AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580028346.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580028346.01.T01 MTR_5g067670 93.530 541 28 2 1 534 1 541 0.0 1009
MsG0580028346.01.T01 MTR_8g005790 61.133 512 162 10 37 534 26 514 0.0 576
MsG0580028346.01.T01 MTR_8g021310 47.628 506 235 8 39 534 20 505 8.62e-159 462
MsG0580028346.01.T01 MTR_2g007740 49.482 483 228 5 39 512 23 498 5.87e-157 457
MsG0580028346.01.T01 MTR_8g005485 55.134 448 141 8 37 472 26 425 9.34e-156 451
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580028346.01.T01 AT1G61670 61.047 516 176 4 28 534 14 513 0.0 619
MsG0580028346.01.T01 AT1G61670 61.047 516 176 4 28 534 14 513 0.0 619
MsG0580028346.01.T01 AT1G72480 46.498 514 238 8 37 534 17 509 2.35e-160 466
MsG0580028346.01.T01 AT2G01070 45.957 507 232 7 36 534 24 496 7.92e-152 444
MsG0580028346.01.T01 AT2G01070 48.098 447 205 4 36 474 24 451 5.67e-143 420
MsG0580028346.01.T01 AT1G10980 45.591 465 230 9 25 473 8 465 1.11e-134 401

Find 151 sgRNAs with CRISPR-Local

Find 325 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTCTGGTTTGTAAAATAT+TGG 0.173630 5:-78761559 MsG0580028346.01.T01:CDS
CATGGGCCATCCCAGCTTTC+TGG 0.177151 5:-78760036 MsG0580028346.01.T01:CDS
TACCACATTACTGCTGTTAT+TGG 0.195867 5:-78761515 MsG0580028346.01.T01:CDS
CTGAAGGACACGGTGATTTC+TGG 0.200991 5:-78761692 MsG0580028346.01.T01:CDS
GCTACAGATCATCATGTATT+TGG 0.203519 5:-78759019 MsG0580028346.01.T01:CDS
TGGATGCTTGCTTTATTCTT+TGG 0.221752 5:-78761172 MsG0580028346.01.T01:CDS
ACTCCATGTTGACATCATTT+AGG 0.248269 5:+78758911 None:intergenic
TCAATGCATCAGACCCTTTA+GGG 0.251565 5:-78760075 MsG0580028346.01.T01:CDS
ACCTCAAAAGTCCTTCTTCT+TGG 0.273539 5:-78761305 MsG0580028346.01.T01:CDS
GGTTGAAGCTATAATAATTA+AGG 0.303463 5:-78761969 MsG0580028346.01.T01:CDS
AAAGAAGGTTCTTGTAAGTT+AGG 0.306234 5:-78761875 MsG0580028346.01.T01:CDS
TGATAGTGATCTGCATTCTC+TGG 0.310427 5:-78759991 MsG0580028346.01.T01:CDS
AGTGTCACGGCTTCTTCTTT+TGG 0.318968 5:-78761375 MsG0580028346.01.T01:CDS
ACCATACAAGACCAAGAAAA+AGG 0.324069 5:+78761582 None:intergenic
TTCAATGCATCAGACCCTTT+AGG 0.333666 5:-78760076 MsG0580028346.01.T01:CDS
TTGGTCTTGTATGGTTTCTC+TGG 0.344106 5:-78761574 MsG0580028346.01.T01:CDS
GGCCAATGGTAATTACAGTA+TGG 0.360279 5:-78761427 MsG0580028346.01.T01:CDS
TATTGAGTTTAACCATTCTC+TGG 0.361711 5:-78763100 MsG0580028346.01.T01:CDS
TTCGGCCCGTTCGGTTCATC+CGG 0.361760 5:+78761830 None:intergenic
ACCTGGTTGGATTTCGAGAT+GGG 0.379982 5:+78759966 None:intergenic
GGTTTGAGTCTATCAACTTC+CGG 0.380348 5:-78762045 MsG0580028346.01.T01:CDS
GAAGACAAGAGGGAGTGATT+TGG 0.380730 5:-78758977 MsG0580028346.01.T01:exon
AGTTCGATGCAACAGAAAAC+AGG 0.388815 5:-78761995 MsG0580028346.01.T01:CDS
AGAGAATGGTTAAACTCAAT+AGG 0.390232 5:+78763102 None:intergenic
GGTGCTGCCTGTGGCTCTGT+TGG 0.391425 5:-78761192 MsG0580028346.01.T01:CDS
TAAAACCCTTGAGAAGCTTC+AGG 0.396513 5:-78761132 MsG0580028346.01.T01:CDS
ACTGTTGATATTAATAGTAC+TGG 0.400431 5:-78761752 MsG0580028346.01.T01:CDS
TCACTGTCTCTTTGTTCACT+TGG 0.401368 5:-78758939 MsG0580028346.01.T01:three_prime_UTR
TTCTTTCATGGTGGTAGTGA+AGG 0.418942 5:-78763141 MsG0580028346.01.T01:CDS
CACTGTCTCTTTGTTCACTT+GGG 0.420754 5:-78758938 MsG0580028346.01.T01:three_prime_UTR
CTAATAACTACAAGTGTCTC+AGG 0.421780 5:-78760127 MsG0580028346.01.T01:CDS
AGACAGTGATTAAAGAAGTT+AGG 0.424341 5:+78758953 None:intergenic
CAAGCATCCAACAGAGCCAC+AGG 0.424636 5:+78761185 None:intergenic
AGATTGAAGAGGGGTGGTTC+CGG 0.426169 5:+78763268 None:intergenic
GGTAATATTAATGACTTCTC+TGG 0.426380 5:-78761233 MsG0580028346.01.T01:CDS
TGCAAGCGTTTCGGCCCGTT+CGG 0.428313 5:+78761821 None:intergenic
TTGGTGGTTTCTATGGGCTA+TGG 0.429923 5:-78761356 MsG0580028346.01.T01:CDS
GACAAAAGAGTCTGCTCAAA+AGG 0.430473 5:-78762020 MsG0580028346.01.T01:CDS
AGAGAATGCAGATCACTATC+AGG 0.431075 5:+78759993 None:intergenic
ATCACCGTGTCCTTCAGTTC+AGG 0.431143 5:+78761698 None:intergenic
TGAGAGATAGGAATAACATT+GGG 0.434814 5:-78761946 MsG0580028346.01.T01:CDS
ATTACTGCTGTTATTGGCCT+AGG 0.448078 5:-78761509 MsG0580028346.01.T01:CDS
GACGGATGAACGTTTCGTTT+TGG 0.449993 5:+78763178 None:intergenic
TAATAATTAAGGTGAGAGAT+AGG 0.455034 5:-78761958 MsG0580028346.01.T01:CDS
GAGGAAGCTGTCGCAGTTGT+TGG 0.456260 5:-78759118 MsG0580028346.01.T01:CDS
GTCTACCATGCTAGAAAGAA+AGG 0.461091 5:-78759068 MsG0580028346.01.T01:CDS
GCAAGCAAAGTCCAGAAAGC+TGG 0.461992 5:+78760025 None:intergenic
TATGCAAATTTCAATTCGAC+AGG 0.463240 5:-78761455 MsG0580028346.01.T01:CDS
ACGGCGATCGCCGCCGTGAT+CGG 0.464824 5:+78763299 None:intergenic
CCACTGGTAAATCCTTCATC+AGG 0.467526 5:-78763068 MsG0580028346.01.T01:intron
GAACCTTCTTTAGCAAGCTC+TGG 0.476728 5:+78761887 None:intergenic
CTTCGCCACAGTTCCCCTAA+AGG 0.480015 5:+78760061 None:intergenic
ACAGAGCCACAGGCAGCACC+AGG 0.482328 5:+78761195 None:intergenic
GAAGCATTATTACCTGATGA+AGG 0.482435 5:+78763056 None:intergenic
TTCGCCACAGTTCCCCTAAA+GGG 0.485271 5:+78760062 None:intergenic
GTGAGAGATAGGAATAACAT+TGG 0.487734 5:-78761947 MsG0580028346.01.T01:CDS
TCTATCCTTTCTTTCTAGCA+TGG 0.494278 5:+78759063 None:intergenic
TGTCTCTTTGTTCACTTGGG+AGG 0.497256 5:-78758935 MsG0580028346.01.T01:three_prime_UTR
GATAGTGATCTGCATTCTCT+GGG 0.497470 5:-78759990 MsG0580028346.01.T01:CDS
CGACGAGGGTGATGATTGAA+TGG 0.498349 5:+78763220 None:intergenic
AGCAACAAGGGAGGAGAAAG+AGG 0.499385 5:-78758888 MsG0580028346.01.T01:three_prime_UTR
GGAAGTGGAGTTAAGATGTC+TGG 0.500442 5:-78759097 MsG0580028346.01.T01:CDS
GCTGTCGCAGTTGTTGGAAG+TGG 0.500683 5:-78759112 MsG0580028346.01.T01:CDS
ATTTCAATTCGACAGGAAGC+AGG 0.503260 5:-78761448 MsG0580028346.01.T01:CDS
TTGAATGGAAAGTGAGGTAG+AGG 0.511596 5:+78763235 None:intergenic
GCTAGAAAGAAAGGATAGAA+AGG 0.511597 5:-78759059 MsG0580028346.01.T01:CDS
GGTGGTTCCGGTGACGGTGA+CGG 0.512735 5:+78763280 None:intergenic
CCCCATCTCGAAATCCAACC+AGG 0.512950 5:-78759967 MsG0580028346.01.T01:intron
TCGGTTCATCCGGGTTCTCA+CGG 0.513079 5:+78761840 None:intergenic
TGGCCTAGGCATGTGTGAAA+TGG 0.515894 5:-78761495 MsG0580028346.01.T01:CDS
CACCAGCTCAAGTGCTTCTG+AGG 0.518569 5:+78761265 None:intergenic
TCGGCCCGTTCGGTTCATCC+GGG 0.519342 5:+78761831 None:intergenic
GCGATCGCCGTCACCGTCAC+CGG 0.520776 5:-78763287 MsG0580028346.01.T01:CDS
AAGAACTGTGTGGAGAAATC+CGG 0.522773 5:-78761669 MsG0580028346.01.T01:CDS
TATTCGTACTCGGAAGAGAC+GGG 0.523108 5:-78759154 MsG0580028346.01.T01:CDS
GGAACTGTGGCGAAGAGCAT+GGG 0.523153 5:-78760053 MsG0580028346.01.T01:CDS
GTATTCGTACTCGGAAGAGA+CGG 0.524880 5:-78759155 MsG0580028346.01.T01:CDS
AAAAGTCCTTCTTCTTGGTG+TGG 0.525085 5:-78761300 MsG0580028346.01.T01:CDS
AAGAGGGGTGGTTCCGGTGA+CGG 0.529790 5:+78763274 None:intergenic
GAAAGAGGATCAATATTCAA+TGG 0.533669 5:-78758873 MsG0580028346.01.T01:three_prime_UTR
TACCTGGTTGGATTTCGAGA+TGG 0.533963 5:+78759965 None:intergenic
AGAACCCGGATGAACCGAAC+GGG 0.538174 5:-78761835 MsG0580028346.01.T01:CDS
GGGAACTGTGGCGAAGAGCA+TGG 0.540024 5:-78760054 MsG0580028346.01.T01:CDS
AATACACCACACCAAGAAGA+AGG 0.543762 5:+78761294 None:intergenic
GGCCTCAGAAGCACTTGAGC+TGG 0.548090 5:-78761267 MsG0580028346.01.T01:CDS
CTGTTGATATTAATAGTACT+GGG 0.548195 5:-78761751 MsG0580028346.01.T01:CDS
GGAGTTGTCCGTCCAACACT+TGG 0.550192 5:-78761335 MsG0580028346.01.T01:CDS
GCCCATACTGTAATTACCAT+TGG 0.550436 5:+78761425 None:intergenic
AGGTTCTTGTAAGTTAGGAG+AGG 0.550669 5:-78761870 MsG0580028346.01.T01:CDS
TGGAGTTATTGAAGATCTAG+AGG 0.550890 5:-78758999 MsG0580028346.01.T01:CDS
CAAGCAAAGTCCAGAAAGCT+GGG 0.551328 5:+78760026 None:intergenic
AAATCCGGATGGTTATCTAC+CGG 0.552193 5:-78761654 MsG0580028346.01.T01:CDS
GCCAATGGTAATTACAGTAT+GGG 0.552364 5:-78761426 MsG0580028346.01.T01:CDS
TGGGAAAGTTATCCAGAGAA+TGG 0.553739 5:+78763088 None:intergenic
AGGTTACCTGAAGCTTCTCA+AGG 0.556720 5:+78761126 None:intergenic
ACACCAGAGCTTGCTAAAGA+AGG 0.560824 5:-78761890 MsG0580028346.01.T01:CDS
GGTTATCATCCGTGAGAACC+CGG 0.561083 5:-78761849 MsG0580028346.01.T01:CDS
ATCAATGGCATCATCTTCCC+CGG 0.566051 5:+78761635 None:intergenic
AATCCGGATGGTTATCTACC+GGG 0.567234 5:-78761653 MsG0580028346.01.T01:CDS
CTCAGAAGCACTTGAGCTGG+TGG 0.568044 5:-78761264 MsG0580028346.01.T01:CDS
CAAAGTCCAGAAAGCTGGGA+TGG 0.571674 5:+78760030 None:intergenic
CTTGAGCTGGTGGAACATCT+CGG 0.573132 5:-78761254 MsG0580028346.01.T01:CDS
TTCCCCGGTAGATAACCATC+CGG 0.578080 5:+78761650 None:intergenic
AACACGGCGGAGATTGAAGA+GGG 0.582857 5:+78763258 None:intergenic
AGATCTAGAGGAAGACAAGA+GGG 0.585180 5:-78758987 MsG0580028346.01.T01:CDS
CTGATGAAGGATTTACCAGT+GGG 0.588401 5:+78763069 None:intergenic
GAGCCATTTCACACATGCCT+AGG 0.590478 5:+78761492 None:intergenic
GAGGTTAGACCACCAAGTGT+TGG 0.595310 5:+78761323 None:intergenic
TCTCTGGATAACTTTCCCAC+TGG 0.595880 5:-78763084 MsG0580028346.01.T01:CDS
ACAATGTCTTACACCGATCA+CGG 0.597001 5:-78763312 MsG0580028346.01.T01:CDS
GTTGTCCGTCCAACACTTGG+TGG 0.598939 5:-78761332 MsG0580028346.01.T01:CDS
GTCAACATGGAGTAGCAACA+AGG 0.599705 5:-78758901 MsG0580028346.01.T01:three_prime_UTR
GCGTTGTAGGTATTCGTACT+CGG 0.602212 5:-78759164 MsG0580028346.01.T01:intron
AAAGATAGACTATACCTGGT+TGG 0.603212 5:+78759953 None:intergenic
GAGAGATAGGAATAACATTG+GGG 0.603797 5:-78761945 MsG0580028346.01.T01:CDS
TTCGACAGGAAGCAGGCCAA+TGG 0.610598 5:-78761441 MsG0580028346.01.T01:CDS
CATTCAATCATCACCCTCGT+CGG 0.611397 5:-78763219 MsG0580028346.01.T01:CDS
AAGATCTAGAGGAAGACAAG+AGG 0.616120 5:-78758988 MsG0580028346.01.T01:CDS
GGCCAATAACAGCAGTAATG+TGG 0.616874 5:+78761513 None:intergenic
GATGCAACAGAAAACAGGGT+TGG 0.617821 5:-78761990 MsG0580028346.01.T01:CDS
GGTTACCTGAAGCTTCTCAA+GGG 0.620369 5:+78761127 None:intergenic
TCATTCAGCTTCTAAATCTG+AGG 0.628086 5:-78758850 MsG0580028346.01.T01:three_prime_UTR
GAACACGGCGGAGATTGAAG+AGG 0.632040 5:+78763257 None:intergenic
TTAGACCACCAAGTGTTGGA+CGG 0.634906 5:+78761327 None:intergenic
CGGCGGAGATTGAAGAGGGG+TGG 0.639721 5:+78763262 None:intergenic
TGATGATTGAATGGAAAGTG+AGG 0.642371 5:+78763229 None:intergenic
CCTGATGAAGGATTTACCAG+TGG 0.643835 5:+78763068 None:intergenic
GAAAGTGAGGTAGAGGAACA+CGG 0.648209 5:+78763242 None:intergenic
CAATGCATCAGACCCTTTAG+GGG 0.650184 5:-78760074 MsG0580028346.01.T01:CDS
CGTGAATGGAAGCACCGACG+AGG 0.655228 5:+78763205 None:intergenic
ATCCGGATGGTTATCTACCG+GGG 0.661202 5:-78761652 MsG0580028346.01.T01:CDS
CCTGGTTGGATTTCGAGATG+GGG 0.662189 5:+78759967 None:intergenic
CTGTCAAGAAGACAGTGTCA+CGG 0.669781 5:-78761388 MsG0580028346.01.T01:CDS
GGACCTAAATGATGTCAACA+TGG 0.672190 5:-78758914 MsG0580028346.01.T01:three_prime_UTR
CTTGACAGCAGTGAAAGTCA+CGG 0.674323 5:+78761403 None:intergenic
GTTCGATGCAACAGAAAACA+GGG 0.675016 5:-78761994 MsG0580028346.01.T01:CDS
GTGAATGGAAGCACCGACGA+GGG 0.675589 5:+78763206 None:intergenic
GCATGTGTGAAATGGCTCTG+TGG 0.681333 5:-78761487 MsG0580028346.01.T01:CDS
TCAACATGGAGTAGCAACAA+GGG 0.681457 5:-78758900 MsG0580028346.01.T01:three_prime_UTR
CAGACCCTTTAGGGGAACTG+TGG 0.683354 5:-78760066 MsG0580028346.01.T01:CDS
GAGAACCCGGATGAACCGAA+CGG 0.684657 5:-78761836 MsG0580028346.01.T01:CDS
TTGAGTCTATCAACTTCCGG+AGG 0.698930 5:-78762042 MsG0580028346.01.T01:CDS
ACAAAATGAAGAGACTAACA+TGG 0.708836 5:-78761783 MsG0580028346.01.T01:CDS
ACATGGAGTAGCAACAAGGG+AGG 0.715791 5:-78758897 MsG0580028346.01.T01:three_prime_UTR
ACTGTGTGGAGAAATCCGGA+TGG 0.728838 5:-78761665 MsG0580028346.01.T01:CDS
AGAGATAGGAATAACATTGG+GGG 0.733319 5:-78761944 MsG0580028346.01.T01:CDS
TGATCCTGAACTGAAGGACA+CGG 0.757055 5:-78761702 MsG0580028346.01.T01:CDS
TGATTTCTGGAAGAACTGTG+TGG 0.768219 5:-78761679 MsG0580028346.01.T01:CDS
ATGTCTTACACCGATCACGG+CGG 0.778979 5:-78763309 MsG0580028346.01.T01:CDS
ACACGGCGGAGATTGAAGAG+GGG 0.787935 5:+78763259 None:intergenic
AGTGAGGTAGAGGAACACGG+CGG 0.841057 5:+78763245 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTCAATATAATAATTGAA+GGG + Chr5:78762177-78762196 None:intergenic 10.0%
!!! TTTTTCAATATAATAATTGA+AGG + Chr5:78762178-78762197 None:intergenic 10.0%
!! AAAAACTAATAACTTAAGAA+TGG - Chr5:78761421-78761440 MsG0580028346.01.T01:CDS 15.0%
!! TATATTGAAAAAAATTGACT+TGG - Chr5:78762186-78762205 MsG0580028346.01.T01:intron 15.0%
!!! TTGATCTGTTTTTTTTTTTT+TGG - Chr5:78758976-78758995 MsG0580028346.01.T01:exon 15.0%
!! AAGTTATACCTGATTTAATA+GGG + Chr5:78761508-78761527 None:intergenic 20.0%
!! AATATGCTAATGTTAATGTT+AGG - Chr5:78759897-78759916 MsG0580028346.01.T01:intron 20.0%
!! ATAAACGATTATCATATAAG+TGG - Chr5:78761119-78761138 MsG0580028346.01.T01:intron 20.0%
!! ATCAAATCAAATACTGAAAA+CGG + Chr5:78758961-78758980 None:intergenic 20.0%
!! ATGAAATGAGAAAAACAAAT+TGG - Chr5:78759002-78759021 MsG0580028346.01.T01:CDS 20.0%
!! ATGATAATCGTTTATGTTAT+TGG + Chr5:78761114-78761133 None:intergenic 20.0%
!! GTAGAAAACGTAAATAATAA+TGG - Chr5:78762053-78762072 MsG0580028346.01.T01:intron 20.0%
!! TATAAGTAGTAAGATTGATT+CGG - Chr5:78762500-78762519 MsG0580028346.01.T01:intron 20.0%
!! TATTATAACAAACAACTGAT+TGG - Chr5:78759575-78759594 MsG0580028346.01.T01:intron 20.0%
!! TGAAATGAGAAAAACAAATT+GGG - Chr5:78759003-78759022 MsG0580028346.01.T01:CDS 20.0%
!!! AATGTGTTGATTTGTTTATT+TGG - Chr5:78759119-78759138 MsG0580028346.01.T01:CDS 20.0%
!!! AATTCTAGAAATTCATATAC+TGG + Chr5:78760970-78760989 None:intergenic 20.0%
!!! AGTATATGAATTTCTAGAAT+TGG - Chr5:78760969-78760988 MsG0580028346.01.T01:intron 20.0%
!!! TAGTCGAATTTTACTTATTT+GGG + Chr5:78761733-78761752 None:intergenic 20.0%
! AAACCATAAAAAGTCATCAA+TGG + Chr5:78760346-78760365 None:intergenic 25.0%
! AAACCGTTCATAATCAATAT+TGG - Chr5:78762151-78762170 MsG0580028346.01.T01:intron 25.0%
! AAATACTGAAAACGGTAAAA+AGG + Chr5:78758953-78758972 None:intergenic 25.0%
! ACTGTTGATATTAATAGTAC+TGG - Chr5:78760211-78760230 MsG0580028346.01.T01:intron 25.0%
! AGTTATACCTGATTTAATAG+GGG + Chr5:78761507-78761526 None:intergenic 25.0%
! ATCTCTATAAAGAACAGAAA+AGG + Chr5:78759693-78759712 None:intergenic 25.0%
! ATGAGAAACTTTAAACAAGT+AGG - Chr5:78759727-78759746 MsG0580028346.01.T01:intron 25.0%
! CAAGTTATACCTGATTTAAT+AGG + Chr5:78761509-78761528 None:intergenic 25.0%
! CTGTTGATATTAATAGTACT+GGG - Chr5:78760212-78760231 MsG0580028346.01.T01:intron 25.0%
! GAATTATTACTGCATAACAA+AGG - Chr5:78761047-78761066 MsG0580028346.01.T01:intron 25.0%
! GCATAACAAAGGAATAAATA+AGG - Chr5:78761058-78761077 MsG0580028346.01.T01:intron 25.0%
! GGTTGAAGCTATAATAATTA+AGG - Chr5:78759994-78760013 MsG0580028346.01.T01:CDS 25.0%
! GTAGTTGATCAAATATGATA+TGG - Chr5:78759853-78759872 MsG0580028346.01.T01:intron 25.0%
! GTTATGCAGTAATAATTCTT+TGG + Chr5:78761045-78761064 None:intergenic 25.0%
! TAAATCAAATCCCAAAAAAG+AGG - Chr5:78762236-78762255 MsG0580028346.01.T01:intron 25.0%
! TAATAATTAAGGTGAGAGAT+AGG - Chr5:78760005-78760024 MsG0580028346.01.T01:CDS 25.0%
! TCATTATCAATATGAGACAA+AGG + Chr5:78759204-78759223 None:intergenic 25.0%
! TGAGAAACTTTAAACAAGTA+GGG - Chr5:78759728-78759747 MsG0580028346.01.T01:intron 25.0%
! TGCTAACATGATTCTTTAAA+CGG - Chr5:78759539-78759558 MsG0580028346.01.T01:intron 25.0%
! TGTTCTTTATAGAGATAACT+TGG - Chr5:78759697-78759716 MsG0580028346.01.T01:intron 25.0%
! TTATAATTGAGTGATAACTG+TGG - Chr5:78759298-78759317 MsG0580028346.01.T01:intron 25.0%
!! AACTAAGATCATTGTTTTCT+TGG - Chr5:78761455-78761474 MsG0580028346.01.T01:CDS 25.0%
!! AGTCGAATTTTACTTATTTG+GGG + Chr5:78761732-78761751 None:intergenic 25.0%
!! ATCTTCTTTTTGTAAACATG+CGG + Chr5:78759823-78759842 None:intergenic 25.0%
!! CTAGTCGAATTTTACTTATT+TGG + Chr5:78761734-78761753 None:intergenic 25.0%
!! TATTACATTGACACTTCTTT+TGG - Chr5:78759503-78759522 MsG0580028346.01.T01:intron 25.0%
!! TATTTACGTTTTCTACTTCA+CGG + Chr5:78762049-78762068 None:intergenic 25.0%
!! TTCTCTGGTTTGTAAAATAT+TGG - Chr5:78760404-78760423 MsG0580028346.01.T01:intron 25.0%
!! TTTTTATGGTTTGATGTCTT+TGG - Chr5:78760354-78760373 MsG0580028346.01.T01:intron 25.0%
!!! AATCAGCTGATTTTTCAATT+TGG + Chr5:78762735-78762754 None:intergenic 25.0%
!!! AATTACATGTACCTCTTTTT+TGG + Chr5:78762250-78762269 None:intergenic 25.0%
!!! ATTACATGTACCTCTTTTTT+GGG + Chr5:78762249-78762268 None:intergenic 25.0%
AAAGAAGGTTCTTGTAAGTT+AGG - Chr5:78760088-78760107 MsG0580028346.01.T01:CDS 30.0%
AAAGGAATTTCAAATTACCG+CGG - Chr5:78762610-78762629 MsG0580028346.01.T01:intron 30.0%
AACAAATCGCAATTACACTA+TGG + Chr5:78762408-78762427 None:intergenic 30.0%
AAGCATTTGTGAAACTGTTT+GGG + Chr5:78761298-78761317 None:intergenic 30.0%
AATAAGCTGAAAACAGCTTA+CGG - Chr5:78761243-78761262 MsG0580028346.01.T01:CDS 30.0%
AATATACTCCATGAGATTTG+AGG - Chr5:78762647-78762666 MsG0580028346.01.T01:intron 30.0%
ACAAAATGAAGAGACTAACA+TGG - Chr5:78760180-78760199 MsG0580028346.01.T01:intron 30.0%
ACATGTCACAGTAACAATTA+TGG + Chr5:78761019-78761038 None:intergenic 30.0%
ACTGAAGAATACATTTCTGT+AGG + Chr5:78761795-78761814 None:intergenic 30.0%
AGAAACTTTAAACAAGTAGG+GGG - Chr5:78759730-78759749 MsG0580028346.01.T01:intron 30.0%
AGACAGTGATTAAAGAAGTT+AGG + Chr5:78763013-78763032 None:intergenic 30.0%
AGAGAATGGTTAAACTCAAT+AGG + Chr5:78758864-78758883 None:intergenic 30.0%
CTATTTCCTAAATGTACTTG+GGG + Chr5:78761360-78761379 None:intergenic 30.0%
CTTGATTGATAGACTAACAT+AGG - Chr5:78762758-78762777 MsG0580028346.01.T01:intron 30.0%
GAAAGAGGATCAATATTCAA+TGG - Chr5:78763090-78763109 MsG0580028346.01.T01:CDS 30.0%
GAGAAACTTTAAACAAGTAG+GGG - Chr5:78759729-78759748 MsG0580028346.01.T01:intron 30.0%
GCTAACATGATTCTTTAAAC+GGG - Chr5:78759540-78759559 MsG0580028346.01.T01:intron 30.0%
GGTAATATTAATGACTTCTC+TGG - Chr5:78760730-78760749 MsG0580028346.01.T01:intron 30.0%
TAAGCATTTGTGAAACTGTT+TGG + Chr5:78761299-78761318 None:intergenic 30.0%
TACATTTCCCCTATTAAATC+AGG - Chr5:78761497-78761516 MsG0580028346.01.T01:CDS 30.0%
TACATTTCTGTAGGTTAATC+AGG + Chr5:78761786-78761805 None:intergenic 30.0%
TATGCAAATTTCAATTCGAC+AGG - Chr5:78760508-78760527 MsG0580028346.01.T01:intron 30.0%
TATTGAGTTTAACCATTCTC+TGG - Chr5:78758863-78758882 MsG0580028346.01.T01:three_prime_UTR 30.0%
TCGAAAACATTAAGCAAGTA+GGG - Chr5:78759615-78759634 MsG0580028346.01.T01:intron 30.0%
TCTCACAAGTTAACAAGTAA+GGG + Chr5:78760923-78760942 None:intergenic 30.0%
TGAGAGATAGGAATAACATT+GGG - Chr5:78760017-78760036 MsG0580028346.01.T01:CDS 30.0%
TTAGCACAGTAAAAATGAGA+AGG - Chr5:78763164-78763183 MsG0580028346.01.T01:CDS 30.0%
! AGCTATTTCCTAAATGTACT+TGG + Chr5:78761362-78761381 None:intergenic 30.0%
! ATTAGTTTGAATTTCATCCG+CGG + Chr5:78762630-78762649 None:intergenic 30.0%
! GCTATTTCCTAAATGTACTT+GGG + Chr5:78761361-78761380 None:intergenic 30.0%
! TAACTTGCATTTCAGTTTCT+TGG - Chr5:78761522-78761541 MsG0580028346.01.T01:CDS 30.0%
! TTAGAAAGTATGATGTTCCA+AGG - Chr5:78761391-78761410 MsG0580028346.01.T01:CDS 30.0%
! TTTTGTCTATACACGAGAAA+AGG + Chr5:78759649-78759668 None:intergenic 30.0%
!! AATTCGTTTTTCTTTCATGG+TGG - Chr5:78758813-78758832 MsG0580028346.01.T01:three_prime_UTR 30.0%
!! ATGAATTTCTAGAATTGGCA+CGG - Chr5:78760974-78760993 MsG0580028346.01.T01:intron 30.0%
!! ATGCCATTGATGACTTTTTA+TGG - Chr5:78760340-78760359 MsG0580028346.01.T01:intron 30.0%
!! GCTAATTCGTTTTTCTTTCA+TGG - Chr5:78758810-78758829 MsG0580028346.01.T01:three_prime_UTR 30.0%
!! GTATGACTTTGAGATAGAAT+TGG - Chr5:78759466-78759485 MsG0580028346.01.T01:intron 30.0%
!!! ATTAGTTTTTGATCCATCCT+TGG + Chr5:78761411-78761430 None:intergenic 30.0%
AAAAACGTTTGCAAGCGTTT+CGG + Chr5:78760154-78760173 None:intergenic 35.0%
AAAGATAGACTATACCTGGT+TGG + Chr5:78762013-78762032 None:intergenic 35.0%
AAAGTATGATGTTCCAAGGA+TGG - Chr5:78761395-78761414 MsG0580028346.01.T01:CDS 35.0%
AACAGAAAAGGTTGAAAACC+TGG + Chr5:78759681-78759700 None:intergenic 35.0%
AAGTTGTTTATGTGAGTTCC+AGG - Chr5:78759377-78759396 MsG0580028346.01.T01:intron 35.0%
ACCATACAAGACCAAGAAAA+AGG + Chr5:78760384-78760403 None:intergenic 35.0%
ACTCCATGTTGACATCATTT+AGG + Chr5:78763055-78763074 None:intergenic 35.0%
AGAAAAACGAATTAGCACGA+CGG + Chr5:78758806-78758825 None:intergenic 35.0%
AGAGATAGGAATAACATTGG+GGG - Chr5:78760019-78760038 MsG0580028346.01.T01:CDS 35.0%
AGTTGTTTATGTGAGTTCCA+GGG - Chr5:78759378-78759397 MsG0580028346.01.T01:intron 35.0%
ATAAACAACTTCGAATTCCC+AGG + Chr5:78759368-78759387 None:intergenic 35.0%
CAGAAAAGATAGACTATACC+TGG + Chr5:78762017-78762036 None:intergenic 35.0%
CGAAAACATTAAGCAAGTAG+GGG - Chr5:78759616-78759635 MsG0580028346.01.T01:intron 35.0%
CTAATAACTACAAGTGTCTC+AGG - Chr5:78761836-78761855 MsG0580028346.01.T01:CDS 35.0%
CTCGAAAACATTAAGCAAGT+AGG - Chr5:78759614-78759633 MsG0580028346.01.T01:intron 35.0%
CTCTCACAAGTTAACAAGTA+AGG + Chr5:78760924-78760943 None:intergenic 35.0%
CTGCTTTCTGTATTATGGAT+TGG - Chr5:78761657-78761676 MsG0580028346.01.T01:CDS 35.0%
CTTATTTCCATAAGCTCTCT+AGG + Chr5:78761229-78761248 None:intergenic 35.0%
GAAAACATTAAGCAAGTAGG+GGG - Chr5:78759617-78759636 MsG0580028346.01.T01:intron 35.0%
GAAACAAGTAAAACCGAGTT+GGG - Chr5:78759780-78759799 MsG0580028346.01.T01:intron 35.0%
GAGAGATAGGAATAACATTG+GGG - Chr5:78760018-78760037 MsG0580028346.01.T01:CDS 35.0%
GCCAATGGTAATTACAGTAT+GGG - Chr5:78760537-78760556 MsG0580028346.01.T01:intron 35.0%
GCTACAGATCATCATGTATT+TGG - Chr5:78762944-78762963 MsG0580028346.01.T01:intron 35.0%
GCTAGAAAGAAAGGATAGAA+AGG - Chr5:78762904-78762923 MsG0580028346.01.T01:intron 35.0%
GGAATAAATAAGGCTGTGTT+TGG - Chr5:78761068-78761087 MsG0580028346.01.T01:intron 35.0%
GTGAGAGATAGGAATAACAT+TGG - Chr5:78760016-78760035 MsG0580028346.01.T01:CDS 35.0%
TACAAATTCTCTTGCAGTGA+CGG - Chr5:78761632-78761651 MsG0580028346.01.T01:CDS 35.0%
TACCACATTACTGCTGTTAT+TGG - Chr5:78760448-78760467 MsG0580028346.01.T01:intron 35.0%
TAGACAAAACCAGTAAAACC+AGG - Chr5:78759660-78759679 MsG0580028346.01.T01:intron 35.0%
TCAAATTAGTCAATCCCAAC+AGG - Chr5:78761334-78761353 MsG0580028346.01.T01:CDS 35.0%
TCATTCAGCTTCTAAATCTG+AGG - Chr5:78763113-78763132 MsG0580028346.01.T01:CDS 35.0%
TGATGATTGAATGGAAAGTG+AGG + Chr5:78758737-78758756 None:intergenic 35.0%
TGATTATGAACGGTTTCCAA+TGG + Chr5:78762147-78762166 None:intergenic 35.0%
TGGAGTTATTGAAGATCTAG+AGG - Chr5:78762964-78762983 MsG0580028346.01.T01:intron 35.0%
TTCGTCTATACACAAGAGAA+AGG + Chr5:78759763-78759782 None:intergenic 35.0%
TTCGTGCACGGTTATAAATA+TGG - Chr5:78760894-78760913 MsG0580028346.01.T01:intron 35.0%
! ATAGGAAGTGACATTTTACG+TGG - Chr5:78762776-78762795 MsG0580028346.01.T01:intron 35.0%
! ATGACTTCTCTGGAAAAACA+AGG - Chr5:78760740-78760759 MsG0580028346.01.T01:intron 35.0%
! GAAGCATTATTACCTGATGA+AGG + Chr5:78758910-78758929 None:intergenic 35.0%
! GCACAGATTAGAAAAAGTAC+CGG - Chr5:78761585-78761604 MsG0580028346.01.T01:CDS 35.0%
! GGGCCAATATTGATTATGAA+CGG + Chr5:78762157-78762176 None:intergenic 35.0%
! TAGGAAGTGACATTTTACGT+GGG - Chr5:78762777-78762796 MsG0580028346.01.T01:intron 35.0%
! TCTATCCTTTCTTTCTAGCA+TGG + Chr5:78762903-78762922 None:intergenic 35.0%
! TGGATGCTTGCTTTATTCTT+TGG - Chr5:78760791-78760810 MsG0580028346.01.T01:intron 35.0%
!! CTTACTTGTTAACTTGTGAG+AGG - Chr5:78760922-78760941 MsG0580028346.01.T01:intron 35.0%
!! CTTCTTTTGGTGGTTTCTAT+GGG - Chr5:78760601-78760620 MsG0580028346.01.T01:intron 35.0%
!! TCTTCTTTTGGTGGTTTCTA+TGG - Chr5:78760600-78760619 MsG0580028346.01.T01:intron 35.0%
!! TCTTTGGCTTACCTTTTTCT+TGG - Chr5:78760370-78760389 MsG0580028346.01.T01:intron 35.0%
!! TGAATTTCTAGAATTGGCAC+GGG - Chr5:78760975-78760994 MsG0580028346.01.T01:intron 35.0%
!! TGATTGGTCTGAGTGATAAT+GGG - Chr5:78759591-78759610 MsG0580028346.01.T01:intron 35.0%
!! TGTATTATGGATTGGCTATG+AGG - Chr5:78761665-78761684 MsG0580028346.01.T01:CDS 35.0%
!!! ACCTTTTTCTTGGTCTTGTA+TGG - Chr5:78760380-78760399 MsG0580028346.01.T01:intron 35.0%
AAAAGTCCTTCTTCTTGGTG+TGG - Chr5:78760663-78760682 MsG0580028346.01.T01:intron 40.0%
AAACTGTTTGGGAGAGCTTA+TGG + Chr5:78761287-78761306 None:intergenic 40.0%
AAATCCGGATGGTTATCTAC+CGG - Chr5:78760309-78760328 MsG0580028346.01.T01:intron 40.0%
AAGAACTGTGTGGAGAAATC+CGG - Chr5:78760294-78760313 MsG0580028346.01.T01:intron 40.0%
AAGATACCCAAAAAGGAGCT+AGG - Chr5:78762078-78762097 MsG0580028346.01.T01:intron 40.0%
AAGATCTAGAGGAAGACAAG+AGG - Chr5:78762975-78762994 MsG0580028346.01.T01:intron 40.0%
AATACACCACACCAAGAAGA+AGG + Chr5:78760672-78760691 None:intergenic 40.0%
AATGGCGAAGATACCCAAAA+AGG - Chr5:78762071-78762090 MsG0580028346.01.T01:intron 40.0%
ACAATGTCTTACACCGATCA+CGG - Chr5:78758651-78758670 MsG0580028346.01.T01:three_prime_UTR 40.0%
ACCTCAAAAGTCCTTCTTCT+TGG - Chr5:78760658-78760677 MsG0580028346.01.T01:intron 40.0%
AGAGAATGCAGATCACTATC+AGG + Chr5:78761973-78761992 None:intergenic 40.0%
AGATCTAGAGGAAGACAAGA+GGG - Chr5:78762976-78762995 MsG0580028346.01.T01:intron 40.0%
AGCTATAGCCTCAAATCTCA+TGG + Chr5:78762658-78762677 None:intergenic 40.0%
AGGTTCTTGTAAGTTAGGAG+AGG - Chr5:78760093-78760112 MsG0580028346.01.T01:CDS 40.0%
AGTTCGATGCAACAGAAAAC+AGG - Chr5:78759968-78759987 MsG0580028346.01.T01:CDS 40.0%
ATTTCAATTCGACAGGAAGC+AGG - Chr5:78760515-78760534 MsG0580028346.01.T01:intron 40.0%
CACTGTCTCTTTGTTCACTT+GGG - Chr5:78763025-78763044 MsG0580028346.01.T01:intron 40.0%
CGAAACAAGTAAAACCGAGT+TGG - Chr5:78759779-78759798 MsG0580028346.01.T01:intron 40.0%
CGCAATTACACTATGGTTCT+GGG + Chr5:78762401-78762420 None:intergenic 40.0%
CGGTTTCCAATGGTTATGAA+TGG + Chr5:78762137-78762156 None:intergenic 40.0%
CTGATGAAGGATTTACCAGT+GGG + Chr5:78758897-78758916 None:intergenic 40.0%
GACAAAAGAGTCTGCTCAAA+AGG - Chr5:78759943-78759962 MsG0580028346.01.T01:intron 40.0%
GATAGTGATCTGCATTCTCT+GGG - Chr5:78761973-78761992 MsG0580028346.01.T01:CDS 40.0%
GCCCATACTGTAATTACCAT+TGG + Chr5:78760541-78760560 None:intergenic 40.0%
GGACCTAAATGATGTCAACA+TGG - Chr5:78763049-78763068 MsG0580028346.01.T01:intron 40.0%
GGCCAATGGTAATTACAGTA+TGG - Chr5:78760536-78760555 MsG0580028346.01.T01:intron 40.0%
GGTGTTCAACCTAGCAATAT+TGG + Chr5:78759329-78759348 None:intergenic 40.0%
GGTTTGAGTCTATCAACTTC+CGG - Chr5:78759918-78759937 MsG0580028346.01.T01:intron 40.0%
GTCTACCATGCTAGAAAGAA+AGG - Chr5:78762895-78762914 MsG0580028346.01.T01:intron 40.0%
GTTCGATGCAACAGAAAACA+GGG - Chr5:78759969-78759988 MsG0580028346.01.T01:CDS 40.0%
TAAAACCCTTGAGAAGCTTC+AGG - Chr5:78760831-78760850 MsG0580028346.01.T01:intron 40.0%
TCAACATGGAGTAGCAACAA+GGG - Chr5:78763063-78763082 MsG0580028346.01.T01:intron 40.0%
TCAATGCATCAGACCCTTTA+GGG - Chr5:78761888-78761907 MsG0580028346.01.T01:CDS 40.0%
TCACTGTCTCTTTGTTCACT+TGG - Chr5:78763024-78763043 MsG0580028346.01.T01:intron 40.0%
TCAGGTCCATTCATAACCAT+TGG - Chr5:78762128-78762147 MsG0580028346.01.T01:intron 40.0%
TCGCAATTACACTATGGTTC+TGG + Chr5:78762402-78762421 None:intergenic 40.0%
TGGGAAAGTTATCCAGAGAA+TGG + Chr5:78758878-78758897 None:intergenic 40.0%
TTCAATGCATCAGACCCTTT+AGG - Chr5:78761887-78761906 MsG0580028346.01.T01:CDS 40.0%
TTGAATGGAAAGTGAGGTAG+AGG + Chr5:78758731-78758750 None:intergenic 40.0%
! ACCAAGAAGAAGGACTTTTG+AGG + Chr5:78760662-78760681 None:intergenic 40.0%
! ACCTAATCCTAGCTCCTTTT+TGG + Chr5:78762088-78762107 None:intergenic 40.0%
! ACTCAATTTTCCATACGGTC+AGG - Chr5:78762110-78762129 MsG0580028346.01.T01:intron 40.0%
! ATTACTGCTGTTATTGGCCT+AGG - Chr5:78760454-78760473 MsG0580028346.01.T01:intron 40.0%
! CCTAATCCTAGCTCCTTTTT+GGG + Chr5:78762087-78762106 None:intergenic 40.0%
! CCTGTACAACTCAAGTTTTC+CGG + Chr5:78761607-78761626 None:intergenic 40.0%
! CGAGACAAGTATTGCATACT+AGG + Chr5:78760860-78760879 None:intergenic 40.0%
! CTAGGTTGAACACCTTTACT+CGG - Chr5:78759335-78759354 MsG0580028346.01.T01:intron 40.0%
! GGTGCACTCAATTTTCCATA+CGG - Chr5:78762105-78762124 MsG0580028346.01.T01:intron 40.0%
! GTGCTATAGTGCTGTTATAG+CGG - Chr5:78762342-78762361 MsG0580028346.01.T01:intron 40.0%
! GTTTTGTGATCCTGAACTGA+AGG - Chr5:78760255-78760274 MsG0580028346.01.T01:intron 40.0%
! TAGGTTGAACACCTTTACTC+GGG - Chr5:78759336-78759355 MsG0580028346.01.T01:intron 40.0%
! TCTTTTTGTAAACATGCGGC+AGG + Chr5:78759819-78759838 None:intergenic 40.0%
! TGATAGTGATCTGCATTCTC+TGG - Chr5:78761972-78761991 MsG0580028346.01.T01:CDS 40.0%
! TGATTTCTGGAAGAACTGTG+TGG - Chr5:78760284-78760303 MsG0580028346.01.T01:intron 40.0%
! TGGAAAAACAAGGCTTTTCC+TGG - Chr5:78760750-78760769 MsG0580028346.01.T01:intron 40.0%
! TTCTTTCATGGTGGTAGTGA+AGG - Chr5:78758822-78758841 MsG0580028346.01.T01:three_prime_UTR 40.0%
!! CTGATTGGTCTGAGTGATAA+TGG - Chr5:78759590-78759609 MsG0580028346.01.T01:intron 40.0%
!! GGTTCTGGGATACACTATTT+AGG + Chr5:78762387-78762406 None:intergenic 40.0%
!! TCTTGGTGTGGTGTATTTTG+TGG - Chr5:78760675-78760694 MsG0580028346.01.T01:intron 40.0%
!! TGATTCTGAGCTTTTCAGGA+TGG - Chr5:78763136-78763155 MsG0580028346.01.T01:CDS 40.0%
!! TTCGTTTTGGTAGTCGTGAA+TGG + Chr5:78758775-78758794 None:intergenic 40.0%
!! TTGGTCTTGTATGGTTTCTC+TGG - Chr5:78760389-78760408 MsG0580028346.01.T01:intron 40.0%
!!! CGCTTGCAAACGTTTTTTGA+AGG - Chr5:78760157-78760176 MsG0580028346.01.T01:intron 40.0%
!!! GGTTGAAAACCTGGTTTTAC+TGG + Chr5:78759672-78759691 None:intergenic 40.0%
!!! TTTTGGTTGACTTTGGAACG+AGG + Chr5:78762584-78762603 None:intergenic 40.0%
AAATGTACTTGGGGCCTGTT+GGG + Chr5:78761351-78761370 None:intergenic 45.0%
AACAGGCCCCAAGTACATTT+AGG - Chr5:78761351-78761370 MsG0580028346.01.T01:CDS 45.0%
AATCCGGATGGTTATCTACC+GGG - Chr5:78760310-78760329 MsG0580028346.01.T01:intron 45.0%
ACCTGGTTGGATTTCGAGAT+GGG + Chr5:78762000-78762019 None:intergenic 45.0%
AGCACTATAGCACTATTGCG+TGG + Chr5:78762335-78762354 None:intergenic 45.0%
AGGTTACCTGAAGCTTCTCA+AGG + Chr5:78760840-78760859 None:intergenic 45.0%
ATCAATGGCATCATCTTCCC+CGG + Chr5:78760331-78760350 None:intergenic 45.0%
ATGTGAGTTCCAGGGTTTGT+TGG - Chr5:78759386-78759405 MsG0580028346.01.T01:intron 45.0%
CAAGCAAAGTCCAGAAAGCT+GGG + Chr5:78761940-78761959 None:intergenic 45.0%
CAATGCATCAGACCCTTTAG+GGG - Chr5:78761889-78761908 MsG0580028346.01.T01:CDS 45.0%
CATTCAATCATCACCCTCGT+CGG - Chr5:78758744-78758763 MsG0580028346.01.T01:three_prime_UTR 45.0%
CCACTGGTAAATCCTTCATC+AGG - Chr5:78758895-78758914 MsG0580028346.01.T01:three_prime_UTR 45.0%
CCCAAAAAGGAGCTAGGATT+AGG - Chr5:78762084-78762103 MsG0580028346.01.T01:intron 45.0%
CCTGATGAAGGATTTACCAG+TGG + Chr5:78758898-78758917 None:intergenic 45.0%
CGATCCTCTATTGACAACAC+TGG + Chr5:78762284-78762303 None:intergenic 45.0%
CTGACCAGTGTTGTCAATAG+AGG - Chr5:78762277-78762296 MsG0580028346.01.T01:intron 45.0%
CTGTCAAGAAGACAGTGTCA+CGG - Chr5:78760575-78760594 MsG0580028346.01.T01:intron 45.0%
CTTGACAGCAGTGAAAGTCA+CGG + Chr5:78760563-78760582 None:intergenic 45.0%
CTTTACTCGGGTTTGAACCT+GGG - Chr5:78759348-78759367 MsG0580028346.01.T01:intron 45.0%
GAAAGTGAGGTAGAGGAACA+CGG + Chr5:78758724-78758743 None:intergenic 45.0%
GAACCTTCTTTAGCAAGCTC+TGG + Chr5:78760079-78760098 None:intergenic 45.0%
GAAGACAAGAGGGAGTGATT+TGG - Chr5:78762986-78763005 MsG0580028346.01.T01:intron 45.0%
GAGCTATCCTAGAGAGCTTA+TGG - Chr5:78761219-78761238 MsG0580028346.01.T01:CDS 45.0%
GATGCAACAGAAAACAGGGT+TGG - Chr5:78759973-78759992 MsG0580028346.01.T01:CDS 45.0%
GCGTTGTAGGTATTCGTACT+CGG - Chr5:78762799-78762818 MsG0580028346.01.T01:intron 45.0%
GGAAGTGGAGTTAAGATGTC+TGG - Chr5:78762866-78762885 MsG0580028346.01.T01:intron 45.0%
GGCCAATAACAGCAGTAATG+TGG + Chr5:78760453-78760472 None:intergenic 45.0%
GGTTACCTGAAGCTTCTCAA+GGG + Chr5:78760839-78760858 None:intergenic 45.0%
GTATTCGTACTCGGAAGAGA+CGG - Chr5:78762808-78762827 MsG0580028346.01.T01:intron 45.0%
GTCAACATGGAGTAGCAACA+AGG - Chr5:78763062-78763081 MsG0580028346.01.T01:intron 45.0%
GTGGCAATGCCAATATTGCT+AGG - Chr5:78759317-78759336 MsG0580028346.01.T01:intron 45.0%
TAAATGTACTTGGGGCCTGT+TGG + Chr5:78761352-78761371 None:intergenic 45.0%
TACCTGGTTGGATTTCGAGA+TGG + Chr5:78762001-78762020 None:intergenic 45.0%
TATAACCGTGCACGAATGAC+AGG + Chr5:78760890-78760909 None:intergenic 45.0%
TATGAATGGACCTGACCGTA+TGG + Chr5:78762123-78762142 None:intergenic 45.0%
TATTCGTACTCGGAAGAGAC+GGG - Chr5:78762809-78762828 MsG0580028346.01.T01:intron 45.0%
TCTCTGGATAACTTTCCCAC+TGG - Chr5:78758879-78758898 MsG0580028346.01.T01:three_prime_UTR 45.0%
TGATCCTGAACTGAAGGACA+CGG - Chr5:78760261-78760280 MsG0580028346.01.T01:intron 45.0%
TGTCTCTTTGTTCACTTGGG+AGG - Chr5:78763028-78763047 MsG0580028346.01.T01:intron 45.0%
TTGAGTCTATCAACTTCCGG+AGG - Chr5:78759921-78759940 MsG0580028346.01.T01:intron 45.0%
TTTGTAAACATGCGGCAGGT+GGG + Chr5:78759815-78759834 None:intergenic 45.0%
! AAGTAAAACCGAGTTGGGTG+CGG - Chr5:78759785-78759804 MsG0580028346.01.T01:intron 45.0%
! AGTGTCACGGCTTCTTCTTT+TGG - Chr5:78760588-78760607 MsG0580028346.01.T01:intron 45.0%
! CCGGAAAACTTGAGTTGTAC+AGG - Chr5:78761604-78761623 MsG0580028346.01.T01:CDS 45.0%
! GACGGATGAACGTTTCGTTT+TGG + Chr5:78758788-78758807 None:intergenic 45.0%
! GAGGTGATTCTGAGCTTTTC+AGG - Chr5:78763132-78763151 MsG0580028346.01.T01:CDS 45.0%
! TGACTTGGAGAGAGATAGAG+AGG - Chr5:78762201-78762220 MsG0580028346.01.T01:intron 45.0%
! TTGGTGGTTTCTATGGGCTA+TGG - Chr5:78760607-78760626 MsG0580028346.01.T01:intron 45.0%
! TTTTGTAAACATGCGGCAGG+TGG + Chr5:78759816-78759835 None:intergenic 45.0%
!! ACACCAGAGCTTGCTAAAGA+AGG - Chr5:78760073-78760092 MsG0580028346.01.T01:CDS 45.0%
!! ACATTTTACGTGGGCGTTGT+AGG - Chr5:78762786-78762805 MsG0580028346.01.T01:intron 45.0%
!! CGGTGCTGCTTTCTGTATTA+TGG - Chr5:78761652-78761671 MsG0580028346.01.T01:CDS 45.0%
!! GACGGGAGATGATTTTGATG+AGG - Chr5:78762826-78762845 MsG0580028346.01.T01:intron 45.0%
!! TTAGACCACCAAGTGTTGGA+CGG + Chr5:78760639-78760658 None:intergenic 45.0%
!!! TGTTATATTATATTAAATTT+TGG - Chr5:78759082-78759101 MsG0580028346.01.T01:CDS 5.0%
AACACGGCGGAGATTGAAGA+GGG + Chr5:78758708-78758727 None:intergenic 50.0%
ACATGGAGTAGCAACAAGGG+AGG - Chr5:78763066-78763085 MsG0580028346.01.T01:intron 50.0%
ACGAAGTGACCAACAAACCC+TGG + Chr5:78759398-78759417 None:intergenic 50.0%
ACTGTGTGGAGAAATCCGGA+TGG - Chr5:78760298-78760317 MsG0580028346.01.T01:intron 50.0%
AGATTGAAGAGGGGTGGTTC+CGG + Chr5:78758698-78758717 None:intergenic 50.0%
AGCAACAAGGGAGGAGAAAG+AGG - Chr5:78763075-78763094 MsG0580028346.01.T01:CDS 50.0%
ATCACCGTGTCCTTCAGTTC+AGG + Chr5:78760268-78760287 None:intergenic 50.0%
ATCCGGATGGTTATCTACCG+GGG - Chr5:78760311-78760330 MsG0580028346.01.T01:intron 50.0%
ATGTCTTACACCGATCACGG+CGG - Chr5:78758654-78758673 MsG0580028346.01.T01:three_prime_UTR 50.0%
CAAAGTCCAGAAAGCTGGGA+TGG + Chr5:78761936-78761955 None:intergenic 50.0%
CCAGGTTCAAACCCGAGTAA+AGG + Chr5:78759350-78759369 None:intergenic 50.0%
CCTGGTTGGATTTCGAGATG+GGG + Chr5:78761999-78762018 None:intergenic 50.0%
CCTTTACTCGGGTTTGAACC+TGG - Chr5:78759347-78759366 MsG0580028346.01.T01:intron 50.0%
CGACGAGGGTGATGATTGAA+TGG + Chr5:78758746-78758765 None:intergenic 50.0%
CTGAAGGACACGGTGATTTC+TGG - Chr5:78760271-78760290 MsG0580028346.01.T01:intron 50.0%
CTTGAGCTGGTGGAACATCT+CGG - Chr5:78760709-78760728 MsG0580028346.01.T01:intron 50.0%
GAGCCATTTCACACATGCCT+AGG + Chr5:78760474-78760493 None:intergenic 50.0%
GAGGTTAGACCACCAAGTGT+TGG + Chr5:78760643-78760662 None:intergenic 50.0%
GCAAGCAAAGTCCAGAAAGC+TGG + Chr5:78761941-78761960 None:intergenic 50.0%
GGTTATCATCCGTGAGAACC+CGG - Chr5:78760114-78760133 MsG0580028346.01.T01:CDS 50.0%
TGGAGAGAGATAGAGAGGAC+TGG - Chr5:78762206-78762225 MsG0580028346.01.T01:intron 50.0%
TGGCCTAGGCATGTGTGAAA+TGG - Chr5:78760468-78760487 MsG0580028346.01.T01:intron 50.0%
TTCCCCGGTAGATAACCATC+CGG + Chr5:78760316-78760335 None:intergenic 50.0%
TTCGCCACAGTTCCCCTAAA+GGG + Chr5:78761904-78761923 None:intergenic 50.0%
! GAGCAGACTCTTTTGTCCTC+CGG + Chr5:78759940-78759959 None:intergenic 50.0%
! GCATGTGTGAAATGGCTCTG+TGG - Chr5:78760476-78760495 MsG0580028346.01.T01:intron 50.0%
! GTCACGGCTTCTTCTTTTGG+TGG - Chr5:78760591-78760610 MsG0580028346.01.T01:intron 50.0%
ACACGGCGGAGATTGAAGAG+GGG + Chr5:78758707-78758726 None:intergenic 55.0%
AGAACCCGGATGAACCGAAC+GGG - Chr5:78760128-78760147 MsG0580028346.01.T01:CDS 55.0%
AGTGAGGTAGAGGAACACGG+CGG + Chr5:78758721-78758740 None:intergenic 55.0%
CAAGCATCCAACAGAGCCAC+AGG + Chr5:78760781-78760800 None:intergenic 55.0%
CACCAGCTCAAGTGCTTCTG+AGG + Chr5:78760701-78760720 None:intergenic 55.0%
CCCCATCTCGAAATCCAACC+AGG - Chr5:78761996-78762015 MsG0580028346.01.T01:CDS 55.0%
CGTTGCCTGTCATTCGTGCA+CGG - Chr5:78760882-78760901 MsG0580028346.01.T01:intron 55.0%
CTTCGCCACAGTTCCCCTAA+AGG + Chr5:78761905-78761924 None:intergenic 55.0%
GAACACGGCGGAGATTGAAG+AGG + Chr5:78758709-78758728 None:intergenic 55.0%
GAGAACCCGGATGAACCGAA+CGG - Chr5:78760127-78760146 MsG0580028346.01.T01:CDS 55.0%
GAGGAAGCTGTCGCAGTTGT+TGG - Chr5:78762845-78762864 MsG0580028346.01.T01:intron 55.0%
GCTGTCGCAGTTGTTGGAAG+TGG - Chr5:78762851-78762870 MsG0580028346.01.T01:intron 55.0%
GGAGTTGTCCGTCCAACACT+TGG - Chr5:78760628-78760647 MsG0580028346.01.T01:intron 55.0%
GTTGTCCGTCCAACACTTGG+TGG - Chr5:78760631-78760650 MsG0580028346.01.T01:intron 55.0%
TCGGTTCATCCGGGTTCTCA+CGG + Chr5:78760126-78760145 None:intergenic 55.0%
TTCGACAGGAAGCAGGCCAA+TGG - Chr5:78760522-78760541 MsG0580028346.01.T01:intron 55.0%
! CAGACCCTTTAGGGGAACTG+TGG - Chr5:78761897-78761916 MsG0580028346.01.T01:CDS 55.0%
! GGAACTGTGGCGAAGAGCAT+GGG - Chr5:78761910-78761929 MsG0580028346.01.T01:CDS 55.0%
!! CTCAGAAGCACTTGAGCTGG+TGG - Chr5:78760699-78760718 MsG0580028346.01.T01:intron 55.0%
!! GTGAATGGAAGCACCGACGA+GGG + Chr5:78758760-78758779 None:intergenic 55.0%
AAGAGGGGTGGTTCCGGTGA+CGG + Chr5:78758692-78758711 None:intergenic 60.0%
CATGGGCCATCCCAGCTTTC+TGG - Chr5:78761927-78761946 MsG0580028346.01.T01:CDS 60.0%
GGGAACTGTGGCGAAGAGCA+TGG - Chr5:78761909-78761928 MsG0580028346.01.T01:CDS 60.0%
TGCAAGCGTTTCGGCCCGTT+CGG + Chr5:78760145-78760164 None:intergenic 60.0%
TGGGTTCTCCGCACCCAACT+CGG + Chr5:78759796-78759815 None:intergenic 60.0%
TTCGGCCCGTTCGGTTCATC+CGG + Chr5:78760136-78760155 None:intergenic 60.0%
!! CGTGAATGGAAGCACCGACG+AGG + Chr5:78758761-78758780 None:intergenic 60.0%
!! GGCCTCAGAAGCACTTGAGC+TGG - Chr5:78760696-78760715 MsG0580028346.01.T01:intron 60.0%
!!! GCTTTTCCTGGTGCTGCCTG+TGG - Chr5:78760762-78760781 MsG0580028346.01.T01:intron 60.0%
ACAGAGCCACAGGCAGCACC+AGG + Chr5:78760771-78760790 None:intergenic 65.0%
CGGCGGAGATTGAAGAGGGG+TGG + Chr5:78758704-78758723 None:intergenic 65.0%
TCGGCCCGTTCGGTTCATCC+GGG + Chr5:78760135-78760154 None:intergenic 65.0%
! GGTGCTGCCTGTGGCTCTGT+TGG - Chr5:78760771-78760790 MsG0580028346.01.T01:intron 65.0%
! GGTGGTTCCGGTGACGGTGA+CGG + Chr5:78758686-78758705 None:intergenic 65.0%
ACGGCGATCGCCGCCGTGAT+CGG + Chr5:78758667-78758686 None:intergenic 70.0%
GCGATCGCCGTCACCGTCAC+CGG - Chr5:78758676-78758695 MsG0580028346.01.T01:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
Chr5 gene 78758610 78763375 78758610 ID=MsG0580028346.01;Name=MsG0580028346.01
Chr5 mRNA 78758610 78763375 78758610 ID=MsG0580028346.01.T01;Parent=MsG0580028346.01;Name=MsG0580028346.01.T01;_AED=0.35;_eAED=0.35;_QI=44|0.66|0.5|1|0.66|0.5|4|372|534
Chr5 exon 78758610 78759177 78758610 ID=MsG0580028346.01.T01:exon:46726;Parent=MsG0580028346.01.T01
Chr5 exon 78759968 78760171 78759968 ID=MsG0580028346.01.T01:exon:46725;Parent=MsG0580028346.01.T01
Chr5 exon 78761125 78762066 78761125 ID=MsG0580028346.01.T01:exon:46724;Parent=MsG0580028346.01.T01
Chr5 exon 78763069 78763375 78763069 ID=MsG0580028346.01.T01:exon:46723;Parent=MsG0580028346.01.T01
Chr5 five_prime_UTR 78763332 78763375 78763332 ID=MsG0580028346.01.T01:five_prime_utr;Parent=MsG0580028346.01.T01
Chr5 CDS 78763069 78763331 78763069 ID=MsG0580028346.01.T01:cds;Parent=MsG0580028346.01.T01
Chr5 CDS 78761125 78762066 78761125 ID=MsG0580028346.01.T01:cds;Parent=MsG0580028346.01.T01
Chr5 CDS 78759968 78760171 78759968 ID=MsG0580028346.01.T01:cds;Parent=MsG0580028346.01.T01
Chr5 CDS 78758982 78759177 78758982 ID=MsG0580028346.01.T01:cds;Parent=MsG0580028346.01.T01
Chr5 three_prime_UTR 78758610 78758981 78758610 ID=MsG0580028346.01.T01:three_prime_utr;Parent=MsG0580028346.01.T01
Gene Sequence

>MsG0580028346.01.T01

ATGTCTTACACCGATCACGGCGGCGATCGCCGTCACCGTCACCGGAACCACCCCTCTTCAATCTCCGCCGTGTTCCTCTACCTCACTTTCCATTCAATCATCACCCTCGTCGGTGCTTCCATTCACGACTACCAAAACGAAACGTTCATCCGTCGTGCTAATTCGTTTTTCTTTCATGGTGGTAGTGAAGGTCTTTACGCTTCTAAACCTATTGAGTTTAACCATTCTCTGGATAACTTTCCCACTGGTAAATCCTTCATCAGGTTTGAGTCTATCAACTTCCGGAGGACAAAAGAGTCTGCTCAAAAGGCAAGTTCGATGCAACAGAAAACAGGGTTGGTTGAAGCTATAATAATTAAGGTGAGAGATAGGAATAACATTGGGGGTGTTTATTTGAACTCTGATGCTATATGCTGCACACCAGAGCTTGCTAAAGAAGGTTCTTGTAAGTTAGGAGAGGTTATCATCCGTGAGAACCCGGATGAACCGAACGGGCCGAAACGCTTGCAAACGTTTTTTGAAGGACAAAATGAAGAGACTAACATGGTCATTCAAACTGTTGATATTAATAGTACTGGGATGTATTATTTGTATTTCATGTTTTGTGATCCTGAACTGAAGGACACGGTGATTTCTGGAAGAACTGTGTGGAGAAATCCGGATGGTTATCTACCGGGGAAGATGATGCCATTGATGACTTTTTATGGTTTGATGTCTTTGGCTTACCTTTTTCTTGGTCTTGTATGGTTTCTCTGGTTTGTAAAATATTGGAAAGATGTTATACAGTTGCATTACCACATTACTGCTGTTATTGGCCTAGGCATGTGTGAAATGGCTCTGTGGTATTTTGAGTATGCAAATTTCAATTCGACAGGAAGCAGGCCAATGGTAATTACAGTATGGGCCGTGACTTTCACTGCTGTCAAGAAGACAGTGTCACGGCTTCTTCTTTTGGTGGTTTCTATGGGCTATGGAGTTGTCCGTCCAACACTTGGTGGTCTAACCTCAAAAGTCCTTCTTCTTGGTGTGGTGTATTTTGTGGCCTCAGAAGCACTTGAGCTGGTGGAACATCTCGGTAATATTAATGACTTCTCTGGAAAAACAAGGCTTTTCCTGGTGCTGCCTGTGGCTCTGTTGGATGCTTGCTTTATTCTTTGGATCTTTTCATCATTATCTAAAACCCTTGAGAAGCTTCAGGTAACCTATATCTTGATTTTGTGTTTTATGCTAATAACTACAAGTGTCTCAGGCTCTGATTTAATCATGTTTCAGTTGTACTTCAATGCATCAGACCCTTTAGGGGAACTGTGGCGAAGAGCATGGGCCATCCCAGCTTTCTGGACTTTGCTTGCTTATGCTCTCCTGATAGTGATCTGCATTCTCTGGGCCCCATCTCGAAATCCAACCAGGTATTCGTACTCGGAAGAGACGGGAGATGATTTTGATGAGGAAGCTGTCGCAGTTGTTGGAAGTGGAGTTAAGATGTCTGGAGAAATGTCTACCATGCTAGAAAGAAAGGATAGAAAGGCATCGTCTACATCACTTGCTACAGATCATCATGTATTTGGAGTTATTGAAGATCTAGAGGAAGACAAGAGGGAGTGA

Protein sequence

>MsG0580028346.01.T01

MSYTDHGGDRRHRHRNHPSSISAVFLYLTFHSIITLVGASIHDYQNETFIRRANSFFFHGGSEGLYASKPIEFNHSLDNFPTGKSFIRFESINFRRTKESAQKASSMQQKTGLVEAIIIKVRDRNNIGGVYLNSDAICCTPELAKEGSCKLGEVIIRENPDEPNGPKRLQTFFEGQNEETNMVIQTVDINSTGMYYLYFMFCDPELKDTVISGRTVWRNPDGYLPGKMMPLMTFYGLMSLAYLFLGLVWFLWFVKYWKDVIQLHYHITAVIGLGMCEMALWYFEYANFNSTGSRPMVITVWAVTFTAVKKTVSRLLLLVVSMGYGVVRPTLGGLTSKVLLLGVVYFVASEALELVEHLGNINDFSGKTRLFLVLPVALLDACFILWIFSSLSKTLEKLQVTYILILCFMLITTSVSGSDLIMFQLYFNASDPLGELWRRAWAIPAFWTLLAYALLIVICILWAPSRNPTRYSYSEETGDDFDEEAVAVVGSGVKMSGEMSTMLERKDRKASSTSLATDHHVFGVIEDLEEDKRE*