Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99535.t1 | XP_003613903.1 | 96.2 | 78 | 1 | 1 | 27 | 104 | 137 | 212 | 2.30E-36 | 161.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99535.t1 | Q9FG89 | 72.2 | 97 | 24 | 2 | 8 | 104 | 119 | 212 | 9.1e-34 | 144.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99535.t1 | G7JWI9 | 96.2 | 78 | 1 | 1 | 27 | 104 | 137 | 212 | 1.6e-36 | 161.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene99535 | 0.853405 | 2.44E-61 | -1.69E-46 |
| MS.gene049171 | MS.gene99535 | 0.8091 | 2.24E-50 | -1.69E-46 |
| MS.gene049222 | MS.gene99535 | 0.806851 | 6.73E-50 | -1.69E-46 |
| MS.gene049427 | MS.gene99535 | 0.814892 | 1.22E-51 | -1.69E-46 |
| MS.gene049609 | MS.gene99535 | 0.880147 | 6.97E-70 | -1.69E-46 |
| MS.gene049615 | MS.gene99535 | 0.805548 | 1.27E-49 | -1.69E-46 |
| MS.gene049661 | MS.gene99535 | 0.803966 | 2.71E-49 | -1.69E-46 |
| MS.gene049794 | MS.gene99535 | 0.807357 | 5.26E-50 | -1.69E-46 |
| MS.gene049805 | MS.gene99535 | 0.8238 | 1.14E-53 | -1.69E-46 |
| MS.gene050538 | MS.gene99535 | 0.812031 | 5.20E-51 | -1.69E-46 |
| MS.gene050593 | MS.gene99535 | 0.87168 | 5.68E-67 | -1.69E-46 |
| MS.gene050670 | MS.gene99535 | 0.867811 | 1.04E-65 | -1.69E-46 |
| MS.gene050675 | MS.gene99535 | 0.80523 | 1.48E-49 | -1.69E-46 |
| MS.gene050699 | MS.gene99535 | 0.824811 | 6.59E-54 | -1.69E-46 |
| MS.gene050747 | MS.gene99535 | 0.849127 | 3.95E-60 | -1.69E-46 |
| MS.gene050772 | MS.gene99535 | 0.865322 | 6.42E-65 | -1.69E-46 |
| MS.gene050783 | MS.gene99535 | 0.803186 | 3.93E-49 | -1.69E-46 |
| MS.gene05080 | MS.gene99535 | 0.806831 | 6.80E-50 | -1.69E-46 |
| MS.gene050950 | MS.gene99535 | 0.844248 | 8.50E-59 | -1.69E-46 |
| MS.gene05105 | MS.gene99535 | 0.880044 | 7.59E-70 | -1.69E-46 |
| MS.gene051387 | MS.gene99535 | 0.840906 | 6.56E-58 | -1.69E-46 |
| MS.gene051438 | MS.gene99535 | 0.807544 | 4.80E-50 | -1.69E-46 |
| MS.gene051582 | MS.gene99535 | 0.817687 | 2.90E-52 | -1.69E-46 |
| MS.gene051666 | MS.gene99535 | 0.840643 | 7.68E-58 | -1.69E-46 |
| MS.gene051838 | MS.gene99535 | 0.825091 | 5.66E-54 | -1.69E-46 |
| MS.gene052164 | MS.gene99535 | 0.800369 | 1.49E-48 | -1.69E-46 |
| MS.gene052310 | MS.gene99535 | 0.810424 | 1.16E-50 | -1.69E-46 |
| MS.gene052322 | MS.gene99535 | 0.834814 | 2.41E-56 | -1.69E-46 |
| MS.gene052346 | MS.gene99535 | 0.806622 | 7.52E-50 | -1.69E-46 |
| MS.gene05240 | MS.gene99535 | -0.802423 | 5.65E-49 | -1.69E-46 |
| MS.gene052414 | MS.gene99535 | 0.821965 | 3.05E-53 | -1.69E-46 |
| MS.gene052421 | MS.gene99535 | 0.832476 | 9.25E-56 | -1.69E-46 |
| MS.gene052481 | MS.gene99535 | 0.826052 | 3.35E-54 | -1.69E-46 |
| MS.gene052501 | MS.gene99535 | 0.835943 | 1.25E-56 | -1.69E-46 |
| MS.gene052503 | MS.gene99535 | 0.805894 | 1.07E-49 | -1.69E-46 |
| MS.gene052505 | MS.gene99535 | 0.840264 | 9.66E-58 | -1.69E-46 |
| MS.gene052615 | MS.gene99535 | 0.829949 | 3.86E-55 | -1.69E-46 |
| MS.gene052982 | MS.gene99535 | 0.858086 | 1.05E-62 | -1.69E-46 |
| MS.gene053009 | MS.gene99535 | 0.818934 | 1.51E-52 | -1.69E-46 |
| MS.gene053203 | MS.gene99535 | 0.831787 | 1.37E-55 | -1.69E-46 |
| MS.gene053207 | MS.gene99535 | 0.87002 | 2.00E-66 | -1.69E-46 |
| MS.gene053209 | MS.gene99535 | 0.813772 | 2.16E-51 | -1.69E-46 |
| MS.gene053213 | MS.gene99535 | 0.839647 | 1.40E-57 | -1.69E-46 |
| MS.gene053286 | MS.gene99535 | 0.827302 | 1.69E-54 | -1.69E-46 |
| MS.gene053436 | MS.gene99535 | 0.839088 | 1.95E-57 | -1.69E-46 |
| MS.gene053574 | MS.gene99535 | 0.859579 | 3.75E-63 | -1.69E-46 |
| MS.gene053632 | MS.gene99535 | 0.823314 | 1.48E-53 | -1.69E-46 |
| MS.gene054600 | MS.gene99535 | 0.817449 | 3.28E-52 | -1.69E-46 |
| MS.gene054642 | MS.gene99535 | 0.809687 | 1.67E-50 | -1.69E-46 |
| MS.gene054917 | MS.gene99535 | 0.813336 | 2.69E-51 | -1.69E-46 |
| MS.gene054927 | MS.gene99535 | 0.873242 | 1.71E-67 | -1.69E-46 |
| MS.gene05505 | MS.gene99535 | 0.817999 | 2.46E-52 | -1.69E-46 |
| MS.gene055116 | MS.gene99535 | 0.869327 | 3.36E-66 | -1.69E-46 |
| MS.gene055289 | MS.gene99535 | 0.819229 | 1.30E-52 | -1.69E-46 |
| MS.gene055362 | MS.gene99535 | 0.804101 | 2.54E-49 | -1.69E-46 |
| MS.gene055369 | MS.gene99535 | 0.815374 | 9.55E-52 | -1.69E-46 |
| MS.gene055564 | MS.gene99535 | 0.838373 | 2.99E-57 | -1.69E-46 |
| MS.gene055577 | MS.gene99535 | 0.81329 | 2.76E-51 | -1.69E-46 |
| MS.gene055722 | MS.gene99535 | 0.833319 | 5.71E-56 | -1.69E-46 |
| MS.gene05592 | MS.gene99535 | 0.805592 | 1.24E-49 | -1.69E-46 |
| MS.gene05594 | MS.gene99535 | 0.817757 | 2.79E-52 | -1.69E-46 |
| MS.gene05602 | MS.gene99535 | 0.825089 | 5.67E-54 | -1.69E-46 |
| MS.gene056040 | MS.gene99535 | 0.810758 | 9.83E-51 | -1.69E-46 |
| MS.gene056083 | MS.gene99535 | 0.826575 | 2.52E-54 | -1.69E-46 |
| MS.gene056337 | MS.gene99535 | 0.805499 | 1.30E-49 | -1.69E-46 |
| MS.gene056407 | MS.gene99535 | 0.82784 | 1.25E-54 | -1.69E-46 |
| MS.gene056497 | MS.gene99535 | 0.803667 | 3.12E-49 | -1.69E-46 |
| MS.gene056511 | MS.gene99535 | 0.836143 | 1.11E-56 | -1.69E-46 |
| MS.gene05664 | MS.gene99535 | 0.848938 | 4.45E-60 | -1.69E-46 |
| MS.gene05666 | MS.gene99535 | 0.842468 | 2.54E-58 | -1.69E-46 |
| MS.gene056877 | MS.gene99535 | 0.813526 | 2.45E-51 | -1.69E-46 |
| MS.gene05702 | MS.gene99535 | 0.802772 | 4.79E-49 | -1.69E-46 |
| MS.gene057048 | MS.gene99535 | 0.800883 | 1.17E-48 | -1.69E-46 |
| MS.gene057076 | MS.gene99535 | 0.820546 | 6.48E-53 | -1.69E-46 |
| MS.gene057124 | MS.gene99535 | 0.86796 | 9.31E-66 | -1.69E-46 |
| MS.gene057129 | MS.gene99535 | 0.806181 | 9.32E-50 | -1.69E-46 |
| MS.gene057196 | MS.gene99535 | 0.81387 | 2.06E-51 | -1.69E-46 |
| MS.gene057331 | MS.gene99535 | 0.863516 | 2.35E-64 | -1.69E-46 |
| MS.gene057416 | MS.gene99535 | 0.86635 | 3.04E-65 | -1.69E-46 |
| MS.gene057658 | MS.gene99535 | 0.812462 | 4.19E-51 | -1.69E-46 |
| MS.gene057734 | MS.gene99535 | 0.828258 | 9.94E-55 | -1.69E-46 |
| MS.gene057749 | MS.gene99535 | 0.81607 | 6.68E-52 | -1.69E-46 |
| MS.gene057823 | MS.gene99535 | 0.804449 | 2.15E-49 | -1.69E-46 |
| MS.gene057825 | MS.gene99535 | 0.805025 | 1.63E-49 | -1.69E-46 |
| MS.gene058019 | MS.gene99535 | 0.841899 | 3.59E-58 | -1.69E-46 |
| MS.gene058130 | MS.gene99535 | 0.811357 | 7.29E-51 | -1.69E-46 |
| MS.gene058419 | MS.gene99535 | 0.812858 | 3.43E-51 | -1.69E-46 |
| MS.gene058544 | MS.gene99535 | 0.832609 | 8.57E-56 | -1.69E-46 |
| MS.gene058660 | MS.gene99535 | 0.805505 | 1.29E-49 | -1.69E-46 |
| MS.gene058700 | MS.gene99535 | 0.820922 | 5.31E-53 | -1.69E-46 |
| MS.gene058723 | MS.gene99535 | 0.836647 | 8.28E-57 | -1.69E-46 |
| MS.gene058838 | MS.gene99535 | 0.829187 | 5.92E-55 | -1.69E-46 |
| MS.gene05883 | MS.gene99535 | 0.842194 | 3.00E-58 | -1.69E-46 |
| MS.gene05886 | MS.gene99535 | 0.824312 | 8.64E-54 | -1.69E-46 |
| MS.gene058948 | MS.gene99535 | 0.807911 | 4.01E-50 | -1.69E-46 |
| MS.gene059023 | MS.gene99535 | 0.82049 | 6.67E-53 | -1.69E-46 |
| MS.gene059688 | MS.gene99535 | 0.834566 | 2.78E-56 | -1.69E-46 |
| MS.gene059692 | MS.gene99535 | 0.815934 | 7.17E-52 | -1.69E-46 |
| MS.gene059695 | MS.gene99535 | 0.820253 | 7.56E-53 | -1.69E-46 |
| MS.gene059718 | MS.gene99535 | 0.84421 | 8.70E-59 | -1.69E-46 |
| MS.gene059902 | MS.gene99535 | 0.801385 | 9.23E-49 | -1.69E-46 |
| MS.gene060403 | MS.gene99535 | 0.86065 | 1.78E-63 | -1.69E-46 |
| MS.gene060804 | MS.gene99535 | 0.817144 | 3.84E-52 | -1.69E-46 |
| MS.gene060835 | MS.gene99535 | 0.854008 | 1.64E-61 | -1.69E-46 |
| MS.gene060837 | MS.gene99535 | 0.816449 | 5.50E-52 | -1.69E-46 |
| MS.gene06092 | MS.gene99535 | 0.850627 | 1.50E-60 | -1.69E-46 |
| MS.gene061150 | MS.gene99535 | 0.811508 | 6.76E-51 | -1.69E-46 |
| MS.gene061154 | MS.gene99535 | 0.835421 | 1.69E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99535.t1 | MTR_5g042420 | 94.937 | 79 | 2 | 1 | 26 | 104 | 136 | 212 | 1.01e-50 | 159 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99535.t1 | AT5G43750 | 72.165 | 97 | 24 | 2 | 8 | 104 | 119 | 212 | 8.42e-46 | 147 |
Find 18 sgRNAs with CRISPR-Local
Find 87 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGGATTTCAATGACAAATA+TGG | 0.271183 | 1.3:-23483583 | MS.gene99535:CDS |
| CTTTCCATGTTGTATATTTG+AGG | 0.297169 | 1.3:+23483652 | None:intergenic |
| ACTATAATTCCATGAGCATA+TGG | 0.355011 | 1.3:-23483603 | MS.gene99535:CDS |
| TTTGAGTATGGAATATTTGA+TGG | 0.360719 | 1.3:-23484766 | MS.gene99535:CDS |
| TTATAGGAAGAATTTGAGTA+TGG | 0.374124 | 1.3:-23484778 | MS.gene99535:intron |
| ATGACAAATATGGAGACCTT+TGG | 0.379641 | 1.3:-23483573 | MS.gene99535:CDS |
| TCAAAGTGATGAGGTTGATC+AGG | 0.402133 | 1.3:+23483676 | None:intergenic |
| TGACAAATATGGAGACCTTT+GGG | 0.407790 | 1.3:-23483572 | MS.gene99535:CDS |
| GAGTATTTGTTCATTGGAGC+AGG | 0.434030 | 1.3:-23483739 | MS.gene99535:CDS |
| GGTCATCATACTTTCAATGA+AGG | 0.504834 | 1.3:-23484745 | MS.gene99535:CDS |
| CAAATATACAACATGGAAAG+AGG | 0.518390 | 1.3:-23483649 | MS.gene99535:CDS |
| CTATAATTCCATGAGCATAT+GGG | 0.524970 | 1.3:-23483602 | MS.gene99535:CDS |
| ATTGAAATCCCATATGCTCA+TGG | 0.535585 | 1.3:+23483594 | None:intergenic |
| AATGAAGGTGAAGAAAAGAA+AGG | 0.563141 | 1.3:-23484730 | MS.gene99535:intron |
| ATTTGAGGTTCAAAGTGATG+AGG | 0.590006 | 1.3:+23483667 | None:intergenic |
| AGTATTTGTTCATTGGAGCA+GGG | 0.597436 | 1.3:-23483738 | MS.gene99535:CDS |
| TCTTGATAGTAAAATCCCAA+AGG | 0.630483 | 1.3:+23483557 | None:intergenic |
| TGAACCTCAAATATACAACA+TGG | 0.679208 | 1.3:-23483656 | MS.gene99535:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAATTAGAGAATA+AGG | - | chr1.3:23483824-23483843 | MS.gene99535:intron | 10.0% |
| !!! | TTTTTTTTTTTATAGTACTA+TGG | - | chr1.3:23483564-23483583 | MS.gene99535:CDS | 10.0% |
| !! | GTATATATATGAAAAAATAC+AGG | + | chr1.3:23483542-23483561 | None:intergenic | 15.0% |
| !! | TATATATGAAAAAATACAGG+TGG | + | chr1.3:23483539-23483558 | None:intergenic | 20.0% |
| !!! | CAATCACTTTTGTTTTTTAA+TGG | - | chr1.3:23483751-23483770 | MS.gene99535:intron | 20.0% |
| !!! | CAATTAACATTTAGAATTAC+CGG | + | chr1.3:23484552-23484571 | None:intergenic | 20.0% |
| !!! | TTTTACTATCAAGAAGAATA+AGG | - | chr1.3:23484857-23484876 | MS.gene99535:intron | 20.0% |
| ! | AACGATTATAGTCAAAATTG+TGG | + | chr1.3:23484442-23484461 | None:intergenic | 25.0% |
| ! | ACTAATGAATAAATAAGTCG+TGG | - | chr1.3:23484232-23484251 | MS.gene99535:intron | 25.0% |
| ! | AGAAATCAATTGATACATTG+AGG | - | chr1.3:23484597-23484616 | MS.gene99535:intron | 25.0% |
| ! | TAAGTACAATGTATGTTTCA+GGG | - | chr1.3:23484642-23484661 | MS.gene99535:intron | 25.0% |
| ! | TTATAGGAAGAATTTGAGTA+TGG | - | chr1.3:23483627-23483646 | MS.gene99535:CDS | 25.0% |
| ! | TTGTAATACACGTTAGAAAA+TGG | + | chr1.3:23484128-23484147 | None:intergenic | 25.0% |
| ! | TTTGAGTATGGAATATTTGA+TGG | - | chr1.3:23483639-23483658 | MS.gene99535:CDS | 25.0% |
| !! | ATCAATTTCAGGAACATTTT+GGG | - | chr1.3:23484035-23484054 | MS.gene99535:intron | 25.0% |
| !! | TGTATTTTGCATTATTGAGA+TGG | - | chr1.3:23484701-23484720 | MS.gene99535:intron | 25.0% |
| !!! | AATGTTGATTTTATTGTCGA+AGG | - | chr1.3:23483874-23483893 | MS.gene99535:intron | 25.0% |
| !!! | CTAATTTTGATTCTAATGCA+GGG | - | chr1.3:23484472-23484491 | MS.gene99535:intron | 25.0% |
| !!! | TCTAATTTTGATTCTAATGC+AGG | - | chr1.3:23484471-23484490 | MS.gene99535:intron | 25.0% |
| !!! | TTGTTTTGTGTGGATTTTAT+AGG | - | chr1.3:23483611-23483630 | MS.gene99535:CDS | 25.0% |
| AAGTACAATGTATGTTTCAG+GGG | - | chr1.3:23484643-23484662 | MS.gene99535:intron | 30.0% | |
| AATGAAGGTGAAGAAAAGAA+AGG | - | chr1.3:23483675-23483694 | MS.gene99535:CDS | 30.0% | |
| ACTATAATTCCATGAGCATA+TGG | - | chr1.3:23484802-23484821 | MS.gene99535:intron | 30.0% | |
| ATAGTCAAAATTGTGGTCAA+GGG | + | chr1.3:23484435-23484454 | None:intergenic | 30.0% | |
| CAAAGTTCATGATCAATTTC+AGG | - | chr1.3:23484024-23484043 | MS.gene99535:intron | 30.0% | |
| CAAATATACAACATGGAAAG+AGG | - | chr1.3:23484756-23484775 | MS.gene99535:CDS | 30.0% | |
| CTAAGTACAATGTATGTTTC+AGG | - | chr1.3:23484641-23484660 | MS.gene99535:intron | 30.0% | |
| CTATAATTCCATGAGCATAT+GGG | - | chr1.3:23484803-23484822 | MS.gene99535:intron | 30.0% | |
| CTGAAACATACATTGTACTT+AGG | + | chr1.3:23484643-23484662 | None:intergenic | 30.0% | |
| CTTTCCATGTTGTATATTTG+AGG | + | chr1.3:23484756-23484775 | None:intergenic | 30.0% | |
| TAGAAAAACATATACACGCT+TGG | + | chr1.3:23484003-23484022 | None:intergenic | 30.0% | |
| TATAGTCAAAATTGTGGTCA+AGG | + | chr1.3:23484436-23484455 | None:intergenic | 30.0% | |
| TGAACCTCAAATATACAACA+TGG | - | chr1.3:23484749-23484768 | MS.gene99535:CDS | 30.0% | |
| TGGGATTTCAATGACAAATA+TGG | - | chr1.3:23484822-23484841 | MS.gene99535:intron | 30.0% | |
| TTAATGGAAATTGAAGCATG+TGG | - | chr1.3:23483767-23483786 | MS.gene99535:intron | 30.0% | |
| ! | GATCAATTTCAGGAACATTT+TGG | - | chr1.3:23484034-23484053 | MS.gene99535:intron | 30.0% |
| ! | TCAATTTCAGGAACATTTTG+GGG | - | chr1.3:23484036-23484055 | MS.gene99535:intron | 30.0% |
| ! | TCTTGATAGTAAAATCCCAA+AGG | + | chr1.3:23484851-23484870 | None:intergenic | 30.0% |
| !!! | TGAGATTTGTTTGTTTTGTG+TGG | - | chr1.3:23483601-23483620 | MS.gene99535:CDS | 30.0% |
| AAACATACCTTGAAATCCAG+TGG | + | chr1.3:23484097-23484116 | None:intergenic | 35.0% | |
| AACATACCTTGAAATCCAGT+GGG | + | chr1.3:23484096-23484115 | None:intergenic | 35.0% | |
| AAGGATGACATAATAGCAGT+AGG | - | chr1.3:23484066-23484085 | MS.gene99535:intron | 35.0% | |
| ACACGTTAGAAAATGGTACA+AGG | + | chr1.3:23484121-23484140 | None:intergenic | 35.0% | |
| AGTACAATGTATGTTTCAGG+GGG | - | chr1.3:23484644-23484663 | MS.gene99535:intron | 35.0% | |
| AGTATTTGTTCATTGGAGCA+GGG | - | chr1.3:23484667-23484686 | MS.gene99535:intron | 35.0% | |
| ATGACAAATATGGAGACCTT+TGG | - | chr1.3:23484832-23484851 | MS.gene99535:intron | 35.0% | |
| ATTGAAATCCCATATGCTCA+TGG | + | chr1.3:23484814-23484833 | None:intergenic | 35.0% | |
| CCAATGGTAAGAGTTTGATA+TGG | + | chr1.3:23483924-23483943 | None:intergenic | 35.0% | |
| CCATATCAAACTCTTACCAT+TGG | - | chr1.3:23483921-23483940 | MS.gene99535:intron | 35.0% | |
| CTAATTGAACCACAATTTGG+AGG | + | chr1.3:23484191-23484210 | None:intergenic | 35.0% | |
| GAGCTAATTGAACCACAATT+TGG | + | chr1.3:23484194-23484213 | None:intergenic | 35.0% | |
| GGTCATCATACTTTCAATGA+AGG | - | chr1.3:23483660-23483679 | MS.gene99535:CDS | 35.0% | |
| TAGTCAAAATTGTGGTCAAG+GGG | + | chr1.3:23484434-23484453 | None:intergenic | 35.0% | |
| TGACAAATATGGAGACCTTT+GGG | - | chr1.3:23484833-23484852 | MS.gene99535:intron | 35.0% | |
| ! | ACCACAATTTGGAGGTTTTA+CGG | + | chr1.3:23484183-23484202 | None:intergenic | 35.0% |
| ! | ATTTGAGGTTCAAAGTGATG+AGG | + | chr1.3:23484741-23484760 | None:intergenic | 35.0% |
| !!! | AACATTTTGGGGTGCAATTA+AGG | - | chr1.3:23484047-23484066 | MS.gene99535:intron | 35.0% |
| ACATACCTTGAAATCCAGTG+GGG | + | chr1.3:23484095-23484114 | None:intergenic | 40.0% | |
| ATTGAAGCATGTGGTACTCA+TGG | - | chr1.3:23483776-23483795 | MS.gene99535:intron | 40.0% | |
| CTAATGCAGGGCTTATTTCA+TGG | - | chr1.3:23484484-23484503 | MS.gene99535:intron | 40.0% | |
| GAGTATTTGTTCATTGGAGC+AGG | - | chr1.3:23484666-23484685 | MS.gene99535:intron | 40.0% | |
| TCACAGCTCATTAGCTATTG+TGG | - | chr1.3:23483946-23483965 | MS.gene99535:intron | 40.0% | |
| TTTGATACTGCAGAGGTTTG+TGG | + | chr1.3:23484393-23484412 | None:intergenic | 40.0% | |
| ! | CCACAATTTGGAGGTTTTAC+GGG | + | chr1.3:23484182-23484201 | None:intergenic | 40.0% |
| ! | TCAAAGTGATGAGGTTGATC+AGG | + | chr1.3:23484732-23484751 | None:intergenic | 40.0% |
| ATACCTTGAAATCCAGTGGG+GGG | + | chr1.3:23484093-23484112 | None:intergenic | 45.0% | |
| CAGCTCATTAGCTATTGTGG+AGG | - | chr1.3:23483949-23483968 | MS.gene99535:intron | 45.0% | |
| CATACCTTGAAATCCAGTGG+GGG | + | chr1.3:23484094-23484113 | None:intergenic | 45.0% | |
| CCCGTAAAACCTCCAAATTG+TGG | - | chr1.3:23484179-23484198 | MS.gene99535:intron | 45.0% | |
| CTAATGAGCTGTGACACCAA+TGG | + | chr1.3:23483940-23483959 | None:intergenic | 45.0% | |
| ! | AGTCGATTCTGCCTCAATTG+CGG | + | chr1.3:23484362-23484381 | None:intergenic | 45.0% |
| ! | GCAAGCTTTTGATACTGCAG+AGG | + | chr1.3:23484400-23484419 | None:intergenic | 45.0% |
| ! | TGGGGTATTCTTCGATGTTC+CGG | - | chr1.3:23484530-23484549 | MS.gene99535:intron | 45.0% |
| !! | CAGGGGGAGTATTTGTTCAT+TGG | - | chr1.3:23484660-23484679 | MS.gene99535:intron | 45.0% |
| GAAGAATACCCCAGCAGCAA+TGG | + | chr1.3:23484523-23484542 | None:intergenic | 50.0% | |
| TCGTGGTTGTGTTGCAACTG+AGG | - | chr1.3:23484249-23484268 | MS.gene99535:intron | 50.0% | |
| AATACCCCAGCAGCAATGGC+TGG | + | chr1.3:23484519-23484538 | None:intergenic | 55.0% | |
| ATAGCAGTAGGACCCCCCAC+TGG | - | chr1.3:23484078-23484097 | MS.gene99535:intron | 60.0% | |
| CTGCACTGCAGCCGCAATTG+AGG | - | chr1.3:23484348-23484367 | MS.gene99535:intron | 60.0% | |
| GCTGCAGTGCAGTGCAGTTG+TGG | + | chr1.3:23484340-23484359 | None:intergenic | 60.0% | |
| GGACCCCCCACTGGATTTCA+AGG | - | chr1.3:23484087-23484106 | MS.gene99535:intron | 60.0% | |
| TCCCACCAGCCATTGCTGCT+GGG | - | chr1.3:23484511-23484530 | MS.gene99535:intron | 60.0% | |
| TGGTCAAGGGGCAGCTCAAG+TGG | + | chr1.3:23484422-23484441 | None:intergenic | 60.0% | |
| TTCCCACCAGCCATTGCTGC+TGG | - | chr1.3:23484510-23484529 | MS.gene99535:intron | 60.0% | |
| ACCCCAGCAGCAATGGCTGG+TGG | + | chr1.3:23484516-23484535 | None:intergenic | 65.0% | |
| CCCACCAGCCATTGCTGCTG+GGG | - | chr1.3:23484512-23484531 | MS.gene99535:intron | 65.0% | |
| CCCCAGCAGCAATGGCTGGT+GGG | + | chr1.3:23484515-23484534 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 23483528 | 23484899 | 23483528 | ID=MS.gene99535 |
| chr1.3 | mRNA | 23483528 | 23484899 | 23483528 | ID=MS.gene99535.t1;Parent=MS.gene99535 |
| chr1.3 | exon | 23484886 | 23484899 | 23484886 | ID=MS.gene99535.t1.exon1;Parent=MS.gene99535.t1 |
| chr1.3 | CDS | 23484886 | 23484899 | 23484886 | ID=cds.MS.gene99535.t1;Parent=MS.gene99535.t1 |
| chr1.3 | exon | 23484731 | 23484794 | 23484731 | ID=MS.gene99535.t1.exon2;Parent=MS.gene99535.t1 |
| chr1.3 | CDS | 23484731 | 23484794 | 23484731 | ID=cds.MS.gene99535.t1;Parent=MS.gene99535.t1 |
| chr1.3 | exon | 23483528 | 23483764 | 23483528 | ID=MS.gene99535.t1.exon3;Parent=MS.gene99535.t1 |
| chr1.3 | CDS | 23483528 | 23483764 | 23483528 | ID=cds.MS.gene99535.t1;Parent=MS.gene99535.t1 |
| Gene Sequence |
| Protein sequence |
