Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0509670 | XP_003601065.1 | 97.727 | 220 | 2 | 1 | 1 | 220 | 1 | 217 | 9.05e-156 | 440 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0509670 | sp|Q6IDL4|P24D3_ARATH | 63.415 | 205 | 71 | 2 | 18 | 220 | 15 | 217 | 6.37e-96 | 281 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0509670 | B7FMU8 | 97.727 | 220 | 2 | 1 | 1 | 220 | 1 | 217 | 4.32e-156 | 440 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0035020 | Msa0509670 | 0.835049 | 2.103913e-56 | -8.615850e-47 |
| Msa0061500 | Msa0509670 | 0.804403 | 2.197218e-49 | -8.615850e-47 |
| Msa0092410 | Msa0509670 | 0.824551 | 7.590653e-54 | -8.615850e-47 |
| Msa0137800 | Msa0509670 | 0.864003 | 1.661356e-64 | -8.615850e-47 |
| Msa0189040 | Msa0509670 | 0.804484 | 2.112559e-49 | -8.615850e-47 |
| Msa0215590 | Msa0509670 | 0.830478 | 2.870732e-55 | -8.615850e-47 |
| Msa0217700 | Msa0509670 | 0.822139 | 2.779062e-53 | -8.615850e-47 |
| Msa0236070 | Msa0509670 | 0.803611 | 3.209256e-49 | -8.615850e-47 |
| Msa0364720 | Msa0509670 | 0.810254 | 1.263053e-50 | -8.615850e-47 |
| Msa0369920 | Msa0509670 | 0.953244 | 4.200817e-111 | -8.615850e-47 |
| Msa0371950 | Msa0509670 | 0.862135 | 6.279688e-64 | -8.615850e-47 |
| Msa0382370 | Msa0509670 | 0.839418 | 1.603621e-57 | -8.615850e-47 |
| Msa0417330 | Msa0509670 | 0.885218 | 9.825699e-72 | -8.615850e-47 |
| Msa0432160 | Msa0509670 | 0.837351 | 5.470832e-57 | -8.615850e-47 |
| Msa0455760 | Msa0509670 | 0.815553 | 8.717577e-52 | -8.615850e-47 |
| Msa0468320 | Msa0509670 | 0.801265 | 9.768050e-49 | -8.615850e-47 |
| Msa0476680 | Msa0509670 | 0.839960 | 1.159309e-57 | -8.615850e-47 |
| Msa0481970 | Msa0509670 | 0.814161 | 1.773784e-51 | -8.615850e-47 |
| Msa0241140 | Msa0509670 | 0.805644 | 1.208225e-49 | -8.615850e-47 |
| Msa0255850 | Msa0509670 | 0.809157 | 2.173786e-50 | -8.615850e-47 |
| Msa0259230 | Msa0509670 | 0.826881 | 2.126115e-54 | -8.615850e-47 |
| Msa0264830 | Msa0509670 | 0.806887 | 6.611102e-50 | -8.615850e-47 |
| Msa0269560 | Msa0509670 | 0.823888 | 1.086972e-53 | -8.615850e-47 |
| Msa0271550 | Msa0509670 | 0.839167 | 1.862658e-57 | -8.615850e-47 |
| Msa0275020 | Msa0509670 | 0.823262 | 1.522559e-53 | -8.615850e-47 |
| Msa0278580 | Msa0509670 | 0.814461 | 1.522581e-51 | -8.615850e-47 |
| Msa0296820 | Msa0509670 | 0.832564 | 8.796885e-56 | -8.615850e-47 |
| Msa0307310 | Msa0509670 | 0.809138 | 2.194141e-50 | -8.615850e-47 |
| Msa0315940 | Msa0509670 | 0.819369 | 1.204310e-52 | -8.615850e-47 |
| Msa0317970 | Msa0509670 | 0.820505 | 6.621451e-53 | -8.615850e-47 |
| Msa0319290 | Msa0509670 | 0.841616 | 4.266002e-58 | -8.615850e-47 |
| Msa0333650 | Msa0509670 | 0.830481 | 2.866663e-55 | -8.615850e-47 |
| Msa0336300 | Msa0509670 | 0.833962 | 3.945050e-56 | -8.615850e-47 |
| Msa0347750 | Msa0509670 | 0.831310 | 1.795210e-55 | -8.615850e-47 |
| Msa0506860 | Msa0509670 | 0.800298 | 1.539308e-48 | -8.615850e-47 |
| Msa0509670 | Msa0518440 | 0.801168 | 1.022472e-48 | -8.615850e-47 |
| Msa0509670 | Msa0521010 | 0.839404 | 1.616960e-57 | -8.615850e-47 |
| Msa0509670 | Msa0521670 | 0.814738 | 1.322417e-51 | -8.615850e-47 |
| Msa0509670 | Msa0581400 | 0.830597 | 2.685489e-55 | -8.615850e-47 |
| Msa0509670 | Msa0592080 | 0.806275 | 8.901766e-50 | -8.615850e-47 |
| Msa0509670 | Msa0614920 | 0.808935 | 2.425279e-50 | -8.615850e-47 |
| Msa0509670 | Msa0638350 | 0.822876 | 1.873142e-53 | -8.615850e-47 |
| Msa0509670 | Msa0638360 | 0.813094 | 3.045704e-51 | -8.615850e-47 |
| Msa0509670 | Msa0711150 | 0.843323 | 1.504148e-58 | -8.615850e-47 |
| Msa0509670 | Msa0715410 | 0.805258 | 1.456338e-49 | -8.615850e-47 |
| Msa0509670 | Msa0721340 | 0.827520 | 1.495257e-54 | -8.615850e-47 |
| Msa0509670 | Msa0741070 | 0.819521 | 1.111816e-52 | -8.615850e-47 |
| Msa0509670 | Msa0749440 | 0.808264 | 3.373229e-50 | -8.615850e-47 |
| Msa0509670 | Msa0750810 | 0.807035 | 6.153255e-50 | -8.615850e-47 |
| Msa0509670 | Msa0751850 | 0.802426 | 5.640864e-49 | -8.615850e-47 |
| Msa0509670 | Msa0797250 | 0.827910 | 1.204798e-54 | -8.615850e-47 |
| Msa0509670 | Msa0822500 | 0.811347 | 7.326046e-51 | -8.615850e-47 |
| Msa0509670 | Msa0870060 | 0.814517 | 1.479867e-51 | -8.615850e-47 |
| Msa0509670 | Msa0877710 | 0.853846 | 1.823652e-61 | -8.615850e-47 |
| Msa0509670 | Msa0880810 | 0.811294 | 7.523187e-51 | -8.615850e-47 |
| Msa0509670 | Msa0902830 | 0.819100 | 1.386346e-52 | -8.615850e-47 |
| Msa0509670 | Msa0919530 | 0.810098 | 1.364798e-50 | -8.615850e-47 |
| Msa0509670 | Msa0935770 | 0.804506 | 2.090954e-49 | -8.615850e-47 |
| Msa0509670 | Msa0951400 | 0.813564 | 2.401566e-51 | -8.615850e-47 |
| Msa0509670 | Msa0953440 | 0.809058 | 2.282154e-50 | -8.615850e-47 |
| Msa0509670 | Msa1011090 | 0.804613 | 1.986162e-49 | -8.615850e-47 |
| Msa0509670 | Msa1026940 | 0.805547 | 1.266188e-49 | -8.615850e-47 |
| Msa0509670 | Msa1032770 | 0.809449 | 1.881623e-50 | -8.615850e-47 |
| Msa0509670 | Msa1063400 | 0.807526 | 4.842768e-50 | -8.615850e-47 |
| Msa0509670 | Msa1063690 | 0.831056 | 2.072227e-55 | -8.615850e-47 |
| Msa0509670 | Msa1064250 | 0.826924 | 2.076756e-54 | -8.615850e-47 |
| Msa0509670 | Msa1076960 | 0.841136 | 5.706367e-58 | -8.615850e-47 |
| Msa0509670 | Msa1089450 | 0.807181 | 5.730280e-50 | -8.615850e-47 |
| Msa0509670 | Msa1089460 | 0.811436 | 7.007814e-51 | -8.615850e-47 |
| Msa0509670 | Msa1096070 | 0.806139 | 9.508306e-50 | -8.615850e-47 |
| Msa0509670 | Msa1104560 | 0.830958 | 2.189956e-55 | -8.615850e-47 |
| Msa0509670 | Msa1122860 | 0.840083 | 1.076442e-57 | -8.615850e-47 |
| Msa0509670 | Msa1218580 | 0.810737 | 9.931227e-51 | -8.615850e-47 |
| Msa0509670 | Msa1221330 | 0.817096 | 3.937009e-52 | -8.615850e-47 |
| Msa0509670 | Msa1225100 | 0.816026 | 6.835024e-52 | -8.615850e-47 |
| Msa0509670 | Msa1238690 | 0.809797 | 1.584050e-50 | -8.615850e-47 |
| Msa0509670 | Msa1280150 | 0.810201 | 1.296453e-50 | -8.615850e-47 |
| Msa0509670 | Msa1329870 | 0.813833 | 2.094990e-51 | -8.615850e-47 |
| Msa0509670 | Msa1330180 | 0.806496 | 7.998633e-50 | -8.615850e-47 |
| Msa0509670 | Msa1332050 | 0.802667 | 5.032982e-49 | -8.615850e-47 |
| Msa0509670 | Msa1338400 | 0.802947 | 4.405685e-49 | -8.615850e-47 |
| Msa0509670 | Msa1345940 | 0.806829 | 6.803504e-50 | -8.615850e-47 |
| Msa0509670 | Msa1355890 | 0.802424 | 5.648276e-49 | -8.615850e-47 |
| Msa0509670 | Msa1371940 | 0.809525 | 1.812724e-50 | -8.615850e-47 |
| Msa0509670 | Msa1380220 | 0.804722 | 1.884622e-49 | -8.615850e-47 |
| Msa0509670 | Msa1382790 | 0.833786 | 4.366664e-56 | -8.615850e-47 |
| Msa0509670 | Msa1390680 | 0.834475 | 2.933650e-56 | -8.615850e-47 |
| Msa0509670 | Msa1392890 | 0.834848 | 2.363427e-56 | -8.615850e-47 |
| Msa0509670 | Msa1405220 | 0.815762 | 7.829110e-52 | -8.615850e-47 |
| Msa0509670 | Msa1407190 | 0.800051 | 1.727928e-48 | -8.615850e-47 |
| Msa0509670 | Msa1418280 | 0.827041 | 1.947051e-54 | -8.615850e-47 |
| Msa0509670 | Msa1432130 | 0.808253 | 3.392046e-50 | -8.615850e-47 |
| Msa0509670 | Msa1436600 | 0.813606 | 2.350476e-51 | -8.615850e-47 |
| Msa0509670 | Msa1457160 | 0.801289 | 9.658192e-49 | -8.615850e-47 |
| Msa0509670 | Msa1462360 | 0.813614 | 2.341051e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0509670 | MtrunA17_Chr3g0114751 | 97.727 | 220 | 2 | 1 | 1 | 220 | 1 | 217 | 8.33e-160 | 440 |
| Msa0509670 | MtrunA17_Chr5g0423921 | 77.895 | 190 | 37 | 2 | 32 | 220 | 27 | 212 | 1.16e-104 | 300 |
| Msa0509670 | MtrunA17_Chr8g0380801 | 67.453 | 212 | 63 | 4 | 12 | 220 | 3 | 211 | 3.31e-94 | 274 |
| Msa0509670 | MtrunA17_Chr2g0277981 | 63.158 | 209 | 69 | 3 | 13 | 220 | 5 | 206 | 1.39e-92 | 270 |
| Msa0509670 | MtrunA17_Chr4g0042721 | 44.330 | 194 | 103 | 3 | 31 | 220 | 24 | 216 | 9.18e-58 | 182 |
| Msa0509670 | MtrunA17_Chr6g0453521 | 44.809 | 183 | 95 | 3 | 43 | 220 | 31 | 212 | 3.81e-55 | 175 |
| Msa0509670 | MtrunA17_Chr8g0380821 | 73.874 | 111 | 27 | 1 | 112 | 220 | 2 | 112 | 1.25e-53 | 167 |
| Msa0509670 | MtrunA17_Chr5g0417891 | 34.081 | 223 | 135 | 5 | 4 | 220 | 3 | 219 | 3.61e-43 | 144 |
| Msa0509670 | MtrunA17_Chr7g0217911 | 41.667 | 144 | 83 | 1 | 78 | 220 | 5 | 148 | 1.88e-38 | 130 |
| Msa0509670 | MtrunA17_Chr5g0417931 | 38.798 | 183 | 104 | 5 | 44 | 220 | 43 | 223 | 2.56e-33 | 119 |
| Msa0509670 | MtrunA17_Chr5g0417901 | 33.520 | 179 | 113 | 3 | 44 | 220 | 40 | 214 | 2.07e-28 | 106 |
| Msa0509670 | MtrunA17_Chr1g0204631 | 25.137 | 183 | 132 | 3 | 36 | 216 | 27 | 206 | 2.68e-14 | 68.9 |
| Msa0509670 | MtrunA17_Chr7g0260361 | 27.778 | 144 | 101 | 2 | 73 | 216 | 12 | 152 | 1.49e-13 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0509670 | AT1G09580.1 | 63.415 | 205 | 71 | 2 | 18 | 220 | 15 | 217 | 6.47e-97 | 281 |
| Msa0509670 | AT1G57620.1 | 58.108 | 222 | 81 | 4 | 1 | 220 | 1 | 212 | 5.13e-91 | 266 |
| Msa0509670 | AT1G21900.1 | 63.462 | 208 | 72 | 3 | 16 | 220 | 10 | 216 | 1.46e-90 | 265 |
| Msa0509670 | AT3G10780.1 | 53.535 | 198 | 86 | 3 | 28 | 220 | 21 | 217 | 1.44e-67 | 207 |
| Msa0509670 | AT1G26690.1 | 40.385 | 208 | 115 | 4 | 17 | 220 | 12 | 214 | 4.46e-54 | 172 |
| Msa0509670 | AT1G14010.1 | 39.713 | 209 | 119 | 4 | 16 | 220 | 7 | 212 | 7.37e-52 | 167 |
| Msa0509670 | AT2G03290.1 | 41.327 | 196 | 111 | 2 | 29 | 220 | 18 | 213 | 1.16e-51 | 166 |
| Msa0509670 | AT1G69460.1 | 41.117 | 197 | 109 | 4 | 29 | 220 | 20 | 214 | 2.47e-51 | 166 |
| Msa0509670 | AT3G29070.1 | 38.860 | 193 | 113 | 3 | 32 | 220 | 34 | 225 | 5.32e-45 | 150 |
| Msa0509670 | AT2G03040.1 | 38.926 | 149 | 87 | 2 | 29 | 173 | 18 | 166 | 6.39e-34 | 119 |
| Msa0509670 | AT3G22845.1 | 26.230 | 183 | 130 | 3 | 36 | 216 | 28 | 207 | 3.88e-14 | 68.9 |
Find 84 sgRNAs with CRISPR-Local
Find 193 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTACATATATTCTGAATTT+AGG | 0.195085 | 3_4:-58140969 | Msa0509670:three_prime_UTR |
| TTGGGACTCTGTTGCTAAAA+AGG | 0.253132 | 3_4:-58142004 | Msa0509670:CDS |
| ATCGGCAACAACATAGTAAT+TGG | 0.296460 | 3_4:+58143305 | None:intergenic |
| GGTTGACTGTGGAATAAAAT+AGG | 0.300784 | 3_4:+58143507 | None:intergenic |
| GTCTCTTGGCGTATGCGTTT+CGG | 0.305564 | 3_4:-58141185 | Msa0509670:CDS |
| ATGGATCCAAACTTGAATTT+GGG | 0.323895 | 3_4:-58143675 | None:intergenic |
| GTAGCTATGTGGCATGCTTT+TGG | 0.326986 | 3_4:-58142095 | Msa0509670:CDS |
| AGCAACAGAGTCCCAATCTT+TGG | 0.327971 | 3_4:+58142011 | None:intergenic |
| ATCTGTTATATTTAAAGAAC+AGG | 0.333875 | 3_4:-58141802 | Msa0509670:intron |
| ATTAGTCTTGAATGGAAAAC+TGG | 0.334614 | 3_4:-58142042 | Msa0509670:CDS |
| AGTACAAAGACTTTGGTCTA+TGG | 0.359806 | 3_4:+58143593 | None:intergenic |
| ACAATTCGTGTTCCTGAACT+TGG | 0.360761 | 3_4:+58143459 | None:intergenic |
| CTGGAATCTCTGCCAAAGAT+TGG | 0.361290 | 3_4:-58142023 | Msa0509670:CDS |
| TGGTTAAGTATCCCCAGTTC+AGG | 0.366565 | 3_4:-58143375 | Msa0509670:CDS |
| GTTCTTCAATTAGTCTTGAA+TGG | 0.366713 | 3_4:-58142050 | Msa0509670:CDS |
| CTAAAACGACAACATGTGTT+TGG | 0.367209 | 3_4:+58143328 | None:intergenic |
| CATGTTACTTATAGTAGAAT+AGG | 0.377565 | 3_4:-58140888 | Msa0509670:three_prime_UTR |
| AACCAAATGGCCTTGGTTTG+AGG | 0.382119 | 3_4:+58143393 | None:intergenic |
| TTGTACTCTTTCTTTCTCTC+GGG | 0.388015 | 3_4:-58143561 | Msa0509670:five_prime_UTR |
| TTTGTACTCTTTCTTTCTCT+CGG | 0.389059 | 3_4:-58143562 | Msa0509670:five_prime_UTR |
| ACCAAATGGCCTTGGTTTGA+GGG | 0.400461 | 3_4:+58143394 | None:intergenic |
| AAAGGCTTCAACCCAAGTTC+AGG | 0.405800 | 3_4:-58143471 | Msa0509670:CDS |
| TCCCTCAAACCAAGGCCATT+TGG | 0.405823 | 3_4:-58143395 | Msa0509670:CDS |
| ATCATTTGCATTAAACATGC+TGG | 0.406313 | 3_4:+58140850 | None:intergenic |
| TTGTGAAGATTATTTCCATA+TGG | 0.419312 | 3_4:+58142168 | None:intergenic |
| TGTATCTGAGACGCTACTTT+CGG | 0.424544 | 3_4:-58141144 | Msa0509670:CDS |
| CCACAGTCAACCATCGGTTA+TGG | 0.438644 | 3_4:-58143496 | Msa0509670:exon |
| GATACTTAACCAAATGGCCT+TGG | 0.444311 | 3_4:+58143386 | None:intergenic |
| CAACCATCGGTTATGGCAAA+AGG | 0.447602 | 3_4:-58143489 | Msa0509670:exon |
| TGGAATCTCTGCCAAAGATT+GGG | 0.449888 | 3_4:-58142022 | Msa0509670:CDS |
| CACGCACTTAGTTCCTGAAC+TGG | 0.458031 | 3_4:+58143362 | None:intergenic |
| GACCAAAGTCTTTGTACTTG+TGG | 0.462482 | 3_4:-58143588 | Msa0509670:five_prime_UTR |
| GTACAAAGACTTTGGTCTAT+GGG | 0.465204 | 3_4:+58143594 | None:intergenic |
| TGTTGTTGCCGATAATATCC+AGG | 0.467878 | 3_4:-58143295 | Msa0509670:CDS |
| GGGACTCAAGTTGGCGTGTA+GGG | 0.477085 | 3_4:+58143628 | None:intergenic |
| TGTAAATGCAAATTGACCTT+GGG | 0.478123 | 3_4:+58142131 | None:intergenic |
| CTTGAGCTAAGGAAACTTGA+TGG | 0.478866 | 3_4:-58141848 | Msa0509670:CDS |
| CATACCTTAGCAGAAATAGT+AGG | 0.479188 | 3_4:+58143261 | None:intergenic |
| CACCACAAGTACAAAGACTT+TGG | 0.492469 | 3_4:+58143586 | None:intergenic |
| AGGAACTAAGTGCGTGTCGC+AGG | 0.493989 | 3_4:-58143355 | Msa0509670:CDS |
| CCCCAGGTGACATCTCCATA+TGG | 0.495395 | 3_4:-58142183 | Msa0509670:intron |
| TTAAATATAACAGATTCTCA+TGG | 0.503411 | 3_4:+58141810 | None:intergenic |
| TTGTAAATGCAAATTGACCT+TGG | 0.510774 | 3_4:+58142130 | None:intergenic |
| GAAGTAAGCGAAGCAACAAA+TGG | 0.515284 | 3_4:-58141232 | Msa0509670:CDS |
| TCAATTTGCATTTACAACTA+CGG | 0.519360 | 3_4:-58142124 | Msa0509670:CDS |
| TAGTAGGAAGTGGGTGACCC+TGG | 0.521407 | 3_4:+58143277 | None:intergenic |
| GATTACCTCTACAAGGGGTA+TGG | 0.525321 | 3_4:-58140997 | Msa0509670:three_prime_UTR |
| TACCTCTACAAGGGGTATGG+TGG | 0.526535 | 3_4:-58140994 | Msa0509670:three_prime_UTR |
| TGGGTGACCCTGGATATTAT+CGG | 0.530206 | 3_4:+58143287 | None:intergenic |
| CAATTCGTGTTCCTGAACTT+GGG | 0.533317 | 3_4:+58143460 | None:intergenic |
| ACTTCCTACTATTTCTGCTA+AGG | 0.538663 | 3_4:-58143265 | Msa0509670:intron |
| ACGCACTTAGTTCCTGAACT+GGG | 0.540090 | 3_4:+58143363 | None:intergenic |
| AAAACTTATAGAAAACAAGT+TGG | 0.540899 | 3_4:+58141074 | None:intergenic |
| ACTGGGGATACTTAACCAAA+TGG | 0.541125 | 3_4:+58143380 | None:intergenic |
| TGGTTCAGTATAATGTCTCT+TGG | 0.541189 | 3_4:-58141199 | Msa0509670:CDS |
| AGGGTGTTGAACTTGAGCTA+AGG | 0.542132 | 3_4:-58141859 | Msa0509670:CDS |
| AGTAGAATAGGAAAAGCAAT+GGG | 0.550580 | 3_4:-58140876 | Msa0509670:three_prime_UTR |
| ATATAACAGATTCTCATGGA+TGG | 0.555960 | 3_4:+58141814 | None:intergenic |
| TTTATTCCACAGTCAACCAT+CGG | 0.564107 | 3_4:-58143502 | Msa0509670:five_prime_UTR |
| GTTGGTGGATTACCTCTACA+AGG | 0.568563 | 3_4:-58141004 | Msa0509670:three_prime_UTR |
| TTAGCAGAAATAGTAGGAAG+TGG | 0.568794 | 3_4:+58143267 | None:intergenic |
| AGGGACTCAAGTTGGCGTGT+AGG | 0.575587 | 3_4:+58143627 | None:intergenic |
| ACCTCTACAAGGGGTATGGT+GGG | 0.579054 | 3_4:-58140993 | Msa0509670:three_prime_UTR |
| TAGTAGAATAGGAAAAGCAA+TGG | 0.591569 | 3_4:-58140877 | Msa0509670:three_prime_UTR |
| TGTACTCTTTCTTTCTCTCG+GGG | 0.592451 | 3_4:-58143560 | Msa0509670:five_prime_UTR |
| AACAATGAAAATGTTACCCA+AGG | 0.597853 | 3_4:-58142147 | Msa0509670:CDS |
| TGGATCCAAACTTGAATTTG+GGG | 0.602759 | 3_4:-58143674 | None:intergenic |
| TACAAAGACTTTGGTCTATG+GGG | 0.607971 | 3_4:+58143595 | None:intergenic |
| TATTAATCTCCCTCAAACCA+AGG | 0.612415 | 3_4:-58143403 | Msa0509670:CDS |
| GCATTTACAACTACGGAGAG+TGG | 0.623113 | 3_4:-58142117 | Msa0509670:CDS |
| TACGGAGAGTGGTAGCTATG+TGG | 0.633734 | 3_4:-58142106 | Msa0509670:CDS |
| CAGATGTTCAATTAACCACA+TGG | 0.633972 | 3_4:+58140929 | None:intergenic |
| TTGAGGGAGATTAATAAGCG+AGG | 0.637007 | 3_4:+58143410 | None:intergenic |
| TAGCAGAAATAGTAGGAAGT+GGG | 0.638507 | 3_4:+58143268 | None:intergenic |
| TCCCACCATACCCCTTGTAG+AGG | 0.640141 | 3_4:+58140992 | None:intergenic |
| GTTGTTGCCGATAATATCCA+GGG | 0.640526 | 3_4:-58143294 | Msa0509670:CDS |
| CAACAAATGGCAGAGTTGCG+TGG | 0.644187 | 3_4:-58141219 | Msa0509670:CDS |
| GGATCCAAACTTGAATTTGG+GGG | 0.646966 | 3_4:-58143673 | None:intergenic |
| TAGGATTGTCGAAAACGAAG+TGG | 0.658460 | 3_4:+58143526 | None:intergenic |
| ATTCTACTATAAGTAACATG+AGG | 0.660930 | 3_4:+58140891 | None:intergenic |
| CGCACTTAGTTCCTGAACTG+GGG | 0.674873 | 3_4:+58143364 | None:intergenic |
| TTGGTGGATTACCTCTACAA+GGG | 0.675678 | 3_4:-58141003 | Msa0509670:three_prime_UTR |
| TGGTGGATTACCTCTACAAG+GGG | 0.690786 | 3_4:-58141002 | Msa0509670:three_prime_UTR |
| CCATAACCGATGGTTGACTG+TGG | 0.695847 | 3_4:+58143496 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATGCTTTATTATTTTTTCT+TGG | - | chr3_4:58141273-58141292 | Msa0509670:intron | 15.0% |
| !!! | AAAAGTTCAAAACAATTTTA+TGG | + | chr3_4:58142875-58142894 | None:intergenic | 15.0% |
| !!! | TTTTCATAAACTATATTAGA+TGG | + | chr3_4:58142905-58142924 | None:intergenic | 15.0% |
| !! | AAATTTATTCAAAGAAAGTT+GGG | - | chr3_4:58143109-58143128 | Msa0509670:intron | 15.0% |
| !!! | TTTGATCTTTATGCTTTATT+TGG | - | chr3_4:58141333-58141352 | Msa0509670:intron | 20.0% |
| !!! | ATTTAAAGTTTCTTCAACTT+AGG | - | chr3_4:58141382-58141401 | Msa0509670:intron | 20.0% |
| !!! | GGATTATAAATTTGTTTATG+AGG | - | chr3_4:58141403-58141422 | Msa0509670:intron | 20.0% |
| !! | AAACTTAATGGTGTAAAATA+AGG | - | chr3_4:58141532-58141551 | Msa0509670:intron | 20.0% |
| !! | AATTCATATGAGTTAAACTA+AGG | - | chr3_4:58141770-58141789 | Msa0509670:intron | 20.0% |
| !! | AAAAAAAACTACTACATTAG+TGG | + | chr3_4:58141819-58141838 | None:intergenic | 20.0% |
| !! | TAACTCAACTAATACATTTA+TGG | - | chr3_4:58142066-58142085 | Msa0509670:CDS | 20.0% |
| !!! | TAATACATTTATGGTTTGTT+TGG | - | chr3_4:58142075-58142094 | Msa0509670:CDS | 20.0% |
| !!! | AATACATTTATGGTTTGTTT+GGG | - | chr3_4:58142076-58142095 | Msa0509670:CDS | 20.0% |
| !! | TTAAATATAACAGATTCTCA+TGG | + | chr3_4:58142708-58142727 | None:intergenic | 20.0% |
| !! | ATCTGTTATATTTAAAGAAC+AGG | - | chr3_4:58142713-58142732 | Msa0509670:intron | 20.0% |
| !! | CTATAACAAAAGATGAAATA+AGG | + | chr3_4:58142958-58142977 | None:intergenic | 20.0% |
| !! | AATTAAGATGTTTATCCAAA+TGG | - | chr3_4:58143031-58143050 | Msa0509670:intron | 20.0% |
| !! | ATTAAGATGTTTATCCAAAT+GGG | - | chr3_4:58143032-58143051 | Msa0509670:intron | 20.0% |
| !!! | TGAGATCTTTTTATTAAGTT+GGG | - | chr3_4:58143080-58143099 | Msa0509670:intron | 20.0% |
| !! | CAAATTTATTCAAAGAAAGT+TGG | - | chr3_4:58143108-58143127 | Msa0509670:intron | 20.0% |
| !! | AATTTATTCAAAGAAAGTTG+GGG | - | chr3_4:58143110-58143129 | Msa0509670:intron | 20.0% |
| !!! | ATTTTTTTTGCACATTGTAT+AGG | - | chr3_4:58143245-58143264 | Msa0509670:intron | 20.0% |
| !!! | TTTTTTTTGCACATTGTATA+GGG | - | chr3_4:58143246-58143265 | Msa0509670:intron | 20.0% |
| !! | AAAACTTATAGAAAACAAGT+TGG | + | chr3_4:58143444-58143463 | None:intergenic | 20.0% |
| !!! | AACTTGTTTTCTATAAGTTT+TGG | - | chr3_4:58143443-58143462 | Msa0509670:CDS | 20.0% |
| !!! | TAGTATTTTTCATGTATCAT+TGG | - | chr3_4:58143486-58143505 | Msa0509670:exon | 20.0% |
| !!! | AGTATTTTTCATGTATCATT+GGG | - | chr3_4:58143487-58143506 | Msa0509670:exon | 20.0% |
| !! | GTTACATATATTCTGAATTT+AGG | - | chr3_4:58143546-58143565 | Msa0509670:five_prime_UTR | 20.0% |
| !! | AATTTGTTTATGAGGCTAAT+AGG | - | chr3_4:58141411-58141430 | Msa0509670:intron | 25.0% |
| ! | ATTTGTTTATGAGGCTAATA+GGG | - | chr3_4:58141412-58141431 | Msa0509670:intron | 25.0% |
| ! | ATTCAACGTCAATACAAATT+TGG | + | chr3_4:58141450-58141469 | None:intergenic | 25.0% |
| ! | TAAAGAACAAGGATGAAATT+TGG | + | chr3_4:58141513-58141532 | None:intergenic | 25.0% |
| ! | TCCTTGTTCTTTAAACTTAA+TGG | - | chr3_4:58141520-58141539 | Msa0509670:intron | 25.0% |
| ! | ACCATTAAGTTTAAAGAACA+AGG | + | chr3_4:58141524-58141543 | None:intergenic | 25.0% |
| ! | TTGCAAAAGTTGTCTAAATT+TGG | + | chr3_4:58141628-58141647 | None:intergenic | 25.0% |
| !!! | TTTTGCAACAACTTTTTAAG+TGG | - | chr3_4:58141640-58141659 | Msa0509670:intron | 25.0% |
| ! | AATATGTGGTTAATTACATC+CGG | - | chr3_4:58141676-58141695 | Msa0509670:intron | 25.0% |
| ! | GGATGGTAAATAGATATATT+AGG | - | chr3_4:58141700-58141719 | Msa0509670:intron | 25.0% |
| ! | ACAACACATGTAAGAAAATT+CGG | + | chr3_4:58141945-58141964 | None:intergenic | 25.0% |
| ! | TTGTGAAGATTATTTCCATA+TGG | + | chr3_4:58142350-58142369 | None:intergenic | 25.0% |
| ! | TCAATTTGCATTTACAACTA+CGG | - | chr3_4:58142391-58142410 | Msa0509670:intron | 25.0% |
| ! | TTGCCTTTGTAATATCTATA+TGG | - | chr3_4:58142576-58142595 | Msa0509670:intron | 25.0% |
| ! | TGCCTTTGTAATATCTATAT+GGG | - | chr3_4:58142577-58142596 | Msa0509670:intron | 25.0% |
| ! | ATCCCATATAGATATTACAA+AGG | + | chr3_4:58142582-58142601 | None:intergenic | 25.0% |
| !! | GTTTAATGACATAATCGTTT+TGG | - | chr3_4:58142622-58142641 | Msa0509670:intron | 25.0% |
| !!! | GATGTTTGATTTCAGTTTTA+GGG | - | chr3_4:58142758-58142777 | Msa0509670:intron | 25.0% |
| ! | GAAAATAGCTTATAGCTAAT+AGG | - | chr3_4:58142920-58142939 | Msa0509670:intron | 25.0% |
| ! | TTAAGATGTTTATCCAAATG+GGG | - | chr3_4:58143033-58143052 | Msa0509670:intron | 25.0% |
| !! | CTGAGATCTTTTTATTAAGT+TGG | - | chr3_4:58143079-58143098 | Msa0509670:intron | 25.0% |
| !! | ATTTTACTTTCTTATTGCAC+TGG | - | chr3_4:58143412-58143431 | Msa0509670:CDS | 25.0% |
| !! | GTATTTTTCATGTATCATTG+GGG | - | chr3_4:58143488-58143507 | Msa0509670:exon | 25.0% |
| !! | TATTTTTCATGTATCATTGG+GGG | - | chr3_4:58143489-58143508 | Msa0509670:exon | 25.0% |
| !!! | TTTTGTTACTTTATTCCATG+TGG | - | chr3_4:58143571-58143590 | Msa0509670:five_prime_UTR | 25.0% |
| ! | ATTCTACTATAAGTAACATG+AGG | + | chr3_4:58143627-58143646 | None:intergenic | 25.0% |
| !! | CATGTTACTTATAGTAGAAT+AGG | - | chr3_4:58143627-58143646 | Msa0509670:five_prime_UTR | 25.0% |
| TTTGTACTCTTTCTTTCTCT+CGG | - | chr3_4:58140953-58140972 | Msa0509670:three_prime_UTR | 30.0% | |
| TCATATTGACCAGTTCAAAT+AGG | - | chr3_4:58141570-58141589 | Msa0509670:intron | 30.0% | |
| AATTTGGTTATCCTCATTGT+TGG | + | chr3_4:58141612-58141631 | None:intergenic | 30.0% | |
| TATATCTATTTACCATCCAC+CGG | + | chr3_4:58141698-58141717 | None:intergenic | 30.0% | |
| CAACACATGTAAGAAAATTC+GGG | + | chr3_4:58141944-58141963 | None:intergenic | 30.0% | |
| !!! | ATCATTTTTGAGATACGTGT+CGG | + | chr3_4:58142001-58142020 | None:intergenic | 30.0% |
| AAAATGATACACCTAATCAC+AGG | - | chr3_4:58142013-58142032 | Msa0509670:CDS | 30.0% | |
| AACAATGAAAATGTTACCCA+AGG | - | chr3_4:58142368-58142387 | Msa0509670:intron | 30.0% | |
| TGTAAATGCAAATTGACCTT+GGG | + | chr3_4:58142387-58142406 | None:intergenic | 30.0% | |
| TTGTAAATGCAAATTGACCT+TGG | + | chr3_4:58142388-58142407 | None:intergenic | 30.0% | |
| ATGAATAGCAAAAATCTAGC+AGG | - | chr3_4:58142443-58142462 | Msa0509670:intron | 30.0% | |
| !! | GTTCTTCAATTAGTCTTGAA+TGG | - | chr3_4:58142465-58142484 | Msa0509670:intron | 30.0% |
| !! | ATTAGTCTTGAATGGAAAAC+TGG | - | chr3_4:58142473-58142492 | Msa0509670:intron | 30.0% |
| TGCTAAAAAGGAAAAGATAG+AGG | - | chr3_4:58142523-58142542 | Msa0509670:intron | 30.0% | |
| !!! | GACATAATCGTTTTGGAAAA+TGG | - | chr3_4:58142629-58142648 | Msa0509670:intron | 30.0% |
| !!! | TCGTTTTGGAAAATGGTTTA+AGG | - | chr3_4:58142636-58142655 | Msa0509670:intron | 30.0% |
| !!! | CGTTTTGGAAAATGGTTTAA+GGG | - | chr3_4:58142637-58142656 | Msa0509670:intron | 30.0% |
| ATATAACAGATTCTCATGGA+TGG | + | chr3_4:58142704-58142723 | None:intergenic | 30.0% | |
| !! | CGATGTTTGATTTCAGTTTT+AGG | - | chr3_4:58142757-58142776 | Msa0509670:intron | 30.0% |
| GTGAGCTTATCTACTAATAT+AGG | - | chr3_4:58142800-58142819 | Msa0509670:intron | 30.0% | |
| ! | TATGTGTCAATGATGATGAT+GGG | - | chr3_4:58143151-58143170 | Msa0509670:intron | 30.0% |
| TAGTAGAATAGGAAAAGCAA+TGG | - | chr3_4:58143638-58143657 | Msa0509670:five_prime_UTR | 30.0% | |
| AGTAGAATAGGAAAAGCAAT+GGG | - | chr3_4:58143639-58143658 | Msa0509670:five_prime_UTR | 30.0% | |
| TACAAAGACTTTGGTCTATG+GGG | + | chr3_4:58140923-58140942 | None:intergenic | 35.0% | |
| GTACAAAGACTTTGGTCTAT+GGG | + | chr3_4:58140924-58140943 | None:intergenic | 35.0% | |
| AGTACAAAGACTTTGGTCTA+TGG | + | chr3_4:58140925-58140944 | None:intergenic | 35.0% | |
| TTGTACTCTTTCTTTCTCTC+GGG | - | chr3_4:58140954-58140973 | Msa0509670:three_prime_UTR | 35.0% | |
| GGTTGACTGTGGAATAAAAT+AGG | + | chr3_4:58141011-58141030 | None:intergenic | 35.0% | |
| TTTATTCCACAGTCAACCAT+CGG | - | chr3_4:58141013-58141032 | Msa0509670:three_prime_UTR | 35.0% | |
| TATTAATCTCCCTCAAACCA+AGG | - | chr3_4:58141112-58141131 | Msa0509670:exon | 35.0% | |
| CTAAAACGACAACATGTGTT+TGG | + | chr3_4:58141190-58141209 | None:intergenic | 35.0% | |
| ATCGGCAACAACATAGTAAT+TGG | + | chr3_4:58141213-58141232 | None:intergenic | 35.0% | |
| TAGCAGAAATAGTAGGAAGT+GGG | + | chr3_4:58141250-58141269 | None:intergenic | 35.0% | |
| TTAGCAGAAATAGTAGGAAG+TGG | + | chr3_4:58141251-58141270 | None:intergenic | 35.0% | |
| !! | ACTTCCTACTATTTCTGCTA+AGG | - | chr3_4:58141250-58141269 | Msa0509670:CDS | 35.0% |
| CATACCTTAGCAGAAATAGT+AGG | + | chr3_4:58141257-58141276 | None:intergenic | 35.0% | |
| ! | GTTGCTTTCTCAGCAAATTT+AGG | - | chr3_4:58141486-58141505 | Msa0509670:intron | 35.0% |
| GTTGACGCAGTTTAAATATG+TGG | - | chr3_4:58141662-58141681 | Msa0509670:intron | 35.0% | |
| ACTCATATGAATTTCAGTCG+TGG | + | chr3_4:58141763-58141782 | None:intergenic | 35.0% | |
| AGACTCATCTACGGTAAAAT+TGG | + | chr3_4:58141855-58141874 | None:intergenic | 35.0% | |
| AATTTGACACTCCTGTGATT+AGG | + | chr3_4:58142027-58142046 | None:intergenic | 35.0% | |
| !! | ACATTTATGGTTTGTTTGGG+AGG | - | chr3_4:58142079-58142098 | Msa0509670:CDS | 35.0% |
| !! | CATTTATGGTTTGTTTGGGA+GGG | - | chr3_4:58142080-58142099 | Msa0509670:CDS | 35.0% |
| !!! | GGAAATTCATGAGTTTTGGA+GGG | + | chr3_4:58142270-58142289 | None:intergenic | 35.0% |
| ACAAGTGCTTACGATATAAG+CGG | - | chr3_4:58143006-58143025 | Msa0509670:intron | 35.0% | |
| ! | CTATGTGTCAATGATGATGA+TGG | - | chr3_4:58143150-58143169 | Msa0509670:intron | 35.0% |
| TGGTTCAGTATAATGTCTCT+TGG | - | chr3_4:58143316-58143335 | Msa0509670:CDS | 35.0% | |
| CAGATGTTCAATTAACCACA+TGG | + | chr3_4:58143589-58143608 | None:intergenic | 35.0% | |
| AAAAATCGAGGGACTCAAGT+TGG | + | chr3_4:58140899-58140918 | None:intergenic | 40.0% | |
| GTCTATGGGGAAAAAATCGA+GGG | + | chr3_4:58140910-58140929 | None:intergenic | 40.0% | |
| GACCAAAGTCTTTGTACTTG+TGG | - | chr3_4:58140927-58140946 | Msa0509670:three_prime_UTR | 40.0% | |
| CACCACAAGTACAAAGACTT+TGG | + | chr3_4:58140932-58140951 | None:intergenic | 40.0% | |
| TGTACTCTTTCTTTCTCTCG+GGG | - | chr3_4:58140955-58140974 | Msa0509670:three_prime_UTR | 40.0% | |
| TAGGATTGTCGAAAACGAAG+TGG | + | chr3_4:58140992-58141011 | None:intergenic | 40.0% | |
| CAATTCGTGTTCCTGAACTT+GGG | + | chr3_4:58141058-58141077 | None:intergenic | 40.0% | |
| ACAATTCGTGTTCCTGAACT+TGG | + | chr3_4:58141059-58141078 | None:intergenic | 40.0% | |
| TTGAGGGAGATTAATAAGCG+AGG | + | chr3_4:58141108-58141127 | None:intergenic | 40.0% | |
| GATACTTAACCAAATGGCCT+TGG | + | chr3_4:58141132-58141151 | None:intergenic | 40.0% | |
| ACTGGGGATACTTAACCAAA+TGG | + | chr3_4:58141138-58141157 | None:intergenic | 40.0% | |
| TGTTGTTGCCGATAATATCC+AGG | - | chr3_4:58141220-58141239 | Msa0509670:CDS | 40.0% | |
| GTTGTTGCCGATAATATCCA+GGG | - | chr3_4:58141221-58141240 | Msa0509670:CDS | 40.0% | |
| CCAAGCTTTCCTATTTGAAC+TGG | + | chr3_4:58141582-58141601 | None:intergenic | 40.0% | |
| CCAGTTCAAATAGGAAAGCT+TGG | - | chr3_4:58141579-58141598 | Msa0509670:intron | 40.0% | |
| TTGGATACAGACCAACAATG+AGG | - | chr3_4:58141598-58141617 | Msa0509670:intron | 40.0% | |
| ATGTGGTTAATTACATCCGG+TGG | - | chr3_4:58141679-58141698 | Msa0509670:intron | 40.0% | |
| CGTGGTTAATGAAGTAACGT+TGG | + | chr3_4:58141745-58141764 | None:intergenic | 40.0% | |
| ACACAGCATAGACTCATCTA+CGG | + | chr3_4:58141864-58141883 | None:intergenic | 40.0% | |
| TGTGTTGTACGTGTATCGTA+CGG | - | chr3_4:58141957-58141976 | Msa0509670:intron | 40.0% | |
| !!! | TGAGATACGTGTCGGTTTTT+GGG | + | chr3_4:58141993-58142012 | None:intergenic | 40.0% |
| !!! | TTGAGATACGTGTCGGTTTT+TGG | + | chr3_4:58141994-58142013 | None:intergenic | 40.0% |
| ! | TTTGTTTGGGAGGGAGATTT+TGG | - | chr3_4:58142089-58142108 | Msa0509670:CDS | 40.0% |
| !!! | TTCATGAGTTTTGGAGGGAT+AGG | + | chr3_4:58142265-58142284 | None:intergenic | 40.0% |
| !! | GGGAAATTCATGAGTTTTGG+AGG | + | chr3_4:58142271-58142290 | None:intergenic | 40.0% |
| ! | GGAGGGAAATTCATGAGTTT+TGG | + | chr3_4:58142274-58142293 | None:intergenic | 40.0% |
| TGGAATCTCTGCCAAAGATT+GGG | - | chr3_4:58142493-58142512 | Msa0509670:intron | 40.0% | |
| TTGGGACTCTGTTGCTAAAA+AGG | - | chr3_4:58142511-58142530 | Msa0509670:intron | 40.0% | |
| CTTGAGCTAAGGAAACTTGA+TGG | - | chr3_4:58142667-58142686 | Msa0509670:intron | 40.0% | |
| GTTTATCCAAATGGGGATCA+TGG | - | chr3_4:58143040-58143059 | Msa0509670:intron | 40.0% | |
| TTACATCCATGATCCCCATT+TGG | + | chr3_4:58143049-58143068 | None:intergenic | 40.0% | |
| !! | TGTCAATGATGATGATGGGT+GGG | - | chr3_4:58143155-58143174 | Msa0509670:intron | 40.0% |
| GAAGTAAGCGAAGCAACAAA+TGG | - | chr3_4:58143283-58143302 | Msa0509670:CDS | 40.0% | |
| ! | TGTATCTGAGACGCTACTTT+CGG | - | chr3_4:58143371-58143390 | Msa0509670:CDS | 40.0% |
| TTTCATGTATCATTGGGGGT+TGG | - | chr3_4:58143493-58143512 | Msa0509670:exon | 40.0% | |
| !! | TTGGTGGATTACCTCTACAA+GGG | - | chr3_4:58143512-58143531 | Msa0509670:five_prime_UTR | 40.0% |
| GGTCTATGGGGAAAAAATCG+AGG | + | chr3_4:58140911-58140930 | None:intergenic | 45.0% | |
| ! | CAACCATCGGTTATGGCAAA+AGG | - | chr3_4:58141026-58141045 | Msa0509670:three_prime_UTR | 45.0% |
| ! | AAGCCTTTTGCCATAACCGA+TGG | + | chr3_4:58141032-58141051 | None:intergenic | 45.0% |
| AAAGGCTTCAACCCAAGTTC+AGG | - | chr3_4:58141044-58141063 | Msa0509670:three_prime_UTR | 45.0% | |
| ! | ACCAAATGGCCTTGGTTTGA+GGG | + | chr3_4:58141124-58141143 | None:intergenic | 45.0% |
| ! | AACCAAATGGCCTTGGTTTG+AGG | + | chr3_4:58141125-58141144 | None:intergenic | 45.0% |
| TGGTTAAGTATCCCCAGTTC+AGG | - | chr3_4:58141140-58141159 | Msa0509670:CDS | 45.0% | |
| ACGCACTTAGTTCCTGAACT+GGG | + | chr3_4:58141155-58141174 | None:intergenic | 45.0% | |
| TGGGTGACCCTGGATATTAT+CGG | + | chr3_4:58141231-58141250 | None:intergenic | 45.0% | |
| GGTTAATTACATCCGGTGGA+TGG | - | chr3_4:58141683-58141702 | Msa0509670:intron | 45.0% | |
| TAAACTAAGGTCCTGCACGA+TGG | - | chr3_4:58141783-58141802 | Msa0509670:intron | 45.0% | |
| GTGTTGTACGTGTATCGTAC+GGG | - | chr3_4:58141958-58141977 | Msa0509670:intron | 45.0% | |
| TCCATATGGAGATGTCACCT+GGG | + | chr3_4:58142336-58142355 | None:intergenic | 45.0% | |
| TTCCATATGGAGATGTCACC+TGG | + | chr3_4:58142337-58142356 | None:intergenic | 45.0% | |
| GCATTTACAACTACGGAGAG+TGG | - | chr3_4:58142398-58142417 | Msa0509670:intron | 45.0% | |
| ! | GTAGCTATGTGGCATGCTTT+TGG | - | chr3_4:58142420-58142439 | Msa0509670:intron | 45.0% |
| CTGGAATCTCTGCCAAAGAT+TGG | - | chr3_4:58142492-58142511 | Msa0509670:intron | 45.0% | |
| AGCAACAGAGTCCCAATCTT+TGG | + | chr3_4:58142507-58142526 | None:intergenic | 45.0% | |
| !! | AGGGTGTTGAACTTGAGCTA+AGG | - | chr3_4:58142656-58142675 | Msa0509670:intron | 45.0% |
| !! | GTGTCAATGATGATGATGGG+TGG | - | chr3_4:58143154-58143173 | Msa0509670:intron | 45.0% |
| !! | GTTGGTGGATTACCTCTACA+AGG | - | chr3_4:58143511-58143530 | Msa0509670:five_prime_UTR | 45.0% |
| !! | TGGTGGATTACCTCTACAAG+GGG | - | chr3_4:58143513-58143532 | Msa0509670:five_prime_UTR | 45.0% |
| GATTACCTCTACAAGGGGTA+TGG | - | chr3_4:58143518-58143537 | Msa0509670:five_prime_UTR | 45.0% | |
| CCATAACCGATGGTTGACTG+TGG | + | chr3_4:58141022-58141041 | None:intergenic | 50.0% | |
| ! | CCACAGTCAACCATCGGTTA+TGG | - | chr3_4:58141019-58141038 | Msa0509670:three_prime_UTR | 50.0% |
| TCCCTCAAACCAAGGCCATT+TGG | - | chr3_4:58141120-58141139 | Msa0509670:exon | 50.0% | |
| CGCACTTAGTTCCTGAACTG+GGG | + | chr3_4:58141154-58141173 | None:intergenic | 50.0% | |
| CACGCACTTAGTTCCTGAAC+TGG | + | chr3_4:58141156-58141175 | None:intergenic | 50.0% | |
| TACGTGTATCGTACGGGTGT+CGG | - | chr3_4:58141964-58141983 | Msa0509670:intron | 50.0% | |
| !! | TTGGGAGGGAGATTTTGGAG+AGG | - | chr3_4:58142094-58142113 | Msa0509670:CDS | 50.0% |
| ! | ATCACACCGAGGGTTTGCTT+GGG | + | chr3_4:58142295-58142314 | None:intergenic | 50.0% |
| ! | TATCACACCGAGGGTTTGCT+TGG | + | chr3_4:58142296-58142315 | None:intergenic | 50.0% |
| GCAGTCATGTATCACACCGA+GGG | + | chr3_4:58142305-58142324 | None:intergenic | 50.0% | |
| AGATGTCACCTGGGGCAAAA+AGG | + | chr3_4:58142327-58142346 | None:intergenic | 50.0% | |
| CCATATGGAGATGTCACCTG+GGG | + | chr3_4:58142335-58142354 | None:intergenic | 50.0% | |
| TACGGAGAGTGGTAGCTATG+TGG | - | chr3_4:58142409-58142428 | Msa0509670:intron | 50.0% | |
| CAACAAATGGCAGAGTTGCG+TGG | - | chr3_4:58143296-58143315 | Msa0509670:CDS | 50.0% | |
| GTCTCTTGGCGTATGCGTTT+CGG | - | chr3_4:58143330-58143349 | Msa0509670:CDS | 50.0% | |
| CATGTATCATTGGGGGTTGG+TGG | - | chr3_4:58143496-58143515 | Msa0509670:exon | 50.0% | |
| ! | TACCTCTACAAGGGGTATGG+TGG | - | chr3_4:58143521-58143540 | Msa0509670:five_prime_UTR | 50.0% |
| ! | ACCTCTACAAGGGGTATGGT+GGG | - | chr3_4:58143522-58143541 | Msa0509670:five_prime_UTR | 50.0% |
| !! | GGGACTCAAGTTGGCGTGTA+GGG | + | chr3_4:58140890-58140909 | None:intergenic | 55.0% |
| !! | AGGGACTCAAGTTGGCGTGT+AGG | + | chr3_4:58140891-58140910 | None:intergenic | 55.0% |
| AGGAACTAAGTGCGTGTCGC+AGG | - | chr3_4:58141160-58141179 | Msa0509670:CDS | 55.0% | |
| TAGTAGGAAGTGGGTGACCC+TGG | + | chr3_4:58141241-58141260 | None:intergenic | 55.0% | |
| ! | GTGTTGATGTGCCATCGTGC+AGG | + | chr3_4:58141797-58141816 | None:intergenic | 55.0% |
| !! | GGAGGGAGATTTTGGAGAGG+AGG | - | chr3_4:58142097-58142116 | Msa0509670:CDS | 55.0% |
| TTCCCTCCCAAGCAAACCCT+CGG | - | chr3_4:58142286-58142305 | Msa0509670:intron | 55.0% | |
| GGCAGTCATGTATCACACCG+AGG | + | chr3_4:58142306-58142325 | None:intergenic | 55.0% | |
| ! | CATGACTGCCTTTTTGCCCC+AGG | - | chr3_4:58142316-58142335 | Msa0509670:intron | 55.0% |
| CCCCAGGTGACATCTCCATA+TGG | - | chr3_4:58142332-58142351 | Msa0509670:intron | 55.0% | |
| TCCCACCATACCCCTTGTAG+AGG | + | chr3_4:58143526-58143545 | None:intergenic | 55.0% | |
| ! | CACCGAGGGTTTGCTTGGGA+GGG | + | chr3_4:58142291-58142310 | None:intergenic | 60.0% |
| ! | ACACCGAGGGTTTGCTTGGG+AGG | + | chr3_4:58142292-58142311 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 58140855 | 58143682 | 58140855 | ID=Msa0509670;Name=Msa0509670 |
| chr3_4 | mRNA | 58140855 | 58143682 | 58140855 | ID=Msa0509670-mRNA-1;Parent=Msa0509670;Name=Msa0509670-mRNA-1;_AED=0.06;_eAED=0.06;_QI=183|1|1|1|1|1|4|271|220 |
| chr3_4 | exon | 58140855 | 58141270 | 58140855 | ID=Msa0509670-mRNA-1:exon:13457;Parent=Msa0509670-mRNA-1 |
| chr3_4 | exon | 58141803 | 58141879 | 58141803 | ID=Msa0509670-mRNA-1:exon:13456;Parent=Msa0509670-mRNA-1 |
| chr3_4 | exon | 58141993 | 58142199 | 58141993 | ID=Msa0509670-mRNA-1:exon:13455;Parent=Msa0509670-mRNA-1 |
| chr3_4 | exon | 58143266 | 58143682 | 58143266 | ID=Msa0509670-mRNA-1:exon:13454;Parent=Msa0509670-mRNA-1 |
| chr3_4 | five_prime_UTR | 58143500 | 58143682 | 58143500 | ID=Msa0509670-mRNA-1:five_prime_utr;Parent=Msa0509670-mRNA-1 |
| chr3_4 | CDS | 58143266 | 58143499 | 58143266 | ID=Msa0509670-mRNA-1:cds;Parent=Msa0509670-mRNA-1 |
| chr3_4 | CDS | 58141993 | 58142199 | 58141993 | ID=Msa0509670-mRNA-1:cds;Parent=Msa0509670-mRNA-1 |
| chr3_4 | CDS | 58141803 | 58141879 | 58141803 | ID=Msa0509670-mRNA-1:cds;Parent=Msa0509670-mRNA-1 |
| chr3_4 | CDS | 58141126 | 58141270 | 58141126 | ID=Msa0509670-mRNA-1:cds;Parent=Msa0509670-mRNA-1 |
| chr3_4 | three_prime_UTR | 58140855 | 58141125 | 58140855 | ID=Msa0509670-mRNA-1:three_prime_utr;Parent=Msa0509670-mRNA-1 |
| Gene Sequence |
| Protein sequence |
