Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480022965.01.T01 | XP_013446579.1 | 72.449 | 98 | 6 | 1 | 18 | 94 | 69 | 166 | 3.69E-19 | 92.8 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480022965.01.T01 | A0A5N6QIU6 | 54.545 | 99 | 23 | 2 | 18 | 94 | 71 | 169 | 1.04e-23 | 104 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048135.01 | MsG0480022965.01 | 0.803671 | 3.119191e-49 | 1.576819e-46 |
| MsG0080048687.01 | MsG0480022965.01 | 0.818136 | 2.294658e-52 | 1.703372e-49 |
| MsG0080048855.01 | MsG0480022965.01 | 0.826582 | 2.507038e-54 | 2.360630e-51 |
| MsG0180000142.01 | MsG0480022965.01 | 0.827013 | 1.977829e-54 | 1.885762e-51 |
| MsG0180000144.01 | MsG0480022965.01 | 0.851090 | 1.112698e-60 | 2.226711e-57 |
| MsG0180000155.01 | MsG0480022965.01 | 0.883993 | 2.802421e-71 | 1.817002e-67 |
| MsG0180000209.01 | MsG0480022965.01 | 0.808163 | 3.545224e-50 | 2.012543e-47 |
| MsG0180000580.01 | MsG0480022965.01 | 0.863394 | 2.569088e-64 | 7.775793e-61 |
| MsG0180000732.01 | MsG0480022965.01 | 0.815664 | 8.233050e-52 | 5.711658e-49 |
| MsG0180000799.01 | MsG0480022965.01 | 0.836288 | 1.021861e-56 | 1.282140e-53 |
| MsG0180000836.01 | MsG0480022965.01 | 0.807280 | 5.460413e-50 | 3.028957e-47 |
| MsG0180000882.01 | MsG0480022965.01 | 0.850278 | 1.883211e-60 | 3.669430e-57 |
| MsG0180001102.01 | MsG0480022965.01 | 0.823477 | 1.356240e-53 | 1.169056e-50 |
| MsG0180001141.01 | MsG0480022965.01 | 0.816271 | 6.025349e-52 | 4.250226e-49 |
| MsG0180001173.01 | MsG0480022965.01 | 0.801063 | 1.074377e-48 | 5.082778e-46 |
| MsG0180001570.01 | MsG0480022965.01 | 0.813796 | 2.135366e-51 | 1.408074e-48 |
| MsG0180001599.01 | MsG0480022965.01 | 0.804367 | 2.235372e-49 | 1.150456e-46 |
| MsG0180002283.01 | MsG0480022965.01 | 0.801433 | 9.026222e-49 | 4.310014e-46 |
| MsG0180002458.01 | MsG0480022965.01 | 0.800871 | 1.176259e-48 | 5.537537e-46 |
| MsG0180003073.01 | MsG0480022965.01 | 0.867514 | 1.294410e-65 | 4.531144e-62 |
| MsG0180003097.01 | MsG0480022965.01 | 0.830665 | 2.583410e-55 | 2.740084e-52 |
| MsG0180003113.01 | MsG0480022965.01 | 0.834337 | 3.176582e-56 | 3.758551e-53 |
| MsG0180003257.01 | MsG0480022965.01 | 0.829447 | 5.121112e-55 | 5.242606e-52 |
| MsG0180003303.01 | MsG0480022965.01 | 0.838356 | 3.019635e-57 | 4.034240e-54 |
| MsG0180003744.01 | MsG0480022965.01 | 0.800907 | 1.156300e-48 | 5.448778e-46 |
| MsG0180003786.01 | MsG0480022965.01 | 0.834959 | 2.217031e-56 | 2.672533e-53 |
| MsG0180003793.01 | MsG0480022965.01 | 0.836524 | 8.898351e-57 | 1.124202e-53 |
| MsG0180003984.01 | MsG0480022965.01 | 0.816068 | 6.689276e-52 | 4.692423e-49 |
| MsG0180004016.01 | MsG0480022965.01 | 0.819619 | 1.056197e-52 | 8.168449e-50 |
| MsG0180004050.01 | MsG0480022965.01 | 0.864949 | 8.411100e-65 | 2.688996e-61 |
| MsG0180004152.01 | MsG0480022965.01 | 0.809318 | 2.008076e-50 | 1.175222e-47 |
| MsG0180004320.01 | MsG0480022965.01 | 0.801761 | 7.730850e-49 | 3.722070e-46 |
| MsG0180004509.01 | MsG0480022965.01 | 0.807889 | 4.053358e-50 | 2.284267e-47 |
| MsG0180004854.01 | MsG0480022965.01 | 0.843520 | 1.332654e-58 | 2.090418e-55 |
| MsG0180004991.01 | MsG0480022965.01 | 0.805290 | 1.433792e-49 | 7.556599e-47 |
| MsG0180005575.01 | MsG0480022965.01 | 0.820295 | 7.397502e-53 | 5.830037e-50 |
| MsG0180005746.01 | MsG0480022965.01 | 0.814590 | 1.426029e-51 | 9.608039e-49 |
| MsG0180006013.01 | MsG0480022965.01 | 0.817500 | 3.192768e-52 | 2.329171e-49 |
| MsG0180006070.01 | MsG0480022965.01 | 0.830972 | 2.173534e-55 | 2.326270e-52 |
| MsG0180006143.01 | MsG0480022965.01 | 0.841633 | 4.221855e-58 | 6.241332e-55 |
| MsG0280006305.01 | MsG0480022965.01 | 0.869284 | 3.475467e-66 | 1.297028e-62 |
| MsG0280006406.01 | MsG0480022965.01 | 0.815811 | 7.635432e-52 | 5.318353e-49 |
| MsG0280006422.01 | MsG0480022965.01 | 0.846380 | 2.252845e-59 | 3.870403e-56 |
| MsG0280006424.01 | MsG0480022965.01 | 0.829103 | 6.206868e-55 | 6.290193e-52 |
| MsG0280011075.01 | MsG0480022965.01 | 0.800338 | 1.510683e-48 | 7.016396e-46 |
| MsG0280011340.01 | MsG0480022965.01 | 0.804059 | 2.590913e-49 | 1.322997e-46 |
| MsG0280011388.01 | MsG0480022965.01 | 0.811898 | 5.561510e-51 | 3.484626e-48 |
| MsG0380011659.01 | MsG0480022965.01 | 0.810446 | 1.148023e-50 | 6.921474e-48 |
| MsG0380012073.01 | MsG0480022965.01 | 0.820741 | 5.843816e-53 | 4.662767e-50 |
| MsG0380012566.01 | MsG0480022965.01 | 0.843222 | 1.599707e-58 | 2.485719e-55 |
| MsG0380013178.01 | MsG0480022965.01 | 0.809572 | 1.770851e-50 | 1.043475e-47 |
| MsG0380014489.01 | MsG0480022965.01 | 0.856455 | 3.179394e-62 | 7.593564e-59 |
| MsG0380014539.01 | MsG0480022965.01 | 0.825646 | 4.184881e-54 | 3.837139e-51 |
| MsG0380014541.01 | MsG0480022965.01 | 0.809786 | 1.593305e-50 | 9.441938e-48 |
| MsG0380014647.01 | MsG0480022965.01 | 0.865186 | 7.089517e-65 | 2.286025e-61 |
| MsG0380014885.01 | MsG0480022965.01 | 0.812059 | 5.127776e-51 | 3.226980e-48 |
| MsG0480018461.01 | MsG0480022965.01 | 0.802867 | 4.575146e-49 | 2.265804e-46 |
| MsG0480018477.01 | MsG0480022965.01 | 0.843394 | 1.439971e-58 | 2.250061e-55 |
| MsG0480018894.01 | MsG0480022965.01 | 0.849106 | 4.000766e-60 | 7.503976e-57 |
| MsG0480019373.01 | MsG0480022965.01 | 0.800029 | 1.745535e-48 | 8.043679e-46 |
| MsG0480021034.01 | MsG0480022965.01 | 0.849433 | 3.243286e-60 | 6.147450e-57 |
| MsG0480021448.01 | MsG0480022965.01 | 0.858045 | 1.078521e-62 | 2.716482e-59 |
| MsG0480021453.01 | MsG0480022965.01 | 0.820426 | 6.902418e-53 | 5.459985e-50 |
| MsG0480021724.01 | MsG0480022965.01 | 0.801685 | 8.013309e-49 | 3.850682e-46 |
| MsG0480021904.01 | MsG0480022965.01 | 0.831133 | 1.983494e-55 | 2.133034e-52 |
| MsG0480022164.01 | MsG0480022965.01 | 0.869204 | 3.687979e-66 | 1.372404e-62 |
| MsG0480022223.01 | MsG0480022965.01 | 0.807513 | 4.871713e-50 | 2.718871e-47 |
| MsG0480022678.01 | MsG0480022965.01 | 0.817376 | 3.404820e-52 | 2.475488e-49 |
| MsG0480022696.01 | MsG0480022965.01 | 0.825932 | 3.578411e-54 | 3.308142e-51 |
| MsG0480022796.01 | MsG0480022965.01 | 0.855333 | 6.767667e-62 | 1.557175e-58 |
| MsG0480022965.01 | MsG0480023447.01 | 0.801852 | 7.404238e-49 | 3.573333e-46 |
| MsG0480022965.01 | MsG0480023500.01 | 0.814876 | 1.232120e-51 | 8.365341e-49 |
| MsG0480022965.01 | MsG0480023744.01 | 0.823126 | 1.638430e-53 | 1.398455e-50 |
| MsG0480022965.01 | MsG0480023895.01 | 0.863670 | 2.108773e-64 | 6.445500e-61 |
| MsG0480022965.01 | MsG0580024165.01 | 0.857222 | 1.890348e-62 | 4.632064e-59 |
| MsG0480022965.01 | MsG0580024339.01 | 0.827503 | 1.509297e-54 | 1.459838e-51 |
| MsG0480022965.01 | MsG0580024353.01 | 0.823732 | 1.182087e-53 | 1.026473e-50 |
| MsG0480022965.01 | MsG0580024390.01 | 0.821705 | 3.502538e-53 | 2.871091e-50 |
| MsG0480022965.01 | MsG0580024961.01 | 0.811129 | 8.168234e-51 | 5.015250e-48 |
| MsG0480022965.01 | MsG0580025409.01 | 0.801321 | 9.513363e-49 | 4.529905e-46 |
| MsG0480022965.01 | MsG0580025421.01 | 0.810325 | 1.219482e-50 | 7.328824e-48 |
| MsG0480022965.01 | MsG0580025756.01 | 0.804762 | 1.849223e-49 | 9.614979e-47 |
| MsG0480022965.01 | MsG0580026157.01 | 0.818651 | 1.753967e-52 | 1.320593e-49 |
| MsG0480022965.01 | MsG0580030080.01 | 0.855405 | 6.448436e-62 | 1.487257e-58 |
| MsG0480022965.01 | MsG0680030320.01 | 0.808384 | 3.179856e-50 | 1.815701e-47 |
| MsG0480022965.01 | MsG0680030351.01 | 0.822072 | 2.881132e-53 | 2.386274e-50 |
| MsG0480022965.01 | MsG0680031507.01 | 0.807925 | 3.983954e-50 | 2.247233e-47 |
| MsG0480022965.01 | MsG0680031628.01 | 0.874876 | 4.791338e-68 | 2.192910e-64 |
| MsG0480022965.01 | MsG0680032430.01 | 0.832227 | 1.066380e-55 | 1.184427e-52 |
| MsG0480022965.01 | MsG0680034061.01 | 0.872174 | 3.895752e-67 | 1.614085e-63 |
| MsG0480022965.01 | MsG0680035306.01 | 0.805825 | 1.107102e-49 | 5.915850e-47 |
| MsG0480022965.01 | MsG0680035346.01 | 0.836816 | 7.497709e-57 | 9.556838e-54 |
| MsG0480022965.01 | MsG0680035574.01 | 0.805517 | 1.284799e-49 | 6.810873e-47 |
| MsG0480022965.01 | MsG0780035979.01 | 0.804856 | 1.767139e-49 | 9.210806e-47 |
| MsG0480022965.01 | MsG0780037240.01 | 0.813930 | 1.994136e-51 | 1.319716e-48 |
| MsG0480022965.01 | MsG0780037755.01 | 0.801429 | 9.041248e-49 | 4.316779e-46 |
| MsG0480022965.01 | MsG0780038400.01 | 0.852749 | 3.763769e-61 | 7.943922e-58 |
| MsG0480022965.01 | MsG0780038565.01 | 0.817002 | 4.133271e-52 | 2.974502e-49 |
| MsG0480022965.01 | MsG0780038603.01 | 0.808021 | 3.800260e-50 | 2.149159e-47 |
| MsG0480022965.01 | MsG0780039845.01 | 0.815541 | 8.768160e-52 | 6.062492e-49 |
| MsG0480022965.01 | MsG0780040057.01 | 0.814697 | 1.349851e-51 | 9.121010e-49 |
| MsG0480022965.01 | MsG0780040162.01 | 0.816594 | 5.102156e-52 | 3.630750e-49 |
| MsG0480022965.01 | MsG0780040312.01 | 0.802844 | 4.626127e-49 | 2.289798e-46 |
| MsG0480022965.01 | MsG0780040338.01 | 0.826813 | 2.207233e-54 | 2.092342e-51 |
| MsG0480022965.01 | MsG0780040445.01 | 0.862895 | 3.665024e-64 | 1.090643e-60 |
| MsG0480022965.01 | MsG0780040845.01 | 0.845722 | 3.401999e-59 | 5.722064e-56 |
| MsG0480022965.01 | MsG0780040861.01 | 0.816866 | 4.433535e-52 | 3.178635e-49 |
| MsG0480022965.01 | MsG0780041222.01 | 0.815171 | 1.059861e-51 | 7.253418e-49 |
| MsG0480022965.01 | MsG0780041223.01 | 0.818323 | 2.081568e-52 | 1.553173e-49 |
| MsG0480022965.01 | MsG0780041268.01 | 0.834288 | 3.269195e-56 | 3.862370e-53 |
| MsG0480022965.01 | MsG0780041295.01 | 0.858804 | 6.404218e-63 | 1.654826e-59 |
| MsG0480022965.01 | MsG0780041423.01 | 0.839159 | 1.871644e-57 | 2.562518e-54 |
| MsG0480022965.01 | MsG0780041462.01 | 0.815914 | 7.241580e-52 | 5.058019e-49 |
| MsG0480022965.01 | MsG0780041559.01 | 0.901637 | 2.189715e-78 | 2.985976e-74 |
| MsG0480022965.01 | MsG0780041796.01 | 0.831815 | 1.347954e-55 | 1.479391e-52 |
| MsG0480022965.01 | MsG0880042552.01 | 0.806729 | 7.141772e-50 | 3.905337e-47 |
| MsG0480022965.01 | MsG0880042581.01 | 0.807920 | 3.992394e-50 | 2.251772e-47 |
| MsG0480022965.01 | MsG0880042604.01 | 0.813158 | 2.948399e-51 | 1.910698e-48 |
| MsG0480022965.01 | MsG0880042779.01 | 0.838837 | 2.267516e-57 | 3.074266e-54 |
| MsG0480022965.01 | MsG0880043465.01 | 0.803772 | 2.971607e-49 | 1.506181e-46 |
| MsG0480022965.01 | MsG0880043592.01 | 0.825013 | 5.907593e-54 | 5.320341e-51 |
| MsG0480022965.01 | MsG0880044360.01 | -0.816567 | 5.173928e-52 | 3.679089e-49 |
| MsG0480022965.01 | MsG0880045145.01 | 0.848933 | 4.468855e-60 | 8.334227e-57 |
| MsG0480022965.01 | MsG0880045631.01 | 0.855830 | 4.848713e-62 | 1.134101e-58 |
| MsG0480022965.01 | MsG0880045653.01 | 0.805258 | 1.456173e-49 | 7.667986e-47 |
| MsG0480022965.01 | MsG0880045656.01 | 0.810133 | 1.341062e-50 | 8.019311e-48 |
| MsG0480022965.01 | MsG0880045965.01 | 0.800107 | 1.682887e-48 | 7.770375e-46 |
| MsG0480022965.01 | MsG0880046177.01 | 0.829141 | 6.077317e-55 | 6.165777e-52 |
| MsG0480022965.01 | MsG0880046321.01 | 0.805934 | 1.050222e-49 | 5.627654e-47 |
| MsG0480022965.01 | MsG0880046328.01 | 0.820793 | 5.686272e-53 | 4.543747e-50 |
| MsG0480022965.01 | MsG0880046933.01 | 0.833591 | 4.885343e-56 | 5.651743e-53 |
| MsG0480022965.01 | MsG0880047016.01 | 0.814548 | 1.456832e-51 | 9.804505e-49 |
| MsG0480022965.01 | MsG0880047038.01 | 0.886811 | 2.470311e-72 | 1.791115e-68 |
| MsG0480022965.01 | MsG0880047427.01 | 0.806580 | 7.676084e-50 | 4.181501e-47 |
| MsG0480022965.01 | MsG0880047428.01 | 0.843835 | 1.097618e-58 | 1.738869e-55 |
| MsG0480022965.01 | MsG0880047448.01 | 0.828905 | 6.932421e-55 | 6.984205e-52 |
| MsG0480022965.01 | MsG0880047607.01 | 0.871477 | 6.633696e-67 | 2.680047e-63 |
| MsG0380015027.01 | MsG0480022965.01 | 0.815371 | 9.569316e-52 | 6.585418e-49 |
| MsG0380015770.01 | MsG0480022965.01 | 0.800082 | 1.702849e-48 | 7.857633e-46 |
| MsG0380015793.01 | MsG0480022965.01 | -0.805758 | 1.143434e-49 | 6.099759e-47 |
| MsG0380015831.01 | MsG0480022965.01 | 0.862310 | 5.547990e-64 | 1.617461e-60 |
| MsG0380016513.01 | MsG0480022965.01 | 0.831303 | 1.802165e-55 | 1.947737e-52 |
| MsG0380016860.01 | MsG0480022965.01 | 0.839096 | 1.944051e-57 | 2.656665e-54 |
| MsG0380016970.01 | MsG0480022965.01 | 0.815926 | 7.196985e-52 | 5.028570e-49 |
| MsG0480018163.01 | MsG0480022965.01 | 0.802014 | 6.858499e-49 | 3.323511e-46 |
| MsG0480018289.01 | MsG0480022965.01 | 0.851420 | 8.978711e-61 | 1.816470e-57 |
| MsG0280006712.01 | MsG0480022965.01 | 0.814263 | 1.684210e-51 | 1.124739e-48 |
| MsG0280006993.01 | MsG0480022965.01 | 0.806093 | 9.726370e-50 | 5.232940e-47 |
| MsG0280007161.01 | MsG0480022965.01 | 0.829504 | 4.959718e-55 | 5.085822e-52 |
| MsG0280007222.01 | MsG0480022965.01 | 0.859352 | 4.388692e-63 | 1.155798e-59 |
| MsG0280008037.01 | MsG0480022965.01 | 0.853376 | 2.489384e-61 | 5.367671e-58 |
| MsG0280008134.01 | MsG0480022965.01 | 0.804844 | 1.777288e-49 | 9.260872e-47 |
| MsG0280008286.01 | MsG0480022965.01 | 0.815073 | 1.114098e-51 | 7.604554e-49 |
| MsG0280008696.01 | MsG0480022965.01 | 0.818195 | 2.224983e-52 | 1.654340e-49 |
| MsG0280008885.01 | MsG0480022965.01 | 0.819713 | 1.005025e-52 | 7.793688e-50 |
| MsG0280009111.01 | MsG0480022965.01 | 0.815109 | 1.093972e-51 | 7.474349e-49 |
| MsG0280009230.01 | MsG0480022965.01 | 0.829498 | 4.977717e-55 | 5.103317e-52 |
| MsG0280009739.01 | MsG0480022965.01 | 0.841748 | 3.936434e-58 | 5.839728e-55 |
| MsG0280010002.01 | MsG0480022965.01 | 0.805044 | 1.613966e-49 | 8.452783e-47 |
| MsG0280010287.01 | MsG0480022965.01 | 0.837230 | 5.874489e-57 | 7.581746e-54 |
| MsG0280010533.01 | MsG0480022965.01 | 0.812043 | 5.170101e-51 | 3.252080e-48 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480022965.01.T01 | MTR_8g080700 | 72.449 | 98 | 6 | 1 | 18 | 94 | 69 | 166 | 4.47e-23 | 92.8 |
| MsG0480022965.01.T01 | MTR_5g024090 | 55.102 | 98 | 22 | 2 | 18 | 94 | 64 | 160 | 3.94e-17 | 76.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 39 sgRNAs with CRISPR-Local
Find 125 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGCCCAAGATGCACATATA+TGG | 0.270395 | 4:+79240966 | None:intergenic |
| TGCCGGTGGTCCTACTTTGC+AGG | 0.336608 | 4:-79241144 | MsG0480022965.01.T01:intron |
| ACACACAGTGTATTCATTAC+AGG | 0.343724 | 4:-79241705 | MsG0480022965.01.T01:CDS |
| GAGTCATCAGTTTCACGTTT+AGG | 0.409980 | 4:+79241227 | None:intergenic |
| TGCCCAAGATGCACATATAT+GGG | 0.425064 | 4:+79240967 | None:intergenic |
| TGAAACTGATGACTCTGAAA+TGG | 0.427597 | 4:-79241219 | MsG0480022965.01.T01:CDS |
| TGTGCATCTTGGGCAGAATC+TGG | 0.430129 | 4:-79240959 | MsG0480022965.01.T01:CDS |
| TCCCCATATATGTGCATCTT+GGG | 0.431645 | 4:-79240969 | MsG0480022965.01.T01:CDS |
| ATCCCCATATATGTGCATCT+TGG | 0.460743 | 4:-79240970 | MsG0480022965.01.T01:CDS |
| ACTCACGAAGGTTGTATTAA+CGG | 0.491723 | 4:-79241012 | MsG0480022965.01.T01:CDS |
| ACCTGTGAGTGGCTTGTTGT+TGG | 0.504353 | 4:+79242771 | None:intergenic |
| GGCAGAATCTGGTCATGTGC+AGG | 0.520350 | 4:-79240948 | MsG0480022965.01.T01:CDS |
| TTCTGGGAAGAGACGTGAGC+TGG | 0.529788 | 4:-79241252 | MsG0480022965.01.T01:intron |
| GACGAAGAAGAAGGTGGTGC+CGG | 0.530693 | 4:-79241161 | MsG0480022965.01.T01:CDS |
| GATAGTGAAGACGAAGAAGA+AGG | 0.533242 | 4:-79241170 | MsG0480022965.01.T01:CDS |
| GCGGCATAAACATCGTCAAA+AGG | 0.536460 | 4:-79242603 | MsG0480022965.01.T01:CDS |
| GGGTGAGGATAGTGATAGCG+AGG | 0.546283 | 4:-79241195 | MsG0480022965.01.T01:CDS |
| TTGGCTAAGGACCAGTCATA+GGG | 0.547991 | 4:+79240912 | None:intergenic |
| CACACAGTGTATTCATTACA+GGG | 0.561130 | 4:-79241704 | MsG0480022965.01.T01:CDS |
| AGGGTGTGTACCTGCAAAGT+AGG | 0.563481 | 4:+79241134 | None:intergenic |
| ACCAACAACAAGCCACTCAC+AGG | 0.580280 | 4:-79242772 | MsG0480022965.01.T01:intron |
| TGACTCTGAAATGGAGGGTG+AGG | 0.583378 | 4:-79241210 | MsG0480022965.01.T01:CDS |
| AACTGATGACTCTGAAATGG+AGG | 0.585495 | 4:-79241216 | MsG0480022965.01.T01:CDS |
| GACGGAGAAGAGAGAGAACT+AGG | 0.586818 | 4:+79242795 | None:intergenic |
| TACCTGCAAAGTAGGACCAC+CGG | 0.587108 | 4:+79241142 | None:intergenic |
| TTCTGTTCGAACTAAACCCA+TGG | 0.588801 | 4:+79241733 | None:intergenic |
| GAGTGGCTTGTTGTTGGTGA+CGG | 0.602232 | 4:+79242777 | None:intergenic |
| TGTATTCATTACAGGGACAC+AGG | 0.611896 | 4:-79241697 | MsG0480022965.01.T01:intron |
| GAAGAAGAAGGTGGTGCCGG+TGG | 0.612395 | 4:-79241158 | MsG0480022965.01.T01:CDS |
| GTATTAACGGATACGCTCCA+TGG | 0.618333 | 4:-79240999 | MsG0480022965.01.T01:CDS |
| ACCTTTGACAAACCTGTGAG+TGG | 0.623381 | 4:+79242760 | None:intergenic |
| AAAGGCAAAGAGCAAGAACA+AGG | 0.634436 | 4:-79242585 | MsG0480022965.01.T01:intron |
| TGTAATGAATACACTGTGTG+TGG | 0.635134 | 4:+79241707 | None:intergenic |
| CACACACCTACAGTTGCGGA+AGG | 0.652479 | 4:-79241037 | MsG0480022965.01.T01:intron |
| GCCCAAGATGCACATATATG+GGG | 0.653392 | 4:+79240968 | None:intergenic |
| ACTGATGACTCTGAAATGGA+GGG | 0.667667 | 4:-79241215 | MsG0480022965.01.T01:CDS |
| AGTGAAGACGAAGAAGAAGG+TGG | 0.675905 | 4:-79241167 | MsG0480022965.01.T01:CDS |
| GAACTAATGAAGATGACTCG+CGG | 0.711121 | 4:-79242622 | MsG0480022965.01.T01:exon |
| TTGCGGAAGGTAACTCACGA+AGG | 0.747550 | 4:-79241024 | MsG0480022965.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAGTAAAATTCATATGA+AGG | + | Chr4:79242612-79242631 | None:intergenic | 15.0% |
| !! | AAAAGTAAAATTCATATGAA+GGG | + | Chr4:79242611-79242630 | None:intergenic | 15.0% |
| !!! | TCATGATTTATTTTTTGTTT+GGG | - | Chr4:79241936-79241955 | MsG0480022965.01.T01:intron | 15.0% |
| !!! | TTTTGAAAAAAATGAAGAAA+CGG | - | Chr4:79241251-79241270 | MsG0480022965.01.T01:intron | 15.0% |
| !! | TGATAAATTTCTGATTCATT+TGG | - | Chr4:79241055-79241074 | MsG0480022965.01.T01:intron | 20.0% |
| !!! | CATGATTTATTTTTTGTTTG+GGG | - | Chr4:79241937-79241956 | MsG0480022965.01.T01:intron | 20.0% |
| !!! | GTCATGATTTATTTTTTGTT+TGG | - | Chr4:79241935-79241954 | MsG0480022965.01.T01:intron | 20.0% |
| !!! | TAGAATTTTTTGTCCTTTAA+TGG | - | Chr4:79242181-79242200 | MsG0480022965.01.T01:intron | 20.0% |
| !!! | TTAAAGTATCCAATATTTCT+GGG | - | Chr4:79242455-79242474 | MsG0480022965.01.T01:intron | 20.0% |
| !!! | TTTAAAGTATCCAATATTTC+TGG | - | Chr4:79242454-79242473 | MsG0480022965.01.T01:intron | 20.0% |
| ! | AAAACTCAAAAGTCCATTAA+AGG | + | Chr4:79242197-79242216 | None:intergenic | 25.0% |
| ! | AAATCTTCTTGGAATTCTAT+GGG | - | Chr4:79242428-79242447 | MsG0480022965.01.T01:intron | 25.0% |
| ! | AAGAATTATGACATTGTGAT+TGG | - | Chr4:79241737-79241756 | MsG0480022965.01.T01:CDS | 25.0% |
| ! | ATAATTCAATGTAGTCACTT+GGG | - | Chr4:79241630-79241649 | MsG0480022965.01.T01:intron | 25.0% |
| !! | TCTTGTGTGTTTTCTTTTAT+AGG | - | Chr4:79242064-79242083 | MsG0480022965.01.T01:intron | 25.0% |
| !!! | ATTCTGCTTTTTATTTTCTG+TGG | - | Chr4:79241207-79241226 | MsG0480022965.01.T01:CDS | 25.0% |
| !!! | TAAATAAAACCCATTTTTGC+TGG | - | Chr4:79241465-79241484 | MsG0480022965.01.T01:intron | 25.0% |
| !!! | TTCTGCTTTTTATTTTCTGT+GGG | - | Chr4:79241208-79241227 | MsG0480022965.01.T01:CDS | 25.0% |
| AAAGCTAGTAAAACATGACT+AGG | + | Chr4:79242342-79242361 | None:intergenic | 30.0% | |
| AATAAAGTGCGAGATCAAAA+GGG | + | Chr4:79241190-79241209 | None:intergenic | 30.0% | |
| CATAATTCAATGTAGTCACT+TGG | - | Chr4:79241629-79241648 | MsG0480022965.01.T01:intron | 30.0% | |
| GAAATCTTCTTGGAATTCTA+TGG | - | Chr4:79242427-79242446 | MsG0480022965.01.T01:intron | 30.0% | |
| TGTCATAATTCTTGTGAAAG+AGG | + | Chr4:79241730-79241749 | None:intergenic | 30.0% | |
| ! | AGTTGATCTTACTGACATTT+TGG | - | Chr4:79242659-79242678 | MsG0480022965.01.T01:intron | 30.0% |
| ! | TGACATAGAATTGGTAACAT+TGG | + | Chr4:79241763-79241782 | None:intergenic | 30.0% |
| AAAGCAAACGCACAAAAATG+TGG | + | Chr4:79241884-79241903 | None:intergenic | 35.0% | |
| ACACACAGTGTATTCATTAC+AGG | - | Chr4:79242018-79242037 | MsG0480022965.01.T01:intron | 35.0% | |
| ACATGCACATATTATCAACG+AGG | + | Chr4:79242395-79242414 | None:intergenic | 35.0% | |
| ACTCACGAAGGTTGTATTAA+CGG | - | Chr4:79242711-79242730 | MsG0480022965.01.T01:intron | 35.0% | |
| ACTGTTCATTACCGATCAAA+TGG | - | Chr4:79242116-79242135 | MsG0480022965.01.T01:intron | 35.0% | |
| AGTGATAACTCCAGCAAAAA+TGG | + | Chr4:79241478-79241497 | None:intergenic | 35.0% | |
| CACACAGTGTATTCATTACA+GGG | - | Chr4:79242019-79242038 | MsG0480022965.01.T01:intron | 35.0% | |
| CTGTTCATTACCGATCAAAT+GGG | - | Chr4:79242117-79242136 | MsG0480022965.01.T01:intron | 35.0% | |
| CTTTGTTCTTTACCTAAGAC+AGG | + | Chr4:79241417-79241436 | None:intergenic | 35.0% | |
| GAATAAAGTGCGAGATCAAA+AGG | + | Chr4:79241191-79241210 | None:intergenic | 35.0% | |
| GTGATAACTCCAGCAAAAAT+GGG | + | Chr4:79241477-79241496 | None:intergenic | 35.0% | |
| TCATAGCTCTTGAATTGCAA+TGG | + | Chr4:79241551-79241570 | None:intergenic | 35.0% | |
| TGTAATGAATACACTGTGTG+TGG | + | Chr4:79242019-79242038 | None:intergenic | 35.0% | |
| TGTCTCATGAATCATCTTGA+AGG | - | Chr4:79242088-79242107 | MsG0480022965.01.T01:intron | 35.0% | |
| TGTTCATTACCGATCAAATG+GGG | - | Chr4:79242118-79242137 | MsG0480022965.01.T01:intron | 35.0% | |
| ! | ACACCTTCAATCAAAAGTGT+CGG | - | Chr4:79241830-79241849 | MsG0480022965.01.T01:intron | 35.0% |
| ! | ATTGGTGACATTGGTAACAT+TGG | - | Chr4:79241673-79241692 | MsG0480022965.01.T01:intron | 35.0% |
| ! | GATATTTTACGTGACACCAT+GGG | - | Chr4:79241974-79241993 | MsG0480022965.01.T01:intron | 35.0% |
| ! | TCCATGCTTTTCATATTGGA+TGG | - | Chr4:79241391-79241410 | MsG0480022965.01.T01:intron | 35.0% |
| ! | TCTCTCCATGCTTTTCATAT+TGG | - | Chr4:79241387-79241406 | MsG0480022965.01.T01:intron | 35.0% |
| ! | TGAAACTGATGACTCTGAAA+TGG | - | Chr4:79242504-79242523 | MsG0480022965.01.T01:intron | 35.0% |
| ! | TGACATAGAATTGGTGACAT+TGG | - | Chr4:79241664-79241683 | MsG0480022965.01.T01:intron | 35.0% |
| !! | ATACCGACACTTTTGATTGA+AGG | + | Chr4:79241836-79241855 | None:intergenic | 35.0% |
| AAAGGCAAAGAGCAAGAACA+AGG | - | Chr4:79241138-79241157 | MsG0480022965.01.T01:intron | 40.0% | |
| ACGTCTCTTCCCAGAAATAT+TGG | + | Chr4:79242467-79242486 | None:intergenic | 40.0% | |
| ATCCCCATATATGTGCATCT+TGG | - | Chr4:79242753-79242772 | MsG0480022965.01.T01:intron | 40.0% | |
| GAAACGGAGTGAATCATCTT+CGG | - | Chr4:79241267-79241286 | MsG0480022965.01.T01:intron | 40.0% | |
| GAACTAATGAAGATGACTCG+CGG | - | Chr4:79241101-79241120 | MsG0480022965.01.T01:intron | 40.0% | |
| GAGTCATCAGTTTCACGTTT+AGG | + | Chr4:79242499-79242518 | None:intergenic | 40.0% | |
| GATAGTGAAGACGAAGAAGA+AGG | - | Chr4:79242553-79242572 | MsG0480022965.01.T01:intron | 40.0% | |
| GCACTTGAGTGACATAGAAT+TGG | + | Chr4:79241772-79241791 | None:intergenic | 40.0% | |
| GCCATCCAATATGAAAAGCA+TGG | + | Chr4:79241395-79241414 | None:intergenic | 40.0% | |
| TCAACTTCAACACAGTCAAG+AGG | + | Chr4:79242645-79242664 | None:intergenic | 40.0% | |
| TCCCCATATATGTGCATCTT+GGG | - | Chr4:79242754-79242773 | MsG0480022965.01.T01:intron | 40.0% | |
| TGCCCAAGATGCACATATAT+GGG | + | Chr4:79242759-79242778 | None:intergenic | 40.0% | |
| TGGAGAGAATTGTAAGCAGA+AGG | + | Chr4:79241375-79241394 | None:intergenic | 40.0% | |
| TGTATTCATTACAGGGACAC+AGG | - | Chr4:79242026-79242045 | MsG0480022965.01.T01:intron | 40.0% | |
| TTACCGATCAAATGGGGTAA+CGG | - | Chr4:79242124-79242143 | MsG0480022965.01.T01:intron | 40.0% | |
| TTCTGTTCGAACTAAACCCA+TGG | + | Chr4:79241993-79242012 | None:intergenic | 40.0% | |
| TTTCCGTTACCCCATTTGAT+CGG | + | Chr4:79242130-79242149 | None:intergenic | 40.0% | |
| ! | CGATATTTTACGTGACACCA+TGG | - | Chr4:79241973-79241992 | MsG0480022965.01.T01:intron | 40.0% |
| ! | GTCGGTATTTAGAGTTCAAG+AGG | - | Chr4:79241848-79241867 | MsG0480022965.01.T01:intron | 40.0% |
| ! | TATATGGGGATTTTGTGCCA+TGG | + | Chr4:79242744-79242763 | None:intergenic | 40.0% |
| !! | AACTGATGACTCTGAAATGG+AGG | - | Chr4:79242507-79242526 | MsG0480022965.01.T01:intron | 40.0% |
| !! | ACTGATGACTCTGAAATGGA+GGG | - | Chr4:79242508-79242527 | MsG0480022965.01.T01:intron | 40.0% |
| !! | GGGTAACGGAAAGTTGATAT+TGG | - | Chr4:79242138-79242157 | MsG0480022965.01.T01:intron | 40.0% |
| ACCTTTGACAAACCTGTGAG+TGG | + | Chr4:79240966-79240985 | None:intergenic | 45.0% | |
| AGTGAAGACGAAGAAGAAGG+TGG | - | Chr4:79242556-79242575 | MsG0480022965.01.T01:intron | 45.0% | |
| ATAATATGTGCATGTGCCCC+AGG | - | Chr4:79242400-79242419 | MsG0480022965.01.T01:intron | 45.0% | |
| CAAGAAGATTTCTCAGCCTG+GGG | + | Chr4:79242419-79242438 | None:intergenic | 45.0% | |
| CACTAGCAGATAGCATCACA+AGG | + | Chr4:79242256-79242275 | None:intergenic | 45.0% | |
| CATATTGGATGGCCTGTCTT+AGG | - | Chr4:79241402-79241421 | MsG0480022965.01.T01:intron | 45.0% | |
| CCAAGAAGATTTCTCAGCCT+GGG | + | Chr4:79242420-79242439 | None:intergenic | 45.0% | |
| CTGCCCAAGATGCACATATA+TGG | + | Chr4:79242760-79242779 | None:intergenic | 45.0% | |
| GCACTTGGGTGACATAGAAT+TGG | - | Chr4:79241655-79241674 | MsG0480022965.01.T01:intron | 45.0% | |
| GCCCAAGATGCACATATATG+GGG | + | Chr4:79242758-79242777 | None:intergenic | 45.0% | |
| GCGGCATAAACATCGTCAAA+AGG | - | Chr4:79241120-79241139 | MsG0480022965.01.T01:intron | 45.0% | |
| TACACCGACACAAGTGACTA+CGG | + | Chr4:79241798-79241817 | None:intergenic | 45.0% | |
| TAGTCACTTGGGTAGCACTT+GGG | - | Chr4:79241641-79241660 | MsG0480022965.01.T01:intron | 45.0% | |
| TCCAAGAAGATTTCTCAGCC+TGG | + | Chr4:79242421-79242440 | None:intergenic | 45.0% | |
| TTCTCACACACCTACAGTTG+CGG | - | Chr4:79242682-79242701 | MsG0480022965.01.T01:intron | 45.0% | |
| ! | GTATTAACGGATACGCTCCA+TGG | - | Chr4:79242724-79242743 | MsG0480022965.01.T01:intron | 45.0% |
| ACACCGACACAAGTGACTAC+GGG | + | Chr4:79241797-79241816 | None:intergenic | 50.0% | |
| ACCAACAACAAGCCACTCAC+AGG | - | Chr4:79240951-79240970 | MsG0480022965.01.T01:CDS | 50.0% | |
| ACGGAGTGAATCATCTTCGG+CGG | - | Chr4:79241270-79241289 | MsG0480022965.01.T01:intron | 50.0% | |
| AGGGTGTGTACCTGCAAAGT+AGG | + | Chr4:79242592-79242611 | None:intergenic | 50.0% | |
| CCACAGTTCCGGTAAAAGTG+TGG | - | Chr4:79241301-79241320 | MsG0480022965.01.T01:intron | 50.0% | |
| CCCAGGCTGAGAAATCTTCT+TGG | - | Chr4:79242417-79242436 | MsG0480022965.01.T01:intron | 50.0% | |
| CTACCCGTAGTCACTTGTGT+CGG | - | Chr4:79241791-79241810 | MsG0480022965.01.T01:intron | 50.0% | |
| GACGGAGAAGAGAGAGAACT+AGG | + | Chr4:79240931-79240950 | None:intergenic | 50.0% | |
| GAGTTACCTTCCGCAACTGT+AGG | + | Chr4:79242695-79242714 | None:intergenic | 50.0% | |
| GCCACTCACAGGTTTGTCAA+AGG | - | Chr4:79240962-79240981 | MsG0480022965.01.T01:CDS | 50.0% | |
| GCCGATCACAATGTCACAAG+CGG | - | Chr4:79241695-79241714 | MsG0480022965.01.T01:intron | 50.0% | |
| GCCGCTTGTGACATTGTGAT+CGG | + | Chr4:79241699-79241718 | None:intergenic | 50.0% | |
| GTAGTCACTTGGGTAGCACT+TGG | - | Chr4:79241640-79241659 | MsG0480022965.01.T01:intron | 50.0% | |
| TACCTGCAAAGTAGGACCAC+CGG | + | Chr4:79242584-79242603 | None:intergenic | 50.0% | |
| TCTTCCAACTTATCCACCCC+AGG | + | Chr4:79241330-79241349 | None:intergenic | 50.0% | |
| TGTGCATCTTGGGCAGAATC+TGG | - | Chr4:79242764-79242783 | MsG0480022965.01.T01:intron | 50.0% | |
| TTGCGGAAGGTAACTCACGA+AGG | - | Chr4:79242699-79242718 | MsG0480022965.01.T01:intron | 50.0% | |
| ! | CCACACTTTTACCGGAACTG+TGG | + | Chr4:79241304-79241323 | None:intergenic | 50.0% |
| ! | CCAGGTTGCCACACTTTTAC+CGG | + | Chr4:79241312-79241331 | None:intergenic | 50.0% |
| ! | CGGTAAAAGTGTGGCAACCT+GGG | - | Chr4:79241310-79241329 | MsG0480022965.01.T01:intron | 50.0% |
| ! | CTTGTGTCGGTGTAGTACAC+TGG | - | Chr4:79241804-79241823 | MsG0480022965.01.T01:intron | 50.0% |
| ! | GGTAAAAGTGTGGCAACCTG+GGG | - | Chr4:79241311-79241330 | MsG0480022965.01.T01:intron | 50.0% |
| !! | ACCTGTGAGTGGCTTGTTGT+TGG | + | Chr4:79240955-79240974 | None:intergenic | 50.0% |
| !! | GAGTGGCTTGTTGTTGGTGA+CGG | + | Chr4:79240949-79240968 | None:intergenic | 50.0% |
| !! | TGACTCTGAAATGGAGGGTG+AGG | - | Chr4:79242513-79242532 | MsG0480022965.01.T01:intron | 50.0% |
| CACACACCTACAGTTGCGGA+AGG | - | Chr4:79242686-79242705 | MsG0480022965.01.T01:intron | 55.0% | |
| GACGAAGAAGAAGGTGGTGC+CGG | - | Chr4:79242562-79242581 | MsG0480022965.01.T01:intron | 55.0% | |
| GAGTGAATCATCTTCGGCGG+CGG | - | Chr4:79241273-79241292 | MsG0480022965.01.T01:intron | 55.0% | |
| GCAACCTGGGGTGGATAAGT+TGG | - | Chr4:79241323-79241342 | MsG0480022965.01.T01:intron | 55.0% | |
| GGCAGAATCTGGTCATGTGC+AGG | - | Chr4:79242775-79242794 | MsG0480022965.01.T01:five_prime_UTR | 55.0% | |
| ! | AAAAGTGTGGCAACCTGGGG+TGG | - | Chr4:79241314-79241333 | MsG0480022965.01.T01:intron | 55.0% |
| ! | CCGGTAAAAGTGTGGCAACC+TGG | - | Chr4:79241309-79241328 | MsG0480022965.01.T01:intron | 55.0% |
| ! | GGGTGAGGATAGTGATAGCG+AGG | - | Chr4:79242528-79242547 | MsG0480022965.01.T01:intron | 55.0% |
| ! | TTCTGGGAAGAGACGTGAGC+TGG | - | Chr4:79242471-79242490 | MsG0480022965.01.T01:intron | 55.0% |
| TGAATCATCTTCGGCGGCGG+CGG | - | Chr4:79241276-79241295 | MsG0480022965.01.T01:intron | 60.0% | |
| TGCCGGTGGTCCTACTTTGC+AGG | - | Chr4:79242579-79242598 | MsG0480022965.01.T01:intron | 60.0% | |
| ! | GAAGAAGAAGGTGGTGCCGG+TGG | - | Chr4:79242565-79242584 | MsG0480022965.01.T01:intron | 60.0% |
| ! | CGGCGGCGGCGCCACAGTTC+CGG | - | Chr4:79241290-79241309 | MsG0480022965.01.T01:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr4 | gene | 79240927 | 79242818 | 79240927 | ID=MsG0480022965.01;Name=MsG0480022965.01 |
| Chr4 | mRNA | 79240927 | 79242818 | 79240927 | ID=MsG0480022965.01.T01;Parent=MsG0480022965.01;Name=MsG0480022965.01.T01;_AED=0.49;_eAED=0.50;_QI=57|0.5|0.6|1|0.25|0.2|5|0|122 |
| Chr4 | exon | 79240927 | 79241046 | 79240927 | ID=MsG0480022965.01.T01:exon:11692;Parent=MsG0480022965.01.T01 |
| Chr4 | exon | 79241145 | 79241262 | 79241145 | ID=MsG0480022965.01.T01:exon:11691;Parent=MsG0480022965.01.T01 |
| Chr4 | exon | 79241698 | 79241775 | 79241698 | ID=MsG0480022965.01.T01:exon:11690;Parent=MsG0480022965.01.T01 |
| Chr4 | exon | 79242586 | 79242649 | 79242586 | ID=MsG0480022965.01.T01:exon:11689;Parent=MsG0480022965.01.T01 |
| Chr4 | exon | 79242773 | 79242818 | 79242773 | ID=MsG0480022965.01.T01:exon:11688;Parent=MsG0480022965.01.T01 |
| Chr4 | five_prime_UTR | 79242773 | 79242818 | 79242773 | ID=MsG0480022965.01.T01:five_prime_utr;Parent=MsG0480022965.01.T01 |
| Chr4 | five_prime_UTR | 79242639 | 79242649 | 79242639 | ID=MsG0480022965.01.T01:five_prime_utr;Parent=MsG0480022965.01.T01 |
| Chr4 | CDS | 79242586 | 79242638 | 79242586 | ID=MsG0480022965.01.T01:cds;Parent=MsG0480022965.01.T01 |
| Chr4 | CDS | 79241698 | 79241775 | 79241698 | ID=MsG0480022965.01.T01:cds;Parent=MsG0480022965.01.T01 |
| Chr4 | CDS | 79241145 | 79241262 | 79241145 | ID=MsG0480022965.01.T01:cds;Parent=MsG0480022965.01.T01 |
| Chr4 | CDS | 79240927 | 79241046 | 79240927 | ID=MsG0480022965.01.T01:cds;Parent=MsG0480022965.01.T01 |
| Gene Sequence |
| Protein sequence |
