74240:CDS |
| CAAAGATATGCCTTCTTCTA+CGG | 0.476956 | 1.2:+86515517 | MS.gene74240:CDS |
| CGAATATTGGAATGGAAGGA+AGG | 0.479468 | 1.2:-86513171 | None:intergenic |
| GACTAACTTGAATGATATCA+TGG | 0.480760 | 1.2:-86514148 | None:intergenic |
| TGATGGTGGTGGTGGTAGTG+GGG | 0.482464 | 1.2:-86513098 | None:intergenic |
| CAAAACAGAAAAGGCAATGA+TGG | 0.486059 | 1.2:-86513325 | None:intergenic |
| GAAGGTGGTGATGGTGGTGG+TGG | 0.486676 | 1.2:-86513106 | None:intergenic |
| AAGGAGTCCCGAATAGTTGT+AGG | 0.489624 | 1.2:-86514678 | None:intergenic |
| GCTGGGTTTGCTGAAAACAT+TGG | 0.494387 | 1.2:+86514908 | MS.gene74240:CDS |
| AGCAATTATCGACAGTAGAA+TGG | 0.497896 | 1.2:+86514106 | MS.gene74240:intron |
| GGAAGAAGCGGAGACGAGGC+GGG | 0.504022 | 1.2:-86513019 | None:intergenic |
| CAGAGAGTTTGAGTTTATTG+TGG | 0.507204 | 1.2:-86513074 | None:intergenic |
| GTGGTGCTGCTGTGAATGGG+GGG | 0.508609 | 1.2:-86513477 | None:intergenic |
| TTCGAGCTTGTGTTCAGAGA+AGG | 0.512806 | 1.2:-86513124 | None:intergenic |
| CATATCAAAAGCATTGGCAT+TGG | 0.512854 | 1.2:-86513604 | None:intergenic |
| CAATACCCTCAAAACAGAAA+AGG | 0.514129 | 1.2:-86513334 | None:intergenic |
| GGAACAGACCGAAGATTCCT+CGG | 0.515504 | 1.2:-86515550 | None:intergenic |
| TTGACGAATATTGGAATGGA+AGG | 0.523471 | 1.2:-86513175 | None:intergenic |
| CAGGAGTCTTGGTGGAAAAG+AGG | 0.524436 | 1.2:+86513437 | MS.gene74240:CDS |
| TTCAGAGAAGGTGGTGATGG+TGG | 0.525379 | 1.2:-86513112 | None:intergenic |
| CTGAACAAGATGAATACAAG+AGG | 0.525744 | 1.2:+86513634 | MS.gene74240:CDS |
| AGGCGGGATAAGCATGGTTG+TGG | 0.526418 | 1.2:-86513003 | None:intergenic |
| ATTAACTGATGCTCGATACA+AGG | 0.536295 | 1.2:-86514697 | None:intergenic |
| GGGATTGCAAGAGAAGCTCT+TGG | 0.537168 | 1.2:+86516351 | MS.gene74240:CDS |
| GCAAAAGACAAGAGCGTGTG+CGG | 0.541792 | 1.2:-86514979 | None:intergenic |
| TGGTTTCTAGGTTTGCGTCA+TGG | 0.542864 | 1.2:+86513364 | MS.gene74240:CDS |
| CAAAAGACAAGAGCGTGTGC+GGG | 0.544785 | 1.2:-86514978 | None:intergenic |
| CGGAGAGACAGGAGTCTTGG+TGG | 0.547028 | 1.2:+86513429 | MS.gene74240:CDS |
| CGAATTGACGAATATTGGAA+TGG | 0.548654 | 1.2:-86513179 | None:intergenic |
| TATTGTGGCGTTTGGTGCGG+CGG | 0.549812 | 1.2:-86513059 | None:intergenic |
| TTTGCAGTGAGGACAGTCAC+GGG | 0.552218 | 1.2:+86516331 | MS.gene74240:CDS |
| GTGCGGAGAGACAGGAGTCT+TGG | 0.557171 | 1.2:+86513426 | MS.gene74240:CDS |
| ATAAGGAAATTGTGTCTCAA+AGG | 0.558092 | 1.2:+86513547 | MS.gene74240:CDS |
| TAGGTCCATATCAAAAGCAT+TGG | 0.559057 | 1.2:-86513610 | None:intergenic |
| CTGAAATGGAGATGGTTAGT+CGG | 0.564106 | 1.2:+86516247 | MS.gene74240:CDS |
| TGAACTGAAGTAGAGTAAGT+TGG | 0.565051 | 1.2:-86514854 | None:intergenic |
| CAAAGGAAGAAGCGGAGACG+AGG | 0.566667 | 1.2:-86513023 | None:intergenic |
| GTGTTCAGAGAAGGTGGTGA+TGG | 0.568282 | 1.2:-86513115 | None:intergenic |
| GAATATTGGAATGGAAGGAA+GGG | 0.570151 | 1.2:-86513170 | None:intergenic |
| TTCAGTTCATATTAATGGCG+AGG | 0.571469 | 1.2:+86514868 | MS.gene74240:CDS |
| GATGCTTACAGACTCGTTCG+AGG | 0.571898 | 1.2:+86513657 | MS.gene74240:CDS |
| CTTAATTGACGGCGCAGAGG+TGG | 0.577365 | 1.2:-86513496 | None:intergenic |
| GCGGCGACAGCGACGTACAA+AGG | 0.580908 | 1.2:-86513040 | None:intergenic |
| AACTTGAATGATATCATGGT+CGG | 0.586857 | 1.2:-86514144 | None:intergenic |
| AGGAAGAAGCGGAGACGAGG+CGG | 0.588432 | 1.2:-86513020 | None:intergenic |
| GAGCTTGTGTTCAGAGAAGG+TGG | 0.588582 | 1.2:-86513121 | None:intergenic |
| GAGGAAATATCCGTAGAAGA+AGG | 0.589817 | 1.2:-86515527 | None:intergenic |
| CTTGCAGCCTGAAATGGAGA+TGG | 0.589877 | 1.2:+86516239 | MS.gene74240:intron |
| GGAAGGAAGGGAAGATTGTG+AGG | 0.590735 | 1.2:-86513158 | None:intergenic |
| CTTTACCAAAGAGAAACATA+AGG | 0.591688 | 1.2:-86516308 | None:intergenic |
| TTATAGGCATTGGAAATGCA+AGG | 0.604747 | 1.2:+86515465 | MS.gene74240:intron |
| CCTATGAAGTGCAAGGTGGA+AGG | 0.605754 | 1.2:-86513285 | None:intergenic |
| GAACAGACCGAAGATTCCTC+GGG | 0.606284 | 1.2:-86515549 | None:intergenic |
| GAAGATTGTGAGGTCTATGA+CGG | 0.607214 | 1.2:-86513148 | None:intergenic |
| GTTTGCAGTGAGGACAGTCA+CGG | 0.610114 | 1.2:+86516330 | MS.gene74240:CDS |
| AGCTGCAGACACAATTGTTG+CGG | 0.612752 | 1.2:-86514948 | None:intergenic |
| ATTCGTTTCATCCGGCAAAG+AGG | 0.619371 | 1.2:+86513197 | MS.gene74240:CDS |
| AAAGGAAATTGCCCAAATGG+TGG | 0.626680 | 1.2:+86513565 | MS.gene74240:CDS |
| GCGACGTACAAAGGAAGAAG+CGG | 0.627830 | 1.2:-86513031 | None:intergenic |
| TCTACGGATATTTCCTCCCG+AGG | 0.628715 | 1.2:+86515533 | MS.gene74240:CDS |
| CCGCTTAATTGACGGCGCAG+AGG | 0.630008 | 1.2:-86513499 | None:intergenic |
| GAGACGAGGCGGGATAAGCA+TGG | 0.633362 | 1.2:-86513009 | None:intergenic |
| TGAAGTTCCTATGAAGTGCA+AGG | 0.638935 | 1.2:-86513292 | None:intergenic |
| CCTCTGCGCCGTCAATTAAG+CGG | 0.643562 | 1.2:+86513499 | MS.gene74240:CDS |
| TGAACAAGATGAATACAAGA+GGG | 0.644744 | 1.2:+86513635 | MS.gene74240:CDS |
| GTTTATTGTGGCGTTTGGTG+CGG | 0.654882 | 1.2:-86513062 | None:intergenic |
| GAGTCTTGGTGGAAAAGAGG+TGG | 0.656446 | 1.2:+86513440 | MS.gene74240:CDS |
| ATAATAAGGGTATTATGGTG+CGG | 0.664590 | 1.2:+86513409 | MS.gene74240:CDS |
| CTTTGGTAAAGTTTGCAGTG+AGG | 0.666887 | 1.2:+86516320 | MS.gene74240:CDS |
| CAGACCGAAGATTCCTCGGG+AGG | 0.694458 | 1.2:-86515546 | None:intergenic |
| TGAATAGGGTCTGTAAATCG+CGG | 0.700229 | 1.2:-86513224 | None:intergenic |
| AGTTCCTATGAAGTGCAAGG+TGG | 0.710148 | 1.2:-86513289 | None:intergenic |
| GAAATGGAGATGGTTAGTCG+GGG | 0.713332 | 1.2:+86516249 | MS.gene74240:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATCATTAAAATATCTAAAA+TGG | - | chr1.2:86515781-86515800 | None:intergenic | 10.0% |
| !! | CAATTAGTATATTTATTAAA+AGG | - | chr1.2:86514398-86514417 | None:intergenic | 10.0% |
| !!! | AAATCATTTTCTATAATAAA+TGG | + | chr1.2:86514558-86514577 | MS.gene74240:intron | 10.0% |
| !!! | CTTTTAATAAATATACTAAT+TGG | + | chr1.2:86514396-86514415 | MS.gene74240:intron | 10.0% |
| !! | AAATATTCATATAAGAAAAG+TGG | - | chr1.2:86515616-86515635 | None:intergenic | 15.0% |
| !! | AATATTCATATAAGAAAAGT+GGG | - | chr1.2:86515615-86515634 | None:intergenic | 15.0% |
| !! | TATTTGCAAATTATTGTTTA+AGG | - | chr1.2:86515574-86515593 | None:intergenic | 15.0% |
| !! | TTATCCTTTATTATTAACAA+CGG | + | chr1.2:86515699-86515718 | MS.gene74240:intron | 15.0% |
| !!! | ATATCTAAAATGGATAAATA+TGG | - | chr1.2:86515771-86515790 | None:intergenic | 15.0% |
| !!! | GTTAAATATGAATATTTTCA+AGG | + | chr1.2:86515215-86515234 | MS.gene74240:intron | 15.0% |
| !!! | TATTAAAAGGAATTAAGTTT+TGG | - | chr1.2:86514385-86514404 | None:intergenic | 15.0% |
| !!! | TTTTTGGTTTTTTCAATTAT+AGG | + | chr1.2:86515449-86515468 | MS.gene74240:intron | 15.0% |
| !! | AATACTCCATTAAAATTCAT+GGG | + | chr1.2:86515426-86515445 | MS.gene74240:intron | 20.0% |
| !! | ACAACATTTAAGAAAGATTT+AGG | - | chr1.2:86515176-86515195 | None:intergenic | 20.0% |
| !! | TAATTCTTTATGCATAAATG+AGG | + | chr1.2:86515841-86515860 | MS.gene74240:intron | 20.0% |
| !! | TTCAATAGCTAATTAATCTA+AGG | - | chr1.2:86514198-86514217 | None:intergenic | 20.0% |
| !!! | AAAGAAAACGTTTGAAATTT+CGG | + | chr1.2:86515978-86515997 | MS.gene74240:intron | 20.0% |
| !!! | TACTGATGTGAAATTTTTTT+TGG | + | chr1.2:86514594-86514613 | MS.gene74240:intron | 20.0% |
| ! | AACTCCGTTGTTAATAATAA+AGG | - | chr1.2:86515706-86515725 | None:intergenic | 25.0% |
| ! | AATAATAAAGGATAACTGTG+AGG | - | chr1.2:86515694-86515713 | None:intergenic | 25.0% |
| ! | AATTGAGAAACTTTAATGAG+TGG | - | chr1.2:86515920-86515939 | None:intergenic | 25.0% |
| ! | ATGAATGAATGAATGAATGA+AGG | - | chr1.2:86513703-86513722 | None:intergenic | 25.0% |
| ! | ATTGCTATACATGTTTGAAA+TGG | + | chr1.2:86516089-86516108 | MS.gene74240:intron | 25.0% |
| ! | CATAATACCCTTATTATTGT+AGG | - | chr1.2:86513406-86513425 | None:intergenic | 25.0% |
| ! | CTCTCTAATTGTACTTATTT+GGG | + | chr1.2:86516209-86516228 | MS.gene74240:intron | 25.0% |
| ! | GAATACTCCATTAAAATTCA+TGG | + | chr1.2:86515425-86515444 | MS.gene74240:intron | 25.0% |
| ! | TAAGGATGAAGTAAATGAAT+GGG | - | chr1.2:86514180-86514199 | None:intergenic | 25.0% |
| ! | TATAGAGAACAAAACACATT+GGG | + | chr1.2:86516030-86516049 | MS.gene74240:intron | 25.0% |
| ! | TCTACTTCAGTTCATATTAA+TGG | + | chr1.2:86514863-86514882 | MS.gene74240:CDS | 25.0% |
| ! | TCTCTAATTGTACTTATTTG+GGG | + | chr1.2:86516210-86516229 | MS.gene74240:intron | 25.0% |
| ! | TCTTTCTTGTCTTGTATTAT+AGG | + | chr1.2:86514000-86514019 | MS.gene74240:intron | 25.0% |
| ! | TGAAAATTTCTCATGTTAGT+TGG | - | chr1.2:86513855-86513874 | None:intergenic | 25.0% |
| ! | TGAATGAATGAATGAATGAA+GGG | - | chr1.2:86513702-86513721 | None:intergenic | 25.0% |
| ! | TTACTCTTAATCTTATGATC+TGG | + | chr1.2:86515019-86515038 | MS.gene74240:intron | 25.0% |
| !! | AAATGATGACTCTTTTGTTA+TGG | - | chr1.2:86513257-86513276 | None:intergenic | 25.0% |
| !! | AAGAAAACGTTTGAAATTTC+GGG | + | chr1.2:86515979-86515998 | MS.gene74240:intron | 25.0% |
| !! | CAAAAACCCATGAATTTTAA+TGG | - | chr1.2:86515435-86515454 | None:intergenic | 25.0% |
| !! | CAAGGTTATATTTTCTATGA+TGG | + | chr1.2:86515233-86515252 | MS.gene74240:intron | 25.0% |
| !! | CATTAAAATTCATGGGTTTT+TGG | + | chr1.2:86515433-86515452 | MS.gene74240:intron | 25.0% |
| !! | TAAGTTGCAAGTTGAATTAA+AGG | - | chr1.2:86514072-86514091 | None:intergenic | 25.0% |
| !! | TATTGTTTGAATTGGTTTCT+AGG | + | chr1.2:86513352-86513371 | MS.gene74240:CDS | 25.0% |
| !!! | ATAAGCATTAGATGTTGTTT+TGG | + | chr1.2:86516125-86516144 | MS.gene74240:intron | 25.0% |
| !!! | CTACAATAATAAGGGTATTA+TGG | + | chr1.2:86513404-86513423 | MS.gene74240:CDS | 25.0% |
| !!! | GTTTTTTCAATTATAGGCAT+TGG | + | chr1.2:86515455-86515474 | MS.gene74240:intron | 25.0% |
| AACTTGAATGATATCATGGT+CGG | - | chr1.2:86514147-86514166 | None:intergenic | 30.0% | |
| AAGGATGAAGTAAATGAATG+GGG | - | chr1.2:86514179-86514198 | None:intergenic | 30.0% | |
| AATGAGGAGTAAATACTTTC+TGG | + | chr1.2:86515857-86515876 | MS.gene74240:intron | 30.0% | |
| AATTCATAAATCAGCAGACA+AGG | - | chr1.2:86516180-86516199 | None:intergenic | 30.0% | |
| ACATATCTACGAGAGTAAAT+TGG | - | chr1.2:86513825-86513844 | None:intergenic | 30.0% | |
| ACATCTAATGCTTATCTCTA+TGG | - | chr1.2:86516120-86516139 | None:intergenic | 30.0% | |
| ACTCAAATGAAAGAACTAGA+TGG | + | chr1.2:86515258-86515277 | MS.gene74240:intron | 30.0% | |
| ATAAGGAAATTGTGTCTCAA+AGG | + | chr1.2:86513547-86513566 | MS.gene74240:CDS | 30.0% | |
| ATGAGGAGTAAATACTTTCT+GGG | + | chr1.2:86515858-86515877 | MS.gene74240:intron | 30.0% | |
| CAATTTAGAGAGCTTACAAT+TGG | - | chr1.2:86515302-86515321 | None:intergenic | 30.0% | |
| CTAAGGATGAAGTAAATGAA+TGG | - | chr1.2:86514181-86514200 | None:intergenic | 30.0% | |
| CTCAAATGAAAGAACTAGAT+GGG | + | chr1.2:86515259-86515278 | MS.gene74240:intron | 30.0% | |
| CTTCCTAGAAAAAGAGTTAT+CGG | - | chr1.2:86515387-86515406 | None:intergenic | 30.0% | |
| CTTTACCAAAGAGAAACATA+AGG | - | chr1.2:86516311-86516330 | None:intergenic | 30.0% | |
| GACTAACTTGAATGATATCA+TGG | - | chr1.2:86514151-86514170 | None:intergenic | 30.0% | |
| GCATCTACCTACAATAATAA+GGG | + | chr1.2:86513396-86513415 | MS.gene74240:CDS | 30.0% | |
| GCATTGGGATTATTAATAGT+TGG | - | chr1.2:86513591-86513610 | None:intergenic | 30.0% | |
| GCTCTCTAATTGTACTTATT+TGG | + | chr1.2:86516208-86516227 | MS.gene74240:intron | 30.0% | |
| GTATAGAGAACAAAACACAT+TGG | + | chr1.2:86516029-86516048 | MS.gene74240:intron | 30.0% | |
| GTTCTTGGCTATTAGATATT+TGG | + | chr1.2:86515741-86515760 | MS.gene74240:intron | 30.0% | |
| TAAGCTCTCTAAATTGATCA+GGG | + | chr1.2:86515306-86515325 | MS.gene74240:intron | 30.0% | |
| TCAACATCAAAGTAAACATG+AGG | - | chr1.2:86513760-86513779 | None:intergenic | 30.0% | |
| TCTATATCTACACAAAACCA+CGG | - | chr1.2:86514439-86514458 | None:intergenic | 30.0% | |
| TGAAACGAATTGACGAATAT+TGG | - | chr1.2:86513187-86513206 | None:intergenic | 30.0% | |
| TGAACAAGATGAATACAAGA+GGG | + | chr1.2:86513635-86513654 | MS.gene74240:CDS | 30.0% | |
| TGCATCTACCTACAATAATA+AGG | + | chr1.2:86513395-86513414 | MS.gene74240:CDS | 30.0% | |
| TGTAACTACTAGCATTCTAA+AGG | + | chr1.2:86515086-86515105 | MS.gene74240:intron | 30.0% | |
| TGTATTCATCTTGTTCAGTT+AGG | - | chr1.2:86513632-86513651 | None:intergenic | 30.0% | |
| TGTTCTCTTTATTCCTTACT+CGG | + | chr1.2:86515642-86515661 | MS.gene74240:intron | 30.0% | |
| TTAATGAGTGGTTATACAGA+TGG | - | chr1.2:86515908-86515927 | None:intergenic | 30.0% | |
| ! | AAGGCAGTTATATTTTCACT+CGG | + | chr1.2:86515105-86515124 | MS.gene74240:intron | 30.0% |
| ! | AGAAAACGTTTGAAATTTCG+GGG | + | chr1.2:86515980-86515999 | MS.gene74240:intron | 30.0% |
| ! | CATTTAAGTTACACACTTTC+AGG | - | chr1.2:86515348-86515367 | None:intergenic | 30.0% |
| ! | TAATGATTTGTCTTTCACTC+CGG | + | chr1.2:86515793-86515812 | MS.gene74240:intron | 30.0% |
| ! | TTTTGTTCTCTATACTACAG+AGG | - | chr1.2:86516024-86516043 | None:intergenic | 30.0% |
| !! | AATCTTGTCTTTTAGCCTTT+GGG | + | chr1.2:86515043-86515062 | MS.gene74240:intron | 30.0% |
| !! | ATAATAAGGGTATTATGGTG+CGG | + | chr1.2:86513409-86513428 | MS.gene74240:CDS | 30.0% |
| !! | ATATCAAAAGCATTGGCATT+GGG | - | chr1.2:86513606-86513625 | None:intergenic | 30.0% |
| !! | ATTTTAATGGAGTATTCACG+TGG | - | chr1.2:86515422-86515441 | None:intergenic | 30.0% |
| !! | TAATCTTGTCTTTTAGCCTT+TGG | + | chr1.2:86515042-86515061 | MS.gene74240:intron | 30.0% |
| !! | TTTGAGGGTATTGTTTGAAT+TGG | + | chr1.2:86513344-86513363 | MS.gene74240:CDS | 30.0% |
| !! | TTTTAATGGAGTATTCACGT+GGG | - | chr1.2:86515421-86515440 | None:intergenic | 30.0% |
| AAATCCTATCATACCGAGTA+AGG | - | chr1.2:86515658-86515677 | None:intergenic | 35.0% | |
| AAGCACCTTATGTTTCTCTT+TGG | + | chr1.2:86516303-86516322 | MS.gene74240:CDS | 35.0% | |
| ACAATCTAGTAGAAACCCAA+AGG | - | chr1.2:86515061-86515080 | None:intergenic | 35.0% | |
| ACATGAGAGTTGAAAGTAAG+AGG | - | chr1.2:86513933-86513952 | None:intergenic | 35.0% | |
| ACCATTTATGTCAGTGTTCT+TGG | + | chr1.2:86515726-86515745 | MS.gene74240:intron | 35.0% | |
| ACGAGTGAATTTACGTTTAC+CGG | - | chr1.2:86515815-86515834 | None:intergenic | 35.0% | |
| AGAGTATAGTAAAGGACCAA+AGG | - | chr1.2:86514293-86514312 | None:intergenic | 35.0% | |
| AGCAATTATCGACAGTAGAA+TGG | + | chr1.2:86514106-86514125 | MS.gene74240:intron | 35.0% | |
| ATTAACTGATGCTCGATACA+AGG | - | chr1.2:86514700-86514719 | None:intergenic | 35.0% | |
| ATTAATAGTTGGCCACCATT+TGG | - | chr1.2:86513580-86513599 | None:intergenic | 35.0% | |
| ATTCGTCAATTCGTTTCATC+CGG | + | chr1.2:86513189-86513208 | MS.gene74240:CDS | 35.0% | |
| ATTCTACTGTCGATAATTGC+TGG | - | chr1.2:86514107-86514126 | None:intergenic | 35.0% | |
| ATTCTCAACAATTCCTTGCT+GGG | + | chr1.2:86514891-86514910 | MS.gene74240:CDS | 35.0% | |
| CAAAACAGAAAAGGCAATGA+TGG | - | chr1.2:86513328-86513347 | None:intergenic | 35.0% | |
| CAAAGATATGCCTTCTTCTA+CGG | + | chr1.2:86515517-86515536 | MS.gene74240:CDS | 35.0% | |
| CAATACCCTCAAAACAGAAA+AGG | - | chr1.2:86513337-86513356 | None:intergenic | 35.0% | |
| CGAATTGACGAATATTGGAA+TGG | - | chr1.2:86513182-86513201 | None:intergenic | 35.0% | |
| CGTCAATTATGCAGAAATTC+TGG | + | chr1.2:86514636-86514655 | MS.gene74240:CDS | 35.0% | |
| CTGAACAAGATGAATACAAG+AGG | + | chr1.2:86513634-86513653 | MS.gene74240:CDS | 35.0% | |
| CTGTTGAACCTACAACTATT+CGG | + | chr1.2:86514670-86514689 | MS.gene74240:CDS | 35.0% | |
| GAATATTGGAATGGAAGGAA+GGG | - | chr1.2:86513173-86513192 | None:intergenic | 35.0% | |
| GAGTATAGTAAAGGACCAAA+GGG | - | chr1.2:86514292-86514311 | None:intergenic | 35.0% | |
| GTAAGCTCTCTAAATTGATC+AGG | + | chr1.2:86515305-86515324 | MS.gene74240:intron | 35.0% | |
| GTTATGGTCAAGAGTGAATA+GGG | - | chr1.2:86513241-86513260 | None:intergenic | 35.0% | |
| TAATGCTTATCTCTATGGAG+TGG | - | chr1.2:86516115-86516134 | None:intergenic | 35.0% | |
| TATCTACGAGAGTAAATTGG+AGG | - | chr1.2:86513822-86513841 | None:intergenic | 35.0% | |
| TATTCCTTACTCGGTATGAT+AGG | + | chr1.2:86515651-86515670 | MS.gene74240:intron | 35.0% | |
| TGAACTGAAGTAGAGTAAGT+TGG | - | chr1.2:86514857-86514876 | None:intergenic | 35.0% | |
| TGAGGAGTAAATACTTTCTG+GGG | + | chr1.2:86515859-86515878 | MS.gene74240:intron | 35.0% | |
| TGTTATGGTCAAGAGTGAAT+AGG | - | chr1.2:86513242-86513261 | None:intergenic | 35.0% | |
| TGTTGAACCTACAACTATTC+GGG | + | chr1.2:86514671-86514690 | MS.gene74240:CDS | 35.0% | |
| TTAATAGTTGGCCACCATTT+GGG | - | chr1.2:86513579-86513598 | None:intergenic | 35.0% | |
| TTACTCGGTATGATAGGATT+TGG | + | chr1.2:86515657-86515676 | MS.gene74240:intron | 35.0% | |
| TTCAAAGACCGCTTAATTGA+CGG | - | chr1.2:86513510-86513529 | None:intergenic | 35.0% | |
| TTCAGTTCATATTAATGGCG+AGG | + | chr1.2:86514868-86514887 | MS.gene74240:CDS | 35.0% | |
| TTGACGAATATTGGAATGGA+AGG | - | chr1.2:86513178-86513197 | None:intergenic | 35.0% | |
| ! | ATTTTCACTCGGAATACTGT+TGG | + | chr1.2:86515116-86515135 | MS.gene74240:intron | 35.0% |
| ! | CAATGCCAATGCTTTTGATA+TGG | + | chr1.2:86513605-86513624 | MS.gene74240:CDS | 35.0% |
| ! | CAGAGAGTTTGAGTTTATTG+TGG | - | chr1.2:86513077-86513096 | None:intergenic | 35.0% |
| ! | CTTTGATGTTGATTGAGTGA+AGG | + | chr1.2:86513768-86513787 | MS.gene74240:intron | 35.0% |
| ! | TAGGTCCATATCAAAAGCAT+TGG | - | chr1.2:86513613-86513632 | None:intergenic | 35.0% |
| ! | TCATTGCCTTTTCTGTTTTG+AGG | + | chr1.2:86513328-86513347 | MS.gene74240:CDS | 35.0% |
| ! | TTTCTGGGGAAATTTAGATG+AGG | + | chr1.2:86515873-86515892 | MS.gene74240:intron | 35.0% |
| ! | TTTGAGTTTATTGTGGCGTT+TGG | - | chr1.2:86513070-86513089 | None:intergenic | 35.0% |
| !! | CATATCAAAAGCATTGGCAT+TGG | - | chr1.2:86513607-86513626 | None:intergenic | 35.0% |
| !! | CATTGCCTTTTCTGTTTTGA+GGG | + | chr1.2:86513329-86513348 | MS.gene74240:CDS | 35.0% |
| !! | TTATAGGCATTGGAAATGCA+AGG | + | chr1.2:86515465-86515484 | MS.gene74240:intron | 35.0% |
| !!! | AGATGTTGTTTTGGATGAGT+AGG | + | chr1.2:86516134-86516153 | MS.gene74240:intron | 35.0% |
| AAAGGAAATTGCCCAAATGG+TGG | + | chr1.2:86513565-86513584 | MS.gene74240:CDS | 40.0% | |
| CCTAGAAAAAGAGTTATCGG+AGG | - | chr1.2:86515384-86515403 | None:intergenic | 40.0% | |
| CGAATATTGGAATGGAAGGA+AGG | - | chr1.2:86513174-86513193 | None:intergenic | 40.0% | |
| CTCAAAGGAAATTGCCCAAA+TGG | + | chr1.2:86513562-86513581 | MS.gene74240:CDS | 40.0% | |
| CTGAAATGGAGATGGTTAGT+CGG | + | chr1.2:86516247-86516266 | MS.gene74240:CDS | 40.0% | |
| CTTTGGTAAAGTTTGCAGTG+AGG | + | chr1.2:86516320-86516339 | MS.gene74240:CDS | 40.0% | |
| GAAGATTGTGAGGTCTATGA+CGG | - | chr1.2:86513151-86513170 | None:intergenic | 40.0% | |
| GAGGAAATATCCGTAGAAGA+AGG | - | chr1.2:86515530-86515549 | None:intergenic | 40.0% | |
| GATAAGCATGGTTGTGGAAA+TGG | - | chr1.2:86513000-86513019 | None:intergenic | 40.0% | |
| GATTCTCAACAATTCCTTGC+TGG | + | chr1.2:86514890-86514909 | MS.gene74240:CDS | 40.0% | |
| GCCAAGAACACTGACATAAA+TGG | - | chr1.2:86515730-86515749 | None:intergenic | 40.0% | |
| GCTACCTAGCAGTAAAGAAA+GGG | - | chr1.2:86514775-86514794 | None:intergenic | 40.0% | |
| GCTGTGGTAGAGTATAGTAA+AGG | - | chr1.2:86514301-86514320 | None:intergenic | 40.0% | |
| GGCAAACATGTTGATGCTTT+AGG | + | chr1.2:86515486-86515505 | MS.gene74240:CDS | 40.0% | |
| TATCTTCTATGCTGTAGCTG+TGG | - | chr1.2:86514317-86514336 | None:intergenic | 40.0% | |
| TGAAGTTCCTATGAAGTGCA+AGG | - | chr1.2:86513295-86513314 | None:intergenic | 40.0% | |
| TGAATAGGGTCTGTAAATCG+CGG | - | chr1.2:86513227-86513246 | None:intergenic | 40.0% | |
| TGCTACCTAGCAGTAAAGAA+AGG | - | chr1.2:86514776-86514795 | None:intergenic | 40.0% | |
| TTGAAATTTCGGGGAAGTGA+CGG | + | chr1.2:86515989-86516008 | MS.gene74240:intron | 40.0% | |
| ! | ATGGTCGGATATGTCTTTTG+CGG | - | chr1.2:86514132-86514151 | None:intergenic | 40.0% |
| ! | CATAAAGATACTTGCTACCG+TGG | + | chr1.2:86514419-86514438 | MS.gene74240:intron | 40.0% |
| ! | CCTCCGATAACTCTTTTTCT+AGG | + | chr1.2:86515381-86515400 | MS.gene74240:intron | 40.0% |
| ! | TGAAATGGAGATGGTTAGTC+GGG | + | chr1.2:86516248-86516267 | MS.gene74240:CDS | 40.0% |
| !! | GTTTTGGATGAGTAGGTAGA+GGG | + | chr1.2:86516141-86516160 | MS.gene74240:intron | 40.0% |
| !! | TGTTTTGGATGAGTAGGTAG+AGG | + | chr1.2:86516140-86516159 | MS.gene74240:intron | 40.0% |
| !!! | TTGTTTTAGATGCTTGCAGC+AGG | + | chr1.2:86514721-86514740 | MS.gene74240:CDS | 40.0% |
| AAGGAGTCCCGAATAGTTGT+AGG | - | chr1.2:86514681-86514700 | None:intergenic | 45.0% | |
| AGCTGCAGACACAATTGTTG+CGG | - | chr1.2:86514951-86514970 | None:intergenic | 45.0% | |
| AGTTCCTATGAAGTGCAAGG+TGG | - | chr1.2:86513292-86513311 | None:intergenic | 45.0% | |
| ATTCGTTTCATCCGGCAAAG+AGG | + | chr1.2:86513197-86513216 | MS.gene74240:CDS | 45.0% | |
| ATTTCCTCCCGAGGAATCTT+CGG | + | chr1.2:86515542-86515561 | MS.gene74240:CDS | 45.0% | |
| CGACTAACCATCTCCATTTC+AGG | - | chr1.2:86516249-86516268 | None:intergenic | 45.0% | |
| CTATGCAGTTGCACTAACTC+AGG | - | chr1.2:86514352-86514371 | None:intergenic | 45.0% | |
| GAGATATCTTTCACGCCCTT+TGG | + | chr1.2:86514274-86514293 | MS.gene74240:intron | 45.0% | |
| GTGTCCCTTTCTTTACTGCT+AGG | + | chr1.2:86514768-86514787 | MS.gene74240:intron | 45.0% | |
| TGCAAGAGAAGCTCTTGGTT+TGG | + | chr1.2:86516356-86516375 | MS.gene74240:CDS | 45.0% | |
| TTCGAGCTTGTGTTCAGAGA+AGG | - | chr1.2:86513127-86513146 | None:intergenic | 45.0% | |
| ! | CTCTTGTCTTTTGCAGGCTT+GGG | + | chr1.2:86514988-86515007 | MS.gene74240:CDS | 45.0% |
| ! | GAAATGGAGATGGTTAGTCG+GGG | + | chr1.2:86516249-86516268 | MS.gene74240:CDS | 45.0% |
| ! | GTTTATTGTGGCGTTTGGTG+CGG | - | chr1.2:86513065-86513084 | None:intergenic | 45.0% |
| ! | TGGTTTCTAGGTTTGCGTCA+TGG | + | chr1.2:86513364-86513383 | MS.gene74240:CDS | 45.0% |
| ! | TGTTTTCAGCAAACCCAGCA+AGG | - | chr1.2:86514907-86514926 | None:intergenic | 45.0% |
| ! | TTGCGGCACGAACATTTTCA+AGG | - | chr1.2:86514934-86514953 | None:intergenic | 45.0% |
| !! | GCTGGGTTTGCTGAAAACAT+TGG | + | chr1.2:86514908-86514927 | MS.gene74240:CDS | 45.0% |
| !! | GAATAATAATAATAATTATA+AGG | + | chr1.2:86513530-86513549 | MS.gene74240:CDS | 5.0% |
| AAAGAAAGGGACACAGACGC+AGG | - | chr1.2:86514762-86514781 | None:intergenic | 50.0% | |
| CAGGAGTCTTGGTGGAAAAG+AGG | + | chr1.2:86513437-86513456 | MS.gene74240:CDS | 50.0% | |
| CATCTCCATTTCAGGCTGCA+AGG | - | chr1.2:86516241-86516260 | None:intergenic | 50.0% | |
| CCTATGAAGTGCAAGGTGGA+AGG | - | chr1.2:86513288-86513307 | None:intergenic | 50.0% | |
| CCTTCCACCTTGCACTTCAT+AGG | + | chr1.2:86513285-86513304 | MS.gene74240:CDS | 50.0% | |
| CTTGCAGCCTGAAATGGAGA+TGG | + | chr1.2:86516239-86516258 | MS.gene74240:intron | 50.0% | |
| GAACAGACCGAAGATTCCTC+GGG | - | chr1.2:86515552-86515571 | None:intergenic | 50.0% | |
| GAGCTTGTGTTCAGAGAAGG+TGG | - | chr1.2:86513124-86513143 | None:intergenic | 50.0% | |
| GAGTCTTGGTGGAAAAGAGG+TGG | + | chr1.2:86513440-86513459 | MS.gene74240:CDS | 50.0% | |
| GATGCTTACAGACTCGTTCG+AGG | + | chr1.2:86513657-86513676 | MS.gene74240:CDS | 50.0% | |
| GCGACGTACAAAGGAAGAAG+CGG | - | chr1.2:86513034-86513053 | None:intergenic | 50.0% | |
| GGAACAGACCGAAGATTCCT+CGG | - | chr1.2:86515553-86515572 | None:intergenic | 50.0% | |
| GGAAGGAAGGGAAGATTGTG+AGG | - | chr1.2:86513161-86513180 | None:intergenic | 50.0% | |
| GGGATTGCAAGAGAAGCTCT+TGG | + | chr1.2:86516351-86516370 | MS.gene74240:CDS | 50.0% | |
| GGTGGAAAAGAGGTGGTTGT+TGG | + | chr1.2:86513447-86513466 | MS.gene74240:CDS | 50.0% | |
| GTATTATGGTGCGGAGAGAC+AGG | + | chr1.2:86513418-86513437 | MS.gene74240:CDS | 50.0% | |
| GTGTTCAGAGAAGGTGGTGA+TGG | - | chr1.2:86513118-86513137 | None:intergenic | 50.0% | |
| GTTTGCAGTGAGGACAGTCA+CGG | + | chr1.2:86516330-86516349 | MS.gene74240:CDS | 50.0% | |
| TCTACGGATATTTCCTCCCG+AGG | + | chr1.2:86515533-86515552 | MS.gene74240:CDS | 50.0% | |
| TGTCTCCTTGCAGCCTGAAA+TGG | + | chr1.2:86516233-86516252 | MS.gene74240:intron | 50.0% | |
| TTTGCAGTGAGGACAGTCAC+GGG | + | chr1.2:86516331-86516350 | MS.gene74240:CDS | 50.0% | |
| ! | CAAAAGACAAGAGCGTGTGC+GGG | - | chr1.2:86514981-86515000 | None:intergenic | 50.0% |
| ! | CACACGCTCTTGTCTTTTGC+AGG | + | chr1.2:86514982-86515001 | MS.gene74240:CDS | 50.0% |
| ! | GCAAAAGACAAGAGCGTGTG+CGG | - | chr1.2:86514982-86515001 | None:intergenic | 50.0% |
| ! | GCTCTTGTCTTTTGCAGGCT+TGG | + | chr1.2:86514987-86515006 | MS.gene74240:CDS | 50.0% |
| !! | TTCAGAGAAGGTGGTGATGG+TGG | - | chr1.2:86513115-86513134 | None:intergenic | 50.0% |
| AGGCGGGATAAGCATGGTTG+TGG | - | chr1.2:86513006-86513025 | None:intergenic | 55.0% | |
| ATCGCGGTATGCCTCTTTGC+CGG | - | chr1.2:86513211-86513230 | None:intergenic | 55.0% | |
| CAAAGGAAGAAGCGGAGACG+AGG | - | chr1.2:86513026-86513045 | None:intergenic | 55.0% | |
| CCTCTGCGCCGTCAATTAAG+CGG | + | chr1.2:86513499-86513518 | MS.gene74240:CDS | 55.0% | |
| CTTAATTGACGGCGCAGAGG+TGG | - | chr1.2:86513499-86513518 | None:intergenic | 55.0% | |
| GCAGTTGCACTAACTCAGGC+AGG | - | chr1.2:86514348-86514367 | None:intergenic | 55.0% | |
| !! | AGAGAAGGTGGTGATGGTGG+TGG | - | chr1.2:86513112-86513131 | None:intergenic | 55.0% |
| !! | AGAGGTGGTGCTGCTGTGAA+TGG | - | chr1.2:86513484-86513503 | None:intergenic | 55.0% |
| !! | AGGTGGTGCTGCTGTGAATG+GGG | - | chr1.2:86513482-86513501 | None:intergenic | 55.0% |
| !! | GAGGTGGTGCTGCTGTGAAT+GGG | - | chr1.2:86513483-86513502 | None:intergenic | 55.0% |
| !! | GTGATGGTGGTGGTGGTAGT+GGG | - | chr1.2:86513102-86513121 | None:intergenic | 55.0% |
| !! | TATTGTGGCGTTTGGTGCGG+CGG | - | chr1.2:86513062-86513081 | None:intergenic | 55.0% |
| !! | TGATGGTGGTGGTGGTAGTG+GGG | - | chr1.2:86513101-86513120 | None:intergenic | 55.0% |
| AGGAAGAAGCGGAGACGAGG+CGG | - | chr1.2:86513023-86513042 | None:intergenic | 60.0% | |
| CAGACCGAAGATTCCTCGGG+AGG | - | chr1.2:86515549-86515568 | None:intergenic | 60.0% | |
| CCGCTTAATTGACGGCGCAG+AGG | - | chr1.2:86513502-86513521 | None:intergenic | 60.0% | |
| CGGAGAGACAGGAGTCTTGG+TGG | + | chr1.2:86513429-86513448 | MS.gene74240:CDS | 60.0% | |
| GAGACGAGGCGGGATAAGCA+TGG | - | chr1.2:86513012-86513031 | None:intergenic | 60.0% | |
| GTGCGGAGAGACAGGAGTCT+TGG | + | chr1.2:86513426-86513445 | MS.gene74240:CDS | 60.0% | |
| !! | GAAGGTGGTGATGGTGGTGG+TGG | - | chr1.2:86513109-86513128 | None:intergenic | 60.0% |
| !! | GGTGATGGTGGTGGTGGTAG+TGG | - | chr1.2:86513103-86513122 | None:intergenic | 60.0% |
| !! | GGTGGTGCTGCTGTGAATGG+GGG | - | chr1.2:86513481-86513500 | None:intergenic | 60.0% |
| !! | GTGGTGCTGCTGTGAATGGG+GGG | - | chr1.2:86513480-86513499 | None:intergenic | 60.0% |
| GCGGCGACAGCGACGTACAA+AGG | - | chr1.2:86513043-86513062 | None:intergenic | 65.0% | |
| GGAAGAAGCGGAGACGAGGC+GGG | - | chr1.2:86513022-86513041 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 86512964 | 86516392 | 86512964 | ID=MS.gene74240 |
| chr1.2 | mRNA | 86512964 | 86516392 | 86512964 | ID=MS.gene74240.t1;Parent=MS.gene74240 |
| chr1.2 | exon | 86512964 | 86513678 | 86512964 | ID=MS.gene74240.t1.exon1;Parent=MS.gene74240.t1 |
| chr1.2 | CDS | 86512964 | 86513678 | 86512964 | ID=cds.MS.gene74240.t1;Parent=MS.gene74240.t1 |
| chr1.2 | exon | 86514108 | 86514163 | 86514108 | ID=MS.gene74240.t1.exon2;Parent=MS.gene74240.t1 |
| chr1.2 | CDS | 86514108 | 86514163 | 86514108 | ID=cds.MS.gene74240.t1;Parent=MS.gene74240.t1 |
| chr1.2 | exon | 86514633 | 86514742 | 86514633 | ID=MS.gene74240.t1.exon3;Parent=MS.gene74240.t1 |
| chr1.2 | CDS | 86514633 | 86514742 | 86514633 | ID=cds.MS.gene74240.t1;Parent=MS.gene74240.t1 |
| chr1.2 | exon | 86514850 | 86515009 | 86514850 | ID=MS.gene74240.t1.exon4;Parent=MS.gene74240.t1 |
| chr1.2 | CDS | 86514850 | 86515009 | 86514850 | ID=cds.MS.gene74240.t1;Parent=MS.gene74240.t1 |
| chr1.2 | exon | 86515471 | 86515563 | 86515471 | ID=MS.gene74240.t1.exon5;Parent=MS.gene74240.t1 |
| chr1.2 | CDS | 86515471 | 86515563 | 86515471 | ID=cds.MS.gene74240.t1;Parent=MS.gene74240.t1 |
| chr1.2 | exon | 86516246 | 86516392 | 86516246 | ID=MS.gene74240.t1.exon6;Parent=MS.gene74240.t1 |
| chr1.2 | CDS | 86516246 | 86516392 | 86516246 | ID=cds.MS.gene74240.t1;Parent=MS.gene74240.t1 |
| Gene Sequence |
| Protein sequence |
