AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480023429.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023429.01.T01 MTR_8g092840 95.595 227 9 1 1 226 1 227 8.85e-148 410
MsG0480023429.01.T01 MTR_8g092960 84.000 225 25 3 1 224 1 215 1.98e-127 359
MsG0480023429.01.T01 MTR_8g093010 79.736 227 36 3 1 225 1 219 1.18e-126 357
MsG0480023429.01.T01 MTR_8g092970 79.646 226 36 2 1 225 1 217 3.59e-122 345
MsG0480023429.01.T01 MTR_8g092930 78.761 226 46 2 1 225 1 225 4.63e-119 338
MsG0480023429.01.T01 MTR_8g092990 78.070 228 48 2 1 226 1 228 8.42e-109 312
MsG0480023429.01.T01 MTR_8g092985 77.465 213 43 3 1 211 1 210 1.15e-106 306
MsG0480023429.01.T01 MTR_3g095560 62.338 231 77 3 1 225 1 227 6.51e-98 285
MsG0480023429.01.T01 MTR_7g073200 49.315 146 66 3 42 186 15 153 9.30e-44 145
MsG0480023429.01.T01 MTR_3g094000 54.412 136 56 2 53 187 36 166 1.14e-43 145
MsG0480023429.01.T01 MTR_3g116000 47.260 146 64 4 58 198 26 163 5.09e-36 126
MsG0480023429.01.T01 MTR_5g024730 47.445 137 62 3 57 191 29 157 7.94e-36 126
MsG0480023429.01.T01 MTR_8g073120 49.231 130 51 5 57 182 22 140 5.29e-34 121
MsG0480023429.01.T01 MTR_2g035800 38.961 154 82 3 30 183 4 145 7.44e-33 117
MsG0480023429.01.T01 MTR_4g094725 39.474 152 78 4 33 183 11 149 3.88e-30 109
MsG0480023429.01.T01 MTR_1g043410 28.931 159 96 4 34 183 16 166 9.92e-22 91.7
MsG0480023429.01.T01 MTR_7g113800 33.553 152 79 5 44 186 28 166 1.43e-20 89.0
MsG0480023429.01.T01 MTR_1g100737 44.898 98 50 1 96 189 75 172 1.71e-20 85.9
MsG0480023429.01.T01 MTR_1g082550 32.886 149 89 5 42 186 32 173 2.38e-19 85.9
MsG0480023429.01.T01 MTR_8g023400 45.570 79 40 2 113 190 92 168 2.53e-19 85.1
MsG0480023429.01.T01 MTR_3g110190 46.154 78 41 1 111 188 64 140 2.89e-19 85.1
MsG0480023429.01.T01 MTR_3g071300 30.872 149 96 3 56 200 22 167 7.50e-19 80.9
MsG0480023429.01.T01 MTR_6g055030 36.667 120 72 2 65 182 51 168 1.10e-18 83.2
MsG0480023429.01.T01 MTR_7g117540 57.895 57 24 0 132 188 93 149 3.01e-18 81.6
MsG0480023429.01.T01 MTR_4g120270 44.595 74 34 2 111 182 78 146 4.34e-18 80.9
MsG0480023429.01.T01 MTR_6g087150 32.468 154 94 2 30 183 19 162 5.06e-18 82.0
MsG0480023429.01.T01 MTR_5g064980 39.796 98 54 2 90 185 88 182 5.58e-18 82.0
MsG0480023429.01.T01 MTR_5g082940 37.405 131 72 4 80 209 44 165 7.85e-18 78.2
MsG0480023429.01.T01 MTR_4g063070 43.750 80 44 1 104 182 299 378 1.23e-17 80.9
MsG0480023429.01.T01 MTR_4g056590 43.590 78 39 2 112 189 99 171 1.67e-17 77.8
MsG0480023429.01.T01 MTR_3g099650 43.590 78 42 1 111 186 105 182 2.03e-17 80.5
MsG0480023429.01.T01 MTR_5g064890 32.759 116 75 2 73 186 86 200 3.17e-17 79.7
MsG0480023429.01.T01 MTR_7g116220 39.744 78 45 1 112 187 69 146 4.60e-17 76.3
MsG0480023429.01.T01 MTR_2g096350 61.702 47 18 0 136 182 131 177 4.80e-17 77.0
MsG0480023429.01.T01 MTR_5g071930 50.000 76 34 2 112 187 65 136 5.54e-17 76.6
MsG0480023429.01.T01 MTR_3g464780 43.590 78 41 1 112 186 101 178 6.20e-17 77.4
MsG0480023429.01.T01 MTR_3g078470 37.374 99 60 2 88 185 52 149 8.11e-17 76.6
MsG0480023429.01.T01 MTR_7g076250 38.393 112 60 3 111 221 61 164 9.36e-17 75.9
MsG0480023429.01.T01 MTR_4g030070 31.034 116 76 2 103 218 75 186 9.41e-17 76.6
MsG0480023429.01.T01 MTR_1g492830 37.079 89 56 0 99 187 47 135 1.36e-16 75.9
MsG0480023429.01.T01 MTR_4g129420 43.038 79 45 0 108 186 112 190 1.39e-16 78.6
MsG0480023429.01.T01 MTR_3g078450 39.130 92 55 1 95 185 58 149 3.34e-16 74.7
MsG0480023429.01.T01 MTR_5g030010 39.241 79 47 1 108 186 117 194 5.88e-16 76.3
MsG0480023429.01.T01 MTR_8g089880 37.500 80 49 1 113 192 127 205 6.00e-16 75.1
MsG0480023429.01.T01 MTR_2g436100 39.241 79 47 1 104 182 84 161 6.67e-16 75.1
MsG0480023429.01.T01 MTR_8g066780 33.333 162 82 5 26 182 44 184 7.43e-16 75.9
MsG0480023429.01.T01 MTR_7g116180 39.744 78 45 1 110 185 64 141 9.28e-16 72.8
MsG0480023429.01.T01 MTR_3g100400 43.056 72 40 1 111 182 128 198 1.17e-15 75.5
MsG0480023429.01.T01 MTR_2g055790 32.787 122 73 2 65 186 34 146 1.21e-15 72.8
MsG0480023429.01.T01 MTR_1g074190 31.967 122 69 3 81 190 62 181 1.22e-15 75.1
MsG0480023429.01.T01 MTR_1g070425 39.744 78 45 1 110 185 65 142 1.43e-15 72.4
MsG0480023429.01.T01 MTR_4g093830 42.857 70 39 1 113 182 126 194 1.76e-15 74.7
MsG0480023429.01.T01 MTR_1g070140 38.961 77 47 0 106 182 96 172 2.92e-15 73.9
MsG0480023429.01.T01 MTR_2g090905 37.500 96 52 2 95 182 18 113 5.13e-15 69.3
MsG0480023429.01.T01 MTR_2g009310 60.000 45 18 0 138 182 159 203 5.40e-15 73.6
MsG0480023429.01.T01 MTR_2g090950 41.026 78 41 1 110 182 88 165 5.55e-15 72.0
MsG0480023429.01.T01 MTR_5g026730 30.714 140 78 4 53 182 6 136 5.66e-15 70.5
MsG0480023429.01.T01 MTR_5g064990 39.744 78 45 1 111 186 112 189 6.84e-15 73.2
MsG0480023429.01.T01 MTR_4g108830 34.694 98 62 1 86 183 122 217 7.97e-15 71.2
MsG0480023429.01.T01 MTR_2g041200 33.803 142 64 5 51 182 30 151 1.20e-14 69.7
MsG0480023429.01.T01 MTR_6g007737 31.852 135 81 3 61 185 71 204 1.22e-14 72.4
MsG0480023429.01.T01 MTR_7g079290 42.857 63 36 0 135 197 150 212 1.69e-14 70.1
MsG0480023429.01.T01 MTR_3g091620 41.892 74 42 1 113 186 101 173 2.22e-14 71.6
MsG0480023429.01.T01 MTR_5g066250 40.278 72 42 1 111 182 132 202 2.36e-14 71.6
MsG0480023429.01.T01 MTR_3g114500 38.554 83 47 2 100 182 35 113 2.55e-14 67.8
MsG0480023429.01.T01 MTR_5g034790 40.260 77 45 1 109 185 112 187 2.87e-14 71.2
MsG0480023429.01.T01 MTR_5g092790 43.421 76 40 2 109 182 153 227 3.15e-14 69.7
MsG0480023429.01.T01 MTR_3g086700 36.842 95 53 2 98 185 26 120 3.45e-14 68.9
MsG0480023429.01.T01 MTR_5g076990 35.115 131 75 3 59 182 21 148 4.21e-14 70.5
MsG0480023429.01.T01 MTR_5g009210 38.750 80 48 1 104 182 278 357 4.83e-14 70.5
MsG0480023429.01.T01 MTR_4g108830 34.375 96 61 1 88 183 96 189 5.83e-14 68.2
MsG0480023429.01.T01 MTR_4g106680 38.667 75 45 1 108 182 101 174 6.14e-14 69.7
MsG0480023429.01.T01 MTR_8g028465 38.571 70 40 1 113 182 90 156 6.20e-14 68.6
MsG0480023429.01.T01 MTR_7g108855 37.234 94 49 3 114 198 67 159 6.55e-14 68.2
MsG0480023429.01.T01 MTR_1g056350 39.726 73 40 2 113 182 74 145 7.08e-14 67.4
MsG0480023429.01.T01 MTR_8g074900 41.333 75 39 1 111 185 156 225 8.01e-14 68.6
MsG0480023429.01.T01 MTR_8g099495 38.462 78 47 1 107 183 313 390 9.50e-14 70.1
MsG0480023429.01.T01 MTR_3g086730 36.842 95 53 2 98 185 26 120 1.01e-13 68.6
MsG0480023429.01.T01 MTR_8g063660 37.975 79 48 1 109 187 64 141 1.02e-13 69.3
MsG0480023429.01.T01 MTR_5g009190 37.500 80 49 1 104 182 257 336 1.09e-13 69.3
MsG0480023429.01.T01 MTR_3g091200 39.437 71 42 1 113 182 303 373 1.41e-13 69.3
MsG0480023429.01.T01 MTR_3g012550 27.407 135 89 3 52 182 21 150 2.18e-13 66.2
MsG0480023429.01.T01 MTR_6g007670 41.096 73 41 1 110 182 5 75 2.45e-13 67.4
MsG0480023429.01.T01 MTR_6g007670 43.662 71 40 0 112 182 144 214 5.49e-12 63.9
MsG0480023429.01.T01 MTR_5g022920 37.662 77 47 1 110 185 158 234 2.74e-13 67.0
MsG0480023429.01.T01 MTR_7g059360 43.478 69 38 1 116 183 133 201 2.82e-13 67.0
MsG0480023429.01.T01 MTR_5g026720 53.488 43 20 0 140 182 93 135 2.97e-13 65.5
MsG0480023429.01.T01 MTR_6g007680 39.726 73 43 1 110 182 37 108 4.77e-13 65.1
MsG0480023429.01.T01 MTR_7g079280 32.143 112 62 3 113 223 80 178 4.92e-13 65.5
MsG0480023429.01.T01 MTR_8g032690 41.667 96 39 4 140 226 19 106 5.47e-13 63.5
MsG0480023429.01.T01 MTR_5g092750 43.421 76 40 2 109 182 153 227 7.47e-13 65.9
MsG0480023429.01.T01 MTR_5g009200 39.437 71 42 1 113 182 322 392 7.85e-13 67.0
MsG0480023429.01.T01 MTR_8g019710 60.000 45 18 0 138 182 52 96 8.77e-13 63.9
MsG0480023429.01.T01 MTR_2g079320 32.075 106 67 1 85 185 99 204 1.01e-12 65.1
MsG0480023429.01.T01 MTR_3g087900 49.231 65 28 3 123 186 55 115 1.04e-12 63.9
MsG0480023429.01.T01 MTR_8g066740 32.824 131 78 3 59 182 21 148 1.33e-12 66.2
MsG0480023429.01.T01 MTR_1g026070 36.111 72 42 1 111 182 46 113 1.43e-12 63.2
MsG0480023429.01.T01 MTR_7g116200 38.356 73 43 1 110 182 65 135 3.19e-12 63.2
MsG0480023429.01.T01 MTR_8g071815 53.488 43 20 0 140 182 90 132 3.70e-12 63.2
MsG0480023429.01.T01 MTR_3g078120 36.905 84 52 1 100 182 44 127 5.30e-12 62.0
MsG0480023429.01.T01 MTR_4g022410 32.292 96 65 0 103 198 76 171 5.34e-12 62.8
MsG0480023429.01.T01 MTR_8g099515 41.667 72 39 2 113 182 309 379 6.39e-12 64.7
MsG0480023429.01.T01 MTR_3g081030 33.673 98 60 3 103 200 86 178 1.17e-11 62.4
MsG0480023429.01.T01 MTR_7g117350 34.667 75 44 1 113 182 290 364 1.23e-11 63.5
MsG0480023429.01.T01 MTR_7g117350 34.667 75 44 1 113 182 282 356 1.28e-11 63.5
MsG0480023429.01.T01 MTR_8g027745 36.620 71 44 1 113 182 286 356 1.57e-11 63.2
MsG0480023429.01.T01 MTR_5g096410 37.778 90 41 3 110 185 238 326 1.86e-11 62.8
MsG0480023429.01.T01 MTR_5g096410 37.778 90 41 3 110 185 250 338 1.95e-11 62.8
MsG0480023429.01.T01 MTR_5g096410 37.778 90 41 3 110 185 247 335 2.02e-11 62.8
MsG0480023429.01.T01 MTR_7g096690 32.500 80 51 2 106 182 63 142 2.05e-11 62.8
MsG0480023429.01.T01 MTR_6g055030 53.659 41 19 0 142 182 97 137 3.82e-11 61.6
MsG0480023429.01.T01 MTR_4g106960 54.000 50 22 1 133 182 171 219 4.35e-11 62.0
MsG0480023429.01.T01 MTR_5g041310 56.818 44 18 1 139 182 114 156 4.57e-11 60.8
MsG0480023429.01.T01 MTR_4g106960 54.000 50 22 1 133 182 171 219 4.73e-11 61.6
MsG0480023429.01.T01 MTR_4g106960 54.000 50 22 1 133 182 228 276 5.36e-11 62.0
MsG0480023429.01.T01 MTR_7g116210 36.986 73 44 1 110 182 7 77 5.80e-11 58.2
MsG0480023429.01.T01 MTR_4g106960 54.000 50 22 1 133 182 228 276 6.05e-11 61.6
MsG0480023429.01.T01 MTR_8g027980 33.333 75 48 1 116 188 93 167 6.46e-11 60.8
MsG0480023429.01.T01 MTR_5g041330 56.818 44 18 1 139 182 104 146 6.81e-11 60.1
MsG0480023429.01.T01 MTR_3g078540 41.270 63 36 1 127 188 66 128 7.56e-11 58.9
MsG0480023429.01.T01 MTR_4g116460 38.571 70 39 3 116 182 415 483 8.66e-11 61.2
MsG0480023429.01.T01 MTR_4g116460 38.571 70 39 3 116 182 458 526 9.54e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023429.01.T01 AT1G49230 52.752 218 83 4 11 223 17 219 7.35e-72 218
MsG0480023429.01.T01 AT1G49210 47.907 215 91 4 21 226 23 225 5.96e-62 193
MsG0480023429.01.T01 AT1G49220 48.792 207 80 5 21 214 23 216 4.09e-61 192
MsG0480023429.01.T01 AT1G49200 46.296 216 93 5 21 226 24 226 1.64e-60 189
MsG0480023429.01.T01 AT3G18773 44.053 227 107 7 6 226 8 220 3.61e-55 176
MsG0480023429.01.T01 AT5G05280 52.817 142 60 2 46 187 26 160 2.52e-45 149
MsG0480023429.01.T01 AT3G10910 54.135 133 57 2 57 186 29 160 1.26e-42 142
MsG0480023429.01.T01 AT1G20823 42.771 166 82 3 23 186 3 157 2.48e-38 132
MsG0480023429.01.T01 AT1G76410 44.371 151 75 2 41 188 8 152 9.83e-38 130
MsG0480023429.01.T01 AT5G01880 45.198 177 71 5 12 187 1 152 1.58e-31 113
MsG0480023429.01.T01 AT2G17450 41.912 136 58 4 58 185 25 147 7.89e-31 112
MsG0480023429.01.T01 AT5G47610 36.875 160 89 2 23 182 2 149 2.44e-29 108
MsG0480023429.01.T01 AT4G35480 39.456 147 69 3 54 186 19 159 3.00e-28 106
MsG0480023429.01.T01 AT4G17245 39.098 133 66 3 51 182 27 145 4.77e-25 97.1
MsG0480023429.01.T01 AT3G05200 33.333 156 97 3 65 213 49 204 2.56e-20 88.6
MsG0480023429.01.T01 AT1G72200 33.117 154 96 5 56 204 58 209 1.47e-19 86.7
MsG0480023429.01.T01 AT2G27940 39.604 101 58 2 99 199 101 198 1.59e-19 84.3
MsG0480023429.01.T01 AT1G72310 48.718 78 38 1 109 186 98 173 3.05e-19 85.1
MsG0480023429.01.T01 AT4G09120 35.115 131 77 3 54 182 41 165 1.68e-18 83.2
MsG0480023429.01.T01 AT1G53820 44.872 78 39 2 109 185 91 165 2.47e-18 82.4
MsG0480023429.01.T01 AT4G09110 34.711 121 71 3 64 182 51 165 2.99e-18 82.0
MsG0480023429.01.T01 AT3G14320 49.296 71 34 1 113 183 63 131 3.62e-18 79.7
MsG0480023429.01.T01 AT1G35330 34.351 131 75 5 64 185 46 174 4.18e-18 81.6
MsG0480023429.01.T01 AT4G40070 36.154 130 78 3 64 191 49 175 7.62e-18 80.9
MsG0480023429.01.T01 AT3G16720 36.893 103 59 3 109 211 90 186 1.19e-17 80.1
MsG0480023429.01.T01 AT1G22500 30.000 150 101 3 53 200 31 178 2.83e-17 80.1
MsG0480023429.01.T01 AT5G57750 41.333 75 44 0 109 183 91 165 3.34e-17 77.4
MsG0480023429.01.T01 AT4G30400 42.667 75 43 0 108 182 102 176 4.29e-17 79.7
MsG0480023429.01.T01 AT1G28040 37.374 99 59 2 87 182 197 295 4.45e-17 78.6
MsG0480023429.01.T01 AT1G04360 29.771 131 82 2 62 182 46 176 4.70e-17 79.3
MsG0480023429.01.T01 AT1G74410 38.000 100 55 2 86 185 129 221 7.41e-17 76.6
MsG0480023429.01.T01 AT2G35000 32.576 132 82 4 61 186 51 181 9.71e-17 78.6
MsG0480023429.01.T01 AT5G27420 45.570 79 39 2 112 187 94 171 9.74e-17 78.2
MsG0480023429.01.T01 AT2G20030 47.143 70 36 1 113 182 98 166 1.83e-16 77.8
MsG0480023429.01.T01 AT4G17905 66.667 45 15 0 138 182 179 223 2.23e-16 77.0
MsG0480023429.01.T01 AT2G18650 43.590 78 44 0 109 186 95 172 2.23e-16 77.8
MsG0480023429.01.T01 AT4G17905 66.667 45 15 0 138 182 153 197 2.24e-16 76.6
MsG0480023429.01.T01 AT1G23980 31.250 176 93 7 34 186 20 190 2.89e-16 77.0
MsG0480023429.01.T01 AT4G09100 40.506 79 45 2 106 182 49 127 3.09e-16 72.8
MsG0480023429.01.T01 AT5G17600 43.056 72 40 1 111 182 114 184 3.59e-16 76.6
MsG0480023429.01.T01 AT4G15975 37.363 91 55 1 95 185 33 121 4.04e-16 75.1
MsG0480023429.01.T01 AT3G03550 59.184 49 20 0 138 186 157 205 4.05e-16 76.6
MsG0480023429.01.T01 AT2G25410 42.553 94 49 2 91 182 279 369 4.28e-16 76.6
MsG0480023429.01.T01 AT2G46493 34.653 101 63 2 85 182 80 180 4.60e-16 73.9
MsG0480023429.01.T01 AT4G09130 45.205 73 38 1 112 182 90 162 4.67e-16 76.3
MsG0480023429.01.T01 AT2G46494 29.197 137 91 2 52 182 222 358 9.69e-16 75.5
MsG0480023429.01.T01 AT4G28890 43.662 71 39 1 113 183 97 166 1.13e-15 75.5
MsG0480023429.01.T01 AT4G10150 30.000 130 85 3 57 186 34 157 1.98e-15 73.2
MsG0480023429.01.T01 AT5G05810 43.056 72 40 1 111 182 118 188 2.48e-15 74.7
MsG0480023429.01.T01 AT3G48030 37.931 87 48 1 105 185 88 174 2.54e-15 73.6
MsG0480023429.01.T01 AT2G35420 44.444 72 39 1 111 182 75 145 2.96e-15 72.8
MsG0480023429.01.T01 AT5G10380 39.241 79 47 1 108 186 104 181 3.49e-15 73.6
MsG0480023429.01.T01 AT1G32361 34.532 139 83 5 83 221 101 231 4.24e-15 73.6
MsG0480023429.01.T01 AT3G48030 37.931 87 48 1 105 185 166 252 4.45e-15 73.6
MsG0480023429.01.T01 AT3G19140 36.538 104 62 2 80 183 23 122 4.48e-15 70.1
MsG0480023429.01.T01 AT4G10160 32.283 127 74 4 64 186 25 143 4.98e-15 72.0
MsG0480023429.01.T01 AT3G18930 37.391 115 56 5 113 216 120 229 5.95e-15 73.6
MsG0480023429.01.T01 AT3G18930 37.391 115 56 5 113 216 120 229 5.95e-15 73.6
MsG0480023429.01.T01 AT3G18930 37.391 115 56 5 113 216 120 229 5.95e-15 73.6
MsG0480023429.01.T01 AT2G34990 29.771 131 90 1 54 182 8 138 6.44e-15 72.8
MsG0480023429.01.T01 AT2G34990 29.771 131 90 1 54 182 30 160 7.51e-15 72.8
MsG0480023429.01.T01 AT1G72220 57.778 45 19 0 138 182 175 219 1.06e-14 72.8
MsG0480023429.01.T01 AT5G43420 27.950 161 90 4 43 182 25 180 1.20e-14 72.4
MsG0480023429.01.T01 AT5G66070 44.000 75 39 2 111 185 150 221 1.42e-14 70.5
MsG0480023429.01.T01 AT5G66070 44.000 75 39 2 111 185 150 221 1.42e-14 70.5
MsG0480023429.01.T01 AT5G07040 27.612 134 84 3 52 183 15 137 1.59e-14 68.9
MsG0480023429.01.T01 AT5G66070 44.000 75 39 2 111 185 174 245 2.20e-14 70.5
MsG0480023429.01.T01 AT2G35910 39.474 76 45 1 113 188 121 195 2.28e-14 70.1
MsG0480023429.01.T01 AT4G17920 31.538 130 78 5 61 185 32 155 2.29e-14 70.9
MsG0480023429.01.T01 AT5G06490 33.663 101 52 2 113 207 96 187 2.68e-14 69.3
MsG0480023429.01.T01 AT5G42200 39.189 74 44 1 109 182 74 146 3.27e-14 68.2
MsG0480023429.01.T01 AT4G33565 52.941 51 24 0 138 188 215 265 3.46e-14 71.2
MsG0480023429.01.T01 AT3G62690 48.438 64 32 1 119 182 93 155 4.61e-14 69.7
MsG0480023429.01.T01 AT5G58580 34.653 101 66 0 111 211 109 209 5.03e-14 70.1
MsG0480023429.01.T01 AT1G33480 29.825 114 75 2 113 226 75 183 5.17e-14 69.7
MsG0480023429.01.T01 AT2G46495 40.789 76 43 1 109 182 259 334 6.18e-14 70.1
MsG0480023429.01.T01 AT2G46495 40.789 76 43 1 109 182 287 362 6.47e-14 70.5
MsG0480023429.01.T01 AT5G53110 39.437 71 42 1 113 182 302 372 8.11e-14 70.1
MsG0480023429.01.T01 AT5G36001 63.043 46 17 0 137 182 261 306 1.89e-13 68.6
MsG0480023429.01.T01 AT2G34000 26.984 126 87 2 61 183 11 134 2.43e-13 65.9
MsG0480023429.01.T01 AT2G46160 36.145 83 46 1 113 188 104 186 2.47e-13 67.0
MsG0480023429.01.T01 AT2G46160 36.145 83 46 1 113 188 104 186 2.47e-13 67.0
MsG0480023429.01.T01 AT2G47560 40.000 80 45 2 104 182 73 150 3.90e-13 66.6
MsG0480023429.01.T01 AT3G11110 37.349 83 52 0 100 182 67 149 6.13e-13 64.7
MsG0480023429.01.T01 AT5G40250 50.000 48 24 0 139 186 142 189 6.64e-13 67.4
MsG0480023429.01.T01 AT2G18670 34.667 75 49 0 108 182 78 152 7.10e-13 65.1
MsG0480023429.01.T01 AT4G35840 39.506 81 41 2 110 185 159 236 7.67e-13 65.9
MsG0480023429.01.T01 AT2G17730 38.158 76 45 1 110 183 164 239 1.51e-12 65.1
MsG0480023429.01.T01 AT2G42360 36.000 75 48 0 108 182 76 150 1.59e-12 65.1
MsG0480023429.01.T01 AT4G26400 39.506 81 41 2 102 182 210 282 1.81e-12 66.2
MsG0480023429.01.T01 AT4G26400 39.506 81 41 2 102 182 210 282 1.81e-12 66.2
MsG0480023429.01.T01 AT3G61550 30.400 125 68 4 106 220 92 207 2.74e-12 63.9
MsG0480023429.01.T01 AT4G26580 37.037 81 45 2 110 185 254 333 5.16e-12 64.7
MsG0480023429.01.T01 AT4G26580 37.037 81 45 2 110 185 254 333 5.16e-12 64.7
MsG0480023429.01.T01 AT2G42350 37.333 75 45 1 108 182 70 142 6.22e-12 63.2
MsG0480023429.01.T01 AT5G56340 44.118 68 30 2 115 182 241 300 7.06e-12 64.3
MsG0480023429.01.T01 AT3G20395 33.663 101 63 2 85 185 120 216 1.49e-11 62.4
MsG0480023429.01.T01 AT3G47990 54.000 50 22 1 133 182 171 219 1.97e-11 62.8
MsG0480023429.01.T01 AT3G47990 54.000 50 22 1 133 182 171 219 1.97e-11 62.8
MsG0480023429.01.T01 AT3G47990 54.000 50 22 1 133 182 171 219 1.97e-11 62.8
MsG0480023429.01.T01 AT3G47990 54.000 50 22 1 133 182 228 276 2.18e-11 62.8
MsG0480023429.01.T01 AT3G47990 54.000 50 22 1 133 182 212 260 2.33e-11 62.8
MsG0480023429.01.T01 AT1G35630 42.029 69 38 2 116 183 209 276 2.51e-11 62.4
MsG0480023429.01.T01 AT2G03000 51.064 47 22 1 139 185 480 525 2.80e-11 62.8
MsG0480023429.01.T01 AT1G53010 50.000 50 25 0 139 188 129 178 3.16e-11 60.5
MsG0480023429.01.T01 AT1G35625 28.571 133 81 4 52 183 157 276 9.28e-11 60.8

Find 47 sgRNAs with CRISPR-Local

Find 48 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATCATAAGGTGCGCTTTA+AGG 0.098073 4:-85116709 MsG0480023429.01.T01:CDS
AATTCAACCAACTCATATTT+TGG 0.106711 4:-85116812 MsG0480023429.01.T01:CDS
TGAGTTGAAACTACCAAATT+TGG 0.175122 4:-85116561 MsG0480023429.01.T01:CDS
ATTGATAATCAATTGGATTT+TGG 0.213343 4:+85116870 None:intergenic
GCACCTTATGATGGAGTTTA+AGG 0.230395 4:+85116718 None:intergenic
CGGTGCCAGAAACTATTATT+AGG 0.257137 4:-85116343 MsG0480023429.01.T01:CDS
TGGAAACCATGATTGCATTT+AGG 0.272632 4:+85116479 None:intergenic
CGAAGAAGAGCCGTTGTTTA+GGG 0.291613 4:+85116673 None:intergenic
TCGAAGAAGAGCCGTTGTTT+AGG 0.297762 4:+85116672 None:intergenic
ACACACTCTGTATCCAAATT+TGG 0.302122 4:+85116548 None:intergenic
TGAATCCTAATAATAGTTTC+TGG 0.307133 4:+85116338 None:intergenic
AATATGAGTTGGTTGAATTA+TGG 0.317058 4:+85116816 None:intergenic
CAACAACTCTTCACCTCAAT+TGG 0.382798 4:-85116642 MsG0480023429.01.T01:CDS
GAGACTTGTCGAAAGATTGT+TGG 0.413029 4:-85116389 MsG0480023429.01.T01:CDS
GTTGGTGATTGATAATCAAT+TGG 0.420758 4:+85116863 None:intergenic
GGAAGCACCACCTATGTTGC+CGG 0.443914 4:-85116363 MsG0480023429.01.T01:CDS
ATGTTCGTTGCATCGACAAA+TGG 0.447158 4:-85116457 MsG0480023429.01.T01:CDS
ATAGTTACGTTCAAAAGCTT+CGG 0.462496 4:+85116304 None:intergenic
TTATGGTTGTGTGTGAGAAC+AGG 0.463446 4:+85116833 None:intergenic
AGCAAATAAGAGCACACAAT+AGG 0.463910 4:+85116747 None:intergenic
TCAGTTGAATAACTTACTGT+TGG 0.468597 4:+85116581 None:intergenic
ATTCCTTTGTTAGCCAATTG+AGG 0.468663 4:+85116629 None:intergenic
TTGTCGAAAGATTGTTGGAT+TGG 0.474737 4:-85116384 MsG0480023429.01.T01:CDS
CCTTAAAGCGCACCTTATGA+TGG 0.477521 4:+85116709 None:intergenic
CAGTTGAATAACTTACTGTT+GGG 0.481542 4:+85116582 None:intergenic
GTGTGTGAGAACAGGGGAGC+TGG 0.495001 4:+85116841 None:intergenic
ACGAATTCCAAAATATGAGT+TGG 0.498815 4:+85116805 None:intergenic
TTGTAGAATCTCACACAAGA+AGG 0.511006 4:-85116901 MsG0480023429.01.T01:CDS
TTGCCTTAAACTCCATCATA+AGG 0.515596 4:-85116721 MsG0480023429.01.T01:CDS
ATGGAAGAGTGGTGAAGTAA+AGG 0.523047 4:+85116931 None:intergenic
CTAATAATAGTTTCTGGCAC+CGG 0.527248 4:+85116344 None:intergenic
GTTTCTGGCACCGGCAACAT+AGG 0.529637 4:+85116353 None:intergenic
TGTCTCTCAGAGTTCACAAA+AGG 0.544000 4:-85116521 MsG0480023429.01.T01:CDS
TATGGTTGTGTGTGAGAACA+GGG 0.557986 4:+85116834 None:intergenic
ATTTGTCGATGCAACGAACA+TGG 0.562919 4:+85116459 None:intergenic
TAACAAAGGAATCAAGAAGA+AGG 0.567789 4:-85116618 MsG0480023429.01.T01:CDS
AGGAGGCACTGTCTGCACTT+AGG 0.573168 4:+85116413 None:intergenic
GAGATTCTACAAGAAGCTCA+TGG 0.595637 4:+85116912 None:intergenic
CAATCTTTCGACAAGTCTCA+AGG 0.597223 4:+85116393 None:intergenic
TCACCTCAATTGGCTAACAA+AGG 0.606400 4:-85116632 MsG0480023429.01.T01:CDS
TCAAAAGCTTCGGCGTCTAG+CGG 0.624371 4:+85116314 None:intergenic
ACAAGAAGCTCATGGAAGAG+TGG 0.629363 4:+85116920 None:intergenic
TCTGGCACCGGCAACATAGG+TGG 0.632227 4:+85116356 None:intergenic
GTGAGAACAGGGGAGCTGGT+TGG 0.655380 4:+85116845 None:intergenic
TCGAACGTAGCCCTAAACAA+CGG 0.719891 4:-85116683 MsG0480023429.01.T01:CDS
ATGGTTGTGTGTGAGAACAG+GGG 0.776032 4:+85116835 None:intergenic
TCTTTCGACAAGTCTCAAGG+AGG 0.776052 4:+85116396 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTGATAATCAATTGGATTT+TGG + Chr4:85116369-85116388 None:intergenic 20.0%
! TGAATCCTAATAATAGTTTC+TGG + Chr4:85116901-85116920 None:intergenic 25.0%
!! AATTCAACCAACTCATATTT+TGG - Chr4:85116424-85116443 MsG0480023429.01.T01:CDS 25.0%
!! ATTTTACCTAAATGCAATCA+TGG - Chr4:85116751-85116770 MsG0480023429.01.T01:CDS 25.0%
!!! AATATGAGTTGGTTGAATTA+TGG + Chr4:85116423-85116442 None:intergenic 25.0%
ACGAATTCCAAAATATGAGT+TGG + Chr4:85116434-85116453 None:intergenic 30.0%
ATAGTTACGTTCAAAAGCTT+CGG + Chr4:85116935-85116954 None:intergenic 30.0%
CAGTTGAATAACTTACTGTT+GGG + Chr4:85116657-85116676 None:intergenic 30.0%
TAACAAAGGAATCAAGAAGA+AGG - Chr4:85116618-85116637 MsG0480023429.01.T01:CDS 30.0%
TCAGTTGAATAACTTACTGT+TGG + Chr4:85116658-85116677 None:intergenic 30.0%
! TGAGTTGAAACTACCAAATT+TGG - Chr4:85116675-85116694 MsG0480023429.01.T01:CDS 30.0%
!! GTTGGTGATTGATAATCAAT+TGG + Chr4:85116376-85116395 None:intergenic 30.0%
ACACACTCTGTATCCAAATT+TGG + Chr4:85116691-85116710 None:intergenic 35.0%
ATTCCTTTGTTAGCCAATTG+AGG + Chr4:85116610-85116629 None:intergenic 35.0%
TGGAAACCATGATTGCATTT+AGG + Chr4:85116760-85116779 None:intergenic 35.0%
TTGCCTTAAACTCCATCATA+AGG - Chr4:85116515-85116534 MsG0480023429.01.T01:CDS 35.0%
TTGTAGAATCTCACACAAGA+AGG - Chr4:85116335-85116354 MsG0480023429.01.T01:CDS 35.0%
TTGTCGAAAGATTGTTGGAT+TGG - Chr4:85116852-85116871 MsG0480023429.01.T01:CDS 35.0%
! AGCAAATAAGAGCACACAAT+AGG + Chr4:85116492-85116511 None:intergenic 35.0%
!! CTAATAATAGTTTCTGGCAC+CGG + Chr4:85116895-85116914 None:intergenic 35.0%
ATGGAAGAGTGGTGAAGTAA+AGG + Chr4:85116308-85116327 None:intergenic 40.0%
ATTTGTCGATGCAACGAACA+TGG + Chr4:85116780-85116799 None:intergenic 40.0%
CAACAACTCTTCACCTCAAT+TGG - Chr4:85116594-85116613 MsG0480023429.01.T01:CDS 40.0%
CAATCTTTCGACAAGTCTCA+AGG + Chr4:85116846-85116865 None:intergenic 40.0%
GAGACTTGTCGAAAGATTGT+TGG - Chr4:85116847-85116866 MsG0480023429.01.T01:CDS 40.0%
GAGATTCTACAAGAAGCTCA+TGG + Chr4:85116327-85116346 None:intergenic 40.0%
TATGGTTGTGTGTGAGAACA+GGG + Chr4:85116405-85116424 None:intergenic 40.0%
TCACCTCAATTGGCTAACAA+AGG - Chr4:85116604-85116623 MsG0480023429.01.T01:CDS 40.0%
TGTCTCTCAGAGTTCACAAA+AGG - Chr4:85116715-85116734 MsG0480023429.01.T01:CDS 40.0%
TTATGGTTGTGTGTGAGAAC+AGG + Chr4:85116406-85116425 None:intergenic 40.0%
! ATGTTCGTTGCATCGACAAA+TGG - Chr4:85116779-85116798 MsG0480023429.01.T01:CDS 40.0%
! CGGTGCCAGAAACTATTATT+AGG - Chr4:85116893-85116912 MsG0480023429.01.T01:CDS 40.0%
! GCACCTTATGATGGAGTTTA+AGG + Chr4:85116521-85116540 None:intergenic 40.0%
ACAAGAAGCTCATGGAAGAG+TGG + Chr4:85116319-85116338 None:intergenic 45.0%
ATGGTTGTGTGTGAGAACAG+GGG + Chr4:85116404-85116423 None:intergenic 45.0%
CCATCATAAGGTGCGCTTTA+AGG - Chr4:85116527-85116546 MsG0480023429.01.T01:CDS 45.0%
CCTTAAAGCGCACCTTATGA+TGG + Chr4:85116530-85116549 None:intergenic 45.0%
CGAAGAAGAGCCGTTGTTTA+GGG + Chr4:85116566-85116585 None:intergenic 45.0%
TCGAACGTAGCCCTAAACAA+CGG - Chr4:85116553-85116572 MsG0480023429.01.T01:CDS 45.0%
TCGAAGAAGAGCCGTTGTTT+AGG + Chr4:85116567-85116586 None:intergenic 45.0%
TCTTTCGACAAGTCTCAAGG+AGG + Chr4:85116843-85116862 None:intergenic 45.0%
TCAAAAGCTTCGGCGTCTAG+CGG + Chr4:85116925-85116944 None:intergenic 50.0%
!! AGGAGGCACTGTCTGCACTT+AGG + Chr4:85116826-85116845 None:intergenic 55.0%
!! GGAAGCACCACCTATGTTGC+CGG - Chr4:85116873-85116892 MsG0480023429.01.T01:CDS 55.0%
!! GTTTCTGGCACCGGCAACAT+AGG + Chr4:85116886-85116905 None:intergenic 55.0%
GTGAGAACAGGGGAGCTGGT+TGG + Chr4:85116394-85116413 None:intergenic 60.0%
GTGTGTGAGAACAGGGGAGC+TGG + Chr4:85116398-85116417 None:intergenic 60.0%
!! TCTGGCACCGGCAACATAGG+TGG + Chr4:85116883-85116902 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr4 gene 85116289 85116969 85116289 ID=MsG0480023429.01;Name=MsG0480023429.01
Chr4 mRNA 85116289 85116969 85116289 ID=MsG0480023429.01.T01;Parent=MsG0480023429.01;Name=MsG0480023429.01.T01;_AED=0.30;_eAED=0.30;_QI=0|-1|0|1|-1|1|1|0|226
Chr4 exon 85116289 85116969 85116289 ID=MsG0480023429.01.T01:exon:2824;Parent=MsG0480023429.01.T01
Chr4 CDS 85116289 85116969 85116289 ID=MsG0480023429.01.T01:cds;Parent=MsG0480023429.01.T01
Gene Sequence

>MsG0480023429.01.T01

ATGTATGCTTCTACTTCCTTTACTTCACCACTCTTCCATGAGCTTCTTGTAGAATCTCACACAAGAAGGTTGCTCTTCCAAAATCCAATTGATTATCAATCACCAACCAGCTCCCCTGTTCTCACACACAACCATAATTCAACCAACTCATATTTTGGAATTCGTGAATTTGATGCGAATGTTGTGATGATACTTGCAGTCCTATTGTGTGCTCTTATTTGCTCACTTGCCTTAAACTCCATCATAAGGTGCGCTTTAAGGTTTTCGAACGTAGCCCTAAACAACGGCTCTTCTTCGAGTTCAAGCAACAACTCTTCACCTCAATTGGCTAACAAAGGAATCAAGAAGAAGGCTCTCAAGACATTCCCAACAGTAAGTTATTCAACTGAGTTGAAACTACCAAATTTGGATACAGAGTGTGTGATATGTCTCTCAGAGTTCACAAAAGGTGAAAAAGTGCGCATTTTACCTAAATGCAATCATGGTTTCCATGTTCGTTGCATCGACAAATGGCTAAAAGCACACTCATCATGTCCTAAGTGCAGACAGTGCCTCCTTGAGACTTGTCGAAAGATTGTTGGATTGGAAGCACCACCTATGTTGCCGGTGCCAGAAACTATTATTAGGATTCAACCGCTAGACGCCGAAGCTTTTGAACGTAACTATAGAGAATTAAGCTGA

Protein sequence

>MsG0480023429.01.T01

MYASTSFTSPLFHELLVESHTRRLLFQNPIDYQSPTSSPVLTHNHNSTNSYFGIREFDANVVMILAVLLCALICSLALNSIIRCALRFSNVALNNGSSSSSSNNSSPQLANKGIKKKALKTFPTVSYSTELKLPNLDTECVICLSEFTKGEKVRILPKCNHGFHVRCIDKWLKAHSSCPKCRQCLLETCRKIVGLEAPPMLPVPETIIRIQPLDAEAFERNYRELS*